2021-07-13T23:27:34,384 Created temporary directory: /tmp/pip-ephem-wheel-cache-7nrk4wnb
2021-07-13T23:27:34,387 Created temporary directory: /tmp/pip-req-tracker-9pyqu22c
2021-07-13T23:27:34,388 Initialized build tracking at /tmp/pip-req-tracker-9pyqu22c
2021-07-13T23:27:34,388 Created build tracker: /tmp/pip-req-tracker-9pyqu22c
2021-07-13T23:27:34,388 Entered build tracker: /tmp/pip-req-tracker-9pyqu22c
2021-07-13T23:27:34,389 Created temporary directory: /tmp/pip-wheel-n0j93epw
2021-07-13T23:27:34,421 1 location(s) to search for versions of mitre:
2021-07-13T23:27:34,421 * https://pypi.org/simple/mitre/
2021-07-13T23:27:34,421 Fetching project page and analyzing links: https://pypi.org/simple/mitre/
2021-07-13T23:27:34,422 Getting page https://pypi.org/simple/mitre/
2021-07-13T23:27:34,423 Found index url https://pypi.org/simple
2021-07-13T23:27:34,616   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/59/f6/233a0adc07eaf97d28545b7f42f8c3bd3a6cd6f98179e644e75257ea869b/mitre-0.9b1-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=6b5a7e496c46a53d5e2b2067f67b1f1d94075b525acea979a32cff11b15542d3 (from https://pypi.org/simple/mitre/)
2021-07-13T23:27:34,616   Found link https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz#sha256=771589e92e4267a4e551dfd104be5d2cc2c6e5d56634bd29fefe937f976ccdaf (from https://pypi.org/simple/mitre/), version: 0.9b1
2021-07-13T23:27:34,617   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/47/14/38f5abf9aabdc12a77be89fbd69618cc833a9e9d4c2c81ba7b3d66f2babd/mitre-0.9b2-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=c58e141cf4c9e2f2755eaa54eb80a7fe8cceef243d154cb741688ac8d23c6116 (from https://pypi.org/simple/mitre/)
2021-07-13T23:27:34,618   Found link https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz#sha256=0bbb16e6d42ffb37620fd31ae547cf776d9e92aba926ff1c46eef6cca76f0fe1 (from https://pypi.org/simple/mitre/), version: 0.9b2
2021-07-13T23:27:34,618   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/07/a1/111c00ce0ab5508eb79f5375ca0fee326ce76b5800a53995018d7b80fb47/mitre-0.9b3-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3813a9da8f362e7918261410bd345fc19d2c0a3627b40fdb4b2d8ef2724e5579 (from https://pypi.org/simple/mitre/)
2021-07-13T23:27:34,619   Found link https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz#sha256=cbc0aaea05c289e3a56abf0c45506f663b7616e0138d28cd0725a1046ab61828 (from https://pypi.org/simple/mitre/), version: 0.9b3
2021-07-13T23:27:34,619   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6a/24/8151e74639efbec4abc53d046b077bc30a8030f0a4ed05f341896d08310f/mitre-0.9b4-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=b2ec818db040005ea1253503e2c6f9597d4cbc0538c45da6c73ef5d074ee562c (from https://pypi.org/simple/mitre/)
2021-07-13T23:27:34,620   Found link https://files.pythonhosted.org/packages/5a/b9/ef6ba6d02cb43873415935aac15ae0af557bc19c68670a4df756a2d19cc4/mitre-0.9b4.tar.gz#sha256=b1885e1c527afaf8f0b9d3bf8b92b84343db20919b61271665acea7f162c9871 (from https://pypi.org/simple/mitre/), version: 0.9b4
2021-07-13T23:27:34,620   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/68/39/26cccdca887c89b2e366625711f0447880aa99e424e35fa0767f5f5e6005/mitre-0.9b5-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3e6023c4a9973a6d88196756aa0ebc54635513d0def0fdb91dd7a525b61eaf65 (from https://pypi.org/simple/mitre/)
2021-07-13T23:27:34,621   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/15/1344c018f16ea96f6563f2f783d516efb34ddc67d8b50e95ca55da75e7ce/mitre-0.9b5-py2.7-linux-x86_64.egg#sha256=71140d6aeedd1cea5694511d6b866689d44a247801853aa33a33d5be8f45bd0c (from https://pypi.org/simple/mitre/)
2021-07-13T23:27:34,621   Found link https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz#sha256=80cc8624b88e26c34e2ff8023ee0eeb569fe731eb4df28354387dd8f46aca155 (from https://pypi.org/simple/mitre/), version: 0.9b5
2021-07-13T23:27:34,621   Found link https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz#sha256=358fbd057f95068b2f6372af424a71fee16d6a5eb780201de6958bc2ec201dcf (from https://pypi.org/simple/mitre/), version: 1.0b1
2021-07-13T23:27:34,622 Skipping link: not a file: https://pypi.org/simple/mitre/
2021-07-13T23:27:34,624 Given no hashes to check 1 links for project 'mitre': discarding no candidates
2021-07-13T23:27:34,644 Collecting mitre==1.0b1
2021-07-13T23:27:34,646   Created temporary directory: /tmp/pip-unpack-9ac2dj8c
2021-07-13T23:27:35,089   Downloading mitre-1.0b1.tar.gz (9.6 MB)
2021-07-13T23:27:39,686   Added mitre==1.0b1 from https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz#sha256=358fbd057f95068b2f6372af424a71fee16d6a5eb780201de6958bc2ec201dcf to build tracker '/tmp/pip-req-tracker-9pyqu22c'
2021-07-13T23:27:39,687     Running setup.py (path:/tmp/pip-wheel-n0j93epw/mitre_33e5d8853337493998187d56028818d5/setup.py) egg_info for package mitre
2021-07-13T23:27:39,688     Created temporary directory: /tmp/pip-pip-egg-info-lzryvblz
2021-07-13T23:27:39,689     Running command python setup.py egg_info
2021-07-13T23:27:40,955     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-13T23:27:40,956       warnings.warn(
2021-07-13T23:27:41,093     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '1.0beta1' to '1.0b1'
2021-07-13T23:27:41,093       warnings.warn(tmpl.format(**locals()))
2021-07-13T23:27:41,129     running egg_info
2021-07-13T23:27:41,132     creating /tmp/pip-pip-egg-info-lzryvblz/mitre.egg-info
2021-07-13T23:27:41,133     writing /tmp/pip-pip-egg-info-lzryvblz/mitre.egg-info/PKG-INFO
2021-07-13T23:27:41,135     writing dependency_links to /tmp/pip-pip-egg-info-lzryvblz/mitre.egg-info/dependency_links.txt
