2021-07-13T22:18:34,863 Created temporary directory: /tmp/pip-ephem-wheel-cache-kaksh51m
2021-07-13T22:18:34,866 Created temporary directory: /tmp/pip-req-tracker-349ru04u
2021-07-13T22:18:34,866 Initialized build tracking at /tmp/pip-req-tracker-349ru04u
2021-07-13T22:18:34,866 Created build tracker: /tmp/pip-req-tracker-349ru04u
2021-07-13T22:18:34,867 Entered build tracker: /tmp/pip-req-tracker-349ru04u
2021-07-13T22:18:34,867 Created temporary directory: /tmp/pip-wheel-ia62vdie
2021-07-13T22:18:34,902 1 location(s) to search for versions of centrosome:
2021-07-13T22:18:34,902 * https://pypi.org/simple/centrosome/
2021-07-13T22:18:34,902 Fetching project page and analyzing links: https://pypi.org/simple/centrosome/
2021-07-13T22:18:34,903 Getting page https://pypi.org/simple/centrosome/
2021-07-13T22:18:34,904 Found index url https://pypi.org/simple
2021-07-13T22:18:35,131   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ef/32/0ebe5dd08e33dcddbf5acc9458f73fbfacbf0b1a86b1a02bc5600ea1ecb3/centrosome-1.0.1-cp27-none-macosx_10_10_x86_64.whl#sha256=82e6f56ba6a494bf9e9094a6a1e6a4a399b0ad83194d6820903899dc1f7bf223 (from https://pypi.org/simple/centrosome/)
2021-07-13T22:18:35,132   Found link https://files.pythonhosted.org/packages/d5/5b/39c53336367d2e76ef3e3698d1864f29d9e3f71e11fa6e44edb34f80ee7e/centrosome-1.0.1.tar.gz#sha256=1e6ad1eb53e5ffc911db3d89d1fa69e6a9b94602c378e0be56836a9f3c0d1f98 (from https://pypi.org/simple/centrosome/), version: 1.0.1
2021-07-13T22:18:35,132   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fb/5c/9d92237bfe242d4407c5e6129e2e7c3467e3dd90e81f1a4e53708638b42d/centrosome-1.0.2-cp27-none-macosx_10_10_intel.whl#sha256=420875a01d797fe1497368c5fca837dbbe38b31c12a9288ea548c2d8596cd942 (from https://pypi.org/simple/centrosome/)
2021-07-13T22:18:35,133   Found link https://files.pythonhosted.org/packages/53/a1/c0ddccf5afab91da1d244230d97e033e8ba46a6f8ffdabb5cf787cbd7c46/centrosome-1.0.2.tar.gz#sha256=f2ca282de415e3c5051456b83cfe2defb9cd04299cebe3af86820ffea46567ac (from https://pypi.org/simple/centrosome/), version: 1.0.2
2021-07-13T22:18:35,133   Found link https://files.pythonhosted.org/packages/1e/35/029b29583069050f7102777139c26f1c956684ee3cf5ff5be677ca567e4b/centrosome-1.0.3.tar.gz#sha256=852910ae30baae1e590f5db11385801156b3cbb9dfd5b413ffca73cc986a878d (from https://pypi.org/simple/centrosome/), version: 1.0.3
2021-07-13T22:18:35,133   Found link https://files.pythonhosted.org/packages/d5/06/7b563c0df0b04797b6003313ee76800ee03188d9caa40e1d2c22336c90f1/centrosome-1.0.4.tar.gz#sha256=e7a952e427f8cccb16e5ba7fe71f6f28dc242ca0b96b5bd83399928cb55530e3 (from https://pypi.org/simple/centrosome/), version: 1.0.4
2021-07-13T22:18:35,133   Found link https://files.pythonhosted.org/packages/fc/75/8bd2734c337bccbc5bbc863cf8ec262abedd3bb1173136cb168ae07312ca/centrosome-1.0.5.tar.gz#sha256=45aa7c64117058a81308b08a9d35b54e64ed4a0ac5325c9e880fe85fff5cd535 (from https://pypi.org/simple/centrosome/), version: 1.0.5
2021-07-13T22:18:35,134   Found link https://files.pythonhosted.org/packages/2e/0d/b02aec55505c9c6bf086ae925c84cac69a6d8e5d4ecc43439fcab1a237db/centrosome-1.0.6.tar.gz#sha256=474b9d992458186f1da038fe43da9997a63ebb11cc5c9383cdeae41f528d6552 (from https://pypi.org/simple/centrosome/), version: 1.0.6
2021-07-13T22:18:35,134   Found link https://files.pythonhosted.org/packages/15/72/ad891b9111e74d85dc9245c34e01817ded2dfc5c3be25dd9037b100ff1ae/centrosome-1.0.7.tar.gz#sha256=659d8ab5fb207d870832df9d5a2c844be7a9d1259fabad0a2b2b14250b505de2 (from https://pypi.org/simple/centrosome/), version: 1.0.7
2021-07-13T22:18:35,134   Found link https://files.pythonhosted.org/packages/bf/43/0f7a68d756c9f5667f61d12d0b8a6016f8b0b857204b8ff83ebef973ebc8/centrosome-1.0.8.tar.gz#sha256=47dc3abcb9f4b184ad9f875bf854d3fe221628de3e5999410dba66d3873f11f6 (from https://pypi.org/simple/centrosome/), version: 1.0.8
2021-07-13T22:18:35,135   Found link https://files.pythonhosted.org/packages/eb/8a/318cf9ffff05c494d490dd04db77a7646a361b69ec039f23b9251c10b725/centrosome-1.0.9.tar.gz#sha256=114fa352c11d601c6d8c422f001c95e91cdff2335a4254c79ff7c8d0bd66afd7 (from https://pypi.org/simple/centrosome/), version: 1.0.9
2021-07-13T22:18:35,135   Found link https://files.pythonhosted.org/packages/7a/d5/cd779a0a3f70c7f343a499d56a93cd4bed8e3cac857279d48db426f3adb1/centrosome-1.1.2.tar.gz#sha256=021a8c68ff5e03ce47d33e8e9aa61e342834c02225688d63fda4b8415acb4a32 (from https://pypi.org/simple/centrosome/), version: 1.1.2
2021-07-13T22:18:35,135   Found link https://files.pythonhosted.org/packages/7b/1e/e7471f3ab26ee17ada5fb13c51b3cd368f2a716bec576568884fbea7ac42/centrosome-1.1.4.tar.gz#sha256=04d56a25f2c5420cc8b5cebcc60f687f266742083211376e2d70b69b5fa0afb0 (from https://pypi.org/simple/centrosome/), version: 1.1.4
2021-07-13T22:18:35,136   Found link https://files.pythonhosted.org/packages/a3/a9/2ff82b223acda9404ef1d0c2aace37fde9c7266e80e1e2e959da60da8012/centrosome-1.1.5.tar.gz#sha256=b1dfbe45c3755837a350a855f47123ed306fdd306726fd0c69bb0900b38a5b4c (from https://pypi.org/simple/centrosome/), version: 1.1.5
2021-07-13T22:18:35,136   Found link https://files.pythonhosted.org/packages/8e/4d/246b4e375be61fb6a51a4511d749cb5aa845dc5e61d799eece6a1a87f7d1/centrosome-1.1.6.tar.gz#sha256=b253df00a19f51887de660033a28cac573930cf24b59a43599d9f4d60e12e9e8 (from https://pypi.org/simple/centrosome/), version: 1.1.6
