2021-07-14T01:37:37,020 Created temporary directory: /tmp/pip-ephem-wheel-cache-ce29ownl 2021-07-14T01:37:37,023 Created temporary directory: /tmp/pip-req-tracker-pw_61n3c 2021-07-14T01:37:37,024 Initialized build tracking at /tmp/pip-req-tracker-pw_61n3c 2021-07-14T01:37:37,024 Created build tracker: /tmp/pip-req-tracker-pw_61n3c 2021-07-14T01:37:37,024 Entered build tracker: /tmp/pip-req-tracker-pw_61n3c 2021-07-14T01:37:37,024 Created temporary directory: /tmp/pip-wheel-zjaran3w 2021-07-14T01:37:37,053 1 location(s) to search for versions of msmtools: 2021-07-14T01:37:37,053 * https://pypi.org/simple/msmtools/ 2021-07-14T01:37:37,054 Fetching project page and analyzing links: https://pypi.org/simple/msmtools/ 2021-07-14T01:37:37,054 Getting page https://pypi.org/simple/msmtools/ 2021-07-14T01:37:37,056 Found index url https://pypi.org/simple 2021-07-14T01:37:37,238 Found link https://files.pythonhosted.org/packages/06/eb/7ea49c965c6d6cc5d49cf7619eb365b9f80f92d449fa2d83286d57c23b09/msmtools-1.0.tar.gz#sha256=cd2cfbb47327eb24d4855b7585868fbbc3be14c824a2eaa3fa0c2a7e76310595 (from https://pypi.org/simple/msmtools/), version: 1.0 2021-07-14T01:37:37,238 Found link https://files.pythonhosted.org/packages/c4/ca/50da8c42c7aad77f9d8f5c5cf1aa0f8812c01b78ea07c4719daca73a90fb/msmtools-1.0.1.tar.gz#sha256=b6704dea0bb816e3aca0be871f15199a18964a799854a000135ffe95a13ea0d6 (from https://pypi.org/simple/msmtools/), version: 1.0.1 2021-07-14T01:37:37,239 Found link https://files.pythonhosted.org/packages/f7/e7/8fad6dccdaf5c35379a3d670c5b17546fcf5e9b2c7feec293dec0e9fc935/msmtools-1.0.2.tar.gz#sha256=f5f9cb4a2b10f7d7f2d5b7cf520703011e6d6f7961a858c5a88b82f0ad2c494a (from https://pypi.org/simple/msmtools/), version: 1.0.2 2021-07-14T01:37:37,239 Found link https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 (from https://pypi.org/simple/msmtools/), version: 1.0.3 2021-07-14T01:37:37,239 Found link https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 (from https://pypi.org/simple/msmtools/), version: 1.0.4 2021-07-14T01:37:37,239 Found link https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 (from https://pypi.org/simple/msmtools/), version: 1.1 2021-07-14T01:37:37,240 Found link https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b (from https://pypi.org/simple/msmtools/), version: 1.1.1 2021-07-14T01:37:37,240 Found link https://files.pythonhosted.org/packages/d8/83/2de718bea8c6ffd64287549e1f443695c9c7eae576e4ec8b695748735bcc/msmtools-1.1.2.tar.gz#sha256=1ae40e839dff551575e38bb8c061073a2f1e69279e53ed62f66c88006a1f0a4f (from https://pypi.org/simple/msmtools/), version: 1.1.2 2021-07-14T01:37:37,240 Found link https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b (from https://pypi.org/simple/msmtools/), version: 1.1.3 2021-07-14T01:37:37,240 Found link https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 (from https://pypi.org/simple/msmtools/), version: 1.1.4 2021-07-14T01:37:37,241 Found link https://files.pythonhosted.org/packages/5e/a2/42d30177e9f8b9071a5cf17c6cd0a75b9b245d708fc626b015599308a898/msmtools-1.2.tar.gz#sha256=eb509f9b2bebd5a07896ec563b14df3ebee2b9871730f5ac87e1ab3179c8c6c4 (from https://pypi.org/simple/msmtools/), version: 1.2 2021-07-14T01:37:37,241 Found link https://files.pythonhosted.org/packages/c5/bb/79aa3617eed8eaea3c2639d172929079b680e1904d4e19b50d35612c5db3/msmtools-1.2.1.tar.gz#sha256=7282cec96360372e8440146dfe27848273bc3d83d18806ea56e3986a14d5bdec (from https://pypi.org/simple/msmtools/), version: 1.2.1 2021-07-14T01:37:37,241 Found link https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 (from https://pypi.org/simple/msmtools/), version: 1.2.2 2021-07-14T01:37:37,242 Found link https://files.pythonhosted.org/packages/53/84/416bd9c21c408ef59953804c1b4ec805950adfd89102c43c54685b6f3cdf/msmtools-1.2.3.tar.gz#sha256=3f3c39a4558887575dd2bfdb0711b6d073446cb0b8767eafda16bfe0b92409c9 (from https://pypi.org/simple/msmtools/), version: 1.2.3 2021-07-14T01:37:37,242 Found link https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b (from https://pypi.org/simple/msmtools/), version: 1.2.4 2021-07-14T01:37:37,242 Found link https://files.pythonhosted.org/packages/9e/95/ac5dfa19f13379490dbef764a994c6d564b32de2d68e712042af8ff84d2a/msmtools-1.2.5.tar.gz#sha256=e07b73ad9e4e8ef8aca82e6b5bb55f57f8400a65fb2fd656b521f72237a7310a (from https://pypi.org/simple/msmtools/), version: 1.2.5 2021-07-14T01:37:37,243 Found link https://files.pythonhosted.org/packages/e4/1f/366f5c37c1231f87b6789f904e4e68ae47b4b910119da9ec5905e9fa1387/msmtools-1.2.6.tar.gz#sha256=2bfa6c02fff9ed9433c90d7ddc7860a8e2cf881fc67ec1ea5ef93f34a7e03541 (from https://pypi.org/simple/msmtools/), version: 1.2.6 2021-07-14T01:37:37,243 Skipping link: not a file: https://pypi.org/simple/msmtools/ 2021-07-14T01:37:37,266 Given no hashes to check 1 links for project 'msmtools': discarding no candidates 2021-07-14T01:37:37,285 Collecting msmtools==1.2.4 2021-07-14T01:37:37,286 Created temporary directory: /tmp/pip-unpack-nuyxoahw 2021-07-14T01:37:37,796 Downloading msmtools-1.2.4.tar.gz (901 kB) 2021-07-14T01:37:38,617 Added msmtools==1.2.4 from https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b to build tracker '/tmp/pip-req-tracker-pw_61n3c' 2021-07-14T01:37:38,619 Running setup.py (path:/tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/setup.py) egg_info for package msmtools 2021-07-14T01:37:38,619 Created temporary directory: /tmp/pip-pip-egg-info-79d1ii08 2021-07-14T01:37:38,620 Running command python setup.py egg_info 2021-07-14T01:37:40,189 running egg_info 2021-07-14T01:37:40,191 creating /tmp/pip-pip-egg-info-79d1ii08/msmtools.egg-info 2021-07-14T01:37:40,192 writing /tmp/pip-pip-egg-info-79d1ii08/msmtools.egg-info/PKG-INFO 2021-07-14T01:37:40,195 writing dependency_links to /tmp/pip-pip-egg-info-79d1ii08/msmtools.egg-info/dependency_links.txt 2021-07-14T01:37:40,197 writing requirements to /tmp/pip-pip-egg-info-79d1ii08/msmtools.egg-info/requires.txt 2021-07-14T01:37:41,190 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/msmtools/estimation/dense/mle_trev.pyx 2021-07-14T01:37:41,191 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T01:37:42,617 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-14T01:37:42,618 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T01:37:43,986 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/msmtools/estimation/dense/sampler_rev.pyx 2021-07-14T01:37:43,987 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T01:37:45,669 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/msmtools/estimation/dense/sampler_revpi.pyx 2021-07-14T01:37:45,669 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T01:37:47,497 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/msmtools/estimation/sparse/mle_trev.pyx 2021-07-14T01:37:47,497 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T01:37:48,992 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-14T01:37:48,992 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T01:37:50,385 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/msmtools/estimation/sparse/newton/objective_sparse.pyx 2021-07-14T01:37:50,385 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T01:37:52,420 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/msmtools/util/kahandot_src/kahandot.pyx 2021-07-14T01:37:52,420 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T01:37:53,688 Compiling msmtools/estimation/dense/mle_trev_given_pi.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-14T01:37:53,688 Compiling msmtools/estimation/sparse/mle_trev_given_pi.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-14T01:37:53,688 Compiling msmtools/estimation/dense/mle_trev.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-14T01:37:53,688 Compiling msmtools/estimation/sparse/mle_trev.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-14T01:37:53,689 Compiling msmtools/estimation/sparse/newton/objective_sparse.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-14T01:37:53,689 Compiling msmtools/estimation/dense/sampler_rev.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-14T01:37:53,689 Compiling msmtools/estimation/dense/sampler_revpi.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-14T01:37:53,689 Compiling msmtools/util/kahandot_src/kahandot.