2021-07-14T03:41:12,281 Created temporary directory: /tmp/pip-ephem-wheel-cache-cnfkp4jn
2021-07-14T03:41:12,284 Created temporary directory: /tmp/pip-req-tracker-1mbfpfzw
2021-07-14T03:41:12,284 Initialized build tracking at /tmp/pip-req-tracker-1mbfpfzw
2021-07-14T03:41:12,284 Created build tracker: /tmp/pip-req-tracker-1mbfpfzw
2021-07-14T03:41:12,284 Entered build tracker: /tmp/pip-req-tracker-1mbfpfzw
2021-07-14T03:41:12,285 Created temporary directory: /tmp/pip-wheel-xbap155k
2021-07-14T03:41:12,318 1 location(s) to search for versions of pycoalescence:
2021-07-14T03:41:12,318 * https://pypi.org/simple/pycoalescence/
2021-07-14T03:41:12,318 Fetching project page and analyzing links: https://pypi.org/simple/pycoalescence/
2021-07-14T03:41:12,319 Getting page https://pypi.org/simple/pycoalescence/
2021-07-14T03:41:12,320 Found index url https://pypi.org/simple
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2021-07-14T03:41:12,464   Found link https://files.pythonhosted.org/packages/56/1a/d22fa069d2e04255021950d870270c9d5fda1f070fd888bb5a4e85b51a6c/pycoalescence-1.2.6rc12.tar.gz#sha256=aa1825a56dce685a61673c4600eb1e767f7f5d684a7ce8ee36b429331d0f1208 (from https://pypi.org/simple/pycoalescence/), version: 1.2.6rc12
2021-07-14T03:41:12,465   Found link https://files.pythonhosted.org/packages/18/de/d94da5f254746ad2cc7689f401e5797b6617c3905361071069a74b76319e/pycoalescence-1.2.6rc13.tar.gz#sha256=85b8673dfb3cc081603325bdcc9ae51b110a95f85446c5658f3029eb5a3c1948 (from https://pypi.org/simple/pycoalescence/), version: 1.2.6rc13
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2021-07-14T03:41:12,495   Found link https://files.pythonhosted.org/packages/fa/59/791da6431a5a1b127c43a65f17ecc227cfb7c12ac6504eacf2a388e88bac/pycoalescence-1.2.7.post10.tar.gz#sha256=a236cf5a53813bb30aa18ff2ac84a718a4b0bd720c9299d36aa1c41059d01f74 (from https://pypi.org/simple/pycoalescence/), version: 1.2.7.post10
2021-07-14T03:41:12,495   Found link https://files.pythonhosted.org/packages/e5/0f/3b78aab338f1f54b88b73b327fbdea1e01fdebd511e07542da961a69c5ac/pycoalescence-1.2.7.post11.tar.gz#sha256=3eaf70f5501e42c6bf6d018576355a25e89288381e62454c32c6fb5e3fd80b02 (from https://pypi.org/simple/pycoalescence/), version: 1.2.7.post11
2021-07-14T03:41:12,496   Found link https://files.pythonhosted.org/packages/55/bf/fa09d5cb5979d6e7542c1396a9c39d9d51c2ce47cfff0dd27817adfebe2b/pycoalescence-1.2.7.post12.tar.gz#sha256=462831c768753f8963f5adc5250acb145046c6192e7a5131938a17db125a5f6e (from https://pypi.org/simple/pycoalescence/), version: 1.2.7.post12
2021-07-14T03:41:12,496   Found link https://files.pythonhosted.org/packages/d0/2f/fc6a5d4b8ad8344c107063d8570d4818acca59cd41ed07c74a398ea2f8e6/pycoalescence-1.2.7.post13.tar.gz#sha256=02a0e5060a5e21c906304be4a64566e341171c4aa5f1c00d315ed42baaf8a1a4 (from https://pypi.org/simple/pycoalescence/), version: 1.2.7.post13
2021-07-14T03:41:12,496   Found link https://files.pythonhosted.org/packages/b7/c0/2eb4eed95bc1158f95f2b9ac307069a7052c516d8f8378bdc7ea96199258/pycoalescence-1.2.7.post14.tar.gz#sha256=64cf19fb6815a172d6fefffbde87dce9b65b1a6aad746724233075d628ed2a87 (from https://pypi.org/simple/pycoalescence/), version: 1.2.7.post14