2021-07-13T22:18:35,136   Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/87/07/1368796bbf9e61e307e73c8370a6eab1c76b23d2c0e66594a3b6b11575d5/centrosome-1.1.7-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=18df933288b1728b5e26a4f481689d8dbc7b043c70f56853f1f6c9de53366fca (from https://pypi.org/simple/centrosome/)
2021-07-13T22:18:35,137   Found link https://files.pythonhosted.org/packages/ac/01/7f46b624571a67082e8db4c2441609eefe05c655b3baca71316025122d95/centrosome-1.1.7.tar.gz#sha256=d82d14e0488ef93ef7872e73306d7481d605ca7eb46ce529d2d08d45783fce17 (from https://pypi.org/simple/centrosome/), version: 1.1.7
2021-07-13T22:18:35,137   Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ea/d8/7cda6ed98b8a45f79cba773ec6f9fd0034dc30596b518f76e34f38b05788/centrosome-1.2.0-cp38-cp38-macosx_10_15_x86_64.whl#sha256=06824e698104afabfd9f41e7ac479f26543fe55f1859d2540779621edf050d16 (from https://pypi.org/simple/centrosome/)
2021-07-13T22:18:35,137   Found link https://files.pythonhosted.org/packages/61/c7/e1a31b6a092a5b91952fe96801b2d3167fcb3bad8386c023dd83de4c4ab8/centrosome-1.2.0.tar.gz#sha256=c0b834e2e749c586077af95ab307c15d9bf498c4667f6031b0915efb94674bff (from https://pypi.org/simple/centrosome/), version: 1.2.0
2021-07-13T22:18:35,138 Skipping link: not a file: https://pypi.org/simple/centrosome/
2021-07-13T22:18:35,140 Given no hashes to check 1 links for project 'centrosome': discarding no candidates
2021-07-13T22:18:35,160 Collecting centrosome==1.1.2
2021-07-13T22:18:35,162   Created temporary directory: /tmp/pip-unpack-12ry2go7
2021-07-13T22:18:35,733   Downloading centrosome-1.1.2.tar.gz (634 kB)
2021-07-13T22:18:36,158   Added centrosome==1.1.2 from https://files.pythonhosted.org/packages/7a/d5/cd779a0a3f70c7f343a499d56a93cd4bed8e3cac857279d48db426f3adb1/centrosome-1.1.2.tar.gz#sha256=021a8c68ff5e03ce47d33e8e9aa61e342834c02225688d63fda4b8415acb4a32 to build tracker '/tmp/pip-req-tracker-349ru04u'
2021-07-13T22:18:36,159     Running setup.py (path:/tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000/setup.py) egg_info for package centrosome
2021-07-13T22:18:36,160     Created temporary directory: /tmp/pip-pip-egg-info-drob8jdb
2021-07-13T22:18:36,160     Running command python setup.py egg_info
2021-07-13T22:18:38,402     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000/centrosome/_fastemd.pyx
2021-07-13T22:18:38,403       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:41,230     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000/centrosome/_convex_hull.pyx
2021-07-13T22:18:41,231       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:42,905     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000/centrosome/_cpmorphology2.pyx
2021-07-13T22:18:42,905       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:45,437     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000/centrosome/_filter.pyx
2021-07-13T22:18:45,437       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:48,037     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000/centrosome/_lapjv.pyx
2021-07-13T22:18:48,038       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:49,467     warning: centrosome/_lapjv.pyx:281:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-13T22:18:49,468     warning: centrosome/_lapjv.pyx:281:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-13T22:18:49,924     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000/centrosome/_propagate.pyx
2021-07-13T22:18:49,924       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:51,870     Compiling centrosome/_propagate.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-13T22:18:51,870     Compiling centrosome/_filter.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-13T22:18:51,870     Compiling centrosome/_fastemd.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-13T22:18:51,871     Compiling centrosome/_convex_hull.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-13T22:18:51,871     Compiling centrosome/_cpmorphology2.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-13T22:18:51,871     Compiling centrosome/_lapjv.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-13T22:18:51,871     [1/6] Cythonizing centrosome/_fastemd.pyx
2021-07-13T22:18:51,871     [2/6] Cythonizing centrosome/_convex_hull.pyx
2021-07-13T22:18:51,871     [3/6] Cythonizing centrosome/_cpmorphology2.pyx
2021-07-13T22:18:51,871     [4/6] Cythonizing centrosome/_filter.pyx
2021-07-13T22:18:51,872     [5/6] Cythonizing centrosome/_lapjv.pyx
2021-07-13T22:18:51,872     [6/6] Cythonizing centrosome/_propagate.pyx
2021-07-13T22:18:52,239     running egg_info
2021-07-13T22:18:52,242     creating /tmp/pip-pip-egg-info-drob8jdb/centrosome.egg-info
2021-07-13T22:18:52,243     writing /tmp/pip-pip-egg-info-drob8jdb/centrosome.egg-info/PKG-INFO
2021-07-13T22:18:52,245     writing dependency_links to /tmp/pip-pip-egg-info-drob8jdb/centrosome.egg-info/dependency_links.txt
2021-07-13T22:18:52,247     writing requirements to /tmp/pip-pip-egg-info-drob8jdb/centrosome.egg-info/requires.txt
2021-07-13T22:18:52,248     writing top-level names to /tmp/pip-pip-egg-info-drob8jdb/centrosome.egg-info/top_level.txt
2021-07-13T22:18:52,250     writing manifest file '/tmp/pip-pip-egg-info-drob8jdb/centrosome.egg-info/SOURCES.txt'
2021-07-13T22:18:52,408     reading manifest file '/tmp/pip-pip-egg-info-drob8jdb/centrosome.egg-info/SOURCES.txt'
