2021-07-13T21:36:49,527 Created temporary directory: /tmp/pip-ephem-wheel-cache-p8jlvq32 2021-07-13T21:36:49,530 Created temporary directory: /tmp/pip-req-tracker-tygq4mtu 2021-07-13T21:36:49,530 Initialized build tracking at /tmp/pip-req-tracker-tygq4mtu 2021-07-13T21:36:49,531 Created build tracker: /tmp/pip-req-tracker-tygq4mtu 2021-07-13T21:36:49,531 Entered build tracker: /tmp/pip-req-tracker-tygq4mtu 2021-07-13T21:36:49,531 Created temporary directory: /tmp/pip-wheel-5wks6vlg 2021-07-13T21:36:49,561 1 location(s) to search for versions of peas: 2021-07-13T21:36:49,561 * https://pypi.org/simple/peas/ 2021-07-13T21:36:49,561 Fetching project page and analyzing links: https://pypi.org/simple/peas/ 2021-07-13T21:36:49,562 Getting page https://pypi.org/simple/peas/ 2021-07-13T21:36:49,564 Found index url https://pypi.org/simple 2021-07-13T21:36:49,751 Found link https://files.pythonhosted.org/packages/9b/66/c14a0582e4bbdf5a282dd330f97f87050caa28b5489c2a9fff8c1020d24c/PEAS-0.1.0.tar.gz#sha256=fb959b80f8aeb09471441c93ad89ebdecaa44f3905745a2e82322a85b83ac598 (from https://pypi.org/simple/peas/), version: 0.1.0 2021-07-13T21:36:49,752 Found link https://files.pythonhosted.org/packages/cf/41/53783f202e7e08a803eb4b44bd57b9d0ab41072e806a63e6ea7d6fe79bbe/PEAS-0.1.1.tar.gz#sha256=63cd4e9489910d52ccdd50651f72528fca253934c4789603f45c19f2c5dce0c4 (from https://pypi.org/simple/peas/), version: 0.1.1 2021-07-13T21:36:49,752 Found link https://files.pythonhosted.org/packages/76/0d/3b455b7d1aadf43640ec1ada2542badc28d4edcedcd26bf3c9d0d043ac0a/PEAS-0.1.2.tar.gz#sha256=284bff9007eb195d2de1aaea26c37e5a9f0ccefb0535bd5e9a1b6306604c8c73 (from https://pypi.org/simple/peas/), version: 0.1.2 2021-07-13T21:36:49,752 Found link https://files.pythonhosted.org/packages/c6/82/e5d221ec619b6a91db9798d27fe8d2fe24ffca6508051cbad91aafa2313b/PEAS-0.1.3.tar.gz#sha256=e5ae59969739fba3bf168d13c032f534421a065863379de2d2d2d704032038ae (from https://pypi.org/simple/peas/), version: 0.1.3 2021-07-13T21:36:49,753 Found link https://files.pythonhosted.org/packages/58/1d/d1b0ce17baf1792fe30e4948ebb32a3951eebeea5ce8d51225ae77b120aa/PEAS-0.1.4.tar.gz#sha256=f38135760be730b732aa7bc344f1acfcad994dff876193a10d82cce1ffd1ec86 (from https://pypi.org/simple/peas/), version: 0.1.4 2021-07-13T21:36:49,753 Found link https://files.pythonhosted.org/packages/7e/19/0430412d521e358c7961785cdb71b3ca3cfd22098e5d10acf191e8255de9/PEAS-0.1.5.tar.gz#sha256=7322d728b495f4040350a95f37dd1637ccd3097ea0917a91005cc104fa214342 (from https://pypi.org/simple/peas/), version: 0.1.5 2021-07-13T21:36:49,753 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/1a/e5/1cc91b3698d0d6ea12cb00942afd7b320876dc6cfa869e31b974fa8d00f8/PEAS-0.1.6-py3.6-linux-x86_64.egg#sha256=5813b418812c43fb780c6070aeba21eeefe43b46217c268fd7ea9dbcba1b6a58 (from https://pypi.org/simple/peas/) (requires-python:>=3.6) 2021-07-13T21:36:49,754 Found link https://files.pythonhosted.org/packages/6f/9c/1ff65d3e87c46bde1f0d6dcf626167ca9046f4e9aa32b4886dd607f7018e/PEAS-0.1.6.tar.gz#sha256=ab7228b4f20502d6d24fd05df407f68b0f02c288452f6309b69e6657fc715b77 (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.1.6 2021-07-13T21:36:49,754 Found link https://files.pythonhosted.org/packages/1b/ae/4bee43ee6e5eeaebbf55e1d85c55787a0f08b476ee249eeb88c7ce288583/PEAS-0.1.7.tar.gz#sha256=a03a69ae93b35823d3fc12f862786886f1440d61b56291a49cca6917b47e9f6e (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.1.7 2021-07-13T21:36:49,755 Found link