2021-07-13T22:35:47,997 Created temporary directory: /tmp/pip-ephem-wheel-cache-92h_n6hd 2021-07-13T22:35:48,000 Created temporary directory: /tmp/pip-req-tracker-xnz2031t 2021-07-13T22:35:48,000 Initialized build tracking at /tmp/pip-req-tracker-xnz2031t 2021-07-13T22:35:48,001 Created build tracker: /tmp/pip-req-tracker-xnz2031t 2021-07-13T22:35:48,001 Entered build tracker: /tmp/pip-req-tracker-xnz2031t 2021-07-13T22:35:48,001 Created temporary directory: /tmp/pip-wheel-ncqet4hx 2021-07-13T22:35:48,033 1 location(s) to search for versions of centrosome: 2021-07-13T22:35:48,033 * https://pypi.org/simple/centrosome/ 2021-07-13T22:35:48,033 Fetching project page and analyzing links: https://pypi.org/simple/centrosome/ 2021-07-13T22:35:48,034 Getting page https://pypi.org/simple/centrosome/ 2021-07-13T22:35:48,035 Found index url https://pypi.org/simple 2021-07-13T22:35:48,244 Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ef/32/0ebe5dd08e33dcddbf5acc9458f73fbfacbf0b1a86b1a02bc5600ea1ecb3/centrosome-1.0.1-cp27-none-macosx_10_10_x86_64.whl#sha256=82e6f56ba6a494bf9e9094a6a1e6a4a399b0ad83194d6820903899dc1f7bf223 (from https://pypi.org/simple/centrosome/) 2021-07-13T22:35:48,244 Found link https://files.pythonhosted.org/packages/d5/5b/39c53336367d2e76ef3e3698d1864f29d9e3f71e11fa6e44edb34f80ee7e/centrosome-1.0.1.tar.gz#sha256=1e6ad1eb53e5ffc911db3d89d1fa69e6a9b94602c378e0be56836a9f3c0d1f98 (from https://pypi.org/simple/centrosome/), version: 1.0.1 2021-07-13T22:35:48,245 Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fb/5c/9d92237bfe242d4407c5e6129e2e7c3467e3dd90e81f1a4e53708638b42d/centrosome-1.0.2-cp27-none-macosx_10_10_intel.whl#sha256=420875a01d797fe1497368c5fca837dbbe38b31c12a9288ea548c2d8596cd942 (from https://pypi.org/simple/centrosome/) 2021-07-13T22:35:48,245 Found link https://files.pythonhosted.org/packages/53/a1/c0ddccf5afab91da1d244230d97e033e8ba46a6f8ffdabb5cf787cbd7c46/centrosome-1.0.2.tar.gz#sha256=f2ca282de415e3c5051456b83cfe2defb9cd04299cebe3af86820ffea46567ac (from https://pypi.org/simple/centrosome/), version: 1.0.2 2021-07-13T22:35:48,245 Found link https://files.pythonhosted.org/packages/1e/35/029b29583069050f7102777139c26f1c956684ee3cf5ff5be677ca567e4b/centrosome-1.0.3.tar.gz#sha256=852910ae30baae1e590f5db11385801156b3cbb9dfd5b413ffca73cc986a878d (from https://pypi.org/simple/centrosome/), version: 1.0.3 2021-07-13T22:35:48,246 Found link https://files.pythonhosted.org/packages/d5/06/7b563c0df0b04797b6003313ee76800ee03188d9caa40e1d2c22336c90f1/centrosome-1.0.4.tar.gz#sha256=e7a952e427f8cccb16e5ba7fe71f6f28dc242ca0b96b5bd83399928cb55530e3 (from https://pypi.org/simple/centrosome/), version: 1.0.4 2021-07-13T22:35:48,246 Found link https://files.pythonhosted.org/packages/fc/75/8bd2734c337bccbc5bbc863cf8ec262abedd3bb1173136cb168ae07312ca/centrosome-1.0.5.tar.gz#sha256=45aa7c64117058a81308b08a9d35b54e64ed4a0ac5325c9e880fe85fff5cd535 (from https://pypi.org/simple/centrosome/), version: 1.0.5 2021-07-13T22:35:48,246 Found link https://files.pythonhosted.org/packages/2e/0d/b02aec55505c9c6bf086ae925c84cac69a6d8e5d4ecc43439fcab1a237db/centrosome-1.0.6.tar.gz#sha256=474b9d992458186f1da038fe43da9997a63ebb11cc5c9383cdeae41f528d6552 (from https://pypi.org/simple/centrosome/), version: 1.0.6 2021-07-13T22:35:48,246 Found link https://files.pythonhosted.org/packages/15/72/ad891b9111e74d85dc9245c34e01817ded2dfc5c3be25dd9037b100ff1ae/centrosome-1.0.7.tar.gz#sha256=659d8ab5fb207d870832df9d5a2c844be7a9d1259fabad0a2b2b14250b505de2 (from https://pypi.org/simple/centrosome/), version: 1.0.7 2021-07-13T22:35:48,247 Found link https://files.pythonhosted.org/packages/bf/43/0f7a68d756c9f5667f61d12d0b8a6016f8b0b857204b8ff83ebef973ebc8/centrosome-1.0.8.tar.gz#sha256=47dc3abcb9f4b184ad9f875bf854d3fe221628de3e5999410dba66d3873f11f6 (from https://pypi.org/simple/centrosome/), version: 1.0.8 2021-07-13T22:35:48,247 Found link https://files.pythonhosted.org/packages/eb/8a/318cf9ffff05c494d490dd04db77a7646a361b69ec039f23b9251c10b725/centrosome-1.0.9.tar.gz#sha256=114fa352c11d601c6d8c422f001c95e91cdff2335a4254c79ff7c8d0bd66afd7 (from https://pypi.org/simple/centrosome/), version: 1.0.9 2021-07-13T22:35:48,247 Found link