2021-07-13T22:04:05,416 Created temporary directory: /tmp/pip-ephem-wheel-cache-pj14dsgi
2021-07-13T22:04:05,419 Created temporary directory: /tmp/pip-req-tracker-vn2kqh6v
2021-07-13T22:04:05,419 Initialized build tracking at /tmp/pip-req-tracker-vn2kqh6v
2021-07-13T22:04:05,420 Created build tracker: /tmp/pip-req-tracker-vn2kqh6v
2021-07-13T22:04:05,420 Entered build tracker: /tmp/pip-req-tracker-vn2kqh6v
2021-07-13T22:04:05,420 Created temporary directory: /tmp/pip-wheel-g7v1o3be
2021-07-13T22:04:05,450 1 location(s) to search for versions of ampal:
2021-07-13T22:04:05,450 * https://pypi.org/simple/ampal/
2021-07-13T22:04:05,451 Fetching project page and analyzing links: https://pypi.org/simple/ampal/
2021-07-13T22:04:05,451 Getting page https://pypi.org/simple/ampal/
2021-07-13T22:04:05,453 Found index url https://pypi.org/simple
2021-07-13T22:04:05,543   Found link https://files.pythonhosted.org/packages/3f/e5/03da3a77bba138c165451d3f8efb7fd32818aea4a6212b420c558e9088d8/AMPAL-1.0.0.tar.gz#sha256=3d8e8df30a9534d75b9771dfd45bd48706cc2409f8e7573da7a0951be85bf29d (from https://pypi.org/simple/ampal/), version: 1.0.0
2021-07-13T22:04:05,543   Found link https://files.pythonhosted.org/packages/c2/90/2aecb8bdeab8de4f896f38fc792b434292f0f96a86cd3b860c849f4cfd55/AMPAL-1.0.1.tar.gz#sha256=58e351534d49ef3a7b5267dd32462c20852a63213a36acfbf670e447009cac21 (from https://pypi.org/simple/ampal/), version: 1.0.1
2021-07-13T22:04:05,544   Found link https://files.pythonhosted.org/packages/29/39/ac32680ba515731a81942c3a1bb8d0731fc0da02185885794ccf51dd604b/AMPAL-1.1.0.tar.gz#sha256=ab6beac3f730bc12a65d821a8b3d7ca68643e29179f08fef0607d45078bf1022 (from https://pypi.org/simple/ampal/), version: 1.1.0
2021-07-13T22:04:05,544   Found link https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz#sha256=9a62def0cbdd4b000c0d1e7a76441e7ba873f0da9ef018af1871638bb13214a7 (from https://pypi.org/simple/ampal/), version: 1.2.0
2021-07-13T22:04:05,544   Found link https://files.pythonhosted.org/packages/a4/9a/940d9cd5af9177e35487a99bf8bf0ae4c80b28eeca70c266ebc2f341cd4d/AMPAL-1.3.0.tar.gz#sha256=8f5a806e642f8978a8ef6ba678e3187e9fc4a6947c92e6fd35c2ccf03fa89276 (from https://pypi.org/simple/ampal/), version: 1.3.0
2021-07-13T22:04:05,544   Found link https://files.pythonhosted.org/packages/c9/14/728e14ff9e6c3372082ffc88a2f78016b05143f0d6bee5c432c002314169/AMPAL-1.4.0.tar.gz#sha256=ab0f6ee5284e923dac5f599c1e9c93dc2925ed3e63f156a8dd7cc58d69a0c5cc (from https://pypi.org/simple/ampal/), version: 1.4.0
2021-07-13T22:04:05,545 Skipping link: not a file: https://pypi.org/simple/ampal/
2021-07-13T22:04:05,563 Given no hashes to check 1 links for project 'ampal': discarding no candidates
2021-07-13T22:04:05,585 Collecting ampal==1.4.0
2021-07-13T22:04:05,586   Created temporary directory: /tmp/pip-unpack-_qf_uwjv
2021-07-13T22:04:05,630   Downloading AMPAL-1.4.0.tar.gz (1.2 MB)
2021-07-13T22:04:06,092   Added ampal==1.4.0 from https://files.pythonhosted.org/packages/c9/14/728e14ff9e6c3372082ffc88a2f78016b05143f0d6bee5c432c002314169/AMPAL-1.4.0.tar.gz#sha256=ab0f6ee5284e923dac5f599c1e9c93dc2925ed3e63f156a8dd7cc58d69a0c5cc to build tracker '/tmp/pip-req-tracker-vn2kqh6v'
2021-07-13T22:04:06,093     Running setup.py (path:/tmp/pip-wheel-g7v1o3be/ampal_1dbdfcf975814ca1bf4ef5f4e37f8188/setup.py) egg_info for package ampal
2021-07-13T22:04:06,094     Created temporary directory: /tmp/pip-pip-egg-info-u2_grbjl
2021-07-13T22:04:06,094     Running command python setup.py egg_info
2021-07-13T22:04:07,901     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-g7v1o3be/ampal_1dbdfcf975814ca1bf4ef5f4e37f8188/src/ampal/geometry.pyx
2021-07-13T22:04:07,902       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:04:11,341     Compiling src/ampal/geometry.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/math.pxd.