https://files.pythonhosted.org/packages/5e/de/629a588e1fa5c687db7602137af02fb19ccad6c1ec8621708fc8c9cb6ed1/PEAS-0.1.8.tar.gz#sha256=b9a57c04fd2b1bc3ba6a00e5d41e54ff38606983f8efe99f2c558337cbc261c5 (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.1.8 2021-07-13T21:36:49,756 Found link https://files.pythonhosted.org/packages/46/7d/488abc94e2806476eeaa0abba75f6192a639810563a1652507e1119c38a9/PEAS-0.1.9.tar.gz#sha256=348187f9e1e8df08fd6e394f9e3391214d971caf1e81c66514d219bd72cd6b7c (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.1.9 2021-07-13T21:36:49,756 Found link https://files.pythonhosted.org/packages/ba/31/ee2577538808f953a7922d59946ba834538c4a9af7c274df5fcf9e36ded3/PEAS-0.1.10.tar.gz#sha256=ecb41df7779bbea83db504d0413d3e18310c85cff8656b0e105abe1b905791d3 (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.1.10 2021-07-13T21:36:49,757 Found link https://files.pythonhosted.org/packages/c3/57/a5e783243c24874658f6f6079ba4c77626229584e6b64b2486fb30ef22a0/PEAS-0.1.11.tar.gz#sha256=4902f4a1045c4e03ea3492fa9a55fd9b87de45a553bf82bc9bc08e834839a024 (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.1.11 2021-07-13T21:36:49,757 Found link https://files.pythonhosted.org/packages/64/11/0fc077f98491163a66eadfc6c467cf49a7d3067cb3408c22026743959e37/PEAS-0.1.12.tar.gz#sha256=4b3b8842531bcf79884f58cb25c275b683cd1792593120349d5d81579d21dac7 (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.1.12 2021-07-13T21:36:49,758 Found link https://files.pythonhosted.org/packages/50/ec/3d8c2f777c78beaa1e704706e8642175b69c0488516349c47a220aae34c7/PEAS-0.1.13.tar.gz#sha256=d8ed78e036dabd0054750a761e4a04a1f2d991eec942aa3e2ab5725cac7c0243 (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.1.13 2021-07-13T21:36:49,758 Found link https://files.pythonhosted.org/packages/8b/dc/056a2484517834e51eab5e15ff90a3dcc18cabe29c01f48b13b6584b850b/PEAS-0.1.14.tar.gz#sha256=93299078c6a0b36aad5c8a13089007cda5a325d3b030d3f5961cf4abb2b3ea6a (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.1.14 2021-07-13T21:36:49,759 Found link https://files.pythonhosted.org/packages/a1/8e/dbc6955e5e57d1838c0b3c228eb75e2bd359bb43dabee3f00670d7b18d19/PEAS-0.2.0.tar.gz#sha256=34da2a55e23816d350af7e899ef06441b8fe0b9e35ef0841453347d2f79b49c5 (from https://pypi.org/simple/peas/) (requires-python:>=3.6), version: 0.2.0 2021-07-13T21:36:49,759 Skipping link: not a file: https://pypi.org/simple/peas/ 2021-07-13T21:36:49,779 Given no hashes to check 1 links for project 'peas': discarding no candidates 2021-07-13T21:36:49,798 Collecting peas==0.1.0 2021-07-13T21:36:49,799 Created temporary directory: /tmp/pip-unpack-2b9fnrc2 2021-07-13T21:36:49,984 Downloading PEAS-0.1.0.tar.gz (70 kB) 2021-07-13T21:36:50,090 Added peas==0.1.0 from https://files.pythonhosted.org/packages/9b/66/c14a0582e4bbdf5a282dd330f97f87050caa28b5489c2a9fff8c1020d24c/PEAS-0.1.0.tar.gz#sha256=fb959b80f8aeb09471441c93ad89ebdecaa44f3905745a2e82322a85b83ac598 to build tracker '/tmp/pip-req-tracker-tygq4mtu' 2021-07-13T21:36:50,091 Running setup.py (path:/tmp/pip-wheel-5wks6vlg/peas_614a82465b5f49368fde90f3e2e3fe8c/setup.py) egg_info for package peas 2021-07-13T21:36:50,092 Created temporary directory: /tmp/pip-pip-egg-info-gnolpp2x 2021-07-13T21:36:50,092 Running command python setup.py egg_info 2021-07-13T21:36:52,268 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5wks6vlg/peas_614a82465b5f49368fde90f3e2e3fe8c/peas/scoring_funcs_cython.pyx 2021-07-13T21:36:52,268 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T21:36:53,791 ******************************************************************************** 2021-07-13T21:36:53,792 * PEAS 0.1.0 by Dylan Skola * 2021-07-13T21:36:53,792 ******************************************************************************** 2021-07-13T21:36:53,792 Compiling peas/scoring_funcs_cython.