2021-07-13T22:18:52,409     reading manifest template 'MANIFEST.in'
2021-07-13T22:18:52,425     adding license file 'LICENSE'
2021-07-13T22:18:52,428     writing manifest file '/tmp/pip-pip-egg-info-drob8jdb/centrosome.egg-info/SOURCES.txt'
2021-07-13T22:18:52,616   Source in /tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000 has version 1.1.2, which satisfies requirement centrosome==1.1.2 from https://files.pythonhosted.org/packages/7a/d5/cd779a0a3f70c7f343a499d56a93cd4bed8e3cac857279d48db426f3adb1/centrosome-1.1.2.tar.gz#sha256=021a8c68ff5e03ce47d33e8e9aa61e342834c02225688d63fda4b8415acb4a32
2021-07-13T22:18:52,617   Removed centrosome==1.1.2 from https://files.pythonhosted.org/packages/7a/d5/cd779a0a3f70c7f343a499d56a93cd4bed8e3cac857279d48db426f3adb1/centrosome-1.1.2.tar.gz#sha256=021a8c68ff5e03ce47d33e8e9aa61e342834c02225688d63fda4b8415acb4a32 from build tracker '/tmp/pip-req-tracker-349ru04u'
2021-07-13T22:18:52,621 Created temporary directory: /tmp/pip-unpack-o4df3_2v
2021-07-13T22:18:52,622 Building wheels for collected packages: centrosome
2021-07-13T22:18:52,626   Created temporary directory: /tmp/pip-wheel-2hmglqlh
2021-07-13T22:18:52,626   Building wheel for centrosome (setup.py): started
2021-07-13T22:18:52,627   Destination directory: /tmp/pip-wheel-2hmglqlh
2021-07-13T22:18:52,627   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ia62vdie/centrosome_62487afc46f241fb9204a1971f628000/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2hmglqlh
2021-07-13T22:18:54,678   running bdist_wheel
2021-07-13T22:18:54,683   running build
2021-07-13T22:18:54,683   running build_py
2021-07-13T22:18:54,824   creating build
2021-07-13T22:18:54,824   creating build/lib.linux-armv7l-3.9
2021-07-13T22:18:54,825   creating build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,826   copying centrosome/princomp.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,828   copying centrosome/filter.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,832   copying centrosome/zernike.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,834   copying centrosome/threshold.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,837   copying centrosome/bg_compensate.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,840   copying centrosome/kirsch.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,842   copying centrosome/smooth.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,844   copying centrosome/cpmorphology.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,851   copying centrosome/lapjv.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,854   copying centrosome/watershed.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,856   copying centrosome/index.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,858   copying centrosome/neighmovetrack.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,861   copying centrosome/radial_power_spectrum.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,863   copying centrosome/fastemd.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,865   copying centrosome/rankorder.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,867   copying centrosome/_version.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,869   copying centrosome/outline.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,871   copying centrosome/otsu.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,873   copying centrosome/propagate.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,875   copying centrosome/haralick.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,877   copying centrosome/mode.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,879   copying centrosome/__init__.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:54,882   running build_ext
2021-07-13T22:18:55,161   building 'centrosome._propagate' extension
2021-07-13T22:18:55,162   creating build/temp.linux-armv7l-3.9
2021-07-13T22:18:55,162   creating build/temp.linux-armv7l-3.9/centrosome
2021-07-13T22:18:55,163   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_propagate.c -o build/temp.linux-armv7l-3.9/centrosome/_propagate.o
2021-07-13T22:18:55,582   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:18:55,582                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:18:55,582                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:18:55,582                    from centrosome/_propagate.c:623:
2021-07-13T22:18:55,583   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:18:55,583      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:18:55,583         |  ^~~~~~~
2021-07-13T22:18:55,676   centrosome/_propagate.c: In function ‘__pyx_f_10centrosome_4heap_heap_from_numpy2’:
2021-07-13T22:18:55,678   centrosome/_propagate.c:4797:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-13T22:18:55,678    4797 |   if (((__pyx_t_4 > __pyx_t_3) != 0)) {
2021-07-13T22:18:55,678         |                   ^
2021-07-13T22:18:55,709   centrosome/_propagate.c: In function ‘__pyx_pymod_exec__propagate’:
2021-07-13T22:18:55,712   centrosome/_propagate.c:6301:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion]
2021-07-13T22:18:55,712    6301 |   import_array();
2021-07-13T22:18:55,713         |   ^~~~~~~~~~~~
2021-07-13T22:19:00,348   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_propagate.o -o build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:00,482   building 'centrosome._filter' extension