https://files.pythonhosted.org/packages/7a/d5/cd779a0a3f70c7f343a499d56a93cd4bed8e3cac857279d48db426f3adb1/centrosome-1.1.2.tar.gz#sha256=021a8c68ff5e03ce47d33e8e9aa61e342834c02225688d63fda4b8415acb4a32 (from https://pypi.org/simple/centrosome/), version: 1.1.2 2021-07-13T22:35:48,248 Found link https://files.pythonhosted.org/packages/7b/1e/e7471f3ab26ee17ada5fb13c51b3cd368f2a716bec576568884fbea7ac42/centrosome-1.1.4.tar.gz#sha256=04d56a25f2c5420cc8b5cebcc60f687f266742083211376e2d70b69b5fa0afb0 (from https://pypi.org/simple/centrosome/), version: 1.1.4 2021-07-13T22:35:48,248 Found link https://files.pythonhosted.org/packages/a3/a9/2ff82b223acda9404ef1d0c2aace37fde9c7266e80e1e2e959da60da8012/centrosome-1.1.5.tar.gz#sha256=b1dfbe45c3755837a350a855f47123ed306fdd306726fd0c69bb0900b38a5b4c (from https://pypi.org/simple/centrosome/), version: 1.1.5 2021-07-13T22:35:48,248 Found link https://files.pythonhosted.org/packages/8e/4d/246b4e375be61fb6a51a4511d749cb5aa845dc5e61d799eece6a1a87f7d1/centrosome-1.1.6.tar.gz#sha256=b253df00a19f51887de660033a28cac573930cf24b59a43599d9f4d60e12e9e8 (from https://pypi.org/simple/centrosome/), version: 1.1.6 2021-07-13T22:35:48,249 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/87/07/1368796bbf9e61e307e73c8370a6eab1c76b23d2c0e66594a3b6b11575d5/centrosome-1.1.7-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=18df933288b1728b5e26a4f481689d8dbc7b043c70f56853f1f6c9de53366fca (from https://pypi.org/simple/centrosome/) 2021-07-13T22:35:48,249 Found link https://files.pythonhosted.org/packages/ac/01/7f46b624571a67082e8db4c2441609eefe05c655b3baca71316025122d95/centrosome-1.1.7.tar.gz#sha256=d82d14e0488ef93ef7872e73306d7481d605ca7eb46ce529d2d08d45783fce17 (from https://pypi.org/simple/centrosome/), version: 1.1.7 2021-07-13T22:35:48,250 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ea/d8/7cda6ed98b8a45f79cba773ec6f9fd0034dc30596b518f76e34f38b05788/centrosome-1.2.0-cp38-cp38-macosx_10_15_x86_64.whl#sha256=06824e698104afabfd9f41e7ac479f26543fe55f1859d2540779621edf050d16 (from https://pypi.org/simple/centrosome/) 2021-07-13T22:35:48,250 Found link https://files.pythonhosted.org/packages/61/c7/e1a31b6a092a5b91952fe96801b2d3167fcb3bad8386c023dd83de4c4ab8/centrosome-1.2.0.tar.gz#sha256=c0b834e2e749c586077af95ab307c15d9bf498c4667f6031b0915efb94674bff (from https://pypi.org/simple/centrosome/), version: 1.2.0 2021-07-13T22:35:48,250 Skipping link: not a file: https://pypi.org/simple/centrosome/ 2021-07-13T22:35:48,256 Given no hashes to check 1 links for project 'centrosome': discarding no candidates 2021-07-13T22:35:48,275 Collecting centrosome==1.1.5 2021-07-13T22:35:48,277 Created temporary directory: /tmp/pip-unpack-rg6w0eee 2021-07-13T22:35:48,671 Downloading centrosome-1.1.5.tar.gz (534 kB) 2021-07-13T22:35:48,995 Added centrosome==1.1.5 from https://files.pythonhosted.org/packages/a3/a9/2ff82b223acda9404ef1d0c2aace37fde9c7266e80e1e2e959da60da8012/centrosome-1.1.5.tar.gz#sha256=b1dfbe45c3755837a350a855f47123ed306fdd306726fd0c69bb0900b38a5b4c to build tracker '/tmp/pip-req-tracker-xnz2031t' 2021-07-13T22:35:48,996 Running setup.py (path:/tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026/setup.py) egg_info for package centrosome 2021-07-13T22:35:48,996 Created temporary directory: /tmp/pip-pip-egg-info-txt5ukp_ 2021-07-13T22:35:48,997 Running command python setup.py egg_info 2021-07-13T22:35:51,048 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026/centrosome/_fastemd.pyx 2021-07-13T22:35:51,048 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T22:35:53,894 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026/centrosome/_convex_hull.pyx 2021-07-13T22:35:53,894 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T22:35:55,580 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026/centrosome/_cpmorphology2.pyx 2021-07-13T22:35:55,580 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T22:35:58,120 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026/centrosome/_filter.pyx 2021-07-13T22:35:58,120 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T22:36:00,722 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026/centrosome/_lapjv.pyx 2021-07-13T22:36:00,723 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T22:36:02,192 warning: centrosome/_lapjv.pyx:281:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-13T22:36:02,193 warning: centrosome/_lapjv.pyx:281:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-13T22:36:02,649 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026/centrosome/_propagate.pyx 2021-07-13T22:36:02,649 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T22:36:04,605 Compiling centrosome/_propagate.