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-14T01:37:53,689 [1/8] Cythonizing msmtools/estimation/dense/mle_trev.pyx 2021-07-14T01:37:53,689 [2/8] Cythonizing msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-14T01:37:53,689 [3/8] Cythonizing msmtools/estimation/dense/sampler_rev.pyx 2021-07-14T01:37:53,690 [4/8] Cythonizing msmtools/estimation/dense/sampler_revpi.pyx 2021-07-14T01:37:53,690 [5/8] Cythonizing msmtools/estimation/sparse/mle_trev.pyx 2021-07-14T01:37:53,690 [6/8] Cythonizing msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-14T01:37:53,690 [7/8] Cythonizing msmtools/estimation/sparse/newton/objective_sparse.pyx 2021-07-14T01:37:53,690 [8/8] Cythonizing msmtools/util/kahandot_src/kahandot.pyx 2021-07-14T01:37:53,690 writing top-level names to /tmp/pip-pip-egg-info-79d1ii08/msmtools.egg-info/top_level.txt 2021-07-14T01:37:53,690 writing manifest file '/tmp/pip-pip-egg-info-79d1ii08/msmtools.egg-info/SOURCES.txt' 2021-07-14T01:37:53,782 reading manifest file '/tmp/pip-pip-egg-info-79d1ii08/msmtools.egg-info/SOURCES.txt' 2021-07-14T01:37:53,784 reading manifest template 'MANIFEST.in' 2021-07-14T01:37:54,210 adding license file 'LICENSE.txt' 2021-07-14T01:37:54,223 writing manifest file '/tmp/pip-pip-egg-info-79d1ii08/msmtools.egg-info/SOURCES.txt' 2021-07-14T01:37:54,479 Source in /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f has version 1.2.4, which satisfies requirement msmtools==1.2.4 from https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b 2021-07-14T01:37:54,480 Removed msmtools==1.2.4 from https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b from build tracker '/tmp/pip-req-tracker-pw_61n3c' 2021-07-14T01:37:54,485 Created temporary directory: /tmp/pip-unpack-8vyeae4w 2021-07-14T01:37:54,486 Building wheels for collected packages: msmtools 2021-07-14T01:37:54,490 Created temporary directory: /tmp/pip-wheel-chsx2kty 2021-07-14T01:37:54,491 Building wheel for msmtools (setup.py): started 2021-07-14T01:37:54,491 Destination directory: /tmp/pip-wheel-chsx2kty 2021-07-14T01:37:54,491 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-chsx2kty 2021-07-14T01:37:56,069 running bdist_wheel 2021-07-14T01:37:56,870 running build 2021-07-14T01:37:56,870 running build_py 2021-07-14T01:37:56,876 creating build 2021-07-14T01:37:56,876 creating build/lib.linux-armv7l-3.9 2021-07-14T01:37:56,877 creating build/lib.linux-armv7l-3.9/msmtools 2021-07-14T01:37:56,878 copying msmtools/_version.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-14T01:37:56,880 copying msmtools/__init__.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-14T01:37:56,882 creating build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-14T01:37:56,883 copying msmtools/generation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-14T01:37:56,885 copying msmtools/generation/api.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-14T01:37:56,888 creating build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-14T01:37:56,888 copying msmtools/estimation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-14T01:37:56,890 copying msmtools/estimation/api.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-14T01:37:56,894 creating build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-14T01:37:56,895 copying msmtools/analysis/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-14T01:37:56,897 copying msmtools/analysis/api.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-14T01:37:56,901 creating build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-14T01:37:56,902 copying msmtools/dtraj/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-14T01:37:56,904 copying msmtools/dtraj/api.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-14T01:37:56,908 creating build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-14T01:37:56,909 copying msmtools/flux/reactive_flux.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-14T01:37:56,912 copying msmtools/flux/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-14T01:37:56,914 copying msmtools/flux/api.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-14T01:37:56,917 copying msmtools/flux/reactive_flux_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-14T01:37:56,921 creating build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:56,922 copying msmtools/util/annotators.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:56,925 copying msmtools/util/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:56,927 copying msmtools/util/statistics.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:56,930 copying msmtools/util/types.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:56,933 copying msmtools/util/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:56,935 copying msmtools/util/numeric.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:56,937 copying msmtools/util/exceptions.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:56,939 creating build/lib.linux-armv7l-3.9/msmtools/generation/tests 2021-07-14T01:37:56,940 copying msmtools/generation/tests/test_generation.py -> build/lib.linux-armv7l-3.9/msmtools/generation/tests 2021-07-14T01:37:56,943 copying msmtools/generation/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation/tests 2021-07-14T01:37:56,946 creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,946 copying msmtools/estimation/dense/bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,949 copying msmtools/estimation/dense/ratematrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,952 copying msmtools/estimation/dense/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,954 copying msmtools/estimation/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,956 copying msmtools/estimation/dense/covariance.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,959 copying msmtools/estimation/dense/tmatrix_sampler_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,960 copying msmtools/estimation/dense/covariance_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,963 copying msmtools/estimation/dense/tmatrix_sampler.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,965 copying msmtools/estimation/dense/sampler_nrev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:56,968 creating build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,969 copying msmtools/estimation/tests/test_mle_trev_given_pi.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,971 copying msmtools/estimation/tests/test_transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,974 copying msmtools/estimation/tests/test_effective_count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,977 copying msmtools/estimation/tests/test_prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,979 copying msmtools/estimation/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,980 copying msmtools/estimation/tests/test_bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,982 copying msmtools/estimation/tests/test_connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,985 copying msmtools/estimation/tests/test_tmatrix_sampling.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,987 copying msmtools/estimation/tests/test_ratematrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,989 copying msmtools/estimation/tests/test_mle_trev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,992 copying msmtools/estimation/tests/test_count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,994 copying msmtools/estimation/tests/test_likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-14T01:37:56,997 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:56,998 copying msmtools/estimation/sparse/connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,000 copying msmtools/estimation/sparse/effective_counts.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,003 copying msmtools/estimation/sparse/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,005 copying msmtools/estimation/sparse/likelihood_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,007 copying msmtools/estimation/sparse/prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,009 copying msmtools/estimation/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,011 copying msmtools/estimation/sparse/likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,013 copying msmtools/estimation/sparse/connectivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,015 copying msmtools/estimation/sparse/transition_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,017 copying msmtools/estimation/sparse/count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,019 copying msmtools/estimation/sparse/prior_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,022 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:37:57,023 copying msmtools/estimation/sparse/newton/mle_rev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:37:57,025 copying msmtools/estimation/sparse/newton/objective_dense.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:37:57,028 copying msmtools/estimation/sparse/newton/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:37:57,030 copying msmtools/estimation/sparse/newton/mle_rev_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:37:57,032 copying msmtools/estimation/sparse/newton/linsolve_sparse.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:37:57,034 copying msmtools/estimation/sparse/newton/linsolve.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:37:57,038 creating build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,039 copying msmtools/analysis/dense/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,041 copying msmtools/analysis/dense/sensitivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,044 copying msmtools/analysis/dense/sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,047 copying msmtools/analysis/dense/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,048 copying msmtools/analysis/dense/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,050 copying msmtools/analysis/dense/pcca.