2021-07-13T22:19:00,483   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_filter.cpp -o build/temp.linux-armv7l-3.9/centrosome/_filter.o
2021-07-13T22:19:00,770   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:00,771                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:00,771                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:00,771                    from centrosome/_filter.cpp:640:
2021-07-13T22:19:00,771   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:00,771      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:00,771         |  ^~~~~~~
2021-07-13T22:19:02,086   centrosome/_filter.cpp: In function ‘int __pyx_pymod_exec__filter(PyObject*)’:
2021-07-13T22:19:02,086   centrosome/_filter.cpp:8478:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-13T22:19:02,087    8478 |   import_array();
2021-07-13T22:19:02,087         |   ^~~~~~~~~~~~
2021-07-13T22:19:08,062   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_filter.o -o build/lib.linux-armv7l-3.9/centrosome/_filter.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:08,251   building 'centrosome._fastemd' extension
2021-07-13T22:19:08,251   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_fastemd.cpp -o build/temp.linux-armv7l-3.9/centrosome/_fastemd.o
2021-07-13T22:19:08,531   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:08,531                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:08,531                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:08,532                    from centrosome/_fastemd.cpp:640:
2021-07-13T22:19:08,532   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:08,532      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:08,532         |  ^~~~~~~
2021-07-13T22:19:10,082   centrosome/_fastemd.cpp: In function ‘PyObject* __pyx_pf_10centrosome_8_fastemd_emd_hat_int32(PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*)’:
2021-07-13T22:19:10,082   centrosome/_fastemd.cpp:2765:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector<std::vector<long int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,083    2765 |   __pyx_t_10 = ((__pyx_v_plen < __pyx_v_vf.size()) != 0);
2021-07-13T22:19:10,083         |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2021-07-13T22:19:10,083   centrosome/_fastemd.cpp:2798:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,083    2798 |   __pyx_t_10 = ((__pyx_v_qlen < (__pyx_v_vf[0]).size()) != 0);
2021-07-13T22:19:10,083         |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T22:19:10,318   In file included from centrosome/include/emd_hat.hpp:59,
2021-07-13T22:19:10,318                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-13T22:19:10,318                    from centrosome/_fastemd.cpp:655:
2021-07-13T22:19:10,318   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’:
2021-07-13T22:19:10,318   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,319   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:10,319   centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,319      41 |     {for (NODE_T i=0; i<P.size(); ++i) {
2021-07-13T22:19:10,319         |                       ~^~~~~~~~~
2021-07-13T22:19:10,320   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’:
2021-07-13T22:19:10,320   centrosome/include/fastemd_hat.hpp:39:65:   required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,320   centrosome/_fastemd.cpp:2597:349:   required from here
2021-07-13T22:19:10,320   centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,322   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’:
2021-07-13T22:19:10,322   centrosome/include/fastemd_hat.hpp:51:63:   required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,322   centrosome/_fastemd.cpp:2649:346:   required from here
2021-07-13T22:19:10,323   centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,361   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘void fillFWithZeros(std::vector<std::vector<NUM_T> >&) [with NUM_T = long int]’:
2021-07-13T22:19:10,361   centrosome/include/emd_hat_impl.hpp:33:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:10,361   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,362   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:10,362   centrosome/include/emd_hat_impl.hpp:17:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::vector<long int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,362      17 |     for (NODE_T i= 0; i<F.size(); ++i) {
2021-07-13T22:19:10,362         |                       ~^~~~~~~~~
2021-07-13T22:19:10,362   centrosome/include/emd_hat_impl.hpp:18:28: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,362      18 |         for (NODE_T j= 0; j<F[i].size(); ++j) {
2021-07-13T22:19:10,362         |                           ~^~~~~~~~~~~~
2021-07-13T22:19:10,431   In file included from centrosome/include/emd_hat.hpp:59,
2021-07-13T22:19:10,431                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-13T22:19:10,432                    from centrosome/_fastemd.cpp:655:
2021-07-13T22:19:10,432   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’:
2021-07-13T22:19:10,432   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:10,432   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:10,432   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,432   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:10,432   centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,433     255 |     {for (NODE_T i=0; i<b.size(); ++i) {
2021-07-13T22:19:10,433         |                       ~^~~~~~~~~
2021-07-13T22:19:10,433   centrosome/include/emd_hat_impl.hpp:263:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > >, std::allocator<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,433     263 |     {for (NODE_T i=0; i<c.size(); ++i) {
2021-07-13T22:19:10,433         |                       ~^~~~~~~~~
2021-07-13T22:19:10,468   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’:
2021-07-13T22:19:10,469   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:10,469   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’
2021-07-13T22:19:10,469   centrosome/include/fastemd_hat.hpp:39:65:   required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,469   centrosome/_fastemd.cpp:2597:349:   required from here
2021-07-13T22:19:10,469   centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,469     255 |     {for (NODE_T i=0; i<b.size(); ++i) {
2021-07-13T22:19:10,470         |                       ~^~~~~~~~~
2021-07-13T22:19:10,470   centrosome/include/emd_hat_impl.hpp:263:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > >, std::allocator<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,470     263 |     {for (NODE_T i=0; i<c.size(); ++i) {
2021-07-13T22:19:10,470         |                       ~^~~~~~~~~
2021-07-13T22:19:10,471   centrosome/include/emd_hat_impl.hpp:296:51: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > >, std::allocator<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,471     296 |         for (NODE_T new_name_from=0; new_name_from<flows.size(); ++new_name_from) {
2021-07-13T22:19:10,471         |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~
2021-07-13T22:19:10,479   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’:
2021-07-13T22:19:10,480   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:10,480   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’
2021-07-13T22:19:10,480   centrosome/include/fastemd_hat.hpp:51:63:   required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,480   centrosome/_fastemd.cpp:2649:346:   required from here
2021-07-13T22:19:10,480   centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,481     255 |     {for (NODE_T i=0; i<b.size(); ++i) {
2021-07-13T22:19:10,481         |                       ~^~~~~~~~~
2021-07-13T22:19:10,481   centrosome/include/emd_hat_impl.hpp:263:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > >, std::allocator<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,481     263 |     {for (NODE_T i=0; i<c.size(); ++i) {
2021-07-13T22:19:10,481         |                       ~^~~~~~~~~
2021-07-13T22:19:10,482   centrosome/include/emd_hat_impl.hpp:296:51: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > >, std::allocator<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,482     296 |         for (NODE_T new_name_from=0; new_name_from<flows.size(); ++new_name_from) {
2021-07-13T22:19:10,482         |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~
2021-07-13T22:19:10,675   In file included from centrosome/include/emd_hat_impl.hpp:8,
2021-07-13T22:19:10,676                    from centrosome/include/emd_hat.hpp:59,
2021-07-13T22:19:10,676                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-13T22:19:10,676                    from centrosome/_fastemd.cpp:655:
2021-07-13T22:19:10,676   centrosome/include/min_cost_flow.hpp: In instantiation of ‘void min_cost_flow<NUM_T>::compute_shortest_path(std::vector<NUM_T>&, std::vector<int>&, NODE_T, std::vector<std::__cxx11::list<edge1<NUM_T> > >&, std::vector<std::__cxx11::list<edge2<NUM_T> > >&, const std::vector<NUM_T>&, NODE_T&) [with NUM_T = long int; NODE_T = int]’:
2021-07-13T22:19:10,676   centrosome/include/min_cost_flow.hpp:155:17:   required from ‘NUM_T min_cost_flow<NUM_T>::operator()(std::vector<NUM_T>&, const std::vector<std::__cxx11::list<edge<NUM_T> > >&, std::vector<std::__cxx11::list<edge0<NUM_T> > >&) [with NUM_T = long int]’
2021-07-13T22:19:10,676   centrosome/include/emd_hat_impl.hpp:291:24:   required from ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:10,676   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:10,677   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:10,677   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,677   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:10,677   centrosome/include/min_cost_flow.hpp:321:37: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,677     321 |                 if ( (_nodes_to_Q[v]<Q.size()) && (alt<Q[_nodes_to_Q[v]]._dist) ) {
2021-07-13T22:19:10,677         |                      ~~~~~~~~~~~~~~~^~~~~~~~~~
2021-07-13T22:19:10,678   centrosome/include/min_cost_flow.hpp:332:41: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,678     332 |                     if ( (_nodes_to_Q[v]<Q.size()) && (alt<Q[_nodes_to_Q[v]]._dist) )  {
2021-07-13T22:19:10,678         |                          ~~~~~~~~~~~~~~~^~~~~~~~~~
2021-07-13T22:19:10,683   In file included from centrosome/_fastemd.cpp:654:
2021-07-13T22:19:10,684   centrosome/include/flow_utils.hpp: In instantiation of ‘void return_flow_from_to_transhipment_vertex(const std::vector<std::vector<NUM_T> >&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, std::vector<NUM_T>&, std::vector<NUM_T>&) [with NUM_T = long int]’:
2021-07-13T22:19:10,684   centrosome/include/flow_utils.hpp:46:44:   required from ‘void transform_flow_to_regular(std::vector<std::vector<NUM_T> >&, const std::vector<NUM_T>&, const std::vector<NUM_T>&) [with NUM_T = long int]’
2021-07-13T22:19:10,684   centrosome/include/emd_hat_impl.hpp:322:70:   required from ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:10,684   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:10,684   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:10,685   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,685   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:10,685   centrosome/include/flow_utils.hpp:25:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,685      25 |     for (NODE_T i= 0; i<P.size(); ++i) {
2021-07-13T22:19:10,685         |                       ~^~~~~~~~~
2021-07-13T22:19:10,685   centrosome/include/flow_utils.hpp:26:28: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,686      26 |         for (NODE_T j= 0; j<P.size(); ++j) {
2021-07-13T22:19:10,686         |                           ~^~~~~~~~~
2021-07-13T22:19:10,803   In file included from centrosome/include/emd_hat_impl.hpp:8,
2021-07-13T22:19:10,803                    from centrosome/include/emd_hat.hpp:59,
2021-07-13T22:19:10,803                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-13T22:19:10,803                    from centrosome/_fastemd.cpp:655:
2021-07-13T22:19:10,803   centrosome/include/min_cost_flow.hpp: In instantiation of ‘void min_cost_flow<NUM_T>::heapify(std::vector<edge3<NUM_T> >&, std::vector<int>&, NODE_T) [with NUM_T = long int; NODE_T = int]’:
2021-07-13T22:19:10,803   centrosome/include/min_cost_flow.hpp:392:9:   required from ‘void min_cost_flow<NUM_T>::heap_remove_first(std::vector<edge3<NUM_T> >&, std::vector<int>&) [with NUM_T = long int]’
2021-07-13T22:19:10,804   centrosome/include/min_cost_flow.hpp:313:13:   required from ‘void min_cost_flow<NUM_T>::compute_shortest_path(std::vector<NUM_T>&, std::vector<int>&, NODE_T, std::vector<std::__cxx11::list<edge1<NUM_T> > >&, std::vector<std::__cxx11::list<edge2<NUM_T> > >&, const std::vector<NUM_T>&, NODE_T&) [with NUM_T = long int; NODE_T = int]’
2021-07-13T22:19:10,804   centrosome/include/min_cost_flow.hpp:155:17:   required from ‘NUM_T min_cost_flow<NUM_T>::operator()(std::vector<NUM_T>&, const std::vector<std::__cxx11::list<edge<NUM_T> > >&, std::vector<std::__cxx11::list<edge0<NUM_T> > >&) [with NUM_T = long int]’
2021-07-13T22:19:10,804   centrosome/include/emd_hat_impl.hpp:291:24:   required from ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:10,804   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:10,804   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:10,804   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:10,805   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:10,805   centrosome/include/min_cost_flow.hpp:405:20: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,805     405 |             if ( (l<Q.size()) && (Q[l]._dist<Q[i]._dist) ) {
2021-07-13T22:19:10,805         |                  ~~^~~~~~~~~~
2021-07-13T22:19:10,805   centrosome/include/min_cost_flow.hpp:410:20: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:10,806     410 |             if ( (r<Q.size())&& (Q[r]._dist<Q[smallest]._dist) ) {
2021-07-13T22:19:10,806         |                  ~~^~~~~~~~~~
2021-07-13T22:19:20,816   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_fastemd.o -o build/lib.linux-armv7l-3.9/centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:21,161   building 'centrosome._convex_hull' extension
2021-07-13T22:19:21,161   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_convex_hull.cpp -o build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o
2021-07-13T22:19:21,444   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:21,444                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:21,444                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:21,444                    from centrosome/_convex_hull.cpp:640:
2021-07-13T22:19:21,444   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:21,445      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:21,445         |  ^~~~~~~
2021-07-13T22:19:28,954   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o -o build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:29,132   building 'centrosome._cpmorphology2' extension
2021-07-13T22:19:29,132   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_cpmorphology2.cpp -o build/temp.linux-armv7l-3.9/centrosome/_cpmorphology2.o
2021-07-13T22:19:29,414   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:29,414                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:29,414                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:29,415                    from centrosome/_cpmorphology2.cpp:640:
2021-07-13T22:19:29,415   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:29,415      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:29,415         |  ^~~~~~~
2021-07-13T22:19:30,675   centrosome/_cpmorphology2.cpp: In function ‘PyObject* __pyx_pf_10centrosome_14_cpmorphology2_8index_lookup(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyObject*, PyObject*)’:
2021-07-13T22:19:30,675   centrosome/_cpmorphology2.cpp:6191:29: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_5numpy_uint32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2021-07-13T22:19:30,676    6191 |     __pyx_t_6 = ((__pyx_t_9 == __pyx_v_hit_count) != 0);
2021-07-13T22:19:30,676         |                   ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2021-07-13T22:19:30,831   centrosome/_cpmorphology2.cpp: In function ‘int __pyx_pymod_exec__cpmorphology2(PyObject*)’:
2021-07-13T22:19:30,831   centrosome/_cpmorphology2.cpp:10432:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-13T22:19:30,831   10432 |   import_array();
2021-07-13T22:19:30,831         |   ^~~~~~~~~~~~
2021-07-13T22:19:40,672   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_cpmorphology2.o -o build/lib.linux-armv7l-3.9/centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:40,860   building 'centrosome._lapjv' extension
2021-07-13T22:19:40,860   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_lapjv.cpp -o build/temp.linux-armv7l-3.9/centrosome/_lapjv.o
2021-07-13T22:19:41,139   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:41,139                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:41,139                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:41,140                    from centrosome/_lapjv.cpp:640:
2021-07-13T22:19:41,140   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:41,140      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:41,140         |  ^~~~~~~
2021-07-13T22:19:42,466   centrosome/_lapjv.cpp: In function ‘int __pyx_pymod_exec__lapjv(PyObject*)’:
2021-07-13T22:19:42,466   centrosome/_lapjv.cpp:7984:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-13T22:19:42,466    7984 |   import_array();
2021-07-13T22:19:42,467         |   ^~~~~~~~~~~~
2021-07-13T22:19:45,443   centrosome/_lapjv.cpp: In function ‘PyObject* __pyx_pf_10centrosome_6_lapjv_2augmenting_row_reduction(PyObject*, int, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*)’:
2021-07-13T22:19:45,443   centrosome/_lapjv.cpp:3484:44: warning: ‘__pyx_v_j2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-13T22:19:45,443    3484 |             __pyx_v_i1 = (__pyx_v_p_y_base[__pyx_v_j1]);
2021-07-13T22:19:45,444         |                                            ^~~~~~~~~~
2021-07-13T22:19:45,444   centrosome/_lapjv.cpp:3427:42: warning: ‘__pyx_v_j1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-13T22:19:45,444    3427 |           __pyx_v_i1 = (__pyx_v_p_y_base[__pyx_v_j1]);
2021-07-13T22:19:45,444         |                                          ^~~~~~~~~~
2021-07-13T22:19:46,983   centrosome/_lapjv.cpp: In function ‘PyObject* __pyx_pf_10centrosome_6_lapjv_4augment(PyObject*, int, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*)’:
2021-07-13T22:19:46,983   centrosome/_lapjv.cpp:5713:24: warning: ‘__pyx_v_umin’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-13T22:19:46,984    5713 |             __pyx_v_u1 = (((__pyx_v_p_c[__pyx_v_jidx]) - (__pyx_v_p_v_base[__pyx_v_j1])) - __pyx_v_umin);
2021-07-13T22:19:46,984         |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T22:19:50,359   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_lapjv.o -o build/lib.linux-armv7l-3.9/centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:50,553   installing to build/bdist.linux-armv7l/wheel
2021-07-13T22:19:50,553   running install
2021-07-13T22:19:50,554   running install_lib
2021-07-13T22:19:50,559   creating build/bdist.linux-armv7l
2021-07-13T22:19:50,559   creating build/bdist.linux-armv7l/wheel
2021-07-13T22:19:50,562   creating build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,563   copying build/lib.linux-armv7l-3.9/centrosome/princomp.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,565   copying build/lib.linux-armv7l-3.9/centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,597   copying build/lib.linux-armv7l-3.9/centrosome/filter.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,601   copying build/lib.linux-armv7l-3.9/centrosome/zernike.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,603   copying build/lib.linux-armv7l-3.9/centrosome/threshold.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,606   copying build/lib.linux-armv7l-3.9/centrosome/bg_compensate.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,608   copying build/lib.linux-armv7l-3.9/centrosome/kirsch.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,610   copying build/lib.linux-armv7l-3.9/centrosome/smooth.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,612   copying build/lib.linux-armv7l-3.9/centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,628   copying build/lib.linux-armv7l-3.9/centrosome/cpmorphology.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,636   copying build/lib.linux-armv7l-3.9/centrosome/lapjv.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,638   copying build/lib.linux-armv7l-3.9/centrosome/watershed.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,640   copying build/lib.linux-armv7l-3.9/centrosome/index.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,642   copying build/lib.linux-armv7l-3.9/centrosome/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,660   copying build/lib.linux-armv7l-3.9/centrosome/neighmovetrack.