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T22:36:04,606 Compiling centrosome/_convex_hull.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T22:36:04,606 Compiling centrosome/_lapjv.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T22:36:04,606 Compiling centrosome/_fastemd.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T22:36:04,606 Compiling centrosome/_cpmorphology2.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T22:36:04,606 Compiling centrosome/_filter.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T22:36:04,607 [1/6] Cythonizing centrosome/_fastemd.pyx 2021-07-13T22:36:04,607 [2/6] Cythonizing centrosome/_convex_hull.pyx 2021-07-13T22:36:04,607 [3/6] Cythonizing centrosome/_cpmorphology2.pyx 2021-07-13T22:36:04,607 [4/6] Cythonizing centrosome/_filter.pyx 2021-07-13T22:36:04,607 [5/6] Cythonizing centrosome/_lapjv.pyx 2021-07-13T22:36:04,607 [6/6] Cythonizing centrosome/_propagate.pyx 2021-07-13T22:36:04,938 running egg_info 2021-07-13T22:36:04,940 creating /tmp/pip-pip-egg-info-txt5ukp_/centrosome.egg-info 2021-07-13T22:36:04,941 writing /tmp/pip-pip-egg-info-txt5ukp_/centrosome.egg-info/PKG-INFO 2021-07-13T22:36:04,944 writing dependency_links to /tmp/pip-pip-egg-info-txt5ukp_/centrosome.egg-info/dependency_links.txt 2021-07-13T22:36:04,946 writing requirements to /tmp/pip-pip-egg-info-txt5ukp_/centrosome.egg-info/requires.txt 2021-07-13T22:36:04,947 writing top-level names to /tmp/pip-pip-egg-info-txt5ukp_/centrosome.egg-info/top_level.txt 2021-07-13T22:36:04,948 writing manifest file '/tmp/pip-pip-egg-info-txt5ukp_/centrosome.egg-info/SOURCES.txt' 2021-07-13T22:36:05,110 reading manifest file '/tmp/pip-pip-egg-info-txt5ukp_/centrosome.egg-info/SOURCES.txt' 2021-07-13T22:36:05,111 reading manifest template 'MANIFEST.in' 2021-07-13T22:36:05,122 adding license file 'LICENSE' 2021-07-13T22:36:05,125 writing manifest file '/tmp/pip-pip-egg-info-txt5ukp_/centrosome.egg-info/SOURCES.txt' 2021-07-13T22:36:05,313 Source in /tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026 has version 1.1.5, which satisfies requirement centrosome==1.1.5 from https://files.pythonhosted.org/packages/a3/a9/2ff82b223acda9404ef1d0c2aace37fde9c7266e80e1e2e959da60da8012/centrosome-1.1.5.tar.gz#sha256=b1dfbe45c3755837a350a855f47123ed306fdd306726fd0c69bb0900b38a5b4c 2021-07-13T22:36:05,314 Removed centrosome==1.1.5 from https://files.pythonhosted.org/packages/a3/a9/2ff82b223acda9404ef1d0c2aace37fde9c7266e80e1e2e959da60da8012/centrosome-1.1.5.tar.gz#sha256=b1dfbe45c3755837a350a855f47123ed306fdd306726fd0c69bb0900b38a5b4c from build tracker '/tmp/pip-req-tracker-xnz2031t' 2021-07-13T22:36:05,319 Created temporary directory: /tmp/pip-unpack-3td79rn8 2021-07-13T22:36:05,319 Building wheels for collected packages: centrosome 2021-07-13T22:36:05,323 Created temporary directory: /tmp/pip-wheel-um2s3a0h 2021-07-13T22:36:05,324 Building wheel for centrosome (setup.py): started 2021-07-13T22:36:05,324 Destination directory: /tmp/pip-wheel-um2s3a0h 2021-07-13T22:36:05,324 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ncqet4hx/centrosome_a4fb1b26736447f8835d90328ea6c026/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-um2s3a0h 2021-07-13T22:36:07,487 running bdist_wheel 2021-07-13T22:36:07,492 running build 2021-07-13T22:36:07,492 running build_py 2021-07-13T22:36:07,632 creating build 2021-07-13T22:36:07,633 creating build/lib.linux-armv7l-3.9 2021-07-13T22:36:07,633 creating build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,634 copying centrosome/outline.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,636 copying centrosome/haralick.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,638 copying centrosome/__init__.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,640 copying centrosome/filter.