2021-07-14T03:41:12,496   Found link https://files.pythonhosted.org/packages/5a/e7/bf26724ce25c92ba80f5fe07a9f4fe479a80eef30f933efc31faff643d69/pycoalescence-1.2.7.post15.tar.gz#sha256=1e313d6e10e9434476f8152c9e4ad5275e904cd47cdc3ac825508ce0af0821f8 (from https://pypi.org/simple/pycoalescence/), version: 1.2.7.post15
2021-07-14T03:41:12,497   Found link https://files.pythonhosted.org/packages/f7/49/9ebbc15bb23e1d629494081baa48599e322a4763ada3bd7e156fbbd1ab0c/pycoalescence-1.2.7.post16.tar.gz#sha256=667756d993e1b7c5f7c5c3d58fa7316a4f5a48023152848c045f9eca0a0f122d (from https://pypi.org/simple/pycoalescence/), version: 1.2.7.post16
2021-07-14T03:41:12,497   Found link https://files.pythonhosted.org/packages/5b/e8/604a3aaf1a94e02d78c8baad2822d3f6c6b3894882aee6727ec1ae624eb5/pycoalescence-1.2.8a1.tar.gz#sha256=d28ecac1bec9d962c2c4541c043d7cf36963c642640125b0436958077fbb2785 (from https://pypi.org/simple/pycoalescence/), version: 1.2.8a1
2021-07-14T03:41:12,497   Found link https://files.pythonhosted.org/packages/c3/c0/eca0d7ba070a314b4103665e47108f1a915a918e0b5cc88b3c8bd0e8d471/pycoalescence-1.2.8.tar.gz#sha256=21f407779b066935bc997125c25d3f56ef6791caf0d703e5387a46b764be36ce (from https://pypi.org/simple/pycoalescence/), version: 1.2.8
2021-07-14T03:41:12,498   Found link https://files.pythonhosted.org/packages/e4/52/a62d0a30466ed62b808f52feedb1eeaebcd50abac6e9df889ac562117a40/pycoalescence-1.2.8.post1.tar.gz#sha256=c36e1c0f67ab21425b467c1747a9a0ef84e855a1ef97579ae152f70535a654c8 (from https://pypi.org/simple/pycoalescence/), version: 1.2.8.post1
2021-07-14T03:41:12,498   Found link https://files.pythonhosted.org/packages/d3/aa/563aedbe7a79b59817773b0860a775e10edfaafb3bd86cb8e1b3146b97be/pycoalescence-1.2.8.post2.tar.gz#sha256=981beb6b6e5c56a81fc09f2b22719e5da89fe1b55dc5b7c7b293e30eff9075e1 (from https://pypi.org/simple/pycoalescence/), version: 1.2.8.post2
2021-07-14T03:41:12,498   Found link https://files.pythonhosted.org/packages/a3/36/f9b29bfca57db80e8002d681df0d31ed8ce9434e4a72c2739e0cabe47449/pycoalescence-1.2.8.post3.tar.gz#sha256=22ee1d8b67ab675d8e3a96003f412cb0989e4c5198d97de5bf767c8379cc39d2 (from https://pypi.org/simple/pycoalescence/), version: 1.2.8.post3
2021-07-14T03:41:12,498   Found link https://files.pythonhosted.org/packages/df/87/67a44e106fbf69bbef5649909bf4c134e89eb92da4606fb2f6fca30b669b/pycoalescence-1.2.8.post4.tar.gz#sha256=685bc64c825e7b5a8d5bc67875dff9a907ee0d267f85172fb426802ad7b7d4f8 (from https://pypi.org/simple/pycoalescence/), version: 1.2.8.post4
2021-07-14T03:41:12,499   Found link https://files.pythonhosted.org/packages/58/a9/06d55bf0848369313d542ee90f079e60400a0b008927a7546facd8c258c8/pycoalescence-1.2.8.post5.tar.gz#sha256=804b1b863826da54aaa2e99fad2ed2b8a90ded4454787b88880bf6da26030c13 (from https://pypi.org/simple/pycoalescence/), version: 1.2.8.post5