2021-07-13T23:27:41,137     writing entry points to /tmp/pip-pip-egg-info-lzryvblz/mitre.egg-info/entry_points.txt
2021-07-13T23:27:41,139     writing requirements to /tmp/pip-pip-egg-info-lzryvblz/mitre.egg-info/requires.txt
2021-07-13T23:27:41,140     writing top-level names to /tmp/pip-pip-egg-info-lzryvblz/mitre.egg-info/top_level.txt
2021-07-13T23:27:41,141     writing manifest file '/tmp/pip-pip-egg-info-lzryvblz/mitre.egg-info/SOURCES.txt'
2021-07-13T23:27:41,339     reading manifest file '/tmp/pip-pip-egg-info-lzryvblz/mitre.egg-info/SOURCES.txt'
2021-07-13T23:27:41,341     reading manifest template 'MANIFEST.in'
2021-07-13T23:27:41,378     adding license file 'LICENSE.txt'
2021-07-13T23:27:41,385     writing manifest file '/tmp/pip-pip-egg-info-lzryvblz/mitre.egg-info/SOURCES.txt'
2021-07-13T23:27:41,483   Source in /tmp/pip-wheel-n0j93epw/mitre_33e5d8853337493998187d56028818d5 has version 1.0b1, which satisfies requirement mitre==1.0b1 from https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz#sha256=358fbd057f95068b2f6372af424a71fee16d6a5eb780201de6958bc2ec201dcf
2021-07-13T23:27:41,484   Removed mitre==1.0b1 from https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz#sha256=358fbd057f95068b2f6372af424a71fee16d6a5eb780201de6958bc2ec201dcf from build tracker '/tmp/pip-req-tracker-9pyqu22c'
2021-07-13T23:27:41,490 Created temporary directory: /tmp/pip-unpack-fwd5j3w0
2021-07-13T23:27:41,491 Building wheels for collected packages: mitre
2021-07-13T23:27:41,496   Created temporary directory: /tmp/pip-wheel-x_mvxqh6
2021-07-13T23:27:41,497   Building wheel for mitre (setup.py): started
2021-07-13T23:27:41,497   Destination directory: /tmp/pip-wheel-x_mvxqh6
2021-07-13T23:27:41,497   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-n0j93epw/mitre_33e5d8853337493998187d56028818d5/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-n0j93epw/mitre_33e5d8853337493998187d56028818d5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-x_mvxqh6
2021-07-13T23:27:42,753   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-13T23:27:42,754     warnings.warn(
2021-07-13T23:27:42,888   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '1.0beta1' to '1.0b1'
2021-07-13T23:27:42,888     warnings.warn(tmpl.format(**locals()))
2021-07-13T23:27:42,937   running bdist_wheel
2021-07-13T23:27:42,943   running build
2021-07-13T23:27:42,943   running build_py
2021-07-13T23:27:43,092   creating build
2021-07-13T23:27:43,092   creating build/lib.linux-armv7l-3.9
2021-07-13T23:27:43,093   creating build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,094   copying mitre/command_line.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,096   copying mitre/mvnpdf_cholesky.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,098   copying mitre/key_comparison.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,099   copying mitre/mcmc_diagnostics.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,101   copying mitre/__init__.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,103   copying mitre/rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,107   copying mitre/posterior.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,110   copying mitre/prior_by_primitive.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,113   copying mitre/logit_rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,117   copying mitre/logit_rule_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,119   copying mitre/simulated_data_with_debug.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,122   copying mitre/logit_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,125   copying mitre/visualization.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,127   copying mitre/test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,129   copying mitre/simulated_data.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,132   copying mitre/subsample.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,135   copying mitre/main.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,139   copying mitre/lambda_quick_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,142   creating build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-13T23:27:43,143   copying mitre/data_processing/synthetic_data.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-13T23:27:43,145   copying mitre/data_processing/__init__.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-13T23:27:43,147   copying mitre/data_processing/filtering.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-13T23:27:43,149   copying mitre/data_processing/data_processing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-13T23:27:43,151   copying mitre/data_processing/sequencing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-13T23:27:43,153   copying mitre/data_processing/crossvalidation.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-13T23:27:43,155   copying mitre/data_processing/transforms.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-13T23:27:43,158   creating build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-13T23:27:43,159   copying mitre/load_data/taxonomy_annotation.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-13T23:27:43,161   copying mitre/load_data/__init__.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-13T23:27:43,163   copying mitre/load_data/basic.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-13T23:27:43,165   copying mitre/load_data/distance_based.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-13T23:27:43,167   copying mitre/load_data/pplacer.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-13T23:27:43,171   creating build/lib.linux-armv7l-3.9/mitre/trees