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-13T21:36:53,793 [1/1] Cythonizing peas/scoring_funcs_cython.pyx 2021-07-13T21:36:53,860 Warning: 'classifiers' should be a list, got type 'tuple' 2021-07-13T21:36:54,002 ['/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include'] 2021-07-13T21:36:54,002 running egg_info 2021-07-13T21:36:54,005 creating /tmp/pip-pip-egg-info-gnolpp2x/PEAS.egg-info 2021-07-13T21:36:54,006 writing /tmp/pip-pip-egg-info-gnolpp2x/PEAS.egg-info/PKG-INFO 2021-07-13T21:36:54,008 writing dependency_links to /tmp/pip-pip-egg-info-gnolpp2x/PEAS.egg-info/dependency_links.txt 2021-07-13T21:36:54,010 writing requirements to /tmp/pip-pip-egg-info-gnolpp2x/PEAS.egg-info/requires.txt 2021-07-13T21:36:54,011 writing top-level names to /tmp/pip-pip-egg-info-gnolpp2x/PEAS.egg-info/top_level.txt 2021-07-13T21:36:54,013 writing manifest file '/tmp/pip-pip-egg-info-gnolpp2x/PEAS.egg-info/SOURCES.txt' 2021-07-13T21:36:54,206 reading manifest file '/tmp/pip-pip-egg-info-gnolpp2x/PEAS.egg-info/SOURCES.txt' 2021-07-13T21:36:54,212 writing manifest file '/tmp/pip-pip-egg-info-gnolpp2x/PEAS.egg-info/SOURCES.txt' 2021-07-13T21:36:54,427 Source in /tmp/pip-wheel-5wks6vlg/peas_614a82465b5f49368fde90f3e2e3fe8c has version 0.1.0, which satisfies requirement peas==0.1.0 from https://files.pythonhosted.org/packages/9b/66/c14a0582e4bbdf5a282dd330f97f87050caa28b5489c2a9fff8c1020d24c/PEAS-0.1.0.tar.gz#sha256=fb959b80f8aeb09471441c93ad89ebdecaa44f3905745a2e82322a85b83ac598 2021-07-13T21:36:54,428 Removed peas==0.1.0 from https://files.pythonhosted.org/packages/9b/66/c14a0582e4bbdf5a282dd330f97f87050caa28b5489c2a9fff8c1020d24c/PEAS-0.1.0.tar.gz#sha256=fb959b80f8aeb09471441c93ad89ebdecaa44f3905745a2e82322a85b83ac598 from build tracker '/tmp/pip-req-tracker-tygq4mtu' 2021-07-13T21:36:54,432 Created temporary directory: /tmp/pip-unpack-2m_ju8rl 2021-07-13T21:36:54,432 Building wheels for collected packages: peas 2021-07-13T21:36:54,436 Created temporary directory: /tmp/pip-wheel-jopcgyr3 2021-07-13T21:36:54,437 Building wheel for peas (setup.py): started 2021-07-13T21:36:54,437 Destination directory: /tmp/pip-wheel-jopcgyr3 2021-07-13T21:36:54,437 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5wks6vlg/peas_614a82465b5f49368fde90f3e2e3fe8c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5wks6vlg/peas_614a82465b5f49368fde90f3e2e3fe8c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-jopcgyr3 2021-07-13T21:36:55,883 ******************************************************************************** 2021-07-13T21:36:55,884 * PEAS 0.1.0 by Dylan Skola * 2021-07-13T21:36:55,884 ******************************************************************************** 2021-07-13T21:36:56,382 ['/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include'] 2021-07-13T21:36:56,438 Warning: 'classifiers' should be a list, got type 'tuple' 2021-07-13T21:36:56,615 running bdist_wheel 2021-07-13T21:36:56,621 running build 2021-07-13T21:36:56,621 running build_py 2021-07-13T21:36:56,755 creating build 2021-07-13T21:36:56,756 creating build/lib.linux-armv7l-3.9 2021-07-13T21:36:56,756 creating build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,758 copying peas/arrayfuncs.py -> build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,760 