2021-07-13T22:18:39,362 Created temporary directory: /tmp/pip-ephem-wheel-cache-hhfrezj6
2021-07-13T22:18:39,365 Created temporary directory: /tmp/pip-req-tracker-06t8q6nn
2021-07-13T22:18:39,365 Initialized build tracking at /tmp/pip-req-tracker-06t8q6nn
2021-07-13T22:18:39,365 Created build tracker: /tmp/pip-req-tracker-06t8q6nn
2021-07-13T22:18:39,365 Entered build tracker: /tmp/pip-req-tracker-06t8q6nn
2021-07-13T22:18:39,366 Created temporary directory: /tmp/pip-wheel-fius1y_g
2021-07-13T22:18:39,395 1 location(s) to search for versions of centrosome:
2021-07-13T22:18:39,395 * https://pypi.org/simple/centrosome/
2021-07-13T22:18:39,396 Fetching project page and analyzing links: https://pypi.org/simple/centrosome/
2021-07-13T22:18:39,396 Getting page https://pypi.org/simple/centrosome/
2021-07-13T22:18:39,398 Found index url https://pypi.org/simple
2021-07-13T22:18:39,514   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ef/32/0ebe5dd08e33dcddbf5acc9458f73fbfacbf0b1a86b1a02bc5600ea1ecb3/centrosome-1.0.1-cp27-none-macosx_10_10_x86_64.whl#sha256=82e6f56ba6a494bf9e9094a6a1e6a4a399b0ad83194d6820903899dc1f7bf223 (from https://pypi.org/simple/centrosome/)
2021-07-13T22:18:39,515   Found link https://files.pythonhosted.org/packages/d5/5b/39c53336367d2e76ef3e3698d1864f29d9e3f71e11fa6e44edb34f80ee7e/centrosome-1.0.1.tar.gz#sha256=1e6ad1eb53e5ffc911db3d89d1fa69e6a9b94602c378e0be56836a9f3c0d1f98 (from https://pypi.org/simple/centrosome/), version: 1.0.1
2021-07-13T22:18:39,515   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fb/5c/9d92237bfe242d4407c5e6129e2e7c3467e3dd90e81f1a4e53708638b42d/centrosome-1.0.2-cp27-none-macosx_10_10_intel.whl#sha256=420875a01d797fe1497368c5fca837dbbe38b31c12a9288ea548c2d8596cd942 (from https://pypi.org/simple/centrosome/)
2021-07-13T22:18:39,516   Found link https://files.pythonhosted.org/packages/53/a1/c0ddccf5afab91da1d244230d97e033e8ba46a6f8ffdabb5cf787cbd7c46/centrosome-1.0.2.tar.gz#sha256=f2ca282de415e3c5051456b83cfe2defb9cd04299cebe3af86820ffea46567ac (from https://pypi.org/simple/centrosome/), version: 1.0.2
2021-07-13T22:18:39,516   Found link https://files.pythonhosted.org/packages/1e/35/029b29583069050f7102777139c26f1c956684ee3cf5ff5be677ca567e4b/centrosome-1.0.3.tar.gz#sha256=852910ae30baae1e590f5db11385801156b3cbb9dfd5b413ffca73cc986a878d (from https://pypi.org/simple/centrosome/), version: 1.0.3
2021-07-13T22:18:39,516   Found link https://files.pythonhosted.org/packages/d5/06/7b563c0df0b04797b6003313ee76800ee03188d9caa40e1d2c22336c90f1/centrosome-1.0.4.tar.gz#sha256=e7a952e427f8cccb16e5ba7fe71f6f28dc242ca0b96b5bd83399928cb55530e3 (from https://pypi.org/simple/centrosome/), version: 1.0.4
2021-07-13T22:18:39,516   Found link https://files.pythonhosted.org/packages/fc/75/8bd2734c337bccbc5bbc863cf8ec262abedd3bb1173136cb168ae07312ca/centrosome-1.0.5.tar.gz#sha256=45aa7c64117058a81308b08a9d35b54e64ed4a0ac5325c9e880fe85fff5cd535 (from https://pypi.org/simple/centrosome/), version: 1.0.5
2021-07-13T22:18:39,517   Found link https://files.pythonhosted.org/packages/2e/0d/b02aec55505c9c6bf086ae925c84cac69a6d8e5d4ecc43439fcab1a237db/centrosome-1.0.6.tar.gz#sha256=474b9d992458186f1da038fe43da9997a63ebb11cc5c9383cdeae41f528d6552 (from https://pypi.org/simple/centrosome/), version: 1.0.6
2021-07-13T22:18:39,517   Found link https://files.pythonhosted.org/packages/15/72/ad891b9111e74d85dc9245c34e01817ded2dfc5c3be25dd9037b100ff1ae/centrosome-1.0.7.tar.gz#sha256=659d8ab5fb207d870832df9d5a2c844be7a9d1259fabad0a2b2b14250b505de2 (from https://pypi.org/simple/centrosome/), version: 1.0.7
2021-07-13T22:18:39,517   Found link https://files.pythonhosted.org/packages/bf/43/0f7a68d756c9f5667f61d12d0b8a6016f8b0b857204b8ff83ebef973ebc8/centrosome-1.0.8.tar.gz#sha256=47dc3abcb9f4b184ad9f875bf854d3fe221628de3e5999410dba66d3873f11f6 (from https://pypi.org/simple/centrosome/), version: 1.0.8
2021-07-13T22:18:39,518   Found link https://files.pythonhosted.org/packages/eb/8a/318cf9ffff05c494d490dd04db77a7646a361b69ec039f23b9251c10b725/centrosome-1.0.9.tar.gz#sha256=114fa352c11d601c6d8c422f001c95e91cdff2335a4254c79ff7c8d0bd66afd7 (from https://pypi.org/simple/centrosome/), version: 1.0.9
2021-07-13T22:18:39,518   Found link https://files.pythonhosted.org/packages/7a/d5/cd779a0a3f70c7f343a499d56a93cd4bed8e3cac857279d48db426f3adb1/centrosome-1.1.2.tar.gz#sha256=021a8c68ff5e03ce47d33e8e9aa61e342834c02225688d63fda4b8415acb4a32 (from https://pypi.org/simple/centrosome/), version: 1.1.2
2021-07-13T22:18:39,518   Found link https://files.pythonhosted.org/packages/7b/1e/e7471f3ab26ee17ada5fb13c51b3cd368f2a716bec576568884fbea7ac42/centrosome-1.1.4.tar.gz#sha256=04d56a25f2c5420cc8b5cebcc60f687f266742083211376e2d70b69b5fa0afb0 (from https://pypi.org/simple/centrosome/), version: 1.1.4
2021-07-13T22:18:39,518   Found link https://files.pythonhosted.org/packages/a3/a9/2ff82b223acda9404ef1d0c2aace37fde9c7266e80e1e2e959da60da8012/centrosome-1.1.5.tar.gz#sha256=b1dfbe45c3755837a350a855f47123ed306fdd306726fd0c69bb0900b38a5b4c (from https://pypi.org/simple/centrosome/), version: 1.1.5
2021-07-13T22:18:39,519   Found link https://files.pythonhosted.org/packages/8e/4d/246b4e375be61fb6a51a4511d749cb5aa845dc5e61d799eece6a1a87f7d1/centrosome-1.1.6.tar.gz#sha256=b253df00a19f51887de660033a28cac573930cf24b59a43599d9f4d60e12e9e8 (from https://pypi.org/simple/centrosome/), version: 1.1.6