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,053 copying msmtools/analysis/dense/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,056 copying msmtools/analysis/dense/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,058 copying msmtools/analysis/dense/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,061 copying msmtools/analysis/dense/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,062 copying msmtools/analysis/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,064 copying msmtools/analysis/dense/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,066 copying msmtools/analysis/dense/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,069 copying msmtools/analysis/dense/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,071 copying msmtools/analysis/dense/correlations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,074 copying msmtools/analysis/dense/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,076 copying msmtools/analysis/dense/correlations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,079 copying msmtools/analysis/dense/pcca_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,083 copying msmtools/analysis/dense/hitting_probability.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,085 copying msmtools/analysis/dense/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,087 copying msmtools/analysis/dense/hitting_probability_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,089 copying msmtools/analysis/dense/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,091 copying msmtools/analysis/dense/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-14T01:37:57,095 creating build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,096 copying msmtools/analysis/tests/test_committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,098 copying msmtools/analysis/tests/test_assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,101 copying msmtools/analysis/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,103 copying msmtools/analysis/tests/test_mfpt.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,105 copying msmtools/analysis/tests/test_sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,108 copying msmtools/analysis/tests/test_fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,110 copying msmtools/analysis/tests/test_decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,114 copying msmtools/analysis/tests/test_expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,117 creating build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,118 copying msmtools/analysis/sparse/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,120 copying msmtools/analysis/sparse/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,123 copying msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,124 copying msmtools/analysis/sparse/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,127 copying msmtools/analysis/sparse/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,130 copying msmtools/analysis/sparse/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,132 copying msmtools/analysis/sparse/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,134 copying msmtools/analysis/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,136 copying msmtools/analysis/sparse/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,139 copying msmtools/analysis/sparse/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,141 copying msmtools/analysis/sparse/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,143 copying msmtools/analysis/sparse/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,145 copying msmtools/analysis/sparse/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,147 copying msmtools/analysis/sparse/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,149 copying msmtools/analysis/sparse/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-14T01:37:57,153 creating build/lib.linux-armv7l-3.9/msmtools/dtraj/tests 2021-07-14T01:37:57,154 copying msmtools/dtraj/tests/test_trajectory.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj/tests 2021-07-14T01:37:57,156 copying msmtools/dtraj/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj/tests 2021-07-14T01:37:57,158 creating build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-14T01:37:57,159 copying msmtools/flux/dense/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-14T01:37:57,162 copying msmtools/flux/dense/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-14T01:37:57,164 copying msmtools/flux/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-14T01:37:57,166 creating build/lib.linux-armv7l-3.9/msmtools/flux/tests 2021-07-14T01:37:57,167 copying msmtools/flux/tests/test_tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/tests 2021-07-14T01:37:57,170 copying msmtools/flux/tests/test_pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/tests 2021-07-14T01:37:57,172 copying msmtools/flux/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/tests 2021-07-14T01:37:57,175 creating build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-14T01:37:57,175 copying msmtools/flux/sparse/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-14T01:37:57,178 copying msmtools/flux/sparse/pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-14T01:37:57,180 copying msmtools/flux/sparse/pathways_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-14T01:37:57,182 copying msmtools/flux/sparse/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-14T01:37:57,184 copying msmtools/flux/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-14T01:37:57,187 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-14T01:37:57,188 copying msmtools/util/matrix/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-14T01:37:57,190 copying msmtools/util/matrix/matrix.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-14T01:37:57,192 copying msmtools/util/matrix/matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-14T01:37:57,195 running egg_info 2021-07-14T01:37:57,206 writing msmtools.egg-info/PKG-INFO 2021-07-14T01:37:57,208 writing dependency_links to msmtools.egg-info/dependency_links.txt 2021-07-14T01:37:57,210 writing requirements to msmtools.egg-info/requires.txt 2021-07-14T01:37:57,211 writing top-level names to msmtools.egg-info/top_level.txt 2021-07-14T01:37:57,269 reading manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-14T01:37:57,277 reading manifest template 'MANIFEST.in' 2021-07-14T01:37:57,672 adding license file 'LICENSE.txt' 2021-07-14T01:37:57,689 writing manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-14T01:37:57,706 copying msmtools/analysis/tests/P_rev_251x251.dat -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-14T01:37:57,742 copying msmtools/util/_statistics.c -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:57,744 copying msmtools/util/_statistics.pyx -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:57,746 copying msmtools/util/sigint_handler.h -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-14T01:37:57,748 creating build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-14T01:37:57,749 copying msmtools/util/kahandot_src/_kahandot.c -> build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-14T01:37:57,751 copying msmtools/util/kahandot_src/_kahandot.h -> build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-14T01:37:57,753 copying msmtools/util/kahandot_src/kahandot.c -> build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-14T01:37:57,762 copying msmtools/util/kahandot_src/kahandot.pyx -> build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-14T01:37:57,765 copying msmtools/estimation/dense/_mle_trev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,767 copying msmtools/estimation/dense/_mle_trev.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,769 copying msmtools/estimation/dense/_mle_trev_given_pi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,772 copying msmtools/estimation/dense/_mle_trev_given_pi.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,774 copying msmtools/estimation/dense/mle_trev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,785 copying msmtools/estimation/dense/mle_trev.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,788 copying msmtools/estimation/dense/mle_trev_given_pi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,797 copying msmtools/estimation/dense/mle_trev_given_pi.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,799 copying msmtools/estimation/dense/sample_rev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,802 copying msmtools/estimation/dense/sample_rev.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,804 copying msmtools/estimation/dense/sample_revpi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,807 copying msmtools/estimation/dense/sample_revpi.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,809 copying msmtools/estimation/dense/sampler_rev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,823 copying msmtools/estimation/dense/sampler_rev.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,826 copying msmtools/estimation/dense/sampler_revpi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,843 copying msmtools/estimation/dense/sampler_revpi.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,845 copying msmtools/estimation/dense/util.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:57,848 creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-14T01:37:57,848 copying msmtools/estimation/dense/rnglib/ranlib.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-14T01:37:57,854 copying msmtools/estimation/dense/rnglib/ranlib.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-14T01:37:57,856 copying msmtools/estimation/dense/rnglib/rnglib.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-14T01:37:57,860 copying msmtools/estimation/dense/rnglib/rnglib.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-14T01:37:57,862 creating build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,863 copying msmtools/estimation/tests/testfiles/C_13_lag.