2021-07-13T23:27:43,171   copying mitre/trees/utilities.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-13T23:27:43,173   copying mitre/trees/__init__.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-13T23:27:43,175   copying mitre/trees/simulators.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-13T23:27:43,177   copying mitre/trees/priors.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-13T23:27:43,179   creating build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-13T23:27:43,180   copying mitre/comparison_methods/__init__.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-13T23:27:43,182   copying mitre/comparison_methods/sklearn_wrappers.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-13T23:27:43,184   running egg_info
2021-07-13T23:27:43,198   writing mitre.egg-info/PKG-INFO
2021-07-13T23:27:43,199   writing dependency_links to mitre.egg-info/dependency_links.txt
2021-07-13T23:27:43,201   writing entry points to mitre.egg-info/entry_points.txt
2021-07-13T23:27:43,202   writing requirements to mitre.egg-info/requires.txt
2021-07-13T23:27:43,203   writing top-level names to mitre.egg-info/top_level.txt
2021-07-13T23:27:43,241   reading manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-13T23:27:43,246   reading manifest template 'MANIFEST.in'
2021-07-13T23:27:43,276   adding license file 'LICENSE.txt'
2021-07-13T23:27:43,284   writing manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-13T23:27:43,293   copying mitre/efficient_likelihoods.c -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,304   copying mitre/efficient_likelihoods.pyx -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,307   copying mitre/quick_test.cfg -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,309   copying mitre/template.html -> build/lib.linux-armv7l-3.9/mitre
2021-07-13T23:27:43,313   creating build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-13T23:27:43,314   copying mitre/example_data/CITATIONS.txt -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-13T23:27:43,316   copying mitre/example_data/example_settings.cfg -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-13T23:27:43,319   creating build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,320   copying mitre/example_data/bokulich/NOTE -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,322   copying mitre/example_data/bokulich/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,554   copying mitre/example_data/bokulich/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,584   copying mitre/example_data/bokulich/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,646   copying mitre/example_data/bokulich/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,650   copying mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,654   copying mitre/example_data/bokulich/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,665   copying mitre/example_data/bokulich/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,691   copying mitre/example_data/bokulich/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,694   copying mitre/example_data/bokulich/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-13T23:27:43,745   creating build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:43,746   copying mitre/example_data/david/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:43,918   copying mitre/example_data/david/david_long.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:43,920   copying mitre/example_data/david/mothur_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:43,953   copying mitre/example_data/david/placements.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:44,178   copying mitre/example_data/david/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:44,181   copying mitre/example_data/david/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:44,190   copying mitre/example_data/david/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:44,250   copying mitre/example_data/david/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:44,252   copying mitre/example_data/david/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-13T23:27:44,290   creating build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,290   copying mitre/example_data/digiulio/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,419   copying mitre/example_data/digiulio/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,440   copying mitre/example_data/digiulio/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,480   copying mitre/example_data/digiulio/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,485   copying mitre/example_data/digiulio/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,496   copying mitre/example_data/digiulio/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,516   copying mitre/example_data/digiulio/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,519   copying mitre/example_data/digiulio/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,559   copying mitre/example_data/digiulio/test.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-13T23:27:44,561   creating build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:44,562   copying mitre/example_data/karelia/README -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:44,565   copying mitre/example_data/karelia/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:44,886   copying mitre/example_data/karelia/add_any_allergy_variables.py -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:44,888   copying mitre/example_data/karelia/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:44,921   copying mitre/example_data/karelia/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:44,983   copying mitre/example_data/karelia/sample_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:44,987   copying mitre/example_data/karelia/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:44,990   copying mitre/example_data/karelia/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:45,001   copying mitre/example_data/karelia/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:45,030   copying mitre/example_data/karelia/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:45,033   copying mitre/example_data/karelia/subject_data_augmented.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:45,036   copying mitre/example_data/karelia/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-13T23:27:45,076   creating build/lib.linux-armv7l-3.9/mitre/example_data/t1d