2021-07-13T22:18:39,519   Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/87/07/1368796bbf9e61e307e73c8370a6eab1c76b23d2c0e66594a3b6b11575d5/centrosome-1.1.7-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=18df933288b1728b5e26a4f481689d8dbc7b043c70f56853f1f6c9de53366fca (from https://pypi.org/simple/centrosome/)
2021-07-13T22:18:39,519   Found link https://files.pythonhosted.org/packages/ac/01/7f46b624571a67082e8db4c2441609eefe05c655b3baca71316025122d95/centrosome-1.1.7.tar.gz#sha256=d82d14e0488ef93ef7872e73306d7481d605ca7eb46ce529d2d08d45783fce17 (from https://pypi.org/simple/centrosome/), version: 1.1.7
2021-07-13T22:18:39,520   Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ea/d8/7cda6ed98b8a45f79cba773ec6f9fd0034dc30596b518f76e34f38b05788/centrosome-1.2.0-cp38-cp38-macosx_10_15_x86_64.whl#sha256=06824e698104afabfd9f41e7ac479f26543fe55f1859d2540779621edf050d16 (from https://pypi.org/simple/centrosome/)
2021-07-13T22:18:39,520   Found link https://files.pythonhosted.org/packages/61/c7/e1a31b6a092a5b91952fe96801b2d3167fcb3bad8386c023dd83de4c4ab8/centrosome-1.2.0.tar.gz#sha256=c0b834e2e749c586077af95ab307c15d9bf498c4667f6031b0915efb94674bff (from https://pypi.org/simple/centrosome/), version: 1.2.0
2021-07-13T22:18:39,520 Skipping link: not a file: https://pypi.org/simple/centrosome/
2021-07-13T22:18:39,524 Given no hashes to check 1 links for project 'centrosome': discarding no candidates
2021-07-13T22:18:39,542 Collecting centrosome==1.1.4
2021-07-13T22:18:39,544   Created temporary directory: /tmp/pip-unpack-tstnh7z6
2021-07-13T22:18:40,052   Downloading centrosome-1.1.4.tar.gz (534 kB)
2021-07-13T22:18:40,451   Added centrosome==1.1.4 from https://files.pythonhosted.org/packages/7b/1e/e7471f3ab26ee17ada5fb13c51b3cd368f2a716bec576568884fbea7ac42/centrosome-1.1.4.tar.gz#sha256=04d56a25f2c5420cc8b5cebcc60f687f266742083211376e2d70b69b5fa0afb0 to build tracker '/tmp/pip-req-tracker-06t8q6nn'
2021-07-13T22:18:40,452     Running setup.py (path:/tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c/setup.py) egg_info for package centrosome
2021-07-13T22:18:40,453     Created temporary directory: /tmp/pip-pip-egg-info-2sj1o4wt
2021-07-13T22:18:40,453     Running command python setup.py egg_info
2021-07-13T22:18:42,479     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c/centrosome/_convex_hull.pyx
2021-07-13T22:18:42,479       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:44,274     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c/centrosome/_cpmorphology2.pyx
2021-07-13T22:18:44,274       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:46,760     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c/centrosome/_fastemd.pyx
2021-07-13T22:18:46,760       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:49,518     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c/centrosome/_filter.pyx
2021-07-13T22:18:49,518       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:52,128     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c/centrosome/_lapjv.pyx
2021-07-13T22:18:52,129       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:53,560     warning: centrosome/_lapjv.pyx:281:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-13T22:18:53,560     warning: centrosome/_lapjv.pyx:281:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-13T22:18:54,018     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c/centrosome/_propagate.pyx
2021-07-13T22:18:54,018       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T22:18:55,979     Compiling centrosome/_propagate.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-13T22:18:55,979     Compiling centrosome/_convex_hull.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-13T22:18:55,979     Compiling centrosome/_fastemd.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-13T22:18:55,979     Compiling centrosome/_cpmorphology2.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-13T22:18:55,980     Compiling centrosome/_lapjv.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-13T22:18:55,980     Compiling centrosome/_filter.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-13T22:18:55,980     [1/6] Cythonizing centrosome/_convex_hull.pyx
2021-07-13T22:18:55,980     [2/6] Cythonizing centrosome/_cpmorphology2.pyx
2021-07-13T22:18:55,980     [3/6] Cythonizing centrosome/_fastemd.pyx
2021-07-13T22:18:55,980     [4/6] Cythonizing centrosome/_filter.pyx
2021-07-13T22:18:55,980     [5/6] Cythonizing centrosome/_lapjv.pyx
2021-07-13T22:18:55,980     [6/6] Cythonizing centrosome/_propagate.pyx
2021-07-13T22:18:56,330     running egg_info
2021-07-13T22:18:56,334     creating /tmp/pip-pip-egg-info-2sj1o4wt/centrosome.egg-info
2021-07-13T22:18:56,336     writing /tmp/pip-pip-egg-info-2sj1o4wt/centrosome.egg-info/PKG-INFO
2021-07-13T22:18:56,338     writing dependency_links to /tmp/pip-pip-egg-info-2sj1o4wt/centrosome.egg-info/dependency_links.txt
2021-07-13T22:18:56,340     writing requirements to /tmp/pip-pip-egg-info-2sj1o4wt/centrosome.egg-info/requires.txt
2021-07-13T22:18:56,341     writing top-level names to /tmp/pip-pip-egg-info-2sj1o4wt/centrosome.egg-info/top_level.txt
2021-07-13T22:18:56,343     writing manifest file '/tmp/pip-pip-egg-info-2sj1o4wt/centrosome.egg-info/SOURCES.txt'
2021-07-13T22:18:56,533     reading manifest file '/tmp/pip-pip-egg-info-2sj1o4wt/centrosome.egg-info/SOURCES.txt'
