2021-07-13T21:54:35,966 Created temporary directory: /tmp/pip-ephem-wheel-cache-ovtnnsvr 2021-07-13T21:54:35,969 Created temporary directory: /tmp/pip-req-tracker-b1f8s5ot 2021-07-13T21:54:35,970 Initialized build tracking at /tmp/pip-req-tracker-b1f8s5ot 2021-07-13T21:54:35,970 Created build tracker: /tmp/pip-req-tracker-b1f8s5ot 2021-07-13T21:54:35,970 Entered build tracker: /tmp/pip-req-tracker-b1f8s5ot 2021-07-13T21:54:35,971 Created temporary directory: /tmp/pip-wheel-5oyraqs4 2021-07-13T21:54:36,002 1 location(s) to search for versions of denovonear: 2021-07-13T21:54:36,002 * https://pypi.org/simple/denovonear/ 2021-07-13T21:54:36,002 Fetching project page and analyzing links: https://pypi.org/simple/denovonear/ 2021-07-13T21:54:36,003 Getting page https://pypi.org/simple/denovonear/ 2021-07-13T21:54:36,005 Found index url https://pypi.org/simple 2021-07-13T21:54:36,188 Found link https://files.pythonhosted.org/packages/5f/25/aa72bf3769052c8002b830283a8bbacb2cd6e1a2a22c12ee9859022fece0/denovonear-0.5.0.tar.gz#sha256=a321123c913a0bde2c209e574d064032a65007545c9fe8f49ec2f0ea64c91e94 (from https://pypi.org/simple/denovonear/), version: 0.5.0 2021-07-13T21:54:36,188 Found link https://files.pythonhosted.org/packages/0a/62/5608d43d65589a21a7f6b725ec78fcce289da0e725280b7d874f8ddbe3ad/denovonear-0.5.1.tar.gz#sha256=c3c7922d17f3f1b7173077428b0721fb4d0c45fcc242b7d75a2c766c0f9a1853 (from https://pypi.org/simple/denovonear/), version: 0.5.1 2021-07-13T21:54:36,189 Found link https://files.pythonhosted.org/packages/75/b3/535a16bff66cb3cb259afae1d4e1003258b4cb4af7bc81c7b2c76adc6ff2/denovonear-0.5.2.tar.gz#sha256=c949e557ddf9691e6b48f00208f6e37f5d4d249ee8089873c6775fe67d20f661 (from https://pypi.org/simple/denovonear/), version: 0.5.2 2021-07-13T21:54:36,189 Found link https://files.pythonhosted.org/packages/38/f3/215256488f842106a640294ec42b9fe1fe4f7a7e8748b7ff6ac0374a717e/denovonear-0.5.3.tar.gz#sha256=da55e20be91e97f9a1bd83be32284afd89923d54113b00b1fe9295cbcbf662bc (from https://pypi.org/simple/denovonear/), version: 0.5.3 2021-07-13T21:54:36,190 Found link https://files.pythonhosted.org/packages/0a/ec/c9f261454f065ec4284084deffa852884382211030834ea1d29a785892de/denovonear-0.5.4.tar.gz#sha256=fa9333c246d3db5abe98d79be6bd4eeb5354e45f08421bebf7fe4f8c30ff5649 (from https://pypi.org/simple/denovonear/), version: 0.5.4 2021-07-13T21:54:36,190 Found link https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 (from https://pypi.org/simple/denovonear/), version: 0.6.0 2021-07-13T21:54:36,190 Found link https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 (from https://pypi.org/simple/denovonear/), version: 0.6.2 2021-07-13T21:54:36,191 Found link https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe (from https://pypi.org/simple/denovonear/), version: 0.6.3 2021-07-13T21:54:36,191 Found link https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 (from https://pypi.org/simple/denovonear/), version: 0.6.4 2021-07-13T21:54:36,192 Found link https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 (from https://pypi.org/simple/denovonear/), version: 0.7.0 2021-07-13T21:54:36,193 Found link https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.0 2021-07-13T21:54:36,193 Found link https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.1 2021-07-13T21:54:36,194 Found link https://files.pythonhosted.org/packages/ef/b4/e860d4a4ead9864f588d6a02e1d5f5f4faa83f7c90991c5665d0161cbd55/denovonear-0.8.2.tar.gz#sha256=9ad038ee99c90af080e3fe968015ab78f9d869474b65ec95dedcf63cdee8b05f (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.2 2021-07-13T21:54:36,195 Found link https://files.pythonhosted.org/packages/a8/fb/8601613cae1e1165ca87dd3f39442ae6f72768d1854cf05fc91fe54c74e3/denovonear-0.8.4.tar.gz#sha256=f725d7598a6470a5bff613253d1b7ebdf844c0ce592dfe31015e38e530e90be1 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.4 2021-07-13T21:54:36,196 Found link https://files.pythonhosted.org/packages/5e/40/6235d5a69a1954d94ffd5fe8db17ae0825866255cc69b8caf3057df33ec3/denovonear-0.8.5.tar.gz#sha256=dd656b8b43f511e26e701f7301b39f8c151893aab015f1f581ddc0a9a2ae5c13 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.5 2021-07-13T21:54:36,196 Found link https://files.pythonhosted.org/packages/51/a0/1e7699fe5b5a6ab27d2916c14ff76000d8026f85a668b1b50c7b51cdf187/denovonear-0.8.6.tar.gz#sha256=3241bfa633f723687359aa8928e7a68a82d2ffaac6eb6ce090401d9c6357fa2e (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.6 2021-07-13T21:54:36,197 Skipping link: not a file: https://pypi.org/simple/denovonear/ 2021-07-13T21:54:36,218 Given no hashes to check 1 links for project 'denovonear': discarding no candidates 2021-07-13T21:54:36,242 Collecting denovonear==0.6.4 2021-07-13T21:54:36,244 Created temporary directory: /tmp/pip-unpack-3tglocfk 