copying peas/interface.py -> build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,763 copying peas/utilities.py -> build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,766 copying peas/scoring.py -> build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,769 copying peas/constants.py -> build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,771 copying peas/__init__.py -> build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,773 copying peas/choosing.py -> build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,776 copying peas/region_stats.py -> build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,779 copying peas/genomic_regions.py -> build/lib.linux-armv7l-3.9/peas 2021-07-13T21:36:56,782 running build_ext 2021-07-13T21:36:56,789 building 'peas.scoring_funcs_cython' extension 2021-07-13T21:36:56,790 creating build/temp.linux-armv7l-3.9 2021-07-13T21:36:56,790 creating build/temp.linux-armv7l-3.9/peas 2021-07-13T21:36:56,791 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c peas/my_array_funcs.c -o build/temp.linux-armv7l-3.9/peas/my_array_funcs.o -std=gnu99 -O3 -march=native -finline-functions 2021-07-13T21:36:56,935 peas/my_array_funcs.c:5:10: fatal error: my_array_funcs.h: No such file or directory 2021-07-13T21:36:56,935 5 | #include "my_array_funcs.h" 2021-07-13T21:36:56,935 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T21:36:56,935 compilation terminated. 2021-07-13T21:36:56,939 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-13T21:36:57,092 Building wheel for peas (setup.py): finished with status 'error' 2021-07-13T21:36:57,093 ERROR: Failed building wheel for peas 2021-07-13T21:36:57,094 Running setup.py clean for peas 2021-07-13T21:36:57,094 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5wks6vlg/peas_614a82465b5f49368fde90f3e2e3fe8c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5wks6vlg/peas_614a82465b5f49368fde90f3e2e3fe8c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-13T21:36:58,785 ******************************************************************************** 2021-07-13T21:36:58,786 * PEAS 0.1.0 by Dylan Skola * 2021-07-13T21:36:58,786 ******************************************************************************** 2021-07-13T21:36:59,295 ['/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include'] 2021-07-13T21:36:59,366 Warning: 'classifiers' should be a list, got type 'tuple' 2021-07-13T21:36:59,521 running clean 2021-07-13T21:36:59,524 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-13T21:36:59,526 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-13T21:36:59,532 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-13T21:36:59,533 'build/scripts-3.9' does not exist -- can't clean it 2021-07-13T21:36:59,533 removing 'build' 2021-07-13T21:36:59,661 Failed to build peas 2021-07-13T21:36:59,661 ERROR: Failed to build one or more wheels 2021-07-13T21:36:59,662 Exception information: 2021-07-13T21:36:59,662 Traceback (most recent call last): 2021-07-13T21:36:59,662 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T21:36:59,662 status = self.run(options, args) 2021-07-13T21:36:59,662 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T21:36:59,662 return func(self, options, args) 2021-07-13T21:36:59,662 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-13T21:36:59,662 raise CommandError( 2021-07-13T21:36:59,662 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-13T21:36:59,665 Removed build tracker: '/tmp/pip-req-tracker-tygq4mtu'