2021-07-13T22:18:56,536     reading manifest template 'MANIFEST.in'
2021-07-13T22:18:56,550     adding license file 'LICENSE'
2021-07-13T22:18:56,554     writing manifest file '/tmp/pip-pip-egg-info-2sj1o4wt/centrosome.egg-info/SOURCES.txt'
2021-07-13T22:18:56,768   Source in /tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c has version 1.1.4, which satisfies requirement centrosome==1.1.4 from https://files.pythonhosted.org/packages/7b/1e/e7471f3ab26ee17ada5fb13c51b3cd368f2a716bec576568884fbea7ac42/centrosome-1.1.4.tar.gz#sha256=04d56a25f2c5420cc8b5cebcc60f687f266742083211376e2d70b69b5fa0afb0
2021-07-13T22:18:56,769   Removed centrosome==1.1.4 from https://files.pythonhosted.org/packages/7b/1e/e7471f3ab26ee17ada5fb13c51b3cd368f2a716bec576568884fbea7ac42/centrosome-1.1.4.tar.gz#sha256=04d56a25f2c5420cc8b5cebcc60f687f266742083211376e2d70b69b5fa0afb0 from build tracker '/tmp/pip-req-tracker-06t8q6nn'
2021-07-13T22:18:56,773 Created temporary directory: /tmp/pip-unpack-o81mja8v
2021-07-13T22:18:56,774 Building wheels for collected packages: centrosome
2021-07-13T22:18:56,778   Created temporary directory: /tmp/pip-wheel-h24i7plc
2021-07-13T22:18:56,778   Building wheel for centrosome (setup.py): started
2021-07-13T22:18:56,778   Destination directory: /tmp/pip-wheel-h24i7plc
2021-07-13T22:18:56,779   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fius1y_g/centrosome_37b5759ec67548cab1a9c3bbb7c58b9c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-h24i7plc
2021-07-13T22:18:58,929   running bdist_wheel
2021-07-13T22:18:58,935   running build
2021-07-13T22:18:58,935   running build_py
2021-07-13T22:18:59,075   creating build
2021-07-13T22:18:59,075   creating build/lib.linux-armv7l-3.9
2021-07-13T22:18:59,076   creating build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,077   copying centrosome/watershed.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,079   copying centrosome/radial_power_spectrum.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,081   copying centrosome/smooth.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,083   copying centrosome/bg_compensate.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,085   copying centrosome/index.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,087   copying centrosome/neighmovetrack.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,089   copying centrosome/otsu.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,092   copying centrosome/filter.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,096   copying centrosome/fastemd.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,098   copying centrosome/zernike.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,100   copying centrosome/rankorder.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,102   copying centrosome/cpmorphology.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,110   copying centrosome/princomp.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,112   copying centrosome/threshold.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,116   copying centrosome/kirsch.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,117   copying centrosome/__init__.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,119   copying centrosome/lapjv.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,121   copying centrosome/outline.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,123   copying centrosome/propagate.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,125   copying centrosome/haralick.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,127   copying centrosome/mode.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,130   running build_ext
2021-07-13T22:18:59,403   building 'centrosome._propagate' extension
2021-07-13T22:18:59,403   creating build/temp.linux-armv7l-3.9
2021-07-13T22:18:59,404   creating build/temp.linux-armv7l-3.9/centrosome
2021-07-13T22:18:59,404   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_propagate.c -o build/temp.linux-armv7l-3.9/centrosome/_propagate.o
2021-07-13T22:18:59,811   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:18:59,812                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:18:59,812                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:18:59,812                    from centrosome/_propagate.c:623:
2021-07-13T22:18:59,812   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:18:59,812      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:18:59,812         |  ^~~~~~~
2021-07-13T22:18:59,908   centrosome/_propagate.c: In function ‘__pyx_f_10centrosome_4heap_heap_from_numpy2’:
2021-07-13T22:18:59,911   centrosome/_propagate.c:4797:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-13T22:18:59,911    4797 |   if (((__pyx_t_4 > __pyx_t_3) != 0)) {
2021-07-13T22:18:59,911         |                   ^
2021-07-13T22:18:59,942   centrosome/_propagate.c: In function ‘__pyx_pymod_exec__propagate’:
2021-07-13T22:18:59,945   centrosome/_propagate.c:6301:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion]
2021-07-13T22:18:59,946    6301 |   import_array();
2021-07-13T22:18:59,946         |   ^~~~~~~~~~~~
2021-07-13T22:19:04,689   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_propagate.o -o build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:04,825   building 'centrosome._convex_hull' extension