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,865 copying msmtools/estimation/tests/testfiles/C_13_sliding.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,867 copying msmtools/estimation/tests/testfiles/C_1_lag.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,869 copying msmtools/estimation/tests/testfiles/C_1_sliding.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,872 copying msmtools/estimation/tests/testfiles/C_7_lag.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,874 copying msmtools/estimation/tests/testfiles/C_7_sliding.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,876 copying msmtools/estimation/tests/testfiles/dtraj.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,879 copying msmtools/estimation/tests/testfiles/dwell.npz -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,898 copying msmtools/estimation/tests/testfiles/pi.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-14T01:37:57,900 copying msmtools/estimation/sparse/_mle_trev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,902 copying msmtools/estimation/sparse/_mle_trev.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,904 copying msmtools/estimation/sparse/_mle_trev_given_pi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,906 copying msmtools/estimation/sparse/_mle_trev_given_pi.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,908 copying msmtools/estimation/sparse/mle_trev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,920 copying msmtools/estimation/sparse/mle_trev.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,922 copying msmtools/estimation/sparse/mle_trev_given_pi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,935 copying msmtools/estimation/sparse/mle_trev_given_pi.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:37:57,937 copying msmtools/estimation/sparse/newton/objective_sparse.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:37:57,952 copying msmtools/estimation/sparse/newton/objective_sparse.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:37:57,954 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/testfiles 2021-07-14T01:37:57,955 copying msmtools/estimation/sparse/newton/testfiles/C.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/testfiles 2021-07-14T01:37:57,965 creating build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles 2021-07-14T01:37:57,965 copying msmtools/dtraj/tests/testfiles/dtraj.dat -> build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles 2021-07-14T01:37:57,968 copying msmtools/dtraj/tests/testfiles/dtraj.npy -> build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles 2021-07-14T01:37:57,973 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,974 copying msmtools/util/matrix/testfiles/matrix_complex.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,976 copying msmtools/util/matrix/testfiles/matrix_complex.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,978 copying msmtools/util/matrix/testfiles/matrix_float.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,980 copying msmtools/util/matrix/testfiles/matrix_float.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,982 copying msmtools/util/matrix/testfiles/matrix_int.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,984 copying msmtools/util/matrix/testfiles/matrix_int.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,986 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,988 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,990 copying msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,993 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,995 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:57,997 copying msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:58,000 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:58,002 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:58,004 copying msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-14T01:37:58,021 running build_ext 2021-07-14T01:37:58,476 /tmp/pip-wheel-zjaran3w/msmtools_de4783c4d2fa46768ff70f7d8fb4910f/setup.py:200: UserWarning: enabled openmp 2021-07-14T01:37:58,476 warnings.warn('enabled openmp') 2021-07-14T01:37:58,477 building 'msmtools.estimation.dense.mle_trev_given_pi' extension 2021-07-14T01:37:58,478 creating build/temp.linux-armv7l-3.9 2021-07-14T01:37:58,478 creating build/temp.linux-armv7l-3.9/msmtools 2021-07-14T01:37:58,479 creating build/temp.linux-armv7l-3.9/msmtools/estimation 2021-07-14T01:37:58,480 creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-14T01:37:58,480 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o -fopenmp 2021-07-14T01:37:58,874 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -fopenmp 2021-07-14T01:37:59,262 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T01:37:59,262 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T01:37:59,262 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T01:37:59,263 from msmtools/estimation/dense/mle_trev_given_pi.c:638: 2021-07-14T01:37:59,263 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T01:37:59,263 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T01:37:59,263 | ^~~~~~~ 2021-07-14T01:38:02,251 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-14T01:38:02,382 building 'msmtools.estimation.sparse.mle_trev_given_pi' extension 2021-07-14T01:38:02,382 creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-14T01:38:02,383 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o -fopenmp 2021-07-14T01:38:02,739 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -fopenmp 2021-07-14T01:38:03,138 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T01:38:03,138 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T01:38:03,138 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T01:38:03,138 from msmtools/estimation/sparse/mle_trev_given_pi.c:639: 2021-07-14T01:38:03,138 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T01:38:03,139 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T01:38:03,139 | ^~~~~~~ 2021-07-14T01:38:07,406 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-14T01:38:07,547 building 'msmtools.estimation.dense.mle_trev' extension 2021-07-14T01:38:07,547 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o -fopenmp 2021-07-14T01:38:07,697 msmtools/estimation/dense/_mle_trev.c: In function ‘_mle_trev_dense’: 2021-07-14T01:38:07,698 msmtools/estimation/dense/_mle_trev.c:62:27: warning: unused variable ‘value’ [-Wunused-variable] 2021-07-14T01:38:07,698 62 | double rel_err, x_norm, value; 2021-07-14T01:38:07,698 | ^~~~~ 2021-07-14T01:38:07,918 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -fopenmp 2021-07-14T01:38:08,299 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T01:38:08,300 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T01:38:08,300 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T01:38:08,300 from msmtools/estimation/dense/mle_trev.c:638: 2021-07-14T01:38:08,300 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T01:38:08,300 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T01:38:08,300 | ^~~~~~~ 2021-07-14T01:38:11,959 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-14T01:38:12,092 building 'msmtools.estimation.sparse.mle_trev' extension 2021-07-14T01:38:12,092 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o -fopenmp 2021-07-14T01:38:12,476 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -fopenmp 2021-07-14T01:38:12,856 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T01:38:12,856 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T01:38:12,856 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T01:38:12,856 from msmtools/estimation/sparse/mle_trev.c:638: 2021-07-14T01:38:12,856 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T01:38:12,857 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T01:38:12,857 | ^~~~~~~ 2021-07-14T01:38:17,211 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-14T01:38:17,343 building 'msmtools.estimation.sparse.newton.objective_sparse' extension 2021-07-14T01:38:17,343 creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-14T01:38:17,344 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/newton/objective_sparse.