2021-07-13T21:54:36,491 Downloading denovonear-0.6.4.tar.gz (214 kB) 2021-07-13T21:54:36,738 Added denovonear==0.6.4 from https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 to build tracker '/tmp/pip-req-tracker-b1f8s5ot' 2021-07-13T21:54:36,739 Running setup.py (path:/tmp/pip-wheel-5oyraqs4/denovonear_ca2b4ad178f348b7aed379dc3ac17779/setup.py) egg_info for package denovonear 2021-07-13T21:54:36,740 Created temporary directory: /tmp/pip-pip-egg-info-iy52fuf8 2021-07-13T21:54:36,740 Running command python setup.py egg_info 2021-07-13T21:54:38,648 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5oyraqs4/denovonear_ca2b4ad178f348b7aed379dc3ac17779/denovonear/site_specific_rates.pyx 2021-07-13T21:54:38,648 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T21:54:39,538 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5oyraqs4/denovonear_ca2b4ad178f348b7aed379dc3ac17779/denovonear/weights.pxd 2021-07-13T21:54:39,538 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T21:54:40,344 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5oyraqs4/denovonear_ca2b4ad178f348b7aed379dc3ac17779/denovonear/transcript.pxd 2021-07-13T21:54:40,344 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T21:54:42,009 Compiling denovonear/weights.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T21:54:42,009 Compiling denovonear/transcript.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T21:54:42,010 Compiling denovonear/site_specific_rates.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T21:54:42,010 [1/3] Cythonizing denovonear/site_specific_rates.pyx 2021-07-13T21:54:42,010 [2/3] Cythonizing denovonear/weights.pyx 2021-07-13T21:54:42,010 [3/3] Cythonizing denovonear/transcript.pyx 2021-07-13T21:54:42,204 running egg_info 2021-07-13T21:54:42,207 creating /tmp/pip-pip-egg-info-iy52fuf8/denovonear.egg-info 2021-07-13T21:54:42,209 writing /tmp/pip-pip-egg-info-iy52fuf8/denovonear.egg-info/PKG-INFO 2021-07-13T21:54:42,212 writing dependency_links to /tmp/pip-pip-egg-info-iy52fuf8/denovonear.egg-info/dependency_links.txt 2021-07-13T21:54:42,214 writing entry points to /tmp/pip-pip-egg-info-iy52fuf8/denovonear.egg-info/entry_points.txt 2021-07-13T21:54:42,215 writing requirements to /tmp/pip-pip-egg-info-iy52fuf8/denovonear.egg-info/requires.txt 2021-07-13T21:54:42,217 writing top-level names to /tmp/pip-pip-egg-info-iy52fuf8/denovonear.egg-info/top_level.txt 2021-07-13T21:54:42,219 writing manifest file '/tmp/pip-pip-egg-info-iy52fuf8/denovonear.egg-info/SOURCES.txt' 2021-07-13T21:54:42,384 reading manifest file '/tmp/pip-pip-egg-info-iy52fuf8/denovonear.egg-info/SOURCES.txt' 2021-07-13T21:54:42,386 reading manifest template 'MANIFEST.in' 2021-07-13T21:54:42,400 writing manifest file '/tmp/pip-pip-egg-info-iy52fuf8/denovonear.egg-info/SOURCES.txt' 2021-07-13T21:54:42,624 Source in /tmp/pip-wheel-5oyraqs4/denovonear_ca2b4ad178f348b7aed379dc3ac17779 has version 0.6.4, which satisfies requirement denovonear==0.6.4 from https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 2021-07-13T21:54:42,625 Removed denovonear==0.6.4 from https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 from build tracker '/tmp/pip-req-tracker-b1f8s5ot' 2021-07-13T21:54:42,630 Created temporary directory: /tmp/pip-unpack-wkuox02v 2021-07-13T21:54:42,631 Building wheels for collected packages: denovonear 2021-07-13T21:54:42,635 Created temporary directory: /tmp/pip-wheel-u29y8z8y 2021-07-13T21:54:42,635 Building wheel for denovonear (setup.py): started 2021-07-13T21:54:42,636 Destination directory: /tmp/pip-wheel-u29y8z8y 2021-07-13T21:54:42,636 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5oyraqs4/denovonear_ca2b4ad178f348b7aed379dc3ac17779/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5oyraqs4/denovonear_ca2b4ad178f348b7aed379dc3ac17779/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-u29y8z8y 2021-07-13T21:54:44,539 running bdist_wheel 2021-07-13T21:54:44,545 running build 2021-07-13T21:54:44,545 running build_py 2021-07-13T21:54:44,693 creating build 2021-07-13T21:54:44,694 creating build/lib.linux-armv7l-3.9 2021-07-13T21:54:44,694 creating build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,695 copying denovonear/cluster_test.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,698 copying denovonear/log_transform_rates.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,700 copying denovonear/simulate.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,701 copying denovonear/load_de_novos.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,703 copying denovonear/__main__.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,706 copying denovonear/__init__.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,707 copying denovonear/load_gene.