2021-07-13T23:27:45,077   copying mitre/example_data/t1d/diabimmune_t1d_metaphlan_table.txt -> build/lib.linux-armv7l-3.9/mitre/example_data/t1d
2021-07-13T23:27:45,085   copying mitre/example_data/t1d/diabimmune_t1d_wgs_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/t1d
2021-07-13T23:27:45,089   copying mitre/example_data/t1d/process_t1d_wgs.py -> build/lib.linux-armv7l-3.9/mitre/example_data/t1d
2021-07-13T23:27:45,091   copying mitre/example_data/t1d/t1d_sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/t1d
2021-07-13T23:27:45,093   copying mitre/example_data/t1d/t1d_wgs_subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/t1d
2021-07-13T23:27:45,099   running build_ext
2021-07-13T23:27:45,431   building 'efficient_likelihoods' extension
2021-07-13T23:27:45,431   creating build/temp.linux-armv7l-3.9
2021-07-13T23:27:45,431   creating build/temp.linux-armv7l-3.9/mitre
2021-07-13T23:27:45,432   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c mitre/efficient_likelihoods.c -o build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o
2021-07-13T23:27:45,844   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T23:27:45,845                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T23:27:45,845                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T23:27:45,845                    from mitre/efficient_likelihoods.c:274:
2021-07-13T23:27:45,845   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T23:27:45,846      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T23:27:45,846         |  ^~~~~~~
2021-07-13T23:27:45,980   mitre/efficient_likelihoods.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-13T23:27:45,983   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:45,984    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:45,984         |                     ^
2021-07-13T23:27:45,984   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:45,984                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:45,984                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:45,984   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-13T23:27:45,984     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-13T23:27:45,984         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:45,987   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:45,988    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:45,988         |                     ^
2021-07-13T23:27:45,988   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:45,989                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:45,989                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:45,989   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-13T23:27:45,989     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-13T23:27:45,989         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:45,991   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:45,991    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:45,991         |                     ^
2021-07-13T23:27:45,992   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:45,992                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:45,992                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:45,992   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-13T23:27:45,992     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-13T23:27:45,992         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:45,995   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:45,995    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:45,995         |                     ^
2021-07-13T23:27:45,995   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:45,995                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:45,995                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:45,995   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-13T23:27:45,996     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-13T23:27:45,996         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:45,998   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:45,998    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:45,999         |                     ^
2021-07-13T23:27:45,999   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:45,999                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:45,999                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:45,999   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-13T23:27:45,999     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-13T23:27:45,999         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:46,002   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:46,002    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:46,002         |                     ^