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,643 copying centrosome/princomp.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,645 copying centrosome/radial_power_spectrum.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,647 copying centrosome/propagate.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,649 copying centrosome/index.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,651 copying centrosome/neighmovetrack.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,653 copying centrosome/rankorder.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,655 copying centrosome/zernike.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,657 copying centrosome/mode.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,659 copying centrosome/otsu.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,661 copying centrosome/watershed.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,667 copying centrosome/cpmorphology.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,675 copying centrosome/kirsch.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,677 copying centrosome/bg_compensate.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,679 copying centrosome/smooth.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,681 copying centrosome/threshold.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,685 copying centrosome/fastemd.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,687 copying centrosome/lapjv.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,691 running build_ext 2021-07-13T22:36:07,967 building 'centrosome._propagate' extension 2021-07-13T22:36:07,967 creating build/temp.linux-armv7l-3.9 2021-07-13T22:36:07,967 creating build/temp.linux-armv7l-3.9/centrosome 2021-07-13T22:36:07,968 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_propagate.c -o build/temp.linux-armv7l-3.9/centrosome/_propagate.o 2021-07-13T22:36:08,353 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T22:36:08,354 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T22:36:08,354 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T22:36:08,354 from centrosome/_propagate.c:623: 2021-07-13T22:36:08,354 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T22:36:08,355 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T22:36:08,355 | ^~~~~~~ 2021-07-13T22:36:08,446 centrosome/_propagate.c: In function ‘__pyx_f_10centrosome_4heap_heap_from_numpy2’: 2021-07-13T22:36:08,448 centrosome/_propagate.c:4797:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-13T22:36:08,449 4797 | if (((__pyx_t_4 > __pyx_t_3) != 0)) { 2021-07-13T22:36:08,449 | ^ 2021-07-13T22:36:08,487 centrosome/_propagate.c: In function ‘__pyx_pymod_exec__propagate’: 2021-07-13T22:36:08,490 centrosome/_propagate.c:6301:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] 2021-07-13T22:36:08,490 6301 | import_array(); 2021-07-13T22:36:08,490 | ^~~~~~~~~~~~ 2021-07-13T22:36:13,143 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_propagate.o -o build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so 2021-07-13T22:36:13,284 building 'centrosome._convex_hull' extension 2021-07-13T22:36:13,285 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_convex_hull.cpp -o build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o 2021-07-13T22:36:13,571 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T22:36:13,571 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T22:36:13,571 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T22:36:13,571 from centrosome/_convex_hull.cpp:640: 2021-07-13T22:36:13,572 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T22:36:13,572 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T22:36:13,572 | ^~~~~~~ 2021-07-13T22:36:21,104 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o -o build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so 2021-07-13T22:36:21,286 building 'centrosome._lapjv' extension 2021-07-13T22:36:21,286 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_lapjv.cpp -o build/temp.linux-armv7l-3.9/centrosome/_lapjv.o 2021-07-13T22:36:21,572 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T22:36:21,573 