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.o -fopenmp 2021-07-14T01:38:17,725 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T01:38:17,725 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T01:38:17,725 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T01:38:17,725 from msmtools/estimation/sparse/newton/objective_sparse.c:637: 2021-07-14T01:38:17,725 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T01:38:17,726 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T01:38:17,726 | ^~~~~~~ 2021-07-14T01:38:17,804 msmtools/estimation/sparse/newton/objective_sparse.c: In function ‘__pyx_pf_8msmtools_10estimation_6sparse_6newton_16objective_sparse_convert_solution’: 2021-07-14T01:38:17,805 msmtools/estimation/sparse/newton/objective_sparse.c:2763:245: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘__pyx_t_8msmtools_10estimation_6sparse_6newton_16objective_sparse_DTYPE_INT_t’ {aka ‘long int’} [-Wsign-compare] 2021-07-14T01:38:17,805 2763 | for (__pyx_t_18 = (*__Pyx_BufPtrStrided1d(__pyx_t_8msmtools_10estimation_6sparse_6newton_16objective_sparse_DTYPE_INT_t *, __pyx_pybuffernd_indptr.rcbuffer->pybuffer.buf, __pyx_t_17, __pyx_pybuffernd_indptr.diminfo[0].strides)); __pyx_t_18 < __pyx_t_20; __pyx_t_18+=1) { 2021-07-14T01:38:17,805 | ^ 2021-07-14T01:38:17,840 msmtools/estimation/sparse/newton/objective_sparse.c: In function ‘__pyx_pf_8msmtools_10estimation_6sparse_6newton_16objective_sparse_2F’: 2021-07-14T01:38:17,842 msmtools/estimation/sparse/newton/objective_sparse.c:3676:245: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘__pyx_t_8msmtools_10estimation_6sparse_6newton_16objective_sparse_DTYPE_INT_t’ {aka ‘long int’} [-Wsign-compare] 2021-07-14T01:38:17,842 3676 | for (__pyx_t_18 = (*__Pyx_BufPtrStrided1d(__pyx_t_8msmtools_10estimation_6sparse_6newton_16objective_sparse_DTYPE_INT_t *, __pyx_pybuffernd_indptr.rcbuffer->pybuffer.buf, __pyx_t_17, __pyx_pybuffernd_indptr.diminfo[0].strides)); __pyx_t_18 < __pyx_t_20; __pyx_t_18+=1) { 2021-07-14T01:38:17,843 | ^ 2021-07-14T01:38:17,884 msmtools/estimation/sparse/newton/objective_sparse.c: In function ‘__pyx_pf_8msmtools_10estimation_6sparse_6newton_16objective_sparse_4_DF’: 2021-07-14T01:38:17,886 msmtools/estimation/sparse/newton/objective_sparse.c:4710:190: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘__pyx_t_5numpy_int32_t’ {aka ‘long int’} [-Wsign-compare] 2021-07-14T01:38:17,887 4710 | for (__pyx_t_21 = (*__Pyx_BufPtrStrided1d(__pyx_t_5numpy_int32_t *, __pyx_pybuffernd_indptr.rcbuffer->pybuffer.buf, __pyx_t_18, __pyx_pybuffernd_indptr.diminfo[0].strides)); __pyx_t_21 < __pyx_t_20; __pyx_t_21+=1) { 2021-07-14T01:38:17,887 | ^ 2021-07-14T01:38:31,496 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.o -lm -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-14T01:38:31,674 building 'msmtools.estimation.dense.sampler_rev' extension 2021-07-14T01:38:31,675 creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-14T01:38:31,675 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/rnglib/ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.o -fopenmp 2021-07-14T01:38:31,835 msmtools/estimation/dense/rnglib/ranlib.c: In function ‘ignpoi’: 2021-07-14T01:38:31,835 msmtools/estimation/dense/rnglib/ranlib.c:1549:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-14T01:38:31,835 1549 | int m; 2021-07-14T01:38:31,835 | ^ 2021-07-14T01:38:33,297 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/rnglib/rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.o -fopenmp 2021-07-14T01:38:33,412 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘cgn_memory’: 2021-07-14T01:38:33,413 msmtools/estimation/dense/rnglib/rnglib.c:449:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-14T01:38:33,413 449 | int j; 2021-07-14T01:38:33,413 | ^ 2021-07-14T01:38:33,419 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘set_initial_seed’: 2021-07-14T01:38:33,420 msmtools/estimation/dense/rnglib/rnglib.c:1610:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-14T01:38:33,420 1610 | int i; 2021-07-14T01:38:33,420 | ^ 2021-07-14T01:38:33,420 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘set_seed’: 2021-07-14T01:38:33,421 msmtools/estimation/dense/rnglib/rnglib.c:1709:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-14T01:38:33,421 1709 | int i; 2021-07-14T01:38:33,421 | ^ 2021-07-14T01:38:33,935 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o -fopenmp 2021-07-14T01:38:34,540 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -fopenmp 2021-07-14T01:38:34,923 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T01:38:34,923 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T01:38:34,924 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T01:38:34,924 from msmtools/estimation/dense/sampler_rev.c:640: 2021-07-14T01:38:34,924 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T01:38:34,924 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T01:38:34,924 | ^~~~~~~ 2021-07-14T01:38:43,275 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-14T01:38:43,439 building 'msmtools.estimation.dense.sampler_revpi' extension 2021-07-14T01:38:43,439 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/rnglib/ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.o -fopenmp 2021-07-14T01:38:43,595 msmtools/estimation/dense/rnglib/ranlib.c: In function ‘ignpoi’: 2021-07-14T01:38:43,595 msmtools/estimation/dense/rnglib/ranlib.c:1549:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-14T01:38:43,595 1549 | int m; 2021-07-14T01:38:43,595 | ^ 2021-07-14T01:38:45,053 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/rnglib/rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.o -fopenmp 2021-07-14T01:38:45,167 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘cgn_memory’: 2021-07-14T01:38:45,167 msmtools/estimation/dense/rnglib/rnglib.c:449:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-14T01:38:45,167 449 | int j; 2021-07-14T01:38:45,167 | ^ 2021-07-14T01:38:45,174 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘set_initial_seed’: 2021-07-14T01:38:45,174 msmtools/estimation/dense/rnglib/rnglib.c:1610:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-14T01:38:45,175 1610 | int i; 2021-07-14T01:38:45,175 | ^ 2021-07-14T01:38:45,175 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘set_seed’: 2021-07-14T01:38:45,176 msmtools/estimation/dense/rnglib/rnglib.c:1709:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-14T01:38:45,176 1709 | int i; 2021-07-14T01:38:45,176 | ^ 2021-07-14T01:38:45,692 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o -fopenmp 2021-07-14T01:38:46,191 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -fopenmp 2021-07-14T01:38:46,583 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T01:38:46,584 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T01:38:46,584 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T01:38:46,584 from msmtools/estimation/dense/sampler_revpi.c:640: 2021-07-14T01:38:46,584 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T01:38:46,584 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T01:38:46,585 | ^~~~~~~ 2021-07-14T01:38:56,422 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-14T01:38:56,596 building 'msmtools.util.kahandot' extension 2021-07-14T01:38:56,597 creating build/temp.linux-armv7l-3.9/msmtools/util 2021-07-14T01:38:56,597 creating build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-14T01:38:56,601 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/util/kahandot_src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/util/kahandot_src/_kahandot.c -o build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src/_kahandot.o -fopenmp 2021-07-14T01:38:56,816 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/util/kahandot_src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/util/kahandot_src/kahandot.c -o build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src/kahandot.o -fopenmp 2021-07-14T01:38:57,208 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T01:38:57,208 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T01:38:57,208 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T01:38:57,208 from msmtools/util/kahandot_src/kahandot.c:637: 2021-07-14T01:38:57,209 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T01:38:57,209 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T01:38:57,209 | ^~~~~~~ 2021-07-14T01:38:58,984 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src/_kahandot.o build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src/kahandot.o -o build/lib.linux-armv7l-3.9/msmtools/util/kahandot.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-14T01:38:59,118 installing to build/bdist.linux-armv7l/wheel 2021-07-14T01:38:59,118 running install 2021-07-14T01:38:59,120 running install_lib 2021-07-14T01:38:59,125 creating build/bdist.linux-armv7l 2021-07-14T01:38:59,125 creating build/bdist.linux-armv7l/wheel 2021-07-14T01:38:59,127 creating build/bdist.linux-armv7l/wheel/msmtools 2021-07-14T01:38:59,128 creating build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-14T01:38:59,130 creating build/bdist.linux-armv7l/wheel/msmtools/generation/tests 2021-07-14T01:38:59,131 copying build/lib.linux-armv7l-3.9/msmtools/generation/tests/test_generation.py -> build/bdist.linux-armv7l/wheel/msmtools/generation/tests 2021-07-14T01:38:59,133 copying build/lib.linux-armv7l-3.9/msmtools/generation/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation/tests 2021-07-14T01:38:59,135 copying build/lib.linux-armv7l-3.9/msmtools/generation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-14T01:38:59,137 copying build/lib.linux-armv7l-3.9/msmtools/generation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-14T01:38:59,139 copying build/lib.linux-armv7l-3.9/msmtools/_version.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-14T01:38:59,142 creating build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-14T01:38:59,144 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,145 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,147 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,149 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,152 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,173 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,184 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/ratematrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,187 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,194 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,196 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,199 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,216 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,218 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,221 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,223 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-14T01:38:59,224 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-14T01:38:59,226 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-14T01:38:59,231 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-14T01:38:59,234 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-14T01:38:59,236 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,239 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,255 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,257 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,259 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/util.