2021-07-14T03:41:12,499   Found link https://files.pythonhosted.org/packages/68/9d/2accf7bc5373e5a33d3788f489e6ba248f04f8a9d45b8f303099953f359b/pycoalescence-1.2.8.post6.tar.gz#sha256=d01e41f78c29cf135415ced037c77cf168bf11a9b8d6b6b43d7625b8a79430ae (from https://pypi.org/simple/pycoalescence/), version: 1.2.8.post6
2021-07-14T03:41:12,499   Found link https://files.pythonhosted.org/packages/5e/0c/3c3073ee8b67f3ed39bb88cde108dc34835b8a18025966454bf7bd6d5297/pycoalescence-1.2.9.tar.gz#sha256=df180a91403ad2ade5b7456d32bd5147828314167bd2ba853c4b2f1e1d1afb11 (from https://pypi.org/simple/pycoalescence/), version: 1.2.9
2021-07-14T03:41:12,499   Found link https://files.pythonhosted.org/packages/b0/60/38fa4b80f4ae92a8fa2167a156c2322149c5b4eb50f89df0c56bc634ce48/pycoalescence-1.2.9.post1.tar.gz#sha256=aff7a6bc5ceaef8412f17a5e62a2db356ef1b3cd2e25f0650c322e50b945c938 (from https://pypi.org/simple/pycoalescence/), version: 1.2.9.post1
2021-07-14T03:41:12,500   Found link https://files.pythonhosted.org/packages/60/05/d06788d9887dfd8897619154a9dd4f000b7cd3e5e6247616a10ef36a18d5/pycoalescence-1.2.9.post2.tar.gz#sha256=05f64fafaf005e437a424884ea3ce8420593bb11335456fff9038476bdd77319 (from https://pypi.org/simple/pycoalescence/), version: 1.2.9.post2
2021-07-14T03:41:12,500 Skipping link: not a file: https://pypi.org/simple/pycoalescence/
2021-07-14T03:41:12,537 Given no hashes to check 1 links for project 'pycoalescence': discarding no candidates
2021-07-14T03:41:12,556 Collecting pycoalescence==1.2.7a12
2021-07-14T03:41:12,557   Created temporary directory: /tmp/pip-unpack-fv1fvba3
2021-07-14T03:41:12,811   Downloading pycoalescence-1.2.7a12.tar.gz (273 kB)
2021-07-14T03:41:13,188   Added pycoalescence==1.2.7a12 from https://files.pythonhosted.org/packages/58/27/08ad540da8164c89bc0b740374c65042a0f458e4ca7f4ff5ea9dfc37fe56/pycoalescence-1.2.7a12.tar.gz#sha256=5fedd4c4c92c7e761848be562447b50d50067f92db84ba338d57c1c393da771c to build tracker '/tmp/pip-req-tracker-1mbfpfzw'
2021-07-14T03:41:13,189     Running setup.py (path:/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/setup.py) egg_info for package pycoalescence
2021-07-14T03:41:13,190     Created temporary directory: /tmp/pip-pip-egg-info-clsto6_l
2021-07-14T03:41:13,190     Running command python setup.py egg_info
2021-07-14T03:41:14,491     /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/coalescence_tree.py:195: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-07-14T03:41:14,492       if record_fragments is "T":
2021-07-14T03:41:14,492     /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/coalescence_tree.py:212: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-07-14T03:41:14,492       if record_spatial is "T":
2021-07-14T03:41:14,492     /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/coalescence_tree.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-07-14T03:41:14,492       elif record_spatial is "F":
2021-07-14T03:41:14,492     /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/coalescence_tree.py:574: SyntaxWarning: "is not" with a literal. Did you mean "!="?