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T22:36:21,573 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T22:36:21,573 from centrosome/_lapjv.cpp:640: 2021-07-13T22:36:21,573 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T22:36:21,573 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T22:36:21,573 | ^~~~~~~ 2021-07-13T22:36:22,902 centrosome/_lapjv.cpp: In function ‘int __pyx_pymod_exec__lapjv(PyObject*)’: 2021-07-13T22:36:22,902 centrosome/_lapjv.cpp:7984:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null] 2021-07-13T22:36:22,902 7984 | import_array(); 2021-07-13T22:36:22,902 | ^~~~~~~~~~~~ 2021-07-13T22:36:25,887 centrosome/_lapjv.cpp: In function ‘PyObject* __pyx_pf_10centrosome_6_lapjv_2augmenting_row_reduction(PyObject*, int, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*)’: 2021-07-13T22:36:25,887 centrosome/_lapjv.cpp:3484:44: warning: ‘__pyx_v_j2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-13T22:36:25,887 3484 | __pyx_v_i1 = (__pyx_v_p_y_base[__pyx_v_j1]); 2021-07-13T22:36:25,888 | ^~~~~~~~~~ 2021-07-13T22:36:25,888 centrosome/_lapjv.cpp:3427:42: warning: ‘__pyx_v_j1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-13T22:36:25,888 3427 | __pyx_v_i1 = (__pyx_v_p_y_base[__pyx_v_j1]); 2021-07-13T22:36:25,888 | ^~~~~~~~~~ 2021-07-13T22:36:27,427 centrosome/_lapjv.cpp: In function ‘PyObject* __pyx_pf_10centrosome_6_lapjv_4augment(PyObject*, int, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*)’: 2021-07-13T22:36:27,428 centrosome/_lapjv.cpp:5713:24: warning: ‘__pyx_v_umin’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-13T22:36:27,428 5713 | __pyx_v_u1 = (((__pyx_v_p_c[__pyx_v_jidx]) - (__pyx_v_p_v_base[__pyx_v_j1])) - __pyx_v_umin); 2021-07-13T22:36:27,428 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:36:30,809 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_lapjv.o -o build/lib.linux-armv7l-3.9/centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so 2021-07-13T22:36:30,997 building 'centrosome._fastemd' extension 2021-07-13T22:36:30,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_fastemd.cpp -o build/temp.linux-armv7l-3.9/centrosome/_fastemd.o 2021-07-13T22:36:31,282 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T22:36:31,283 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T22:36:31,283 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T22:36:31,283 from centrosome/_fastemd.cpp:640: 2021-07-13T22:36:31,283 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T22:36:31,283 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T22:36:31,284 | ^~~~~~~ 2021-07-13T22:36:32,839 centrosome/_fastemd.cpp: In function ‘PyObject* __pyx_pf_10centrosome_8_fastemd_emd_hat_int32(PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*)’: 2021-07-13T22:36:32,839 centrosome/_fastemd.cpp:2765:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:32,839 2765 | __pyx_t_10 = ((__pyx_v_plen < __pyx_v_vf.size()) != 0); 2021-07-13T22:36:32,839 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-13T22:36:32,840 centrosome/_fastemd.cpp:2798:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:32,840 2798 | __pyx_t_10 = ((__pyx_v_qlen < (__pyx_v_vf[0]).size()) != 0); 2021-07-13T22:36:32,840 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T22:36:33,076 In file included from centrosome/include/emd_hat.hpp:59, 2021-07-13T22:36:33,076 from centrosome/include/fastemd_hat.hpp:18, 2021-07-13T22:36:33,076 from centrosome/_fastemd.cpp:655: 2021-07-13T22:36:33,077 centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’: 2021-07-13T22:36:33,077 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,077 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-13T22:36:33,077 centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,077 41 | {for (NODE_T i=0; i::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’: 2021-07-13T22:36:33,078 centrosome/include/fastemd_hat.hpp:39:65: required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,079 centrosome/_fastemd.cpp:2597:349: required from here 2021-07-13T22:36:33,079 centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,080 centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’: 2021-07-13T22:36:33,081 centrosome/include/fastemd_hat.hpp:51:63: required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,081 centrosome/_fastemd.cpp:2649:346: required from here 2021-07-13T22:36:33,081 centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,120 centrosome/include/emd_hat_impl.hpp: In instantiation of ‘void fillFWithZeros(std::vector >&) [with NUM_T = long int]’: 2021-07-13T22:36:33,120 centrosome/include/emd_hat_impl.hpp:33:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-13T22:36:33,120 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,120 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-13T22:36:33,121 centrosome/include/emd_hat_impl.hpp:17:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,121 17 | for (NODE_T i= 0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,121 18 | for (NODE_T j= 0; j::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’: 2021-07-13T22:36:33,191 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-13T22:36:33,191 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-13T22:36:33,192 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,192 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-13T22:36:33,192 centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,192 255 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,192 263 | {for (NODE_T i=0; i::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’: 2021-07-13T22:36:33,228 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-13T22:36:33,228 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’ 2021-07-13T22:36:33,229 centrosome/include/fastemd_hat.hpp:39:65: required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,229 centrosome/_fastemd.cpp:2597:349: required from here 2021-07-13T22:36:33,229 centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,229 255 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,230 263 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,230 296 | for (NODE_T new_name_from=0; new_name_from::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’: 2021-07-13T22:36:33,240 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-13T22:36:33,240 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’ 2021-07-13T22:36:33,240 centrosome/include/fastemd_hat.hpp:51:63: required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,240 centrosome/_fastemd.cpp:2649:346: required from here 2021-07-13T22:36:33,240 centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,241 255 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,241 263 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,242 296 | for (NODE_T new_name_from=0; new_name_from::compute_shortest_path(std::vector&, std::vector&, NODE_T, std::vector > >&, std::vector > >&, const std::vector&, NODE_T&) [with NUM_T = long int; NODE_T = int]’: 2021-07-13T22:36:33,439 centrosome/include/min_cost_flow.hpp:155:17: required from ‘NUM_T min_cost_flow::operator()(std::vector&, const std::vector > >&, std::vector > >&) [with NUM_T = long int]’ 2021-07-13T22:36:33,439 centrosome/include/emd_hat_impl.hpp:291:24: required from ‘NUM_T emd_hat_impl_integral_types::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-13T22:36:33,439 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-13T22:36:33,439 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-13T22:36:33,439 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,439 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-13T22:36:33,440 centrosome/include/min_cost_flow.hpp:321:37: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,440 321 | if ( (_nodes_to_Q[v], int>::value_type’ {aka ‘int’} and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,440 332 | if ( (_nodes_to_Q[v] >&, const std::vector&, const std::vector&, std::vector&, std::vector&) [with NUM_T = long int]’: 2021-07-13T22:36:33,446 centrosome/include/flow_utils.hpp:46:44: required from ‘void transform_flow_to_regular(std::vector >&, const std::vector&, const std::vector&) [with NUM_T = long int]’ 2021-07-13T22:36:33,446 centrosome/include/emd_hat_impl.hpp:322:70: required from ‘NUM_T emd_hat_impl_integral_types::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-13T22:36:33,447 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-13T22:36:33,447 