2021-07-14T03:01:53,534 Created temporary directory: /tmp/pip-ephem-wheel-cache-xwl96q_v 2021-07-14T03:01:53,537 Created temporary directory: /tmp/pip-req-tracker-3p76dolu 2021-07-14T03:01:53,538 Initialized build tracking at /tmp/pip-req-tracker-3p76dolu 2021-07-14T03:01:53,538 Created build tracker: /tmp/pip-req-tracker-3p76dolu 2021-07-14T03:01:53,538 Entered build tracker: /tmp/pip-req-tracker-3p76dolu 2021-07-14T03:01:53,539 Created temporary directory: /tmp/pip-wheel-hjbqisjd 2021-07-14T03:01:53,571 1 location(s) to search for versions of pybedtools: 2021-07-14T03:01:53,571 * https://pypi.org/simple/pybedtools/ 2021-07-14T03:01:53,571 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2021-07-14T03:01:53,572 Getting page https://pypi.org/simple/pybedtools/ 2021-07-14T03:01:53,574 Found index url https://pypi.org/simple 2021-07-14T03:01:53,678 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz#sha256=6ab084ce36f26c6086680ef25693873f9534ddb3aefec3aedbc8221e5f6f4fb6 (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2021-07-14T03:01:53,679 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz#sha256=4e55a927a22979473c1414b43154cd3e5a51380b1895bc555a85ee4bf385ba25 (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2021-07-14T03:01:53,679 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz#sha256=78ccf10923b00ec14cf337b3b9624e39fdd383ba29048f3cc03e3aabc52edb40 (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2021-07-14T03:01:53,680 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz#sha256=16e46c664e47cd36d926de202d9ac99cf7e8c970e6e008603ccb6a23139a257a (from https://pypi.org/simple/pybedtools/), version: 0.5 2021-07-14T03:01:53,680 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz#sha256=4bc9cdadb12fae47c1a2e423f467cfd92dc282a52f2ac5d21c35611ef59c698d (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2021-07-14T03:01:53,680 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz#sha256=006e637d2a2e6f98f7b178211adc69fabf3cf37e168c730dbfe9e2fa810f8f8d (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2021-07-14T03:01:53,681 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz#sha256=416406bbf059372e3214c68688447cbb9cd4e45b6a58b1615be4ff932975ede6 (from https://pypi.org/simple/pybedtools/), version: 0.6 2021-07-14T03:01:53,681 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz#sha256=da3f1ec9e6d23cba6627adb124a27d291f72b855006a277d91c1b366bfccdb22 (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2021-07-14T03:01:53,682 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz#sha256=7263d2a32a4805e0b0c25be32f38a17de760557c2d83234e46364ecd2debec14 (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2021-07-14T03:01:53,682 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz#sha256=bd7ad8584d6d19eef175a0f9b9ff00db903db532ae4c3e8bad614246974daff0 (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2021-07-14T03:01:53,682 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz#sha256=98cd0e8bc278e8d3bf584cde5eea43f23251c91bbd70407172db206d2f3f751f (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2021-07-14T03:01:53,683 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz#sha256=0ee69c4670bae332f6de600af5edb4ed45e8dcaf3988e7eb78ab53a1889a8d9c (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2021-07-14T03:01:53,683 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz#sha256=b7d2436c2f29b92cf7c2a4552a6a13adc73b2026d7a25c4aaae6797589698c68 (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2021-07-14T03:01:53,684 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz#sha256=b31853473db3a755bbe668b5fc209f0cd9ed876f15e192c244e348f4a7cb1cfb (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2021-07-14T03:01:53,684 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz#sha256=a278a1b5ae230eb9c1b57c4da45dad5646aead899e927ad4d9f38df3f90841db (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2021-07-14T03:01:53,685 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz#sha256=56915b3e2200c6fb56260a36f839e66ce27d7dd3ef55fba278c3931b786fbfd1 (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2021-07-14T03:01:53,685 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz#sha256=a0b3bd7c32786067a767585ab17ab9e04bf7e227f275ff3883fab9c1d8e458ba (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2021-07-14T03:01:53,685 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz#sha256=d889e8e1f75803b13f0f774320ca3e38eea88e7998866a1c90e9ba51caa855be (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2021-07-14T03:01:53,686 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz#sha256=15cfae9e8a207ded403ad9fa2e77f09d14c2fe377d1bc5f8b063647e2d0554e0 (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2021-07-14T03:01:53,686 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz#sha256=f2428b4845083eff36385bec241ddddf7488a7de3f18886a78c73226e9e3306c (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2021-07-14T03:01:53,687 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz#sha256=8b6382036c715b49f83e35cc787d7084c1633ebe94a2a3c4102e805613f7426b (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2021-07-14T03:01:53,687 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz#sha256=dba8758bd86121e4dcfc8b25ebae7d3b2de6ff9e38e4cdd9dc03f128bf5d4c9d (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2021-07-14T03:01:53,687 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz#sha256=e80e8b73b233ec6950069e0e1cf14127aff8310a8eaf3ee663bdfbcb61309fdc (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2021-07-14T03:01:53,688 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz#sha256=e9134d7dc3de41b90126df633fe3aa854a0427d7ada834dc8681081e8b2fea14 (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2021-07-14T03:01:53,688 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz#sha256=518a2311bd33f29cf2ee8fc1a028dda8c8e380c9fc83fcb0fbaa206933174b50 (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2021-07-14T03:01:53,689 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz#sha256=4eebd2cd1764ee1c604fd881703c3e329195485350b987b7fb8db42d232984f6 (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2021-07-14T03:01:53,689 