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,710 copying denovonear/ensembl_cache.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,713 copying denovonear/frameshift_rate.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,715 copying denovonear/ensembl_requester.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,718 copying denovonear/load_mutation_rates.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,721 creating build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T21:54:44,722 copying denovonear/gene_plot/diagram_plotter.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T21:54:44,725 copying denovonear/gene_plot/domains.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T21:54:44,727 copying denovonear/gene_plot/genomic.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T21:54:44,729 copying denovonear/gene_plot/interpro_requestor.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T21:54:44,732 copying denovonear/gene_plot/interpro_parser.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T21:54:44,734 copying denovonear/gene_plot/transcript.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T21:54:44,737 copying denovonear/gene_plot/__init__.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T21:54:44,738 copying denovonear/gene_plot/consequences.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T21:54:44,742 creating build/lib.linux-armv7l-3.9/denovonear/data 2021-07-13T21:54:44,743 copying denovonear/data/rates.txt -> build/lib.linux-armv7l-3.9/denovonear/data 2021-07-13T21:54:44,746 copying denovonear/weights.pxd -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,750 running build_ext 2021-07-13T21:54:44,757 building 'denovonear.weights' extension 2021-07-13T21:54:44,758 creating build/temp.linux-armv7l-3.9 2021-07-13T21:54:44,758 creating build/temp.linux-armv7l-3.9/denovonear 2021-07-13T21:54:44,759 creating build/temp.linux-armv7l-3.9/src 2021-07-13T21:54:44,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/weights.cpp -o build/temp.linux-armv7l-3.9/denovonear/weights.o -std=c++11 2021-07-13T21:54:52,337 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/simulate.cpp -o build/temp.linux-armv7l-3.9/src/simulate.o -std=c++11 2021-07-13T21:54:54,197 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-13T21:54:54,197 from /usr/include/c++/10/algorithm:62, 2021-07-13T21:54:54,197 from src/simulate.cpp:2: 2021-07-13T21:54:54,198 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-13T21:54:54,198 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,198 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-13T21:54:54,198 | ^~~~~~~~~~~~~ 2021-07-13T21:54:54,238 In file included from /usr/include/c++/10/algorithm:62, 2021-07-13T21:54:54,238 from src/simulate.cpp:2: 2021-07-13T21:54:54,238 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-13T21:54:54,239 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,239 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-13T21:54:54,239 | ^~~~~~~~~~~~~~~~ 2021-07-13T21:54:54,239 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,239 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,287 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-13T21:54:54,287 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,287 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-13T21:54:54,287 | ^~~~~~~~~~~~~~~~ 2021-07-13T21:54:54,288 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,288 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,288 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,288 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-13T21:54:54,289 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:54,533 In file included from /usr/include/c++/10/vector:72, 2021-07-13T21:54:54,534 from src/simulate.cpp:4: 2021-07-13T21:54:54,534 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T21:54:54,534 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T21:54:54,534 426 | vector<_Tp, _Alloc>:: 2021-07-13T21:54:54,535 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:54,621 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector _simulate_distribution(Chooser&, int, int)’: 2021-07-13T21:54:54,621 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,622 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T21:54:54,622 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:54,622 In file included from /usr/include/c++/10/algorithm:62, 2021-07-13T21:54:54,622 from src/simulate.cpp:2: 2021-07-13T21:54:54,623 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,623 1974 | std::__introsort_loop(__first, __last, 2021-07-13T21:54:54,623 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-13T21:54:54,623 1975 | std::__lg(__last - __first) * 2, 2021-07-13T21:54:54,623 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:54,624 