2021-07-13T22:19:04,826   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_convex_hull.cpp -o build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o
2021-07-13T22:19:05,122   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:05,122                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:05,122                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:05,123                    from centrosome/_convex_hull.cpp:640:
2021-07-13T22:19:05,123   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:05,123      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:05,123         |  ^~~~~~~
2021-07-13T22:19:12,702   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o -o build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:12,889   building 'centrosome._fastemd' extension
2021-07-13T22:19:12,889   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_fastemd.cpp -o build/temp.linux-armv7l-3.9/centrosome/_fastemd.o
2021-07-13T22:19:13,179   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:13,179                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:13,179                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:13,180                    from centrosome/_fastemd.cpp:640:
2021-07-13T22:19:13,180   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:13,180      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:13,180         |  ^~~~~~~
2021-07-13T22:19:14,722   centrosome/_fastemd.cpp: In function ‘PyObject* __pyx_pf_10centrosome_8_fastemd_emd_hat_int32(PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*)’:
2021-07-13T22:19:14,723   centrosome/_fastemd.cpp:2765:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector<std::vector<long int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:14,723    2765 |   __pyx_t_10 = ((__pyx_v_plen < __pyx_v_vf.size()) != 0);
2021-07-13T22:19:14,723         |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2021-07-13T22:19:14,723   centrosome/_fastemd.cpp:2798:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:14,723    2798 |   __pyx_t_10 = ((__pyx_v_qlen < (__pyx_v_vf[0]).size()) != 0);
2021-07-13T22:19:14,724         |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T22:19:14,959   In file included from centrosome/include/emd_hat.hpp:59,
2021-07-13T22:19:14,960                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-13T22:19:14,960                    from centrosome/_fastemd.cpp:655:
2021-07-13T22:19:14,960   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’:
2021-07-13T22:19:14,960   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:14,960   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:14,960   centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:14,961      41 |     {for (NODE_T i=0; i<P.size(); ++i) {
2021-07-13T22:19:14,961         |                       ~^~~~~~~~~
2021-07-13T22:19:14,962   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’:
2021-07-13T22:19:14,962   centrosome/include/fastemd_hat.hpp:39:65:   required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:14,962   centrosome/_fastemd.cpp:2597:349:   required from here
2021-07-13T22:19:14,962   centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:14,964   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’:
2021-07-13T22:19:14,964   centrosome/include/fastemd_hat.hpp:51:63:   required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:14,964   centrosome/_fastemd.cpp:2649:346:   required from here
2021-07-13T22:19:14,964   centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,003   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘void fillFWithZeros(std::vector<std::vector<NUM_T> >&) [with NUM_T = long int]’:
2021-07-13T22:19:15,003   centrosome/include/emd_hat_impl.hpp:33:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:15,003   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:15,003   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:15,004   centrosome/include/emd_hat_impl.hpp:17:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::vector<long int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,004      17 |     for (NODE_T i= 0; i<F.size(); ++i) {
2021-07-13T22:19:15,004         |                       ~^~~~~~~~~
2021-07-13T22:19:15,004   centrosome/include/emd_hat_impl.hpp:18:28: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,004      18 |         for (NODE_T j= 0; j<F[i].size(); ++j) {
2021-07-13T22:19:15,004         |                           ~^~~~~~~~~~~~
2021-07-13T22:19:15,073   In file included from centrosome/include/emd_hat.hpp:59,
2021-07-13T22:19:15,073                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-13T22:19:15,073                    from centrosome/_fastemd.cpp:655:
2021-07-13T22:19:15,074   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’:
2021-07-13T22:19:15,074   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:15,074   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:15,074   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:15,074   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:15,074   centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,074     255 |     {for (NODE_T i=0; i<b.size(); ++i) {
2021-07-13T22:19:15,075         |                       ~^~~~~~~~~