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz#sha256=c035e078617f94720eb627e20c91f2377a7bd9158a137872a6ac88f800898593 (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2021-07-14T03:01:53,689 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz#sha256=a184a36099458627e7ef52ea88218f7c00dc9c505b4256ece9ede58b1efa8771 (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2021-07-14T03:01:53,690 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2021-07-14T03:01:53,713 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2021-07-14T03:01:53,736 Collecting pybedtools==0.8.0 2021-07-14T03:01:53,738 Created temporary directory: /tmp/pip-unpack-knuidhop 2021-07-14T03:01:53,785 Downloading pybedtools-0.8.0.tar.gz (12.5 MB) 2021-07-14T03:01:55,938 Added pybedtools==0.8.0 from https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz#sha256=4eebd2cd1764ee1c604fd881703c3e329195485350b987b7fb8db42d232984f6 to build tracker '/tmp/pip-req-tracker-3p76dolu' 2021-07-14T03:01:55,939 Running setup.py (path:/tmp/pip-wheel-hjbqisjd/pybedtools_788597e76e8d485f8f8cc8e0dad9b3de/setup.py) egg_info for package pybedtools 2021-07-14T03:01:55,940 Created temporary directory: /tmp/pip-pip-egg-info-xz7sad2z 2021-07-14T03:01:55,941 Running command python setup.py egg_info 2021-07-14T03:01:57,535 running egg_info 2021-07-14T03:01:57,537 creating /tmp/pip-pip-egg-info-xz7sad2z/pybedtools.egg-info 2021-07-14T03:01:57,538 writing /tmp/pip-pip-egg-info-xz7sad2z/pybedtools.egg-info/PKG-INFO 2021-07-14T03:01:57,541 writing dependency_links to /tmp/pip-pip-egg-info-xz7sad2z/pybedtools.egg-info/dependency_links.txt 2021-07-14T03:01:57,543 writing requirements to /tmp/pip-pip-egg-info-xz7sad2z/pybedtools.egg-info/requires.txt 2021-07-14T03:01:57,544 writing top-level names to /tmp/pip-pip-egg-info-xz7sad2z/pybedtools.egg-info/top_level.txt 2021-07-14T03:01:57,545 writing manifest file '/tmp/pip-pip-egg-info-xz7sad2z/pybedtools.egg-info/SOURCES.txt' 2021-07-14T03:01:57,709 reading manifest file '/tmp/pip-pip-egg-info-xz7sad2z/pybedtools.egg-info/SOURCES.txt' 2021-07-14T03:01:57,711 adding license file 'LICENSE.txt' 2021-07-14T03:01:57,715 writing manifest file '/tmp/pip-pip-egg-info-xz7sad2z/pybedtools.egg-info/SOURCES.txt' 2021-07-14T03:01:57,801 Source in /tmp/pip-wheel-hjbqisjd/pybedtools_788597e76e8d485f8f8cc8e0dad9b3de has version 0.8.0, which satisfies requirement pybedtools==0.8.0 from https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz#sha256=4eebd2cd1764ee1c604fd881703c3e329195485350b987b7fb8db42d232984f6 2021-07-14T03:01:57,802 Removed pybedtools==0.8.0 from https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz#sha256=4eebd2cd1764ee1c604fd881703c3e329195485350b987b7fb8db42d232984f6 from build tracker '/tmp/pip-req-tracker-3p76dolu' 2021-07-14T03:01:57,807 Created temporary directory: /tmp/pip-unpack-8w_61syt 2021-07-14T03:01:57,808 Building wheels for collected packages: pybedtools 2021-07-14T03:01:57,812 Created temporary directory: /tmp/pip-wheel-whc5wuct 2021-07-14T03:01:57,813 Building wheel for pybedtools (setup.py): started 2021-07-14T03:01:57,813 Destination directory: /tmp/pip-wheel-whc5wuct 2021-07-14T03:01:57,814 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hjbqisjd/pybedtools_788597e76e8d485f8f8cc8e0dad9b3de/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hjbqisjd/pybedtools_788597e76e8d485f8f8cc8e0dad9b3de/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-whc5wuct 2021-07-14T03:01:59,219 running bdist_wheel 2021-07-14T03:01:59,220 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2021-07-14T03:01:59,223 running build 2021-07-14T03:01:59,223 running build_py 2021-07-14T03:01:59,372 creating build 2021-07-14T03:01:59,372 creating build/lib.linux-armv7l-3.9 2021-07-14T03:01:59,373 creating build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,374 copying pybedtools/version.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,376 copying pybedtools/helpers.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,379 copying pybedtools/settings.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,381 copying pybedtools/parallel.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,383 copying pybedtools/filenames.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,385 copying pybedtools/paths.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,387 copying pybedtools/__main__.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,389 copying pybedtools/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,392 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,398 copying pybedtools/logger.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,400 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,407 copying pybedtools/stats.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,410 creating build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,410 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,413 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,415 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,418 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,420 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,422 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,424 copying pybedtools/test/test1.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,428 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,430 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,432 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,434 copying pybedtools/test/test_issues.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,436 copying pybedtools/test/test_scripts.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-14T03:01:59,440 creating build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-14T03:01:59,441 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-14T03:01:59,444 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-14T03:01:59,446 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-14T03:01:59,448 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-14T03:01:59,451 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-14T03:01:59,453 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-14T03:01:59,456 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-14T03:01:59,460 creating build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:01:59,461 copying pybedtools/scripts/peak_pie.