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,261 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,263 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,265 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,266 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,268 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,277 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,279 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,281 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,283 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,297 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_nrev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,299 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,320 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-14T01:38:59,323 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,324 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_mle_trev_given_pi.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,327 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,330 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_effective_count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,332 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,334 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,336 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,339 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,340 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/dtraj.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,343 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_13_lag.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,345 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_7_lag.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,347 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_1_sliding.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,349 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_1_lag.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,351 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_7_sliding.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,353 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_13_sliding.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,355 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/dwell.npz -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,380 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/pi.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-14T01:38:59,382 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,384 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_tmatrix_sampling.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,387 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_ratematrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,389 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_mle_trev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,392 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,394 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-14T01:38:59,396 copying build/lib.linux-armv7l-3.9/msmtools/estimation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-14T01:38:59,398 copying build/lib.linux-armv7l-3.9/msmtools/estimation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-14T01:38:59,403 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,404 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,407 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,409 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/effective_counts.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,412 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,424 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,434 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,436 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,438 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,440 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,442 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,444 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,446 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,455 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,457 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,459 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,462 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,464 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,474 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,477 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,479 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,482 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,483 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,508 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/mle_rev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,510 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_dense.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,512 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,532 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,534 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,537 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton/testfiles 2021-07-14T01:38:59,537 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/testfiles/C.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton/testfiles 2021-07-14T01:38:59,548 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/mle_rev_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,550 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/linsolve_sparse.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,552 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/linsolve.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-14T01:38:59,554 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-14T01:38:59,557 creating build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-14T01:38:59,559 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,559 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,562 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,564 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,567 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,569 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,570 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,573 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,576 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,579 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,581 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,583 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,585 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,587 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,589 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,591 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,594 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,596 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,599 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,601 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,603 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,605 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,607 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,609 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-14T01:38:59,613 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,613 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,615 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,618 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,619 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_mfpt.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,622 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,624 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/P_rev_251x251.dat -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,664 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,666 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,669 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-14T01:38:59,671 copying build/lib.linux-armv7l-3.9/msmtools/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-14T01:38:59,673 copying build/lib.linux-armv7l-3.9/msmtools/analysis/api.