2021-07-14T03:41:14,493       if sys.version_info[0] is not 3:
2021-07-14T03:41:14,495     /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/coalescence_tree.py:1438: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-07-14T03:41:14,496       if len(self.fragments) is 0:
2021-07-14T03:41:14,497     /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/coalescence_tree.py:1774: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-07-14T03:41:14,497       if len(ret) is 0:
2021-07-14T03:41:14,497     /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/coalescence_tree.py:1881: SyntaxWarning: "is not" with a literal. Did you mean "!="?
2021-07-14T03:41:14,497       if sys.version_info[0] is not 3:
2021-07-14T03:41:14,498     /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/coalescence_tree.py:1936: SyntaxWarning: "is not" with a literal. Did you mean "!="?
2021-07-14T03:41:14,498       if sys.version_info[0] is not 3:
2021-07-14T03:41:14,498     /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/coalescence_tree.py:2052: SyntaxWarning: "is not" with a literal. Did you mean "!="?
2021-07-14T03:41:14,498       if sys.version_info[0] is not 3:
2021-07-14T03:41:15,827     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T03:41:15,828       warnings.warn(
2021-07-14T03:41:15,949     running egg_info
2021-07-14T03:41:15,952     creating /tmp/pip-pip-egg-info-clsto6_l/pycoalescence.egg-info
2021-07-14T03:41:15,954     writing /tmp/pip-pip-egg-info-clsto6_l/pycoalescence.egg-info/PKG-INFO
2021-07-14T03:41:15,957     writing dependency_links to /tmp/pip-pip-egg-info-clsto6_l/pycoalescence.egg-info/dependency_links.txt
2021-07-14T03:41:15,959     writing requirements to /tmp/pip-pip-egg-info-clsto6_l/pycoalescence.egg-info/requires.txt
2021-07-14T03:41:15,960     writing top-level names to /tmp/pip-pip-egg-info-clsto6_l/pycoalescence.egg-info/top_level.txt
2021-07-14T03:41:15,961     writing manifest file '/tmp/pip-pip-egg-info-clsto6_l/pycoalescence.egg-info/SOURCES.txt'
2021-07-14T03:41:16,107     reading manifest file '/tmp/pip-pip-egg-info-clsto6_l/pycoalescence.egg-info/SOURCES.txt'
2021-07-14T03:41:16,109     reading manifest template 'MANIFEST.in'
2021-07-14T03:41:16,113     warning: no files found matching 'pycoalescence/lib/configure'
2021-07-14T03:41:16,113     warning: no files found matching 'pycoalescence/lib/Makefile'
2021-07-14T03:41:16,238     warning: no previously-included files found matching 'pycoalescence/lib/necsim/main.cpp'
2021-07-14T03:41:16,239     no previously-included directories found matching 'pycoalescence/lib/cmake-*'
2021-07-14T03:41:16,240     no previously-included directories found matching 'pycoalescence/lib/necsim/cmake-*'
2021-07-14T03:41:16,241     no previously-included directories found matching 'pycoalescence/lib/SimTest'
2021-07-14T03:41:16,241     warning: no files found matching 'pycoalescence/necsim/libnecsim.so'
2021-07-14T03:41:16,242     warning: no previously-included files matching '*DS_Store' found anywhere in distribution
2021-07-14T03:41:16,242     adding license file 'LICENSE.txt'
2021-07-14T03:41:16,249     writing manifest file '/tmp/pip-pip-egg-info-clsto6_l/pycoalescence.egg-info/SOURCES.txt'
2021-07-14T03:41:16,473   Source in /tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4 has version 1.2.7a12, which satisfies requirement pycoalescence==1.2.7a12 from https://files.pythonhosted.org/packages/58/27/08ad540da8164c89bc0b740374c65042a0f458e4ca7f4ff5ea9dfc37fe56/pycoalescence-1.2.7a12.tar.gz#sha256=5fedd4c4c92c7e761848be562447b50d50067f92db84ba338d57c1c393da771c
2021-07-14T03:41:16,474   Removed pycoalescence==1.2.7a12 from https://files.pythonhosted.org/packages/58/27/08ad540da8164c89bc0b740374c65042a0f458e4ca7f4ff5ea9dfc37fe56/pycoalescence-1.2.7a12.tar.gz#sha256=5fedd4c4c92c7e761848be562447b50d50067f92db84ba338d57c1c393da771c from build tracker '/tmp/pip-req-tracker-1mbfpfzw'
2021-07-14T03:41:16,479 Created temporary directory: /tmp/pip-unpack-hype_3e0
2021-07-14T03:41:16,480 Building wheels for collected packages: pycoalescence