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:01:59,463 copying pybedtools/scripts/venn_mpl.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:01:59,465 copying pybedtools/scripts/venn_gchart.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:01:59,468 copying pybedtools/scripts/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:01:59,470 copying pybedtools/scripts/annotate.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:01:59,472 copying pybedtools/scripts/intron_exon_reads.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:01:59,474 copying pybedtools/scripts/intersection_matrix.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:01:59,476 copying pybedtools/scripts/py_ms_example.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:01:59,479 creating build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,480 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,481 running egg_info 2021-07-14T03:01:59,493 creating pybedtools.egg-info 2021-07-14T03:01:59,494 writing pybedtools.egg-info/PKG-INFO 2021-07-14T03:01:59,497 writing dependency_links to pybedtools.egg-info/dependency_links.txt 2021-07-14T03:01:59,499 writing requirements to pybedtools.egg-info/requires.txt 2021-07-14T03:01:59,501 writing top-level names to pybedtools.egg-info/top_level.txt 2021-07-14T03:01:59,502 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2021-07-14T03:01:59,513 reading manifest file 'pybedtools.egg-info/SOURCES.txt' 2021-07-14T03:01:59,514 adding license file 'LICENSE.txt' 2021-07-14T03:01:59,518 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2021-07-14T03:01:59,533 copying pybedtools/cbedtools.cpp -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,555 copying pybedtools/featurefuncs.cpp -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:01:59,567 creating build/lib.linux-armv7l-3.9/pybedtools/include 2021-07-14T03:01:59,568 copying pybedtools/include/bedFile.cpp -> build/lib.linux-armv7l-3.9/pybedtools/include 2021-07-14T03:01:59,571 copying pybedtools/include/fileType.cpp -> build/lib.linux-armv7l-3.9/pybedtools/include 2021-07-14T03:01:59,573 copying pybedtools/include/gzstream.cpp -> build/lib.linux-armv7l-3.9/pybedtools/include 2021-07-14T03:01:59,576 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,578 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,580 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,583 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,585 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,587 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,592 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,605 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,782 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,785 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,787 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,790 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,792 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,795 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,797 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,806 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,813 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,815 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,817 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,819 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,822 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,827 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,831 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,834 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,837 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,843 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,904 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,906 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,908 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,912 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,915 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,918 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,920 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,922 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,925 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,927 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,930 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,933 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,935 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,937 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,940 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,942 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,956 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,960 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,963 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,966 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,970 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,973 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,976 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:01:59,979 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,038 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,042 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,045 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,048 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,051 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,058 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,061 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,065 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,068 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,071 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,074 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,079 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-14T03:02:00,082 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:02:00,085 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:02:00,090 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:02:00,093 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-14T03:02:00,096 copying pybedtools/scripts/pybedtools -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-14T03:02:00,099 creating build/lib.linux-armv7l-3.9/pybedtools/scripts/examples 2021-07-14T03:02:00,100 copying pybedtools/scripts/examples/pbt_plotting_example.