1976 | __comp); 2021-07-13T21:54:54,624 | ~~~~~~~ 2021-07-13T21:54:54,624 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,624 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-13T21:54:54,625 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:54,625 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:54,625 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-13T21:54:54,625 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:55,192 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11 2021-07-13T21:54:57,242 In file included from /usr/include/c++/10/vector:72, 2021-07-13T21:54:57,242 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T21:54:57,243 from /usr/include/c++/10/random:49, 2021-07-13T21:54:57,243 from src/weighted_choice.cpp:1: 2021-07-13T21:54:57,243 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T21:54:57,243 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T21:54:57,243 426 | vector<_Tp, _Alloc>:: 2021-07-13T21:54:57,244 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:57,322 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T21:54:57,323 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T21:54:57,476 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T21:54:57,477 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T21:54:57,616 In file included from /usr/include/c++/10/vector:67, 2021-07-13T21:54:57,616 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T21:54:57,617 from /usr/include/c++/10/random:49, 2021-07-13T21:54:57,617 from src/weighted_choice.cpp:1: 2021-07-13T21:54:57,617 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’: 2021-07-13T21:54:57,617 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:57,618 1198 | _M_realloc_insert(end(), __x); 2021-07-13T21:54:57,618 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T21:54:57,618 In file included from /usr/include/c++/10/vector:72, 2021-07-13T21:54:57,618 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T21:54:57,619 from /usr/include/c++/10/random:49, 2021-07-13T21:54:57,619 from src/weighted_choice.cpp:1: 2021-07-13T21:54:57,619 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:57,619 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T21:54:57,619 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:57,710 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T21:54:57,710 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T21:54:57,711 426 | vector<_Tp, _Alloc>:: 2021-07-13T21:54:57,711 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:57,770 /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’: 2021-07-13T21:54:57,770 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:57,771 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T21:54:57,771 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T21:54:57,772 In file included from /usr/include/c++/10/vector:67, 2021-07-13T21:54:57,772 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T21:54:57,772 from /usr/include/c++/10/random:49, 2021-07-13T21:54:57,772 from src/weighted_choice.cpp:1: 2021-07-13T21:54:57,773 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:54:57,773 1198 | _M_realloc_insert(end(), __x); 2021-07-13T21:54:57,773 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T21:54:58,187 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/weights.o build/temp.linux-armv7l-3.9/src/simulate.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so 2021-07-13T21:54:58,635 building 'denovonear.transcript' extension 2021-07-13T21:54:58,636 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/transcript.cpp -o build/temp.linux-armv7l-3.9/denovonear/transcript.o -std=c++11 2021-07-13T21:55:21,651 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11 2021-07-13T21:55:30,475 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/transcript.o build/temp.linux-armv7l-3.9/src/tx.o -o build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so 2021-07-13T21:55:30,948 building 'denovonear.site_specific_rates' extension 2021-07-13T21:55:30,948 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/site_specific_rates.cpp -o build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o -std=c++11 2021-07-13T21:55:44,157 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/site_rates.cpp -o build/temp.linux-armv7l-3.9/src/site_rates.o -std=c++11 2021-07-13T21:55:51,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11 2021-07-13T21:56:00,061 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11 2021-07-13T21:56:02,161 In file included from /usr/include/c++/10/vector:72, 2021-07-13T21:56:02,161 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T21:56:02,162 from /usr/include/c++/10/random:49, 2021-07-13T21:56:02,162 from src/weighted_choice.cpp:1: 2021-07-13T21:56:02,162 