2021-07-13T22:09:11,903 Created temporary directory: /tmp/pip-ephem-wheel-cache-epmfecqc 2021-07-13T22:09:11,908 Created temporary directory: /tmp/pip-req-tracker-6uu3u1lu 2021-07-13T22:09:11,908 Initialized build tracking at /tmp/pip-req-tracker-6uu3u1lu 2021-07-13T22:09:11,908 Created build tracker: /tmp/pip-req-tracker-6uu3u1lu 2021-07-13T22:09:11,909 Entered build tracker: /tmp/pip-req-tracker-6uu3u1lu 2021-07-13T22:09:11,909 Created temporary directory: /tmp/pip-wheel-o4vgaq3f 2021-07-13T22:09:11,946 1 location(s) to search for versions of biom-format: 2021-07-13T22:09:11,946 * https://pypi.org/simple/biom-format/ 2021-07-13T22:09:11,947 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-13T22:09:11,948 Getting page https://pypi.org/simple/biom-format/ 2021-07-13T22:09:11,950 Found index url https://pypi.org/simple 2021-07-13T22:09:12,149 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-13T22:09:12,150 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-13T22:09:12,150 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-13T22:09:12,151 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-13T22:09:12,151 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-13T22:09:12,152 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-13T22:09:12,152 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-13T22:09:12,153 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-13T22:09:12,153 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-13T22:09:12,154 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-13T22:09:12,154 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-13T22:09:12,155 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-13T22:09:12,177 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-13T22:09:12,178 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-13T22:09:12,179 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-13T22:09:12,179 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-13T22:09:12,180 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-13T22:09:12,180 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-13T22:09:12,181 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-13T22:09:12,185 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-13T22:09:12,214 Collecting biom-format==2.1.7 2021-07-13T22:09:12,216 Created temporary directory: /tmp/pip-unpack-afz4he9o 2021-07-13T22:09:14,105 Downloading biom-format-2.1.7.tar.gz (11.8 MB) 2021-07-13T22:09:18,534 Added biom-format==2.1.7 from https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 to build tracker '/tmp/pip-req-tracker-6uu3u1lu' 2021-07-13T22:09:18,536 Running setup.py (path:/tmp/pip-wheel-o4vgaq3f/biom-format_8483ed3463fa4f84b50bf365cb1d1577/setup.py) egg_info for package biom-format 2021-07-13T22:09:18,537 Created temporary directory: /tmp/pip-pip-egg-info-0avvxvob 2021-07-13T22:09:18,537 Running command python setup.py egg_info 2021-07-13T22:09:20,098 running egg_info 2021-07-13T22:09:20,100 creating /tmp/pip-pip-egg-info-0avvxvob/biom_format.egg-info 2021-07-13T22:09:20,101 writing /tmp/pip-pip-egg-info-0avvxvob/biom_format.egg-info/PKG-INFO 2021-07-13T22:09:20,104 writing dependency_links to /tmp/pip-pip-egg-info-0avvxvob/biom_format.egg-info/dependency_links.txt 2021-07-13T22:09:20,105 writing entry points to /tmp/pip-pip-egg-info-0avvxvob/biom_format.egg-info/entry_points.txt 2021-07-13T22:09:20,106 writing requirements to /tmp/pip-pip-egg-info-0avvxvob/biom_format.egg-info/requires.txt 2021-07-13T22:09:20,107 writing top-level names to /tmp/pip-pip-egg-info-0avvxvob/biom_format.egg-info/top_level.txt 2021-07-13T22:09:20,109 writing manifest file '/tmp/pip-pip-egg-info-0avvxvob/biom_format.egg-info/SOURCES.txt' 2021-07-13T22:09:20,534 reading manifest file '/tmp/pip-pip-egg-info-0avvxvob/biom_format.egg-info/SOURCES.txt' 2021-07-13T22:09:20,536 reading manifest template 'MANIFEST.in' 2021-07-13T22:09:20,547 warning: no directories found matching 'support_files' 2021-07-13T22:09:20,557 warning: no directories found matching 'tests/test_data' 2021-07-13T22:09:20,557 no previously-included directories found matching 'docs/_build' 2021-07-13T22:09:20,559 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-13T22:09:20,560 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-13T22:09:20,561 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-13T22:09:20,562 warning: no previously-included files matching '*.so' found anywhere in distribution 2021-07-13T22:09:20,563 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2021-07-13T22:09:20,563 adding license file 'COPYING.txt' 2021-07-13T22:09:20,572 writing manifest file '/tmp/pip-pip-egg-info-0avvxvob/biom_format.egg-info/SOURCES.txt' 2021-07-13T22:09:20,693 Source in /tmp/pip-wheel-o4vgaq3f/biom-format_8483ed3463fa4f84b50bf365cb1d1577 has version 2.1.7, which satisfies requirement biom-format==2.1.7 from https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 2021-07-13T22:09:20,694 Removed biom-format==2.1.7 from https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 from build tracker '/tmp/pip-req-tracker-6uu3u1lu' 2021-07-13T22:09:20,699 Created temporary directory: /tmp/pip-unpack-aqgjqvb3 2021-07-13T22:09:20,700 Building wheels for collected packages: biom-format 2021-07-13T22:09:20,704 Created temporary