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-13T22:36:33,447 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,447 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-13T22:36:33,447 centrosome/include/flow_utils.hpp:25:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,447 25 | for (NODE_T i= 0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,448 26 | for (NODE_T j= 0; j::heapify(std::vector >&, std::vector&, NODE_T) [with NUM_T = long int; NODE_T = int]’: 2021-07-13T22:36:33,567 centrosome/include/min_cost_flow.hpp:392:9: required from ‘void min_cost_flow::heap_remove_first(std::vector >&, std::vector&) [with NUM_T = long int]’ 2021-07-13T22:36:33,568 centrosome/include/min_cost_flow.hpp:313:13: required from ‘void min_cost_flow::compute_shortest_path(std::vector&, std::vector&, NODE_T, std::vector > >&, std::vector > >&, const std::vector&, NODE_T&) [with NUM_T = long int; NODE_T = int]’ 2021-07-13T22:36:33,568 centrosome/include/min_cost_flow.hpp:155:17: required from ‘NUM_T min_cost_flow::operator()(std::vector&, const std::vector > >&, std::vector > >&) [with NUM_T = long int]’ 2021-07-13T22:36:33,568 centrosome/include/emd_hat_impl.hpp:291:24: required from ‘NUM_T emd_hat_impl_integral_types::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-13T22:36:33,568 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-13T22:36:33,568 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-13T22:36:33,568 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-13T22:36:33,568 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-13T22:36:33,569 centrosome/include/min_cost_flow.hpp:405:20: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,569 405 | if ( (l, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T22:36:33,570 410 | if ( (r build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,526 copying build/lib.linux-armv7l-3.9/centrosome/haralick.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,528 copying build/lib.linux-armv7l-3.9/centrosome/__init__.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,530 copying build/lib.linux-armv7l-3.9/centrosome/filter.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,534 copying build/lib.linux-armv7l-3.9/centrosome/princomp.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,536 copying build/lib.linux-armv7l-3.9/centrosome/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,547 copying build/lib.linux-armv7l-3.9/centrosome/radial_power_spectrum.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,549 copying build/lib.linux-armv7l-3.9/centrosome/propagate.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,551 copying build/lib.linux-armv7l-3.9/centrosome/index.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,553 copying build/lib.linux-armv7l-3.9/centrosome/neighmovetrack.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,556 copying build/lib.linux-armv7l-3.9/centrosome/rankorder.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,558 copying build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,571 copying build/lib.linux-armv7l-3.9/centrosome/zernike.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,573 copying build/lib.linux-armv7l-3.9/centrosome/mode.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,575 copying build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,587 copying build/lib.linux-armv7l-3.9/centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,608 copying build/lib.linux-armv7l-3.9/centrosome/otsu.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,611 copying build/lib.linux-armv7l-3.9/centrosome/watershed.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,613 copying build/lib.linux-armv7l-3.9/centrosome/cpmorphology.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,623 copying build/lib.linux-armv7l-3.9/centrosome/kirsch.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,625 copying build/lib.linux-armv7l-3.9/centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,655 copying build/lib.linux-armv7l-3.9/centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,667 copying build/lib.linux-armv7l-3.9/centrosome/bg_compensate.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,670 copying build/lib.linux-armv7l-3.9/centrosome/smooth.