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T21:56:02,162 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T21:56:02,162 426 | vector<_Tp, _Alloc>:: 2021-07-13T21:56:02,162 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T21:56:02,240 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T21:56:02,241 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T21:56:02,395 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T21:56:02,395 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T21:56:02,535 In file included from /usr/include/c++/10/vector:67, 2021-07-13T21:56:02,535 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T21:56:02,535 from /usr/include/c++/10/random:49, 2021-07-13T21:56:02,535 from src/weighted_choice.cpp:1: 2021-07-13T21:56:02,535 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’: 2021-07-13T21:56:02,536 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:56:02,536 1198 | _M_realloc_insert(end(), __x); 2021-07-13T21:56:02,536 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T21:56:02,536 In file included from /usr/include/c++/10/vector:72, 2021-07-13T21:56:02,537 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T21:56:02,537 from /usr/include/c++/10/random:49, 2021-07-13T21:56:02,537 from src/weighted_choice.cpp:1: 2021-07-13T21:56:02,537 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:56:02,537 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T21:56:02,537 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T21:56:02,628 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T21:56:02,629 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T21:56:02,629 426 | vector<_Tp, _Alloc>:: 2021-07-13T21:56:02,629 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T21:56:02,687 /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’: 2021-07-13T21:56:02,688 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:56:02,688 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T21:56:02,688 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T21:56:02,689 In file included from /usr/include/c++/10/vector:67, 2021-07-13T21:56:02,689 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T21:56:02,689 from /usr/include/c++/10/random:49, 2021-07-13T21:56:02,689 from src/weighted_choice.cpp:1: 2021-07-13T21:56:02,689 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T21:56:02,690 1198 | _M_realloc_insert(end(), __x); 2021-07-13T21:56:02,690 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T21:56:03,046 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o build/temp.linux-armv7l-3.9/src/site_rates.o build/temp.linux-armv7l-3.9/src/tx.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so 2021-07-13T21:56:03,611 installing to build/bdist.linux-armv7l/wheel 2021-07-13T21:56:03,611 running install 2021-07-13T21:56:03,613 running install_lib 2021-07-13T21:56:03,618 creating build/bdist.linux-armv7l 2021-07-13T21:56:03,619 creating build/bdist.linux-armv7l/wheel 2021-07-13T21:56:03,622 creating build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,623 copying build/lib.linux-armv7l-3.9/denovonear/cluster_test.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,626 copying build/lib.linux-armv7l-3.9/denovonear/log_transform_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,629 copying build/lib.linux-armv7l-3.9/denovonear/simulate.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,631 copying build/lib.linux-armv7l-3.9/denovonear/weights.pxd -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,634 creating build/bdist.linux-armv7l/wheel/denovonear/data 2021-07-13T21:56:03,635 copying build/lib.linux-armv7l-3.9/denovonear/data/rates.txt -> build/bdist.linux-armv7l/wheel/denovonear/data 2021-07-13T21:56:03,639 copying build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,715 copying build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,787 copying build/lib.linux-armv7l-3.9/denovonear/load_de_novos.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,790 copying build/lib.linux-armv7l-3.9/denovonear/__main__.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,794 copying build/lib.linux-armv7l-3.9/denovonear/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,796 copying build/lib.linux-armv7l-3.9/denovonear/load_gene.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,800 copying build/lib.linux-armv7l-3.9/denovonear/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,804 creating build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T21:56:03,805 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/diagram_plotter.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T21:56:03,808 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/domains.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T21:56:03,810 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/genomic.