directory: /tmp/pip-wheel-f32q988p 2021-07-13T22:09:20,704 Building wheel for biom-format (setup.py): started 2021-07-13T22:09:20,705 Destination directory: /tmp/pip-wheel-f32q988p 2021-07-13T22:09:20,705 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-o4vgaq3f/biom-format_8483ed3463fa4f84b50bf365cb1d1577/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-o4vgaq3f/biom-format_8483ed3463fa4f84b50bf365cb1d1577/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-f32q988p 2021-07-13T22:09:22,475 running bdist_wheel 2021-07-13T22:09:22,740 running build 2021-07-13T22:09:22,740 running build_py 2021-07-13T22:09:22,938 creating build 2021-07-13T22:09:22,938 creating build/lib.linux-armv7l-3.9 2021-07-13T22:09:22,939 creating build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:22,943 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:22,954 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:22,956 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:22,960 copying biom/err.py -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:22,964 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:22,967 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:22,971 creating build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:22,972 copying biom/cli/table_validator.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:22,983 copying biom/cli/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:22,986 copying biom/cli/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:22,989 copying biom/cli/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:22,993 copying biom/cli/__init__.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:22,995 copying biom/cli/util.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:22,998 copying biom/cli/table_ids.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:23,000 copying biom/cli/table_normalizer.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:23,003 copying biom/cli/table_head.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:23,006 copying biom/cli/uc_processor.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:23,009 copying biom/cli/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:23,012 copying biom/cli/table_converter.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-13T22:09:23,016 creating build/lib.linux-armv7l-3.9/biom/tests 2021-07-13T22:09:23,018 copying biom/tests/test_table.py -> build/lib.linux-armv7l-3.9/biom/tests 2021-07-13T22:09:23,025 copying biom/tests/__init__.py -> build/lib.linux-armv7l-3.9/biom/tests 2021-07-13T22:09:23,027 copying biom/tests/test_parse.py -> build/lib.linux-armv7l-3.9/biom/tests 2021-07-13T22:09:23,031 copying biom/tests/test_util.py -> build/lib.linux-armv7l-3.9/biom/tests 2021-07-13T22:09:23,034 copying biom/tests/test_err.py -> build/lib.linux-armv7l-3.9/biom/tests 2021-07-13T22:09:23,037 copying biom/tests/long_lines.py -> build/lib.linux-armv7l-3.9/biom/tests 2021-07-13T22:09:23,040 creating build/lib.linux-armv7l-3.9/biom/tests/test_data 2021-07-13T22:09:23,040 copying biom/tests/test_data/__init__.py -> build/lib.linux-armv7l-3.9/biom/tests/test_data 2021-07-13T22:09:23,043 creating build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,044 copying biom/tests/test_cli/test_add_metadata.py -> build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,046 copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,048 copying biom/tests/test_cli/__init__.py -> build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,050 copying biom/tests/test_cli/test_summarize_table.py -> build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,053 copying biom/tests/test_cli/test_table_converter.py -> build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,055 copying biom/tests/test_cli/test_uc_processor.py -> build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,057 copying biom/tests/test_cli/test_subset_table.py -> build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,060 copying biom/tests/test_cli/test_show_install_info.py -> build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,061 copying biom/tests/test_cli/test_validate_table.py -> build/lib.linux-armv7l-3.9/biom/tests/test_cli 2021-07-13T22:09:23,064 running egg_info 2021-07-13T22:09:23,078 writing biom_format.egg-info/PKG-INFO 2021-07-13T22:09:23,080 writing dependency_links to biom_format.egg-info/dependency_links.txt 2021-07-13T22:09:23,081 writing entry points to biom_format.egg-info/entry_points.txt 2021-07-13T22:09:23,083 writing requirements to biom_format.egg-info/requires.txt 2021-07-13T22:09:23,084 writing top-level names to biom_format.egg-info/top_level.txt 2021-07-13T22:09:23,094 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-13T22:09:23,100 reading manifest template 'MANIFEST.in' 2021-07-13T22:09:23,110 warning: no directories found matching 'support_files' 2021-07-13T22:09:23,116 warning: no directories found matching 'tests/test_data' 2021-07-13T22:09:23,117 no previously-included directories found matching 'docs/_build' 2021-07-13T22:09:23,118 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-13T22:09:23,120 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-13T22:09:23,121 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-13T22:09:23,122 warning: no previously-included