2021-07-13T23:27:46,002   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:46,002                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:46,002                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:46,003   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-13T23:27:46,003     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-13T23:27:46,003         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:46,006   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:46,007    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:46,007         |                         ^
2021-07-13T23:27:46,007   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:46,007                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:46,007                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:46,007   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-13T23:27:46,007     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-13T23:27:46,007         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:46,010   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:46,010    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:46,010         |                         ^
2021-07-13T23:27:46,010   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:46,011                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:46,011                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:46,011   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-13T23:27:46,011     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-13T23:27:46,011         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:46,013   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:46,014    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:46,014         |                         ^
2021-07-13T23:27:46,014   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:46,014                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:46,014                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:46,014   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-13T23:27:46,014     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-13T23:27:46,015         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:46,017   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:46,017    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:46,017         |                         ^
2021-07-13T23:27:46,018   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:46,018                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:46,018                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:46,018   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-13T23:27:46,018     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-13T23:27:46,018         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:46,021   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:46,021    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:46,021         |                         ^
2021-07-13T23:27:46,021   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:46,021                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:46,021                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:46,022   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-13T23:27:46,022     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-13T23:27:46,022         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:46,024   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-13T23:27:46,024    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-13T23:27:46,025         |                         ^
2021-07-13T23:27:46,025   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-13T23:27:46,025                    from /usr/include/python3.9/Python.h:97,
2021-07-13T23:27:46,025                    from mitre/efficient_likelihoods.c:12:
2021-07-13T23:27:46,025   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-13T23:27:46,025     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-13T23:27:46,025         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T23:27:46,220   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2021-07-13T23:27:46,220                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T23:27:46,220                    from mitre/efficient_likelihoods.c:274:
2021-07-13T23:27:46,221   At top level:
2021-07-13T23:27:46,221   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2021-07-13T23:27:46,221    1464 | _import_array(void)
2021-07-13T23:27:46,221         | ^~~~~~~~~~~~~
2021-07-13T23:27:52,296   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o -o build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so
2021-07-13T23:27:52,447   installing to build/bdist.linux-armv7l/wheel
2021-07-13T23:27:52,447   running install
2021-07-13T23:27:52,449   running install_lib
2021-07-13T23:27:52,453   creating build/bdist.linux-armv7l
2021-07-13T23:27:52,454   creating build/bdist.linux-armv7l/wheel