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts/examples 2021-07-14T03:02:00,109 running build_ext 2021-07-14T03:02:00,113 building 'pybedtools.cbedtools' extension 2021-07-14T03:02:00,114 creating build/temp.linux-armv7l-3.9 2021-07-14T03:02:00,115 creating build/temp.linux-armv7l-3.9/pybedtools 2021-07-14T03:02:00,116 creating build/temp.linux-armv7l-3.9/pybedtools/include 2021-07-14T03:02:00,117 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-3.9/pybedtools/cbedtools.o 2021-07-14T03:02:03,017 pybedtools/cbedtools.cpp: In function ‘int __Pyx_modinit_type_init_code()’: 2021-07-14T03:02:03,018 pybedtools/cbedtools.cpp:16521:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-14T03:02:03,018 16521 | __pyx_type_10pybedtools_9cbedtools_Interval.tp_print = 0; 2021-07-14T03:02:03,018 | ^~~~~~~~ 2021-07-14T03:02:03,020 pybedtools/cbedtools.cpp:16540:55: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-14T03:02:03,021 16540 | __pyx_type_10pybedtools_9cbedtools_IntervalIterator.tp_print = 0; 2021-07-14T03:02:03,021 | ^~~~~~~~ 2021-07-14T03:02:03,022 pybedtools/cbedtools.cpp:16548:51: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-14T03:02:03,023 16548 | __pyx_type_10pybedtools_9cbedtools_IntervalFile.tp_print = 0; 2021-07-14T03:02:03,023 | ^~~~~~~~ 2021-07-14T03:02:03,090 pybedtools/cbedtools.cpp: In function ‘PyObject* __Pyx_decode_c_bytes(const char*, Py_ssize_t, Py_ssize_t, Py_ssize_t, const char*, const char*, PyObject* (*)(const char*, Py_ssize_t, const char*))’: 2021-07-14T03:02:03,090 pybedtools/cbedtools.cpp:17851:45: warning: ‘PyObject* PyUnicode_FromUnicode(const Py_UNICODE*, Py_ssize_t)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,090 17851 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-14T03:02:03,090 | ^ 2021-07-14T03:02:03,092 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T03:02:03,092 from /usr/include/python3.9/Python.h:97, 2021-07-14T03:02:03,092 from pybedtools/cbedtools.cpp:33: 2021-07-14T03:02:03,092 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-14T03:02:03,092 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-14T03:02:03,092 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,095 pybedtools/cbedtools.cpp: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject***, PyObject*, PyObject**, Py_ssize_t, const char*)’: 2021-07-14T03:02:03,095 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,095 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-14T03:02:03,095 | ^ 2021-07-14T03:02:03,095 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-14T03:02:03,095 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-14T03:02:03,096 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,096 pybedtools/cbedtools.cpp:17923:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,096 17923 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,096 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,096 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T03:02:03,097 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T03:02:03,097 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,097 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,097 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-14T03:02:03,098 | ^ 2021-07-14T03:02:03,098 pybedtools/cbedtools.cpp:17923:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,098 17923 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,098 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,098 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T03:02:03,099 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T03:02:03,099 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,099 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,100 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-14T03:02:03,100 | ^ 2021-07-14T03:02:03,100 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-14T03:02:03,100 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-14T03:02:03,100 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,100 pybedtools/cbedtools.cpp:17923:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,100 17923 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,101 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,101 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T03:02:03,101 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T03:02:03,101 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,102 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,102 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-14T03:02:03,102 | ^ 2021-07-14T03:02:03,102 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-14T03:02:03,102 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-14T03:02:03,103 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,103 pybedtools/cbedtools.cpp:17923:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,103 17923 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,103 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,103 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T03:02:03,104 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T03:02:03,104 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,104 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,104 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-14T03:02:03,104 | ^ 2021-07-14T03:02:03,105 pybedtools/cbedtools.cpp:17923:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,105 17923 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,105 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,105 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T03:02:03,105 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T03:02:03,106 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,106 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,106 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-14T03:02:03,106 | ^ 2021-07-14T03:02:03,106 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-14T03:02:03,106 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-14T03:02:03,107 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,107 