2021-07-13T22:04:11,341     [1/1] Cythonizing src/ampal/geometry.pyx
2021-07-13T22:04:11,536     running egg_info
2021-07-13T22:04:11,539     creating /tmp/pip-pip-egg-info-u2_grbjl/AMPAL.egg-info
2021-07-13T22:04:11,540     writing /tmp/pip-pip-egg-info-u2_grbjl/AMPAL.egg-info/PKG-INFO
2021-07-13T22:04:11,543     writing dependency_links to /tmp/pip-pip-egg-info-u2_grbjl/AMPAL.egg-info/dependency_links.txt
2021-07-13T22:04:11,545     writing requirements to /tmp/pip-pip-egg-info-u2_grbjl/AMPAL.egg-info/requires.txt
2021-07-13T22:04:11,546     writing top-level names to /tmp/pip-pip-egg-info-u2_grbjl/AMPAL.egg-info/top_level.txt
2021-07-13T22:04:11,547     writing manifest file '/tmp/pip-pip-egg-info-u2_grbjl/AMPAL.egg-info/SOURCES.txt'
2021-07-13T22:04:11,732     reading manifest file '/tmp/pip-pip-egg-info-u2_grbjl/AMPAL.egg-info/SOURCES.txt'
2021-07-13T22:04:11,734     reading manifest template 'MANIFEST.in'
2021-07-13T22:04:11,736     warning: no files found matching 'LICENSE.txt'
2021-07-13T22:04:11,768     writing manifest file '/tmp/pip-pip-egg-info-u2_grbjl/AMPAL.egg-info/SOURCES.txt'
2021-07-13T22:04:11,967   Source in /tmp/pip-wheel-g7v1o3be/ampal_1dbdfcf975814ca1bf4ef5f4e37f8188 has version 1.4.0, which satisfies requirement ampal==1.4.0 from https://files.pythonhosted.org/packages/c9/14/728e14ff9e6c3372082ffc88a2f78016b05143f0d6bee5c432c002314169/AMPAL-1.4.0.tar.gz#sha256=ab0f6ee5284e923dac5f599c1e9c93dc2925ed3e63f156a8dd7cc58d69a0c5cc
2021-07-13T22:04:11,968   Removed ampal==1.4.0 from https://files.pythonhosted.org/packages/c9/14/728e14ff9e6c3372082ffc88a2f78016b05143f0d6bee5c432c002314169/AMPAL-1.4.0.tar.gz#sha256=ab0f6ee5284e923dac5f599c1e9c93dc2925ed3e63f156a8dd7cc58d69a0c5cc from build tracker '/tmp/pip-req-tracker-vn2kqh6v'
2021-07-13T22:04:11,972 Created temporary directory: /tmp/pip-unpack-5nj_su_y
2021-07-13T22:04:11,973 Building wheels for collected packages: ampal
2021-07-13T22:04:11,978   Created temporary directory: /tmp/pip-wheel-j1e_70mz
2021-07-13T22:04:11,978   Building wheel for ampal (setup.py): started
2021-07-13T22:04:11,978   Destination directory: /tmp/pip-wheel-j1e_70mz
2021-07-13T22:04:11,979   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-g7v1o3be/ampal_1dbdfcf975814ca1bf4ef5f4e37f8188/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-g7v1o3be/ampal_1dbdfcf975814ca1bf4ef5f4e37f8188/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-j1e_70mz
2021-07-13T22:04:13,903   running bdist_wheel
2021-07-13T22:04:13,909   running build
2021-07-13T22:04:13,910   running build_py
2021-07-13T22:04:14,076   creating build
2021-07-13T22:04:14,076   creating build/lib.linux-armv7l-3.9
2021-07-13T22:04:14,077   creating build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,078   copying src/ampal/amino_acids.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,081   copying src/ampal/pseudo_atoms.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,084   copying src/ampal/dssp.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,086   copying src/ampal/pdb_parser.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,089   copying src/ampal/assembly.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,092   copying src/ampal/protein.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,095   copying src/ampal/naccess.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,098   copying src/ampal/data.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,099   copying src/ampal/interactions.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,102   copying src/ampal/__init__.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,104   copying src/ampal/ampal_warnings.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,106   copying src/ampal/ligands.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,108   copying src/ampal/analyse_protein.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,112   copying src/ampal/base_ampal.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,115   copying src/ampal/align.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,117   copying src/ampal/nucleic_acid.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,119   running egg_info
2021-07-13T22:04:14,136   writing src/AMPAL.egg-info/PKG-INFO