2021-07-14T03:41:16,483   Created temporary directory: /tmp/pip-wheel-nl2zuneg
2021-07-14T03:41:16,484   Building wheel for pycoalescence (setup.py): started
2021-07-14T03:41:16,484   Destination directory: /tmp/pip-wheel-nl2zuneg
2021-07-14T03:41:16,484   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nl2zuneg
2021-07-14T03:41:18,861   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T03:41:18,862     warnings.warn(
2021-07-14T03:41:18,996   running bdist_wheel
2021-07-14T03:41:19,001   running build
2021-07-14T03:41:19,001   running build_py
2021-07-14T03:41:19,134   creating build
2021-07-14T03:41:19,135   creating build/lib.linux-armv7l-3.9
2021-07-14T03:41:19,135   creating build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,137   copying pycoalescence/landscape_metrics.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,139   copying pycoalescence/installer.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,141   copying pycoalescence/dispersal_simulation.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,144   copying pycoalescence/__init__.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,145   copying pycoalescence/spatial_algorithms.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,148   copying pycoalescence/merger.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,150   copying pycoalescence/patched_landscape.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,153   copying pycoalescence/helper.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,155   copying pycoalescence/fragments.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,158   copying pycoalescence/simulation.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,162   copying pycoalescence/hpc_setup.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,164   copying pycoalescence/fragment_config.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,166   copying pycoalescence/future_except.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,168   copying pycoalescence/sqlite_connection.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,170   copying pycoalescence/map.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,172   copying pycoalescence/landscape.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,175   copying pycoalescence/coalescence_tree.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,180   copying pycoalescence/system_operations.py -> build/lib.linux-armv7l-3.9/pycoalescence
2021-07-14T03:41:19,182   creating build/lib.linux-armv7l-3.9/pycoalescence/necsim
2021-07-14T03:41:19,183   copying pycoalescence/necsim/__init__.py -> build/lib.linux-armv7l-3.9/pycoalescence/necsim
2021-07-14T03:41:19,187   creating build/lib.linux-armv7l-3.9/pycoalescence/reference
2021-07-14T03:41:19,187   copying pycoalescence/reference/parameter_descriptions.json -> build/lib.linux-armv7l-3.9/pycoalescence/reference
2021-07-14T03:41:19,192   running build_ext
2021-07-14T03:41:19,603   -- The CXX compiler identification is GNU 10.2.1
2021-07-14T03:41:19,660   -- Detecting CXX compiler ABI info
2021-07-14T03:41:20,128   -- Detecting CXX compiler ABI info - done
2021-07-14T03:41:20,187   -- Check for working CXX compiler: /usr/bin/c++ - skipped
2021-07-14T03:41:20,189   -- Detecting CXX compile features
2021-07-14T03:41:20,191   -- Detecting CXX compile features - done
2021-07-14T03:41:20,198   -- Compiler is /usr/bin/c++
2021-07-14T03:41:20,232   CMake Error at /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
2021-07-14T03:41:20,232     Could NOT find GDAL: Found unsuitable version "GDAL_VERSION-NOTFOUND", but
2021-07-14T03:41:20,232     required is at least "2.1.0" (found GDAL_LIBRARY-NOTFOUND)
2021-07-14T03:41:20,232   Call Stack (most recent call first):
2021-07-14T03:41:20,233     /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:456 (_FPHSA_FAILURE_MESSAGE)
2021-07-14T03:41:20,233     /usr/share/cmake-3.18/Modules/FindGDAL.cmake:153 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
2021-07-14T03:41:20,233     CMakeLists.txt:106 (find_package)


2021-07-14T03:41:20,233   -- Configuring incomplete, errors occurred!