pybedtools/cbedtools.cpp:17923:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,107 17923 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,107 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,107 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T03:02:03,108 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T03:02:03,108 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,108 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,108 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-14T03:02:03,108 | ^ 2021-07-14T03:02:03,109 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-14T03:02:03,109 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-14T03:02:03,109 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,109 pybedtools/cbedtools.cpp:17939:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,109 17939 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,110 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,110 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T03:02:03,110 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T03:02:03,110 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,110 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,111 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-14T03:02:03,111 | ^ 2021-07-14T03:02:03,111 pybedtools/cbedtools.cpp:17939:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,111 17939 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,111 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,112 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T03:02:03,112 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T03:02:03,112 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,112 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,112 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-14T03:02:03,113 | ^ 2021-07-14T03:02:03,113 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-14T03:02:03,113 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-14T03:02:03,113 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,113 pybedtools/cbedtools.cpp:17939:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,114 17939 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,114 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,114 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T03:02:03,114 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T03:02:03,114 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,115 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,115 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-14T03:02:03,115 | ^ 2021-07-14T03:02:03,115 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-14T03:02:03,115 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-14T03:02:03,116 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,116 pybedtools/cbedtools.cpp:17939:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,116 17939 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,116 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,116 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T03:02:03,116 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T03:02:03,117 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,117 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,117 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-14T03:02:03,117 | ^ 2021-07-14T03:02:03,117 pybedtools/cbedtools.cpp:17939:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,118 17939 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,118 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,118 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T03:02:03,118 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T03:02:03,118 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,119 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-14T03:02:03,119 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-14T03:02:03,119 | ^ 2021-07-14T03:02:03,119 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-14T03:02:03,119 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-14T03:02:03,120 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,120 pybedtools/cbedtools.cpp:17939:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-14T03:02:03,120 17939 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T03:02:03,120 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:03,120 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T03:02:03,120 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T03:02:03,121 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T03:02:04,178 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-14T03:02:04,272 Building wheel for pybedtools (setup.py): finished with status 'error' 2021-07-14T03:02:04,272 ERROR: Failed building wheel for pybedtools 2021-07-14T03:02:04,273 Running setup.py clean for pybedtools 2021-07-14T03:02:04,273 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hjbqisjd/pybedtools_788597e76e8d485f8f8cc8e0dad9b3de/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hjbqisjd/pybedtools_788597e76e8d485f8f8cc8e0dad9b3de/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-14T03:02:05,897 usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] 2021-07-14T03:02:05,898 or: setup.py --help [cmd1 cmd2 ...] 2021-07-14T03:02:05,898 or: setup.py --help-commands 2021-07-14T03:02:05,899 or: setup.py cmd --help 2021-07-14T03:02:05,900 error: option --all not recognized 2021-07-14T03:02:05,982 ERROR: Failed cleaning build dir for pybedtools 2021-07-14T03:02:05,985 Failed to build pybedtools 2021-07-14T03:02:05,985 ERROR: Failed to build one or more wheels 2021-07-14T03:02:05,986 Exception information: 2021-07-14T03:02:05,986 Traceback (most recent call last): 2021-07-14T03:02:05,986 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-14T03:02:05,986 status = self.run(options, args) 2021-07-14T03:02:05,986 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-14T03:02:05,986 return func(self, options, args) 2021-07-14T03:02:05,986 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-14T03:02:05,986 raise CommandError( 2021-07-14T03:02:05,986 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-14T03:02:05,989 Removed build tracker: '/tmp/pip-req-tracker-3p76dolu'