2021-07-13T22:04:14,138   writing dependency_links to src/AMPAL.egg-info/dependency_links.txt
2021-07-13T22:04:14,140   writing requirements to src/AMPAL.egg-info/requires.txt
2021-07-13T22:04:14,142   writing top-level names to src/AMPAL.egg-info/top_level.txt
2021-07-13T22:04:14,179   reading manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2021-07-13T22:04:14,182   reading manifest template 'MANIFEST.in'
2021-07-13T22:04:14,183   warning: no files found matching 'LICENSE.txt'
2021-07-13T22:04:14,213   writing manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2021-07-13T22:04:14,218   copying src/ampal/.dssp.py.swp -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,222   copying src/ampal/geometry.c -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,254   copying src/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,316   copying src/ampal/geometry.pyx -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T22:04:14,319   creating build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,320   copying src/ampal/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,322   copying src/ampal/__pycache__/align.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,324   copying src/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,327   copying src/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,329   copying src/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,332   copying src/ampal/__pycache__/assembly.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,335   copying src/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,338   copying src/ampal/__pycache__/data.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,341   copying src/ampal/__pycache__/dssp.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,344   copying src/ampal/__pycache__/interactions.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,347   copying src/ampal/__pycache__/ligands.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,349   copying src/ampal/__pycache__/naccess.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,352   copying src/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,355   copying src/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,358   copying src/ampal/__pycache__/protein.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,361   copying src/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T22:04:14,364   creating build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T22:04:14,365   copying src/ampal/datafiles/amino_acids.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T22:04:14,371   copying src/ampal/datafiles/chemical_elements.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T22:04:14,376   copying src/ampal/datafiles/pdb_atom_column_format.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T22:04:14,382   running build_ext
2021-07-13T22:04:14,387   building 'ampal.geometry' extension
2021-07-13T22:04:14,388   creating build/temp.linux-armv7l-3.9
2021-07-13T22:04:14,388   creating build/temp.linux-armv7l-3.9/src
2021-07-13T22:04:14,389   creating build/temp.linux-armv7l-3.9/src/ampal
2021-07-13T22:04:14,389   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/ampal/geometry.c -o build/temp.linux-armv7l-3.9/src/ampal/geometry.o
2021-07-13T22:04:17,400   src/ampal/geometry.c:3694:18: warning: ‘__pyx_f_5ampal_8geometry__unit_vector’ defined but not used [-Wunused-function]
2021-07-13T22:04:17,401    3694 | static PyObject *__pyx_f_5ampal_8geometry__unit_vector(double *__pyx_v_a) {
2021-07-13T22:04:17,401         |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T22:04:17,402   src/ampal/geometry.c:2911:15: warning: ‘__pyx_f_5ampal_8geometry__dot_product_2d’ defined but not used [-Wunused-function]
2021-07-13T22:04:17,402    2911 | static double __pyx_f_5ampal_8geometry__dot_product_2d(double *__pyx_v_a, double *__pyx_v_b) {
2021-07-13T22:04:17,402         |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T22:04:58,778   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/ampal/geometry.o -o build/lib.linux-armv7l-3.9/ampal/geometry.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:04:59,036   installing to build/bdist.linux-armv7l/wheel
2021-07-13T22:04:59,036   running install