files matching '*.so' found anywhere in distribution 2021-07-13T22:09:23,124 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2021-07-13T22:09:23,124 adding license file 'COPYING.txt' 2021-07-13T22:09:23,137 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-13T22:09:23,151 copying biom/_filter.c -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:23,163 copying biom/_filter.pyx -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:23,166 copying biom/_subsample.c -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:23,175 copying biom/_subsample.pyx -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:23,178 copying biom/_transform.c -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:23,188 copying biom/_transform.pyx -> build/lib.linux-armv7l-3.9/biom 2021-07-13T22:09:23,190 creating build/lib.linux-armv7l-3.9/biom/assets 2021-07-13T22:09:23,191 copying biom/assets/exercise_api.py -> build/lib.linux-armv7l-3.9/biom/assets 2021-07-13T22:09:23,194 copying biom/assets/exercise_cli.sh -> build/lib.linux-armv7l-3.9/biom/assets 2021-07-13T22:09:23,197 creating build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,198 copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,207 copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,225 copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,282 copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,306 copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,741 copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,837 copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,841 copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,854 copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,865 copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,880 copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,937 copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,982 copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,985 copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:23,995 copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,002 copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,013 copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,021 copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,040 copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,043 copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,053 copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,057 copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,067 copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,071 copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,082 copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,087 copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,098 copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,108 copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,123 copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,187 copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,249 copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,252 copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,258 copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,261 copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,267 copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,276 copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,282 copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,285 copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,290 copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,293 copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,298 copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,302 copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,307 copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,309 copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,314 copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,317 copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,322 copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,324 copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,329 copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,333 copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,346 copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,351 copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,363 copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,376 copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,402 copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,404 copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,411 copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,413 copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,419 copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,424 copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,432 copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,435 copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,440 copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,443 copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,447 copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,450 copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,454 copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,457 copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,461 copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,463 copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,467 copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,470 copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,473 copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,477 copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,488 copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,492 copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,502 copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,507 copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,519 copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,522 copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,528 copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,531 copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,535 copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,539 copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,544 copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,547 copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,552 copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,555 copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,559 copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,562 copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,567 copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,569 copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,574 copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,576 copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,580 copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,583 copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-3.9/biom/tests/bench_tables 2021-07-13T22:09:24,588 copying biom/tests/test_data/bad_table.txt -> build/lib.linux-armv7l-3.9/biom/tests/test_data 2021-07-13T22:09:24,590 copying biom/tests/test_data/bad_table.txt.gz -> build/lib.linux-armv7l-3.9/biom/tests/test_data 2021-07-13T22:09:24,593 copying biom/tests/test_data/empty.biom -> build/lib.linux-armv7l-3.9/biom/tests/test_data 2021-07-13T22:09:24,596 copying biom/tests/test_data/no-contents.biom -> build/lib.linux-armv7l-3.9/biom/tests/test_data 2021-07-13T22:09:24,598 copying biom/tests/test_data/test.biom -> build/lib.linux-armv7l-3.9/biom/tests/test_data 2021-07-13T22:09:24,602 copying biom/tests/test_data/test.json -> build/lib.linux-armv7l-3.9/biom/tests/test_data 2021-07-13T22:09:24,605 copying biom/tests/test_data/test.json.gz -> build/lib.linux-armv7l-3.9/biom/tests/test_data 2021-07-13T22:09:24,608 creating build/lib.linux-armv7l-3.9/biom/tests/test_cli/test_data 2021-07-13T22:09:24,608 copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.linux-armv7l-3.9/biom/tests/test_cli/test_data 2021-07-13T22:09:24,611 copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.linux-armv7l-3.9/biom/tests/test_cli/test_data 2021-07-13T22:09:24,614 copying biom/tests/test_cli/test_data/test.biom -> build/lib.linux-armv7l-3.9/biom/tests/test_cli/test_data 2021-07-13T22:09:24,618 copying biom/tests/test_cli/test_data/test.json -> build/lib.linux-armv7l-3.9/biom/tests/test_cli/test_data 2021-07-13T22:09:24,626 running build_ext 2021-07-13T22:09:24,632 building 'biom._filter' extension 2021-07-13T22:09:24,632 creating build/temp.linux-armv7l-3.9 2021-07-13T22:09:24,633 creating build/temp.linux-armv7l-3.9/biom 2021-07-13T22:09:24,634 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-13T22:09:25,055 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T22:09:25,055 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T22:09:25,056 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T22:09:25,056 from biom/_filter.c:435: 2021-07-13T22:09:25,056 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T22:09:25,056 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T22:09:25,056 | ^~~~~~~ 2021-07-13T22:09:25,259 biom/_filter.c: In function ‘__Pyx_PyCFunction_FastCall’: 2021-07-13T22:09:25,263 biom/_filter.c:7492:13: error: too many arguments to function ‘(PyObject * (*)(PyObject *, PyObject * const*, Py_ssize_t))meth’ 2021-07-13T22:09:25,263 7492 | return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); 2021-07-13T22:09:25,263 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,288 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T22:09:25,292 biom/_filter.c:8057:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,293 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,293 | ^ 2021-07-13T22:09:25,294 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,294 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,294 from biom/_filter.c:4: 2021-07-13T22:09:25,294 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T22:09:25,295 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T22:09:25,295 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,300 biom/_filter.c:8057:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,301 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,301 | ^ 2021-07-13T22:09:25,301 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,301 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,301 from biom/_filter.c:4: 2021-07-13T22:09:25,301 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T22:09:25,302 