2021-07-13T22:19:15,075   centrosome/include/emd_hat_impl.hpp:263:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > >, std::allocator<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,075     263 |     {for (NODE_T i=0; i<c.size(); ++i) {
2021-07-13T22:19:15,075         |                       ~^~~~~~~~~
2021-07-13T22:19:15,110   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’:
2021-07-13T22:19:15,111   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:15,111   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’
2021-07-13T22:19:15,111   centrosome/include/fastemd_hat.hpp:39:65:   required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:15,111   centrosome/_fastemd.cpp:2597:349:   required from here
2021-07-13T22:19:15,111   centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,111     255 |     {for (NODE_T i=0; i<b.size(); ++i) {
2021-07-13T22:19:15,111         |                       ~^~~~~~~~~
2021-07-13T22:19:15,112   centrosome/include/emd_hat_impl.hpp:263:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > >, std::allocator<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,112     263 |     {for (NODE_T i=0; i<c.size(); ++i) {
2021-07-13T22:19:15,112         |                       ~^~~~~~~~~
2021-07-13T22:19:15,112   centrosome/include/emd_hat_impl.hpp:296:51: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > >, std::allocator<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,113     296 |         for (NODE_T new_name_from=0; new_name_from<flows.size(); ++new_name_from) {
2021-07-13T22:19:15,113         |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~
2021-07-13T22:19:15,121   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’:
2021-07-13T22:19:15,121   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:15,122   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’
2021-07-13T22:19:15,122   centrosome/include/fastemd_hat.hpp:51:63:   required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:15,122   centrosome/_fastemd.cpp:2649:346:   required from here
2021-07-13T22:19:15,122   centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,122     255 |     {for (NODE_T i=0; i<b.size(); ++i) {
2021-07-13T22:19:15,122         |                       ~^~~~~~~~~
2021-07-13T22:19:15,123   centrosome/include/emd_hat_impl.hpp:263:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > >, std::allocator<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,123     263 |     {for (NODE_T i=0; i<c.size(); ++i) {
2021-07-13T22:19:15,123         |                       ~^~~~~~~~~
2021-07-13T22:19:15,123   centrosome/include/emd_hat_impl.hpp:296:51: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > >, std::allocator<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,124     296 |         for (NODE_T new_name_from=0; new_name_from<flows.size(); ++new_name_from) {
2021-07-13T22:19:15,124         |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~
2021-07-13T22:19:15,317   In file included from centrosome/include/emd_hat_impl.hpp:8,
2021-07-13T22:19:15,318                    from centrosome/include/emd_hat.hpp:59,
2021-07-13T22:19:15,318                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-13T22:19:15,318                    from centrosome/_fastemd.cpp:655:
2021-07-13T22:19:15,318   centrosome/include/min_cost_flow.hpp: In instantiation of ‘void min_cost_flow<NUM_T>::compute_shortest_path(std::vector<NUM_T>&, std::vector<int>&, NODE_T, std::vector<std::__cxx11::list<edge1<NUM_T> > >&, std::vector<std::__cxx11::list<edge2<NUM_T> > >&, const std::vector<NUM_T>&, NODE_T&) [with NUM_T = long int; NODE_T = int]’:
2021-07-13T22:19:15,318   centrosome/include/min_cost_flow.hpp:155:17:   required from ‘NUM_T min_cost_flow<NUM_T>::operator()(std::vector<NUM_T>&, const std::vector<std::__cxx11::list<edge<NUM_T> > >&, std::vector<std::__cxx11::list<edge0<NUM_T> > >&) [with NUM_T = long int]’
2021-07-13T22:19:15,318   centrosome/include/emd_hat_impl.hpp:291:24:   required from ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:15,319   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:15,319   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:15,319   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:15,319   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:15,319   centrosome/include/min_cost_flow.hpp:321:37: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,319     321 |                 if ( (_nodes_to_Q[v]<Q.size()) && (alt<Q[_nodes_to_Q[v]]._dist) ) {
2021-07-13T22:19:15,320         |                      ~~~~~~~~~~~~~~~^~~~~~~~~~
2021-07-13T22:19:15,320   centrosome/include/min_cost_flow.hpp:332:41: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,320     332 |                     if ( (_nodes_to_Q[v]<Q.size()) && (alt<Q[_nodes_to_Q[v]]._dist) )  {
2021-07-13T22:19:15,320         |                          ~~~~~~~~~~~~~~~^~~~~~~~~~
2021-07-13T22:19:15,326   In file included from centrosome/_fastemd.cpp:654:
2021-07-13T22:19:15,326   centrosome/include/flow_utils.hpp: In instantiation of ‘void return_flow_from_to_transhipment_vertex(const std::vector<std::vector<NUM_T> >&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, std::vector<NUM_T>&, std::vector<NUM_T>&) [with NUM_T = long int]’:
2021-07-13T22:19:15,326   centrosome/include/flow_utils.hpp:46:44:   required from ‘void transform_flow_to_regular(std::vector<std::vector<NUM_T> >&, const std::vector<NUM_T>&, const std::vector<NUM_T>&) [with NUM_T = long int]’
2021-07-13T22:19:15,326   centrosome/include/emd_hat_impl.hpp:322:70:   required from ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:15,327   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:15,327   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:15,327   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:15,327   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:15,327   centrosome/include/flow_utils.hpp:25:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,327      25 |     for (NODE_T i= 0; i<P.size(); ++i) {
2021-07-13T22:19:15,327         |                       ~^~~~~~~~~
2021-07-13T22:19:15,328   centrosome/include/flow_utils.hpp:26:28: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,328      26 |         for (NODE_T j= 0; j<P.size(); ++j) {
2021-07-13T22:19:15,328         |                           ~^~~~~~~~~
2021-07-13T22:19:15,445   In file included from centrosome/include/emd_hat_impl.hpp:8,
2021-07-13T22:19:15,445                    from centrosome/include/emd_hat.hpp:59,
2021-07-13T22:19:15,445                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-13T22:19:15,445                    from centrosome/_fastemd.cpp:655:
2021-07-13T22:19:15,445   centrosome/include/min_cost_flow.hpp: In instantiation of ‘void min_cost_flow<NUM_T>::heapify(std::vector<edge3<NUM_T> >&, std::vector<int>&, NODE_T) [with NUM_T = long int; NODE_T = int]’:
2021-07-13T22:19:15,446   centrosome/include/min_cost_flow.hpp:392:9:   required from ‘void min_cost_flow<NUM_T>::heap_remove_first(std::vector<edge3<NUM_T> >&, std::vector<int>&) [with NUM_T = long int]’
2021-07-13T22:19:15,446   centrosome/include/min_cost_flow.hpp:313:13:   required from ‘void min_cost_flow<NUM_T>::compute_shortest_path(std::vector<NUM_T>&, std::vector<int>&, NODE_T, std::vector<std::__cxx11::list<edge1<NUM_T> > >&, std::vector<std::__cxx11::list<edge2<NUM_T> > >&, const std::vector<NUM_T>&, NODE_T&) [with NUM_T = long int; NODE_T = int]’
2021-07-13T22:19:15,446   centrosome/include/min_cost_flow.hpp:155:17:   required from ‘NUM_T min_cost_flow<NUM_T>::operator()(std::vector<NUM_T>&, const std::vector<std::__cxx11::list<edge<NUM_T> > >&, std::vector<std::__cxx11::list<edge0<NUM_T> > >&) [with NUM_T = long int]’
2021-07-13T22:19:15,446   centrosome/include/emd_hat_impl.hpp:291:24:   required from ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:15,446   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-13T22:19:15,446   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-13T22:19:15,447   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-13T22:19:15,447   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-13T22:19:15,447   centrosome/include/min_cost_flow.hpp:405:20: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,447     405 |             if ( (l<Q.size()) && (Q[l]._dist<Q[i]._dist) ) {
2021-07-13T22:19:15,447         |                  ~~^~~~~~~~~~
2021-07-13T22:19:15,448   centrosome/include/min_cost_flow.hpp:410:20: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-13T22:19:15,448     410 |             if ( (r<Q.size())&& (Q[r]._dist<Q[smallest]._dist) ) {
2021-07-13T22:19:15,448         |                  ~~^~~~~~~~~~
2021-07-13T22:19:25,571   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_fastemd.o -o build/lib.linux-armv7l-3.9/centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:25,920   building 'centrosome._cpmorphology2' extension
2021-07-13T22:19:25,921   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_cpmorphology2.cpp -o build/temp.linux-armv7l-3.9/centrosome/_cpmorphology2.o
2021-07-13T22:19:26,211   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:26,212                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:26,212                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:26,212                    from centrosome/_cpmorphology2.cpp:640:
2021-07-13T22:19:26,212   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:26,212      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:26,212         |  ^~~~~~~
2021-07-13T22:19:27,478   centrosome/_cpmorphology2.cpp: In function ‘PyObject* __pyx_pf_10centrosome_14_cpmorphology2_8index_lookup(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyObject*, PyObject*)’:
2021-07-13T22:19:27,478   centrosome/_cpmorphology2.cpp:6191:29: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_5numpy_uint32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2021-07-13T22:19:27,478    6191 |     __pyx_t_6 = ((__pyx_t_9 == __pyx_v_hit_count) != 0);
2021-07-13T22:19:27,479         |                   ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2021-07-13T22:19:27,635   centrosome/_cpmorphology2.cpp: In function ‘int __pyx_pymod_exec__cpmorphology2(PyObject*)’:
2021-07-13T22:19:27,635   centrosome/_cpmorphology2.cpp:10432:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-13T22:19:27,635   10432 |   import_array();
2021-07-13T22:19:27,635         |   ^~~~~~~~~~~~
2021-07-13T22:19:37,542   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_cpmorphology2.o -o build/lib.linux-armv7l-3.9/centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:37,727   building 'centrosome._lapjv' extension