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-14T01:38:59,676 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,677 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,680 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,682 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,684 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,687 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,690 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,692 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,694 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,697 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,699 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,701 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,703 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,705 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,707 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,709 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-14T01:38:59,712 creating build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-14T01:38:59,714 creating build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests 2021-07-14T01:38:59,715 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/test_trajectory.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests 2021-07-14T01:38:59,717 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests 2021-07-14T01:38:59,719 creating build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests/testfiles 2021-07-14T01:38:59,720 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles/dtraj.npy -> build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests/testfiles 2021-07-14T01:38:59,724 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles/dtraj.dat -> build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests/testfiles 2021-07-14T01:38:59,727 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-14T01:38:59,729 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/api.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-14T01:38:59,732 copying build/lib.linux-armv7l-3.9/msmtools/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-14T01:38:59,734 creating build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-14T01:38:59,735 creating build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-14T01:38:59,736 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-14T01:38:59,739 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-14T01:38:59,741 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-14T01:38:59,743 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-14T01:38:59,747 creating build/bdist.linux-armv7l/wheel/msmtools/flux/tests 2021-07-14T01:38:59,747 copying build/lib.linux-armv7l-3.9/msmtools/flux/tests/test_tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/tests 2021-07-14T01:38:59,750 copying build/lib.linux-armv7l-3.9/msmtools/flux/tests/test_pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/tests 2021-07-14T01:38:59,753 copying build/lib.linux-armv7l-3.9/msmtools/flux/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/tests 2021-07-14T01:38:59,754 copying build/lib.linux-armv7l-3.9/msmtools/flux/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-14T01:38:59,756 copying build/lib.linux-armv7l-3.9/msmtools/flux/api.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-14T01:38:59,760 creating build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-14T01:38:59,761 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-14T01:38:59,764 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-14T01:38:59,767 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-14T01:38:59,769 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-14T01:38:59,771 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-14T01:38:59,773 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-14T01:38:59,777 creating build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,778 copying build/lib.linux-armv7l-3.9/msmtools/util/annotators.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,781 copying build/lib.linux-armv7l-3.9/msmtools/util/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,783 copying build/lib.linux-armv7l-3.9/msmtools/util/statistics.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,786 copying build/lib.linux-armv7l-3.9/msmtools/util/_statistics.pyx -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,788 creating build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-14T01:38:59,789 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src/_kahandot.c -> build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-14T01:38:59,791 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src/kahandot.pyx -> build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-14T01:38:59,793 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src/kahandot.c -> build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-14T01:38:59,801 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src/_kahandot.h -> build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-14T01:38:59,803 copying build/lib.linux-armv7l-3.9/msmtools/util/types.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,806 copying build/lib.linux-armv7l-3.9/msmtools/util/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,808 copying build/lib.linux-armv7l-3.9/msmtools/util/sigint_handler.h -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,810 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-14T01:38:59,811 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-14T01:38:59,813 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-14T01:38:59,816 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,817 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,819 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,821 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,823 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,825 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,827 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,829 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,832 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,834 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,836 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,838 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,840 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,842 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,844 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,846 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-14T01:38:59,848 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-14T01:38:59,851 copying build/lib.linux-armv7l-3.9/msmtools/util/numeric.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,853 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,859 copying build/lib.linux-armv7l-3.9/msmtools/util/_statistics.c -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,861 copying build/lib.linux-armv7l-3.9/msmtools/util/exceptions.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-14T01:38:59,862 running install_egg_info 2021-07-14T01:38:59,868 Copying msmtools.egg-info to build/bdist.linux-armv7l/wheel/msmtools-1.2.4-py3.9.egg-info 2021-07-14T01:38:59,884 running install_scripts 2021-07-14T01:38:59,931 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-14T01:38:59,936 creating build/bdist.linux-armv7l/wheel/msmtools-1.2.4.dist-info/WHEEL 2021-07-14T01:38:59,939 creating '/tmp/pip-wheel-chsx2kty/msmtools-1.2.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T01:38:59,941 adding 'msmtools/__init__.py' 2021-07-14T01:38:59,942 adding 'msmtools/_version.py' 2021-07-14T01:38:59,944 adding 'msmtools/analysis/__init__.py' 2021-07-14T01:38:59,951 adding 'msmtools/analysis/api.py' 2021-07-14T01:38:59,954 adding 'msmtools/analysis/dense/__init__.py' 2021-07-14T01:38:59,955 adding 'msmtools/analysis/dense/assessment.py' 2021-07-14T01:38:59,957 adding 'msmtools/analysis/dense/assessment_test.py' 2021-07-14T01:38:59,958 adding 'msmtools/analysis/dense/committor.py' 2021-07-14T01:38:59,959 adding 'msmtools/analysis/dense/committor_test.py' 2021-07-14T01:38:59,961 adding 'msmtools/analysis/dense/correlations.py' 2021-07-14T01:38:59,963 adding 'msmtools/analysis/dense/correlations_test.py' 2021-07-14T01:38:59,965 adding 'msmtools/analysis/dense/decomposition.py' 2021-07-14T01:38:59,967 adding 'msmtools/analysis/dense/decomposition_test.py' 2021-07-14T01:38:59,968 adding 'msmtools/analysis/dense/expectations.py' 2021-07-14T01:38:59,970 adding 'msmtools/analysis/dense/expectations_test.py' 2021-07-14T01:38:59,972 adding 'msmtools/analysis/dense/fingerprints.py' 2021-07-14T01:38:59,974 adding 'msmtools/analysis/dense/fingerprints_test.py' 2021-07-14T01:38:59,975 adding 'msmtools/analysis/dense/hitting_probability.py' 2021-07-14T01:38:59,977 adding 'msmtools/analysis/dense/hitting_probability_test.py' 2021-07-14T01:38:59,978 adding 'msmtools/analysis/dense/mean_first_passage_time.py' 2021-07-14T01:38:59,979 adding 'msmtools/analysis/dense/mean_first_passage_time_test.py' 2021-07-14T01:38:59,982 adding 'msmtools/analysis/dense/pcca.py' 2021-07-14T01:38:59,984 adding 'msmtools/analysis/dense/pcca_test.py' 2021-07-14T01:38:59,986 adding 'msmtools/analysis/dense/sensitivity.py' 2021-07-14T01:38:59,988 adding 'msmtools/analysis/dense/sensitivity_test.py' 2021-07-14T01:38:59,989 adding 'msmtools/analysis/dense/stationary_vector.py' 2021-07-14T01:38:59,990 adding 'msmtools/analysis/dense/stationary_vector_test.py' 2021-07-14T01:38:59,993 adding 'msmtools/analysis/sparse/__init__.py' 2021-07-14T01:38:59,994 adding 'msmtools/analysis/sparse/assessment.py' 2021-07-14T01:38:59,996 adding 'msmtools/analysis/sparse/assessment_test.py' 2021-07-14T01:38:59,997 adding 'msmtools/analysis/sparse/committor.py' 2021-07-14T01:38:59,999 adding 'msmtools/analysis/sparse/committor_test.py' 2021-07-14T01:39:00,001 adding 