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T22:09:25,302 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,306 biom/_filter.c:8057:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,306 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,306 | ^ 2021-07-13T22:09:25,307 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,307 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,307 from biom/_filter.c:4: 2021-07-13T22:09:25,307 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T22:09:25,307 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T22:09:25,308 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,313 biom/_filter.c:8057:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,313 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,313 | ^ 2021-07-13T22:09:25,313 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,314 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,314 from biom/_filter.c:4: 2021-07-13T22:09:25,314 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T22:09:25,314 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T22:09:25,314 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,320 biom/_filter.c:8057:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,320 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,320 | ^ 2021-07-13T22:09:25,320 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,321 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,321 from biom/_filter.c:4: 2021-07-13T22:09:25,321 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T22:09:25,321 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T22:09:25,321 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,327 biom/_filter.c:8057:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,327 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,327 | ^ 2021-07-13T22:09:25,327 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,328 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,328 from biom/_filter.c:4: 2021-07-13T22:09:25,328 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T22:09:25,328 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T22:09:25,328 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,334 biom/_filter.c:8073:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,334 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,334 | ^ 2021-07-13T22:09:25,334 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,335 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,335 from biom/_filter.c:4: 2021-07-13T22:09:25,335 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T22:09:25,335 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T22:09:25,335 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,339 biom/_filter.c:8073:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,340 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,340 | ^ 2021-07-13T22:09:25,340 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,340 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,340 from biom/_filter.c:4: 2021-07-13T22:09:25,340 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T22:09:25,340 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T22:09:25,341 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,345 biom/_filter.c:8073:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,345 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,345 | ^ 2021-07-13T22:09:25,345 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,346 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,346 from biom/_filter.c:4: 2021-07-13T22:09:25,346 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T22:09:25,346 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T22:09:25,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,350 biom/_filter.c:8073:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,351 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,351 | ^ 2021-07-13T22:09:25,351 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,351 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,351 from biom/_filter.c:4: 2021-07-13T22:09:25,351 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T22:09:25,352 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T22:09:25,352 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,356 biom/_filter.c:8073:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,356 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,356 | ^ 2021-07-13T22:09:25,356 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,357 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,357 from biom/_filter.c:4: 2021-07-13T22:09:25,357 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T22:09:25,357 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T22:09:25,357 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,361 biom/_filter.c:8073:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T22:09:25,362 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T22:09:25,362 | ^ 2021-07-13T22:09:25,362 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T22:09:25,362 from /usr/include/python3.9/Python.h:97, 2021-07-13T22:09:25,362 from biom/_filter.c:4: 2021-07-13T22:09:25,362 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T22:09:25,363 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T22:09:25,363 