2021-07-13T22:19:37,728   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_lapjv.cpp -o build/temp.linux-armv7l-3.9/centrosome/_lapjv.o
2021-07-13T22:19:38,013   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:38,013                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:38,014                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:38,014                    from centrosome/_lapjv.cpp:640:
2021-07-13T22:19:38,014   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:38,014      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:38,014         |  ^~~~~~~
2021-07-13T22:19:39,341   centrosome/_lapjv.cpp: In function ‘int __pyx_pymod_exec__lapjv(PyObject*)’:
2021-07-13T22:19:39,341   centrosome/_lapjv.cpp:7984:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-13T22:19:39,341    7984 |   import_array();
2021-07-13T22:19:39,341         |   ^~~~~~~~~~~~
2021-07-13T22:19:42,336   centrosome/_lapjv.cpp: In function ‘PyObject* __pyx_pf_10centrosome_6_lapjv_2augmenting_row_reduction(PyObject*, int, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*)’:
2021-07-13T22:19:42,336   centrosome/_lapjv.cpp:3484:44: warning: ‘__pyx_v_j2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-13T22:19:42,337    3484 |             __pyx_v_i1 = (__pyx_v_p_y_base[__pyx_v_j1]);
2021-07-13T22:19:42,337         |                                            ^~~~~~~~~~
2021-07-13T22:19:42,337   centrosome/_lapjv.cpp:3427:42: warning: ‘__pyx_v_j1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-13T22:19:42,337    3427 |           __pyx_v_i1 = (__pyx_v_p_y_base[__pyx_v_j1]);
2021-07-13T22:19:42,337         |                                          ^~~~~~~~~~
2021-07-13T22:19:43,888   centrosome/_lapjv.cpp: In function ‘PyObject* __pyx_pf_10centrosome_6_lapjv_4augment(PyObject*, int, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*)’:
2021-07-13T22:19:43,888   centrosome/_lapjv.cpp:5713:24: warning: ‘__pyx_v_umin’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-13T22:19:43,888    5713 |             __pyx_v_u1 = (((__pyx_v_p_c[__pyx_v_jidx]) - (__pyx_v_p_v_base[__pyx_v_j1])) - __pyx_v_umin);
2021-07-13T22:19:43,889         |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T22:19:47,300   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_lapjv.o -o build/lib.linux-armv7l-3.9/centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:47,489   building 'centrosome._filter' extension
2021-07-13T22:19:47,489   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_filter.cpp -o build/temp.linux-armv7l-3.9/centrosome/_filter.o
2021-07-13T22:19:47,780   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T22:19:47,781                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T22:19:47,781                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T22:19:47,781                    from centrosome/_filter.cpp:640:
2021-07-13T22:19:47,781   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T22:19:47,781      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T22:19:47,781         |  ^~~~~~~
2021-07-13T22:19:49,005   centrosome/_filter.cpp: In function ‘int __pyx_pymod_exec__filter(PyObject*)’:
2021-07-13T22:19:49,005   centrosome/_filter.cpp:8478:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-13T22:19:49,005    8478 |   import_array();
2021-07-13T22:19:49,005         |   ^~~~~~~~~~~~
2021-07-13T22:19:55,037   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_filter.o -o build/lib.linux-armv7l-3.9/centrosome/_filter.cpython-39-arm-linux-gnueabihf.so
2021-07-13T22:19:55,239   installing to build/bdist.linux-armv7l/wheel
2021-07-13T22:19:55,240   running install
2021-07-13T22:19:55,241   running install_lib
2021-07-13T22:19:55,246   creating build/bdist.linux-armv7l
2021-07-13T22:19:55,246   creating build/bdist.linux-armv7l/wheel
2021-07-13T22:19:55,249   creating build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,250   copying build/lib.linux-armv7l-3.9/centrosome/watershed.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,252   copying build/lib.linux-armv7l-3.9/centrosome/radial_power_spectrum.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,254   copying build/lib.linux-armv7l-3.9/centrosome/smooth.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,256   copying build/lib.linux-armv7l-3.9/centrosome/bg_compensate.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,259   copying build/lib.linux-armv7l-3.9/centrosome/index.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,261   copying build/lib.linux-armv7l-3.9/centrosome/neighmovetrack.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,263   copying build/lib.linux-armv7l-3.9/centrosome/otsu.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,266   copying build/lib.linux-armv7l-3.9/centrosome/filter.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,271   copying build/lib.linux-armv7l-3.9/centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,306   copying build/lib.linux-armv7l-3.9/centrosome/fastemd.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,307   copying build/lib.linux-armv7l-3.9/centrosome/zernike.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,310   copying build/lib.linux-armv7l-3.9/centrosome/rankorder.