2021-07-13T23:27:52,456   creating build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,457   copying build/lib.linux-armv7l-3.9/mitre/command_line.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,460   copying build/lib.linux-armv7l-3.9/mitre/mvnpdf_cholesky.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,462   copying build/lib.linux-armv7l-3.9/mitre/template.html -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,466   copying build/lib.linux-armv7l-3.9/mitre/key_comparison.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,468   creating build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-13T23:27:52,469   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-13T23:27:52,471   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/sklearn_wrappers.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-13T23:27:52,473   copying build/lib.linux-armv7l-3.9/mitre/mcmc_diagnostics.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,475   copying build/lib.linux-armv7l-3.9/mitre/__init__.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,477   copying build/lib.linux-armv7l-3.9/mitre/rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,481   creating build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-13T23:27:52,482   copying build/lib.linux-armv7l-3.9/mitre/trees/utilities.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-13T23:27:52,484   copying build/lib.linux-armv7l-3.9/mitre/trees/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-13T23:27:52,486   copying build/lib.linux-armv7l-3.9/mitre/trees/simulators.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-13T23:27:52,488   copying build/lib.linux-armv7l-3.9/mitre/trees/priors.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-13T23:27:52,490   copying build/lib.linux-armv7l-3.9/mitre/posterior.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,493   copying build/lib.linux-armv7l-3.9/mitre/prior_by_primitive.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,496   copying build/lib.linux-armv7l-3.9/mitre/logit_rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,500   creating build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-13T23:27:52,501   copying build/lib.linux-armv7l-3.9/mitre/load_data/taxonomy_annotation.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-13T23:27:52,503   copying build/lib.linux-armv7l-3.9/mitre/load_data/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-13T23:27:52,505   copying build/lib.linux-armv7l-3.9/mitre/load_data/basic.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-13T23:27:52,508   copying build/lib.linux-armv7l-3.9/mitre/load_data/distance_based.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-13T23:27:52,510   copying build/lib.linux-armv7l-3.9/mitre/load_data/pplacer.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-13T23:27:52,513   copying build/lib.linux-armv7l-3.9/mitre/logit_rule_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,515   copying build/lib.linux-armv7l-3.9/mitre/simulated_data_with_debug.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,518   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.pyx -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,520   copying build/lib.linux-armv7l-3.9/mitre/logit_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,522   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.c -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,535   copying build/lib.linux-armv7l-3.9/mitre/visualization.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,538   copying build/lib.linux-armv7l-3.9/mitre/test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,541   creating build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-13T23:27:52,541   copying build/lib.linux-armv7l-3.9/mitre/data_processing/synthetic_data.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-13T23:27:52,544   copying build/lib.linux-armv7l-3.9/mitre/data_processing/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-13T23:27:52,546   copying build/lib.linux-armv7l-3.9/mitre/data_processing/filtering.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-13T23:27:52,549   copying build/lib.linux-armv7l-3.9/mitre/data_processing/data_processing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-13T23:27:52,551   copying build/lib.linux-armv7l-3.9/mitre/data_processing/sequencing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-13T23:27:52,553   copying build/lib.linux-armv7l-3.9/mitre/data_processing/crossvalidation.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-13T23:27:52,555   copying build/lib.linux-armv7l-3.9/mitre/data_processing/transforms.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-13T23:27:52,557   copying build/lib.linux-armv7l-3.9/mitre/simulated_data.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,561   copying build/lib.linux-armv7l-3.9/mitre/subsample.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,564   copying build/lib.linux-armv7l-3.9/mitre/main.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:52,569   creating build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-13T23:27:52,570   creating build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,571   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/test.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,573   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,615   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,728   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,756   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,767   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,809   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,811   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,813   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-13T23:27:52,835   creating build/bdist.linux-armv7l/wheel/mitre/example_data/t1d
2021-07-13T23:27:52,836   copying build/lib.linux-armv7l-3.9/mitre/example_data/t1d/t1d_sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/t1d
2021-07-13T23:27:52,838   copying build/lib.linux-armv7l-3.9/mitre/example_data/t1d/diabimmune_t1d_wgs_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/t1d
2021-07-13T23:27:52,841   copying build/lib.linux-armv7l-3.9/mitre/example_data/t1d/diabimmune_t1d_metaphlan_table.txt -> build/bdist.linux-armv7l/wheel/mitre/example_data/t1d