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T21:56:03,813 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/interpro_requestor.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T21:56:03,816 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/interpro_parser.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T21:56:03,819 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/transcript.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T21:56:03,822 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T21:56:03,824 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/consequences.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T21:56:03,827 copying build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,853 copying build/lib.linux-armv7l-3.9/denovonear/frameshift_rate.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,855 copying build/lib.linux-armv7l-3.9/denovonear/ensembl_requester.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,858 copying build/lib.linux-armv7l-3.9/denovonear/load_mutation_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T21:56:03,860 running install_egg_info 2021-07-13T21:56:03,884 running egg_info 2021-07-13T21:56:03,885 writing denovonear.egg-info/PKG-INFO 2021-07-13T21:56:03,887 writing dependency_links to denovonear.egg-info/dependency_links.txt 2021-07-13T21:56:03,889 writing entry points to denovonear.egg-info/entry_points.txt 2021-07-13T21:56:03,890 writing requirements to denovonear.egg-info/requires.txt 2021-07-13T21:56:03,891 writing top-level names to denovonear.egg-info/top_level.txt 2021-07-13T21:56:03,903 reading manifest file 'denovonear.egg-info/SOURCES.txt' 2021-07-13T21:56:03,912 reading manifest template 'MANIFEST.in' 2021-07-13T21:56:03,925 writing manifest file 'denovonear.egg-info/SOURCES.txt' 2021-07-13T21:56:03,927 Copying denovonear.egg-info to build/bdist.linux-armv7l/wheel/denovonear-0.6.4-py3.9.egg-info 2021-07-13T21:56:03,944 running install_scripts 2021-07-13T21:56:03,996 creating build/bdist.linux-armv7l/wheel/denovonear-0.6.4.dist-info/WHEEL 2021-07-13T21:56:03,999 creating '/tmp/pip-wheel-u29y8z8y/denovonear-0.6.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-13T21:56:04,002 adding 'denovonear/__init__.py' 2021-07-13T21:56:04,004 adding 'denovonear/__main__.py' 2021-07-13T21:56:04,006 adding 'denovonear/cluster_test.py' 2021-07-13T21:56:04,008 adding 'denovonear/ensembl_cache.py' 2021-07-13T21:56:04,010 adding 'denovonear/ensembl_requester.py' 2021-07-13T21:56:04,011 adding 'denovonear/frameshift_rate.py' 2021-07-13T21:56:04,013 adding 'denovonear/load_de_novos.py' 2021-07-13T21:56:04,015 adding 'denovonear/load_gene.py' 2021-07-13T21:56:04,016 adding 'denovonear/load_mutation_rates.py' 2021-07-13T21:56:04,017 adding 'denovonear/log_transform_rates.py' 2021-07-13T21:56:04,019 adding 'denovonear/simulate.py' 2021-07-13T21:56:04,560 adding 'denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T21:56:05,063 adding 'denovonear/transcript.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T21:56:05,281 adding 'denovonear/weights.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T21:56:05,290 adding 'denovonear/weights.pxd' 2021-07-13T21:56:05,292 adding 'denovonear/data/rates.txt' 2021-07-13T21:56:05,294 adding 'denovonear/gene_plot/__init__.py' 2021-07-13T21:56:05,295 adding 'denovonear/gene_plot/consequences.py' 2021-07-13T21:56:05,297 adding 'denovonear/gene_plot/diagram_plotter.py' 2021-07-13T21:56:05,299 adding 'denovonear/gene_plot/domains.py' 2021-07-13T21:56:05,300 adding 'denovonear/gene_plot/genomic.py' 2021-07-13T21:56:05,302 adding 'denovonear/gene_plot/interpro_parser.py' 2021-07-13T21:56:05,303 adding 'denovonear/gene_plot/interpro_requestor.py' 2021-07-13T21:56:05,304 adding 'denovonear/gene_plot/transcript.py' 2021-07-13T21:56:05,307 adding 'denovonear-0.6.4.dist-info/METADATA' 2021-07-13T21:56:05,308 adding 'denovonear-0.6.4.dist-info/WHEEL' 2021-07-13T21:56:05,309 adding 'denovonear-0.6.4.dist-info/entry_points.txt' 2021-07-13T21:56:05,310 adding 'denovonear-0.6.4.dist-info/top_level.txt' 2021-07-13T21:56:05,311 adding 'denovonear-0.6.4.dist-info/RECORD' 2021-07-13T21:56:05,344 removing build/bdist.linux-armv7l/wheel 2021-07-13T21:56:05,477 Building wheel for denovonear (setup.py): finished with status 'done' 2021-07-13T21:56:05,516 Created wheel for denovonear: filename=denovonear-0.6.4-cp39-cp39-linux_armv7l.whl size=2237353 sha256=e710d0360a3cfcf351ce541c46301911c71330e456e190589f9588625dcbeb81 2021-07-13T21:56:05,517 Stored in directory: /tmp/pip-ephem-wheel-cache-ovtnnsvr/wheels/7e/f7/b4/d242199ad61a4be5ebbe7d85ae24c9d95899c1166f8d5bc7d2 2021-07-13T21:56:05,530 Successfully built denovonear 2021-07-13T21:56:05,629 Removed build tracker: '/tmp/pip-req-tracker-b1f8s5ot'