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,311   copying build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,321   copying build/lib.linux-armv7l-3.9/centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,335   copying build/lib.linux-armv7l-3.9/centrosome/cpmorphology.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,342   copying build/lib.linux-armv7l-3.9/centrosome/princomp.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,344   copying build/lib.linux-armv7l-3.9/centrosome/threshold.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,347   copying build/lib.linux-armv7l-3.9/centrosome/kirsch.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,349   copying build/lib.linux-armv7l-3.9/centrosome/__init__.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,351   copying build/lib.linux-armv7l-3.9/centrosome/lapjv.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,354   copying build/lib.linux-armv7l-3.9/centrosome/outline.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,355   copying build/lib.linux-armv7l-3.9/centrosome/propagate.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,357   copying build/lib.linux-armv7l-3.9/centrosome/haralick.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,360   copying build/lib.linux-armv7l-3.9/centrosome/mode.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,362   copying build/lib.linux-armv7l-3.9/centrosome/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,376   copying build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,386   copying build/lib.linux-armv7l-3.9/centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-13T22:19:55,402   running install_egg_info
2021-07-13T22:19:55,428   running egg_info
2021-07-13T22:19:55,430   writing centrosome.egg-info/PKG-INFO
2021-07-13T22:19:55,431   writing dependency_links to centrosome.egg-info/dependency_links.txt
2021-07-13T22:19:55,433   writing requirements to centrosome.egg-info/requires.txt
2021-07-13T22:19:55,435   writing top-level names to centrosome.egg-info/top_level.txt
2021-07-13T22:19:55,480   reading manifest file 'centrosome.egg-info/SOURCES.txt'
2021-07-13T22:19:55,486   reading manifest template 'MANIFEST.in'
2021-07-13T22:19:55,510   adding license file 'LICENSE'
2021-07-13T22:19:55,514   writing manifest file 'centrosome.egg-info/SOURCES.txt'
2021-07-13T22:19:55,516   Copying centrosome.egg-info to build/bdist.linux-armv7l/wheel/centrosome-1.1.4-py3.9.egg-info
2021-07-13T22:19:55,527   running install_scripts
2021-07-13T22:19:55,573   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-13T22:19:55,578   creating build/bdist.linux-armv7l/wheel/centrosome-1.1.4.dist-info/WHEEL
2021-07-13T22:19:55,580   creating '/tmp/pip-wheel-h24i7plc/centrosome-1.1.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T22:19:55,582   adding 'centrosome/__init__.py'
2021-07-13T22:19:55,665   adding 'centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:55,792   adding 'centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:56,002   adding 'centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:56,097   adding 'centrosome/_filter.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:56,191   adding 'centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:56,255   adding 'centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T22:19:56,260   adding 'centrosome/bg_compensate.py'
2021-07-13T22:19:56,283   adding 'centrosome/cpmorphology.py'
2021-07-13T22:19:56,286   adding 'centrosome/fastemd.py'
2021-07-13T22:19:56,295   adding 'centrosome/filter.py'
2021-07-13T22:19:56,298   adding 'centrosome/haralick.py'
2021-07-13T22:19:56,299   adding 'centrosome/index.py'
2021-07-13T22:19:56,300   adding 'centrosome/kirsch.py'
2021-07-13T22:19:56,302   adding 'centrosome/lapjv.py'
2021-07-13T22:19:56,304   adding 'centrosome/mode.py'
2021-07-13T22:19:56,306   adding 'centrosome/neighmovetrack.py'
2021-07-13T22:19:56,308   adding 'centrosome/otsu.py'
2021-07-13T22:19:56,309   adding 'centrosome/outline.py'
2021-07-13T22:19:56,310   adding 'centrosome/princomp.py'
2021-07-13T22:19:56,311   adding 'centrosome/propagate.py'
2021-07-13T22:19:56,312   adding 'centrosome/radial_power_spectrum.py'
2021-07-13T22:19:56,314   adding 'centrosome/rankorder.py'
2021-07-13T22:19:56,315   adding 'centrosome/smooth.py'
2021-07-13T22:19:56,320   adding 'centrosome/threshold.py'
2021-07-13T22:19:56,321   adding 'centrosome/watershed.py'
2021-07-13T22:19:56,323   adding 'centrosome/zernike.py'
2021-07-13T22:19:56,326   adding 'centrosome-1.1.4.dist-info/LICENSE'
2021-07-13T22:19:56,327   adding 'centrosome-1.1.4.dist-info/METADATA'
2021-07-13T22:19:56,327   adding 'centrosome-1.1.4.dist-info/WHEEL'
2021-07-13T22:19:56,328   adding 'centrosome-1.1.4.dist-info/top_level.txt'
2021-07-13T22:19:56,329   adding 'centrosome-1.1.4.dist-info/RECORD'
2021-07-13T22:19:56,357   removing build/bdist.linux-armv7l/wheel
2021-07-13T22:19:56,530   Building wheel for centrosome (setup.py): finished with status 'done'
2021-07-13T22:19:56,550   Created wheel for centrosome: filename=centrosome-1.1.4-cp39-cp39-linux_armv7l.whl size=1312215 sha256=99b7e597acee3f5662bce829a2534cc14b697320403abe1face47348a03807b4
2021-07-13T22:19:56,550   Stored in directory: /tmp/pip-ephem-wheel-cache-hhfrezj6/wheels/a0/77/2f/6ef924933d0930005f14e7c372c53e9fab0c3e896dfd1e7ed0
2021-07-13T22:19:56,563 Successfully built centrosome
2021-07-13T22:19:56,619 Removed build tracker: '/tmp/pip-req-tracker-06t8q6nn'