2021-07-13T22:04:59,037   running install_lib
2021-07-13T22:04:59,042   creating build/bdist.linux-armv7l
2021-07-13T22:04:59,042   creating build/bdist.linux-armv7l/wheel
2021-07-13T22:04:59,044   creating build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,046   copying build/lib.linux-armv7l-3.9/ampal/amino_acids.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,048   copying build/lib.linux-armv7l-3.9/ampal/pseudo_atoms.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,052   creating build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T22:04:59,052   copying build/lib.linux-armv7l-3.9/ampal/datafiles/chemical_elements.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T22:04:59,056   copying build/lib.linux-armv7l-3.9/ampal/datafiles/amino_acids.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T22:04:59,061   copying build/lib.linux-armv7l-3.9/ampal/datafiles/pdb_atom_column_format.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T22:04:59,065   copying build/lib.linux-armv7l-3.9/ampal/dssp.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,067   copying build/lib.linux-armv7l-3.9/ampal/pdb_parser.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,070   copying build/lib.linux-armv7l-3.9/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,139   copying build/lib.linux-armv7l-3.9/ampal/assembly.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,141   copying build/lib.linux-armv7l-3.9/ampal/.dssp.py.swp -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,144   copying build/lib.linux-armv7l-3.9/ampal/protein.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,147   copying build/lib.linux-armv7l-3.9/ampal/geometry.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,202   copying build/lib.linux-armv7l-3.9/ampal/naccess.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,204   copying build/lib.linux-armv7l-3.9/ampal/data.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,207   creating build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,208   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/interactions.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,210   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/align.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,212   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/naccess.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,214   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,217   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/assembly.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,219   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,221   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,224   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,227   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,230   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/data.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,232   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,235   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,237   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/dssp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,240   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,243   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/ligands.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,245   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T22:04:59,248   copying build/lib.linux-armv7l-3.9/ampal/geometry.c -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,288   copying build/lib.linux-armv7l-3.9/ampal/interactions.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,290   copying build/lib.linux-armv7l-3.9/ampal/__init__.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,292   copying build/lib.linux-armv7l-3.9/ampal/ampal_warnings.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,294   copying build/lib.linux-armv7l-3.9/ampal/ligands.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,296   copying build/lib.linux-armv7l-3.9/ampal/geometry.pyx -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,299   copying build/lib.linux-armv7l-3.9/ampal/analyse_protein.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,301   copying build/lib.linux-armv7l-3.9/ampal/base_ampal.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,303   copying build/lib.linux-armv7l-3.9/ampal/align.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,306   copying build/lib.linux-armv7l-3.9/ampal/nucleic_acid.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T22:04:59,308   running install_egg_info