'msmtools/analysis/sparse/decomposition.py' 2021-07-14T01:39:00,003 adding 'msmtools/analysis/sparse/decomposition_test.py' 2021-07-14T01:39:00,004 adding 'msmtools/analysis/sparse/expectations.py' 2021-07-14T01:39:00,006 adding 'msmtools/analysis/sparse/expectations_test.py' 2021-07-14T01:39:00,007 adding 'msmtools/analysis/sparse/fingerprints.py' 2021-07-14T01:39:00,009 adding 'msmtools/analysis/sparse/fingerprints_test.py' 2021-07-14T01:39:00,011 adding 'msmtools/analysis/sparse/mean_first_passage_time.py' 2021-07-14T01:39:00,012 adding 'msmtools/analysis/sparse/mean_first_passage_time_test.py' 2021-07-14T01:39:00,013 adding 'msmtools/analysis/sparse/stationary_vector.py' 2021-07-14T01:39:00,015 adding 'msmtools/analysis/sparse/stationary_vector_test.py' 2021-07-14T01:39:00,093 adding 'msmtools/analysis/tests/P_rev_251x251.dat' 2021-07-14T01:39:00,107 adding 'msmtools/analysis/tests/__init__.py' 2021-07-14T01:39:00,109 adding 'msmtools/analysis/tests/test_assessment.py' 2021-07-14T01:39:00,110 adding 'msmtools/analysis/tests/test_committor.py' 2021-07-14T01:39:00,112 adding 'msmtools/analysis/tests/test_decomposition.py' 2021-07-14T01:39:00,114 adding 'msmtools/analysis/tests/test_expectations.py' 2021-07-14T01:39:00,115 adding 'msmtools/analysis/tests/test_fingerprints.py' 2021-07-14T01:39:00,117 adding 'msmtools/analysis/tests/test_mfpt.py' 2021-07-14T01:39:00,118 adding 'msmtools/analysis/tests/test_sensitivity.py' 2021-07-14T01:39:00,120 adding 'msmtools/dtraj/__init__.py' 2021-07-14T01:39:00,122 adding 'msmtools/dtraj/api.py' 2021-07-14T01:39:00,124 adding 'msmtools/dtraj/tests/__init__.py' 2021-07-14T01:39:00,125 adding 'msmtools/dtraj/tests/test_trajectory.py' 2021-07-14T01:39:00,133 adding 'msmtools/dtraj/tests/testfiles/dtraj.dat' 2021-07-14T01:39:00,142 adding 'msmtools/dtraj/tests/testfiles/dtraj.npy' 2021-07-14T01:39:00,145 adding 'msmtools/estimation/__init__.py' 2021-07-14T01:39:00,151 adding 'msmtools/estimation/api.py' 2021-07-14T01:39:00,154 adding 'msmtools/estimation/dense/__init__.py' 2021-07-14T01:39:00,155 adding 'msmtools/estimation/dense/_mle_trev.c' 2021-07-14T01:39:00,156 adding 'msmtools/estimation/dense/_mle_trev.h' 2021-07-14T01:39:00,158 adding 'msmtools/estimation/dense/_mle_trev_given_pi.c' 2021-07-14T01:39:00,159 adding 'msmtools/estimation/dense/_mle_trev_given_pi.h' 2021-07-14T01:39:00,160 adding 'msmtools/estimation/dense/bootstrapping.py' 2021-07-14T01:39:00,162 adding 'msmtools/estimation/dense/covariance.py' 2021-07-14T01:39:00,163 adding 'msmtools/estimation/dense/covariance_test.py' 2021-07-14T01:39:00,189 adding 'msmtools/estimation/dense/mle_trev.c' 2021-07-14T01:39:00,245 adding 'msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T01:39:00,248 adding 'msmtools/estimation/dense/mle_trev.pyx' 2021-07-14T01:39:00,271 adding 'msmtools/estimation/dense/mle_trev_given_pi.c' 2021-07-14T01:39:00,316 adding 'msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T01:39:00,319 adding 'msmtools/estimation/dense/mle_trev_given_pi.pyx' 2021-07-14T01:39:00,322 adding 'msmtools/estimation/dense/ratematrix.py' 2021-07-14T01:39:00,324 adding 'msmtools/estimation/dense/sample_rev.c' 2021-07-14T01:39:00,325 adding 'msmtools/estimation/dense/sample_rev.h' 2021-07-14T01:39:00,327 adding 'msmtools/estimation/dense/sample_revpi.c' 2021-07-14T01:39:00,328 adding 'msmtools/estimation/dense/sample_revpi.h' 2021-07-14T01:39:00,330 adding 'msmtools/estimation/dense/sampler_nrev.py' 2021-07-14T01:39:00,370 adding 'msmtools/estimation/dense/sampler_rev.c' 2021-07-14T01:39:00,532 adding 'msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T01:39:00,540 adding 'msmtools/estimation/dense/sampler_rev.pyx' 2021-07-14T01:39:00,583 adding 'msmtools/estimation/dense/sampler_revpi.c' 2021-07-14T01:39:00,740 adding 'msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T01:39:00,748 adding 'msmtools/estimation/dense/sampler_revpi.pyx' 2021-07-14T01:39:00,749 adding 'msmtools/estimation/dense/tmatrix_sampler.py' 2021-07-14T01:39:00,751 adding 'msmtools/estimation/dense/tmatrix_sampler_test.py' 2021-07-14T01:39:00,752 adding 'msmtools/estimation/dense/transition_matrix.py' 2021-07-14T01:39:00,753 adding 'msmtools/estimation/dense/util.h' 2021-07-14T01:39:00,762 adding 'msmtools/estimation/dense/rnglib/ranlib.c' 2021-07-14T01:39:00,983 adding 'msmtools/estimation/dense/rnglib/ranlib.h' 2021-07-14T01:39:00,990 adding 'msmtools/estimation/dense/rnglib/rnglib.c' 2021-07-14T01:39:00,993 adding 'msmtools/estimation/dense/rnglib/rnglib.h' 2021-07-14T01:39:00,997 adding 'msmtools/estimation/sparse/__init__.py' 2021-07-14T01:39:01,000 adding 'msmtools/estimation/sparse/_mle_trev.c' 2021-07-14T01:39:01,001 adding 'msmtools/estimation/sparse/_mle_trev.h' 2021-07-14T01:39:01,003 adding 'msmtools/estimation/sparse/_mle_trev_given_pi.c' 2021-07-14T01:39:01,004 adding 'msmtools/estimation/sparse/_mle_trev_given_pi.h' 2021-07-14T01:39:01,006 adding 'msmtools/estimation/sparse/connectivity.py' 2021-07-14T01:39:01,008 adding 'msmtools/estimation/sparse/connectivity_test.py' 2021-07-14T01:39:01,009 adding 'msmtools/estimation/sparse/count_matrix.py' 2021-07-14T01:39:01,012 adding 'msmtools/estimation/sparse/effective_counts.py' 2021-07-14T01:39:01,013 adding 'msmtools/estimation/sparse/likelihood.py' 2021-07-14T01:39:01,015 adding 'msmtools/estimation/sparse/likelihood_test.py' 2021-07-14T01:39:01,044 adding 'msmtools/estimation/sparse/mle_trev.c' 2021-07-14T01:39:01,106 adding 'msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T01:39:01,110 adding 'msmtools/estimation/sparse/mle_trev.pyx' 2021-07-14T01:39:01,136 adding 'msmtools/estimation/sparse/mle_trev_given_pi.c' 2021-07-14T01:39:01,195 adding 'msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T01:39:01,200 adding 'msmtools/estimation/sparse/mle_trev_given_pi.pyx' 2021-07-14T01:39:01,202 adding 'msmtools/estimation/sparse/prior.py' 2021-07-14T01:39:01,203 adding 'msmtools/estimation/sparse/prior_test.py' 2021-07-14T01:39:01,204 adding 'msmtools/estimation/sparse/transition_matrix.py' 2021-07-14T01:39:01,206 adding 'msmtools/estimation/sparse/transition_matrix_test.py' 2021-07-14T01:39:01,208 adding 'msmtools/estimation/sparse/newton/__init__.py' 2021-07-14T01:39:01,209 adding 'msmtools/estimation/sparse/newton/linsolve.py' 2021-07-14T01:39:01,211 adding 'msmtools/estimation/sparse/newton/linsolve_sparse.py' 2021-07-14T01:39:01,213 adding 'msmtools/estimation/sparse/newton/mle_rev.py' 2021-07-14T01:39:01,214 adding 'msmtools/estimation/sparse/newton/mle_rev_test.py' 2021-07-14T01:39:01,216 adding 'msmtools/estimation/sparse/newton/objective_dense.py' 2021-07-14T01:39:01,262 adding 'msmtools/estimation/sparse/newton/objective_sparse.c' 2021-07-14T01:39:01,424 adding 'msmtools/estimation/sparse/newton/objective_sparse.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T01:39:01,432 adding 'msmtools/estimation/sparse/newton/objective_sparse.pyx' 2021-07-14T01:39:01,439 adding 'msmtools/estimation/sparse/newton/testfiles/C.dat' 2021-07-14T01:39:01,443 adding 'msmtools/estimation/tests/__init__.py' 2021-07-14T01:39:01,444 adding 'msmtools/estimation/tests/test_bootstrapping.py' 2021-07-14T01:39:01,446 adding 'msmtools/estimation/tests/test_connectivity.py' 2021-07-14T01:39:01,448 adding 'msmtools/estimation/tests/test_count_matrix.py' 2021-07-14T01:39:01,449 adding 'msmtools/estimation/tests/test_effective_count_matrix.py' 2021-07-14T01:39:01,450 adding 'msmtools/estimation/tests/test_likelihood.py' 2021-07-14T01:39:01,452 adding 'msmtools/estimation/tests/test_mle_trev.py' 2021-07-14T01:39:01,454 adding 'msmtools/estimation/tests/test_mle_trev_given_pi.py' 2021-07-14T01:39:01,455 adding 'msmtools/estimation/tests/test_prior.py' 2021-07-14T01:39:01,456 adding 'msmtools/estimation/tests/test_ratematrix.py' 2021-07-14T01:39:01,458 adding 'msmtools/estimation/tests/test_tmatrix_sampling.py' 2021-07-14T01:39:01,459 adding 'msmtools/estimation/tests/test_transition_matrix.py' 2021-07-14T01:39:01,462 adding 'msmtools/estimation/tests/testfiles/C_13_lag.dat' 2021-07-14T01:39:01,463 adding 'msmtools/estimation/tests/testfiles/C_13_sliding.dat' 2021-07-14T01:39:01,464 adding 'msmtools/estimation/tests/testfiles/C_1_lag.dat' 2021-07-14T01:39:01,465 adding 'msmtools/estimation/tests/testfiles/C_1_sliding.dat' 2021-07-14T01:39:01,466 adding 'msmtools/estimation/tests/testfiles/C_7_lag.dat' 2021-07-14T01:39:01,468 adding 'msmtools/estimation/tests/testfiles/C_7_sliding.dat' 2021-07-14T01:39:01,477 adding 'msmtools/estimation/tests/testfiles/dtraj.dat' 2021-07-14T01:39:01,520 adding 'msmtools/estimation/tests/testfiles/dwell.npz' 2021-07-14T01:39:01,529 adding 'msmtools/estimation/tests/testfiles/pi.dat' 2021-07-14T01:39:01,531 adding 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2021-07-14T01:39:01,668 adding 'msmtools-1.2.4.dist-info/RECORD' 2021-07-14T01:39:01,707 removing build/bdist.linux-armv7l/wheel 2021-07-14T01:39:01,951 Building wheel for msmtools (setup.py): finished with status 'done' 2021-07-14T01:39:01,983 Created wheel for msmtools: filename=msmtools-1.2.4-cp39-cp39-linux_armv7l.whl size=2258760 sha256=0a75260c8585b05886b9ea1361680d73f99994744c33630d0a3f752ae4599dfa 2021-07-14T01:39:01,984 Stored in directory: /tmp/pip-ephem-wheel-cache-ce29ownl/wheels/73/2c/e9/f665b3fcde6ea818f1733a31005dd08a5dc3d56630dfe7926b 2021-07-14T01:39:02,002 Successfully built msmtools 2021-07-14T01:39:02,082 Removed build tracker: '/tmp/pip-req-tracker-pw_61n3c'