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,663   copying build/lib.linux-armv7l-3.9/centrosome/radial_power_spectrum.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,665   copying build/lib.linux-armv7l-3.9/centrosome/fastemd.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,667   copying build/lib.linux-armv7l-3.9/centrosome/rankorder.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,669   copying build/lib.linux-armv7l-3.9/centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,683   copying build/lib.linux-armv7l-3.9/centrosome/_version.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,685   copying build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,697   copying build/lib.linux-armv7l-3.9/centrosome/outline.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,699   copying build/lib.linux-armv7l-3.9/centrosome/otsu.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,702   copying build/lib.linux-armv7l-3.9/centrosome/propagate.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,705   copying build/lib.linux-armv7l-3.9/centrosome/haralick.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,707   copying build/lib.linux-armv7l-3.9/centrosome/mode.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,710   copying build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,721   copying build/lib.linux-armv7l-3.9/centrosome/__init__.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:50,723   running install_egg_info
2021-07-13T22:19:50,747   running egg_info
2021-07-13T22:19:50,749   writing centrosome.egg-info/PKG-INFO
2021-07-13T22:19:50,751   writing dependency_links to centrosome.egg-info/dependency_links.txt
2021-07-13T22:19:50,753   writing requirements to centrosome.egg-info/requires.txt
2021-07-13T22:19:50,755   writing top-level names to centrosome.egg-info/top_level.txt
2021-07-13T22:19:50,766   reading manifest file 'centrosome.egg-info/SOURCES.txt'
2021-07-13T22:19:50,775   reading manifest template 'MANIFEST.in'
2021-07-13T22:19:50,802   adding license file 'LICENSE'
2021-07-13T22:19:50,807   writing manifest file 'centrosome.egg-info/SOURCES.txt'
2021-07-13T22:19:50,809   Copying centrosome.egg-info to build/bdist.linux-armv7l/wheel/centrosome-1.1.2-py3.9.egg-info
2021-07-13T22:19:50,820   running install_scripts
2021-07-13T22:19:50,865   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-13T22:19:50,869   creating build/bdist.linux-armv7l/wheel/centrosome-1.1.2.dist-info/WHEEL
2021-07-13T22:19:50,873   creating '/tmp/pip-wheel-2hmglqlh/centrosome-1.1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T22:19:50,875   adding 'centrosome/__init__.py'
2021-07-13T22:19:50,956   adding 'centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:51,086   adding 'centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:51,300   adding 'centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:51,396   adding 'centrosome/_filter.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:51,493   adding 'centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:51,558   adding 'centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:51,562   adding 'centrosome/_version.py'
2021-07-13T22:19:51,565   adding 'centrosome/bg_compensate.py'
2021-07-13T22:19:51,589   adding 'centrosome/cpmorphology.py'
2021-07-13T22:19:51,592   adding 'centrosome/fastemd.py'
2021-07-13T22:19:51,601   adding 'centrosome/filter.py'
2021-07-13T22:19:51,604   adding 'centrosome/haralick.py'
2021-07-13T22:19:51,606   adding 'centrosome/index.py'
2021-07-13T22:19:51,607   adding 'centrosome/kirsch.py'
2021-07-13T22:19:51,610   adding 'centrosome/lapjv.py'
2021-07-13T22:19:51,611   adding 'centrosome/mode.py'
2021-07-13T22:19:51,613   adding 'centrosome/neighmovetrack.py'
2021-07-13T22:19:51,616   adding 'centrosome/otsu.py'
2021-07-13T22:19:51,617   adding 'centrosome/outline.py'
2021-07-13T22:19:51,619   adding 'centrosome/princomp.py'
2021-07-13T22:19:51,620   adding 'centrosome/propagate.py'
2021-07-13T22:19:51,621   adding 'centrosome/radial_power_spectrum.py'
2021-07-13T22:19:51,623   adding 'centrosome/rankorder.py'
2021-07-13T22:19:51,625   adding 'centrosome/smooth.py'
2021-07-13T22:19:51,630   adding 'centrosome/threshold.py'
2021-07-13T22:19:51,631   adding 'centrosome/watershed.py'
2021-07-13T22:19:51,633   adding 'centrosome/zernike.py'
2021-07-13T22:19:51,636   adding 'centrosome-1.1.2.dist-info/LICENSE'
2021-07-13T22:19:51,637   adding 'centrosome-1.1.2.dist-info/METADATA'
2021-07-13T22:19:51,639   adding 'centrosome-1.1.2.dist-info/WHEEL'
2021-07-13T22:19:51,640   adding 'centrosome-1.1.2.dist-info/top_level.txt'
2021-07-13T22:19:51,641   adding 'centrosome-1.1.2.dist-info/RECORD'
2021-07-13T22:19:51,664   removing build/bdist.linux-armv7l/wheel
2021-07-13T22:19:51,831   Building wheel for centrosome (setup.py): finished with status 'done'
2021-07-13T22:19:51,850   Created wheel for centrosome: filename=centrosome-1.1.2-cp39-cp39-linux_armv7l.whl size=1312466 sha256=cd342081b329b4c49632f4db92e4e5ec1ab80735203d12699ec6c6193fac696e
2021-07-13T22:19:51,850   Stored in directory: /tmp/pip-ephem-wheel-cache-kaksh51m/wheels/37/0e/43/14752043ac205004afe11b5d34fd41316e5a52c39887df7187
2021-07-13T22:19:51,861 Successfully built centrosome
2021-07-13T22:19:51,911 Removed build tracker: '/tmp/pip-req-tracker-349ru04u'