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,672 copying build/lib.linux-armv7l-3.9/centrosome/threshold.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,676 copying build/lib.linux-armv7l-3.9/centrosome/fastemd.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,678 copying build/lib.linux-armv7l-3.9/centrosome/lapjv.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-13T22:37:03,680 running install_egg_info 2021-07-13T22:37:03,708 running egg_info 2021-07-13T22:37:03,709 writing centrosome.egg-info/PKG-INFO 2021-07-13T22:37:03,712 writing dependency_links to centrosome.egg-info/dependency_links.txt 2021-07-13T22:37:03,714 writing requirements to centrosome.egg-info/requires.txt 2021-07-13T22:37:03,715 writing top-level names to centrosome.egg-info/top_level.txt 2021-07-13T22:37:03,726 reading manifest file 'centrosome.egg-info/SOURCES.txt' 2021-07-13T22:37:03,732 reading manifest template 'MANIFEST.in' 2021-07-13T22:37:03,755 adding license file 'LICENSE' 2021-07-13T22:37:03,759 writing manifest file 'centrosome.egg-info/SOURCES.txt' 2021-07-13T22:37:03,761 Copying centrosome.egg-info to build/bdist.linux-armv7l/wheel/centrosome-1.1.5-py3.9.egg-info 2021-07-13T22:37:03,771 running install_scripts 2021-07-13T22:37:03,817 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-13T22:37:03,823 creating build/bdist.linux-armv7l/wheel/centrosome-1.1.5.dist-info/WHEEL 2021-07-13T22:37:03,826 creating '/tmp/pip-wheel-um2s3a0h/centrosome-1.1.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-13T22:37:03,827 adding 'centrosome/__init__.py' 2021-07-13T22:37:03,912 adding 'centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T22:37:04,045 adding 'centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T22:37:04,265 adding 'centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T22:37:04,365 adding 'centrosome/_filter.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T22:37:04,464 adding 'centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T22:37:04,533 adding 'centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T22:37:04,537 adding 'centrosome/bg_compensate.py' 2021-07-13T22:37:04,560 adding 'centrosome/cpmorphology.py' 2021-07-13T22:37:04,563 adding 'centrosome/fastemd.py' 2021-07-13T22:37:04,573 adding 'centrosome/filter.py' 2021-07-13T22:37:04,575 adding 'centrosome/haralick.py' 2021-07-13T22:37:04,577 adding 'centrosome/index.py' 2021-07-13T22:37:04,578 adding 'centrosome/kirsch.py' 2021-07-13T22:37:04,580 adding 'centrosome/lapjv.py' 2021-07-13T22:37:04,581 adding 'centrosome/mode.py' 2021-07-13T22:37:04,583 adding 'centrosome/neighmovetrack.py' 2021-07-13T22:37:04,585 adding 'centrosome/otsu.py' 2021-07-13T22:37:04,586 adding 'centrosome/outline.py' 2021-07-13T22:37:04,587 adding 'centrosome/princomp.py' 2021-07-13T22:37:04,588 adding 'centrosome/propagate.py' 2021-07-13T22:37:04,590 adding 'centrosome/radial_power_spectrum.py' 2021-07-13T22:37:04,591 adding 'centrosome/rankorder.py' 2021-07-13T22:37:04,592 adding 'centrosome/smooth.py' 2021-07-13T22:37:04,597 adding 'centrosome/threshold.py' 2021-07-13T22:37:04,599 adding 'centrosome/watershed.py' 2021-07-13T22:37:04,600 adding 'centrosome/zernike.py' 2021-07-13T22:37:04,603 adding 'centrosome-1.1.5.dist-info/LICENSE' 2021-07-13T22:37:04,604 adding 'centrosome-1.1.5.dist-info/METADATA' 2021-07-13T22:37:04,605 adding 'centrosome-1.1.5.dist-info/WHEEL' 2021-07-13T22:37:04,605 adding 'centrosome-1.1.5.dist-info/top_level.txt' 2021-07-13T22:37:04,606 adding 'centrosome-1.1.5.dist-info/RECORD' 2021-07-13T22:37:04,631 removing build/bdist.linux-armv7l/wheel 2021-07-13T22:37:04,794 Building wheel for centrosome (setup.py): finished with status 'done' 2021-07-13T22:37:04,813 Created wheel for centrosome: filename=centrosome-1.1.5-cp39-cp39-linux_armv7l.whl size=1312167 sha256=d7af2d5911eaf705f07af318bc16a8a7d66a6c8575dd327d4e88d93aec3e3c26 2021-07-13T22:37:04,814 Stored in directory: /tmp/pip-ephem-wheel-cache-92h_n6hd/wheels/88/d5/28/26c5b64fdfbc90584e0fab31e6317bb3b3fc26ebcf4b625e84 2021-07-13T22:37:04,824 Successfully built centrosome 2021-07-13T22:37:04,876 Removed build tracker: '/tmp/pip-req-tracker-xnz2031t'