2021-07-13T23:27:52,849   copying build/lib.linux-armv7l-3.9/mitre/example_data/t1d/t1d_wgs_subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/t1d
2021-07-13T23:27:52,851   copying build/lib.linux-armv7l-3.9/mitre/example_data/t1d/process_t1d_wgs.py -> build/bdist.linux-armv7l/wheel/mitre/example_data/t1d
2021-07-13T23:27:52,853   creating build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:52,854   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:52,932   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/NOTE -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:52,935   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:52,939   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:53,188   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:53,220   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:53,231   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:53,272   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:53,275   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:53,277   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-13T23:27:53,299   copying build/lib.linux-armv7l-3.9/mitre/example_data/example_settings.cfg -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-13T23:27:53,302   copying build/lib.linux-armv7l-3.9/mitre/example_data/CITATIONS.txt -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-13T23:27:53,305   creating build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,306   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,310   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/add_any_allergy_variables.py -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,313   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/README -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,316   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,379   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,733   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,768   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,778   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,812   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,815   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,818   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,856   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data_augmented.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-13T23:27:53,860   creating build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:53,860   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/mothur_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:53,906   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:54,093   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/placements.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:54,320   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:54,330   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:54,389   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/david_long.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:54,390   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:54,392   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:54,394   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-13T23:27:54,463   copying build/lib.linux-armv7l-3.9/mitre/quick_test.cfg -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:54,465   copying build/lib.linux-armv7l-3.9/mitre/lambda_quick_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-13T23:27:54,467   copying build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-13T23:27:54,477   running install_egg_info
2021-07-13T23:27:54,486   Copying mitre.egg-info to build/bdist.linux-armv7l/wheel/mitre-1.0b1-py3.9.egg-info
2021-07-13T23:27:54,511   running install_scripts
2021-07-13T23:27:54,617   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-13T23:27:54,625   creating build/bdist.linux-armv7l/wheel/mitre-1.0b1.dist-info/WHEEL
2021-07-13T23:27:54,629   creating '/tmp/pip-wheel-x_mvxqh6/mitre-1.0b1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T23:27:54,710   adding 'efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T23:27:54,716   adding 'mitre/__init__.py'
2021-07-13T23:27:54,718   adding 'mitre/command_line.py'
2021-07-13T23:27:54,753   adding 'mitre/efficient_likelihoods.c'
2021-07-13T23:27:54,758   adding 'mitre/efficient_likelihoods.pyx'
2021-07-13T23:27:54,760   adding 'mitre/key_comparison.py'
2021-07-13T23:27:54,762   adding 'mitre/lambda_quick_test.py'
2021-07-13T23:27:54,764   adding 'mitre/logit_rule_test.py'
2021-07-13T23:27:54,773   adding 'mitre/logit_rules.py'
2021-07-13T23:27:54,776   adding 'mitre/logit_test.py'
2021-07-13T23:27:54,787   adding 'mitre/main.py'
2021-07-13T23:27:54,790   adding 'mitre/mcmc_diagnostics.py'
2021-07-13T23:27:54,792   adding 'mitre/mvnpdf_cholesky.py'
2021-07-13T23:27:54,800   adding 'mitre/posterior.py'
2021-07-13T23:27:54,802   adding 'mitre/prior_by_primitive.py'
2021-07-13T23:27:54,804   adding 'mitre/quick_test.cfg'
2021-07-13T23:27:54,814   adding 'mitre/rules.py'
2021-07-13T23:27:54,819   adding 'mitre/simulated_data.py'
2021-07-13T23:27:54,824   adding 'mitre/simulated_data_with_debug.py'
2021-07-13T23:27:54,827   adding 'mitre/subsample.py'
2021-07-13T23:27:54,833   adding 'mitre/template.html'
2021-07-13T23:27:54,836   adding 'mitre/test.py'
2021-07-13T23:27:54,838   adding 'mitre/visualization.py'
2021-07-13T23:27:54,840   adding 'mitre/comparison_methods/__init__.py'
2021-07-13T23:27:54,842   adding 'mitre/comparison_methods/sklearn_wrappers.py'
2021-07-13T23:27:54,844   adding 'mitre/data_processing/__init__.py'
2021-07-13T23:27:54,846   adding 'mitre/data_processing/crossvalidation.py'