2021-07-13T22:04:59,314   Copying src/AMPAL.egg-info to build/bdist.linux-armv7l/wheel/AMPAL-1.4.0-py3.9.egg-info
2021-07-13T22:04:59,330   running install_scripts
2021-07-13T22:04:59,375   creating build/bdist.linux-armv7l/wheel/AMPAL-1.4.0.dist-info/WHEEL
2021-07-13T22:04:59,378   creating '/tmp/pip-wheel-j1e_70mz/AMPAL-1.4.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T22:04:59,383   adding 'ampal/.dssp.py.swp'
2021-07-13T22:04:59,384   adding 'ampal/__init__.py'
2021-07-13T22:04:59,386   adding 'ampal/align.py'
2021-07-13T22:04:59,389   adding 'ampal/amino_acids.py'
2021-07-13T22:04:59,390   adding 'ampal/ampal_warnings.py'
2021-07-13T22:04:59,393   adding 'ampal/analyse_protein.py'
2021-07-13T22:04:59,396   adding 'ampal/assembly.py'
2021-07-13T22:04:59,400   adding 'ampal/base_ampal.py'
2021-07-13T22:04:59,402   adding 'ampal/data.py'
2021-07-13T22:04:59,403   adding 'ampal/dssp.py'
2021-07-13T22:04:59,520   adding 'ampal/geometry.c'
2021-07-13T22:04:59,949   adding 'ampal/geometry.cpython-36m-x86_64-linux-gnu.so'
2021-07-13T22:05:00,467   adding 'ampal/geometry.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:05:00,495   adding 'ampal/geometry.pyx'
2021-07-13T22:05:00,497   adding 'ampal/interactions.py'
2021-07-13T22:05:00,498   adding 'ampal/ligands.py'
2021-07-13T22:05:00,500   adding 'ampal/naccess.py'
2021-07-13T22:05:00,501   adding 'ampal/nucleic_acid.py'
2021-07-13T22:05:00,504   adding 'ampal/pdb_parser.py'
2021-07-13T22:05:00,508   adding 'ampal/protein.py'
2021-07-13T22:05:00,510   adding 'ampal/pseudo_atoms.py'
2021-07-13T22:05:00,513   adding 'ampal/__pycache__/__init__.cpython-36.pyc'
2021-07-13T22:05:00,514   adding 'ampal/__pycache__/align.cpython-36.pyc'
2021-07-13T22:05:00,516   adding 'ampal/__pycache__/amino_acids.cpython-36.pyc'
2021-07-13T22:05:00,518   adding 'ampal/__pycache__/ampal_warnings.cpython-36.pyc'
2021-07-13T22:05:00,521   adding 'ampal/__pycache__/analyse_protein.cpython-36.pyc'
2021-07-13T22:05:00,525   adding 'ampal/__pycache__/assembly.cpython-36.pyc'
2021-07-13T22:05:00,529   adding 'ampal/__pycache__/base_ampal.cpython-36.pyc'
2021-07-13T22:05:00,530   adding 'ampal/__pycache__/data.cpython-36.pyc'
2021-07-13T22:05:00,532   adding 'ampal/__pycache__/dssp.cpython-36.pyc'
2021-07-13T22:05:00,534   adding 'ampal/__pycache__/interactions.cpython-36.pyc'
2021-07-13T22:05:00,536   adding 'ampal/__pycache__/ligands.cpython-36.pyc'
2021-07-13T22:05:00,537   adding 'ampal/__pycache__/naccess.cpython-36.pyc'
2021-07-13T22:05:00,539   adding 'ampal/__pycache__/nucleic_acid.cpython-36.pyc'
2021-07-13T22:05:00,541   adding 'ampal/__pycache__/pdb_parser.cpython-36.pyc'
2021-07-13T22:05:00,546   adding 'ampal/__pycache__/protein.cpython-36.pyc'
2021-07-13T22:05:00,549   adding 'ampal/__pycache__/pseudo_atoms.cpython-36.pyc'
2021-07-13T22:05:00,557   adding 'ampal/datafiles/amino_acids.json'
2021-07-13T22:05:00,562   adding 'ampal/datafiles/chemical_elements.json'
2021-07-13T22:05:00,582   adding 'ampal/datafiles/pdb_atom_column_format.json'
2021-07-13T22:05:00,584   adding 'AMPAL-1.4.0.dist-info/METADATA'
2021-07-13T22:05:00,585   adding 'AMPAL-1.4.0.dist-info/WHEEL'
2021-07-13T22:05:00,585   adding 'AMPAL-1.4.0.dist-info/top_level.txt'
2021-07-13T22:05:00,586   adding 'AMPAL-1.4.0.dist-info/RECORD'
2021-07-13T22:05:00,623   removing build/bdist.linux-armv7l/wheel
2021-07-13T22:05:00,754   Building wheel for ampal (setup.py): finished with status 'done'
2021-07-13T22:05:00,783   Created wheel for ampal: filename=AMPAL-1.4.0-cp39-cp39-linux_armv7l.whl size=2121926 sha256=cf12ec38c08489ab3442a6bfb22e51ec2ce71637c16664f56a6bbc9b29d183b1
2021-07-13T22:05:00,783   Stored in directory: /tmp/pip-ephem-wheel-cache-pj14dsgi/wheels/26/06/fd/557fea11723f3a2820ce63fc43272a1ea7d9208aa43d118263
2021-07-13T22:05:00,795 Successfully built ampal
2021-07-13T22:05:00,863 Removed build tracker: '/tmp/pip-req-tracker-vn2kqh6v'