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:09:25,390 biom/_filter.c: In function ‘__Pyx__ExceptionSave’: 2021-07-13T22:09:25,398 biom/_filter.c:8393:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T22:09:25,399 8393 | *type = tstate->exc_type; 2021-07-13T22:09:25,399 | ^~~~~~~~ 2021-07-13T22:09:25,399 | curexc_type 2021-07-13T22:09:25,407 biom/_filter.c:8394:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T22:09:25,407 8394 | *value = tstate->exc_value; 2021-07-13T22:09:25,407 | ^~~~~~~~~ 2021-07-13T22:09:25,407 | curexc_value 2021-07-13T22:09:25,415 biom/_filter.c:8395:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T22:09:25,415 8395 | *tb = tstate->exc_traceback; 2021-07-13T22:09:25,416 | ^~~~~~~~~~~~~ 2021-07-13T22:09:25,416 | curexc_traceback 2021-07-13T22:09:25,416 biom/_filter.c: In function ‘__Pyx__ExceptionReset’: 2021-07-13T22:09:25,424 biom/_filter.c:8402:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T22:09:25,424 8402 | tmp_type = tstate->exc_type; 2021-07-13T22:09:25,424 | ^~~~~~~~ 2021-07-13T22:09:25,424 | curexc_type 2021-07-13T22:09:25,432 biom/_filter.c:8403:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T22:09:25,432 8403 | tmp_value = tstate->exc_value; 2021-07-13T22:09:25,433 | ^~~~~~~~~ 2021-07-13T22:09:25,433 | curexc_value 2021-07-13T22:09:25,441 biom/_filter.c:8404:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T22:09:25,441 8404 | tmp_tb = tstate->exc_traceback; 2021-07-13T22:09:25,441 | ^~~~~~~~~~~~~ 2021-07-13T22:09:25,441 | curexc_traceback 2021-07-13T22:09:25,449 biom/_filter.c:8405:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T22:09:25,449 8405 | tstate->exc_type = type; 2021-07-13T22:09:25,449 | ^~~~~~~~ 2021-07-13T22:09:25,450 | curexc_type 2021-07-13T22:09:25,457 biom/_filter.c:8406:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T22:09:25,458 8406 | tstate->exc_value = value; 2021-07-13T22:09:25,458 | ^~~~~~~~~ 2021-07-13T22:09:25,458 | curexc_value 2021-07-13T22:09:25,466 biom/_filter.c:8407:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T22:09:25,466 8407 | tstate->exc_traceback = tb; 2021-07-13T22:09:25,466 | ^~~~~~~~~~~~~ 2021-07-13T22:09:25,466 | curexc_traceback 2021-07-13T22:09:25,473 biom/_filter.c: In function ‘__Pyx__GetException’: 2021-07-13T22:09:25,481 biom/_filter.c:8462:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T22:09:25,481 8462 | tmp_type = tstate->exc_type; 2021-07-13T22:09:25,481 | ^~~~~~~~ 2021-07-13T22:09:25,482 | curexc_type 2021-07-13T22:09:25,489 biom/_filter.c:8463:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T22:09:25,490 8463 | tmp_value = tstate->exc_value; 2021-07-13T22:09:25,490 | ^~~~~~~~~ 2021-07-13T22:09:25,490 | curexc_value 2021-07-13T22:09:25,498 biom/_filter.c:8464:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T22:09:25,498 8464 | tmp_tb = tstate->exc_traceback; 2021-07-13T22:09:25,498 | ^~~~~~~~~~~~~ 2021-07-13T22:09:25,499 | curexc_traceback 2021-07-13T22:09:25,506 biom/_filter.c:8465:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T22:09:25,507 8465 | tstate->exc_type = local_type; 2021-07-13T22:09:25,507 | ^~~~~~~~ 2021-07-13T22:09:25,507 | curexc_type 2021-07-13T22:09:25,515 biom/_filter.c:8466:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T22:09:25,515 8466 | tstate->exc_value = local_value; 2021-07-13T22:09:25,515 | ^~~~~~~~~ 2021-07-13T22:09:25,515 | curexc_value 2021-07-13T22:09:25,523 biom/_filter.c:8467:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T22:09:25,523 8467 | tstate->exc_traceback = local_tb; 2021-07-13T22:09:25,524 | ^~~~~~~~~~~~~ 2021-07-13T22:09:25,524 | curexc_traceback 2021-07-13T22:09:25,714 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-13T22:09:25,868 Building wheel for biom-format (setup.py): finished with status 'error' 2021-07-13T22:09:25,868 ERROR: Failed building wheel for biom-format 2021-07-13T22:09:25,869 Running setup.py clean for biom-format 2021-07-13T22:09:25,870 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-o4vgaq3f/biom-format_8483ed3463fa4f84b50bf365cb1d1577/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-o4vgaq3f/biom-format_8483ed3463fa4f84b50bf365cb1d1577/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-13T22:09:27,625 running clean 2021-07-13T22:09:27,628 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-13T22:09:27,630 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-13T22:09:27,718 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-13T22:09:27,719 'build/scripts-3.9' does not exist -- can't clean it 2021-07-13T22:09:27,719 removing 'build' 2021-07-13T22:09:27,840 Failed to build biom-format 2021-07-13T22:09:27,841 ERROR: Failed to build one or more wheels 2021-07-13T22:09:27,842 Exception information: 2021-07-13T22:09:27,842 Traceback (most recent call last): 2021-07-13T22:09:27,842 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T22:09:27,842 status = self.run(options, args) 2021-07-13T22:09:27,842 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T22:09:27,842 return func(self, options, args) 2021-07-13T22:09:27,842 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-13T22:09:27,842 raise CommandError( 2021-07-13T22:09:27,842 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-13T22:09:27,844 Removed build tracker: '/tmp/pip-req-tracker-6uu3u1lu'