2021-07-13T23:27:54,847   adding 'mitre/data_processing/data_processing.py'
2021-07-13T23:27:54,850   adding 'mitre/data_processing/filtering.py'
2021-07-13T23:27:54,852   adding 'mitre/data_processing/sequencing.py'
2021-07-13T23:27:54,854   adding 'mitre/data_processing/synthetic_data.py'
2021-07-13T23:27:54,856   adding 'mitre/data_processing/transforms.py'
2021-07-13T23:27:54,859   adding 'mitre/example_data/CITATIONS.txt'
2021-07-13T23:27:54,860   adding 'mitre/example_data/example_settings.cfg'
2021-07-13T23:27:54,863   adding 'mitre/example_data/bokulich/NOTE'
2021-07-13T23:27:55,355   adding 'mitre/example_data/bokulich/abundance.csv'
2021-07-13T23:27:55,663   adding 'mitre/example_data/bokulich/dada2_placements.csv'
2021-07-13T23:27:56,232   adding 'mitre/example_data/bokulich/placement.jplace'
2021-07-13T23:27:56,262   adding 'mitre/example_data/bokulich/sample_metadata.csv'
2021-07-13T23:27:56,266   adding 'mitre/example_data/bokulich/sample_metadata_no_repeats.csv'
2021-07-13T23:27:56,317   adding 'mitre/example_data/bokulich/seq_info.csv'
2021-07-13T23:27:56,505   adding 'mitre/example_data/bokulich/sequence_key.fa'
2021-07-13T23:27:56,513   adding 'mitre/example_data/bokulich/subject_data.csv'
2021-07-13T23:27:56,647   adding 'mitre/example_data/bokulich/taxaTable.csv'
2021-07-13T23:27:57,063   adding 'mitre/example_data/david/abundance.csv'
2021-07-13T23:27:57,132   adding 'mitre/example_data/david/david_long.cfg.lsf'
2021-07-13T23:27:57,200   adding 'mitre/example_data/david/mothur_placements.csv'
2021-07-13T23:27:58,896   adding 'mitre/example_data/david/placements.jplace'
2021-07-13T23:27:58,989   adding 'mitre/example_data/david/sample_metadata.csv'
2021-07-13T23:27:59,040   adding 'mitre/example_data/david/seq_info.csv'
2021-07-13T23:27:59,412   adding 'mitre/example_data/david/sequence_key.fa'
2021-07-13T23:27:59,439   adding 'mitre/example_data/david/subject_data.csv'
2021-07-13T23:27:59,573   adding 'mitre/example_data/david/taxaTable.csv'
2021-07-13T23:27:59,905   adding 'mitre/example_data/digiulio/abundance.csv'
2021-07-13T23:28:00,109   adding 'mitre/example_data/digiulio/dada2_placements.csv'
2021-07-13T23:28:00,421   adding 'mitre/example_data/digiulio/placement.jplace'
2021-07-13T23:28:00,438   adding 'mitre/example_data/digiulio/sample_metadata.csv'
2021-07-13T23:28:00,489   adding 'mitre/example_data/digiulio/seq_info.csv'
2021-07-13T23:28:00,638   adding 'mitre/example_data/digiulio/sequence_key.fa'
2021-07-13T23:28:00,646   adding 'mitre/example_data/digiulio/subject_data.csv'
2021-07-13T23:28:00,780   adding 'mitre/example_data/digiulio/taxaTable.csv'
2021-07-13T23:28:00,795   adding 'mitre/example_data/digiulio/test.cfg.lsf'
2021-07-13T23:28:00,797   adding 'mitre/example_data/karelia/README'
2021-07-13T23:28:01,486   adding 'mitre/example_data/karelia/abundance.csv'
2021-07-13T23:28:01,630   adding 'mitre/example_data/karelia/add_any_allergy_variables.py'
2021-07-13T23:28:01,896   adding 'mitre/example_data/karelia/dada2_placements.csv'
2021-07-13T23:28:02,358   adding 'mitre/example_data/karelia/placement.jplace'
2021-07-13T23:28:02,390   adding 'mitre/example_data/karelia/sample_data.csv'
2021-07-13T23:28:02,399   adding 'mitre/example_data/karelia/sample_metadata.csv'
2021-07-13T23:28:02,451   adding 'mitre/example_data/karelia/seq_info.csv'
2021-07-13T23:28:02,697   adding 'mitre/example_data/karelia/sequence_key.fa'
2021-07-13T23:28:02,709   adding 'mitre/example_data/karelia/subject_data.csv'
2021-07-13T23:28:02,711   adding 'mitre/example_data/karelia/subject_data_augmented.csv'
2021-07-13T23:28:02,845   adding 'mitre/example_data/karelia/taxaTable.csv'
2021-07-13T23:28:02,886   adding 'mitre/example_data/t1d/diabimmune_t1d_metaphlan_table.txt'
2021-07-13T23:28:02,892   adding 'mitre/example_data/t1d/diabimmune_t1d_wgs_metadata.csv'
2021-07-13T23:28:02,894   adding 'mitre/example_data/t1d/process_t1d_wgs.py'
2021-07-13T23:28:02,896   adding 'mitre/example_data/t1d/t1d_sample_metadata.csv'
2021-07-13T23:28:02,897   adding 'mitre/example_data/t1d/t1d_wgs_subject_data.csv'
2021-07-13T23:28:02,899   adding 'mitre/load_data/__init__.py'
2021-07-13T23:28:02,902   adding 'mitre/load_data/basic.py'
2021-07-13T23:28:02,904   adding 'mitre/load_data/distance_based.py'
2021-07-13T23:28:02,909   adding 'mitre/load_data/pplacer.py'
2021-07-13T23:28:02,911   adding 'mitre/load_data/taxonomy_annotation.py'
2021-07-13T23:28:02,913   adding 'mitre/trees/__init__.py'
2021-07-13T23:28:02,915   adding 'mitre/trees/priors.py'
2021-07-13T23:28:02,917   adding 'mitre/trees/simulators.py'
2021-07-13T23:28:02,919   adding 'mitre/trees/utilities.py'
2021-07-13T23:28:02,927   adding 'mitre-1.0b1.dist-info/LICENSE.txt'
2021-07-13T23:28:02,928   adding 'mitre-1.0b1.dist-info/METADATA'
2021-07-13T23:28:02,930   adding 'mitre-1.0b1.dist-info/WHEEL'
2021-07-13T23:28:02,931   adding 'mitre-1.0b1.dist-info/entry_points.txt'
2021-07-13T23:28:02,933   adding 'mitre-1.0b1.dist-info/top_level.txt'
2021-07-13T23:28:02,935   adding 'mitre-1.0b1.dist-info/RECORD'
2021-07-13T23:28:03,089   removing build/bdist.linux-armv7l/wheel
2021-07-13T23:28:03,316   Building wheel for mitre (setup.py): finished with status 'done'
2021-07-13T23:28:03,441   Created wheel for mitre: filename=mitre-1.0b1-cp39-cp39-linux_armv7l.whl size=9908294 sha256=1a37af90ea65672c4e28cb660625a1a65d99864bc753ffcd68a9575a5bbfde4e
2021-07-13T23:28:03,441   Stored in directory: /tmp/pip-ephem-wheel-cache-7nrk4wnb/wheels/39/78/49/544c33723b8b09374d69ec57cbd4ff4a078fefd5d6f98c8986
2021-07-13T23:28:03,460 Successfully built mitre
2021-07-13T23:28:03,732 Removed build tracker: '/tmp/pip-req-tracker-9pyqu22c'