2021-07-14T03:41:20,234   See also "/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/build/temp.linux-armv7l-3.9/CMakeFiles/CMakeOutput.log".
2021-07-14T03:41:20,245   Traceback (most recent call last):
2021-07-14T03:41:20,245     File "/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/installer.py", line 389, in run_cmake
2021-07-14T03:41:20,246       subprocess.check_call(['cmake', src_dir] + cmake_args,
2021-07-14T03:41:20,246     File "/usr/lib/python3.9/subprocess.py", line 373, in check_call
2021-07-14T03:41:20,247       raise CalledProcessError(retcode, cmd)
2021-07-14T03:41:20,247   subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/lib', '-DPYTHON_LIBRARY:FILEPATH=/usr/lib', "-DPYTHON_CPPFLAGS:='-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=.  -fstack-protector-strong -Wformat -Werror=format-security  -g -fwrapv -O2   '", "-DPYTHON_LDFLAGS:='-pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2'", '-DPYTHON_INCLUDE_DIR:FILEPATH=/usr/include/python3.9', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY:PATH=/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/build/lib.linux-armv7l-3.9/pycoalescence/necsim']' returned non-zero exit status 1.

2021-07-14T03:41:20,247   During handling of the above exception, another exception occurred:

2021-07-14T03:41:20,247   Traceback (most recent call last):
2021-07-14T03:41:20,248     File "<string>", line 1, in <module>
2021-07-14T03:41:20,248     File "/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/setup.py", line 36, in <module>
2021-07-14T03:41:20,248       setup(name='pycoalescence',
2021-07-14T03:41:20,248     File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 153, in setup
2021-07-14T03:41:20,248       return distutils.core.setup(**attrs)
2021-07-14T03:41:20,248     File "/usr/lib/python3.9/distutils/core.py", line 148, in setup
2021-07-14T03:41:20,249       dist.run_commands()
2021-07-14T03:41:20,249     File "/usr/lib/python3.9/distutils/dist.py", line 966, in run_commands
2021-07-14T03:41:20,250       self.run_command(cmd)
2021-07-14T03:41:20,250     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-14T03:41:20,251       cmd_obj.run()
2021-07-14T03:41:20,251     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 223, in run
2021-07-14T03:41:20,251       self.run_command('build')
2021-07-14T03:41:20,252     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-07-14T03:41:20,252       self.distribution.run_command(command)
2021-07-14T03:41:20,252     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-14T03:41:20,253       cmd_obj.run()
2021-07-14T03:41:20,254     File "/usr/lib/python3.9/distutils/command/build.py", line 135, in run
2021-07-14T03:41:20,254       self.run_command(cmd_name)
2021-07-14T03:41:20,254     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-07-14T03:41:20,254       self.distribution.run_command(command)
2021-07-14T03:41:20,255     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-14T03:41:20,256       cmd_obj.run()
2021-07-14T03:41:20,256     File "/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/installer.py", line 402, in run
2021-07-14T03:41:20,257       self.build_extension(ext)
2021-07-14T03:41:20,257     File "/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/installer.py", line 413, in build_extension
2021-07-14T03:41:20,258       self.setuptools_cmake(ext)
2021-07-14T03:41:20,258     File "/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/installer.py", line 375, in setuptools_cmake
2021-07-14T03:41:20,259       self.run_cmake(ext.sourcedir, cmake_args, build_args, self.build_temp, env)
2021-07-14T03:41:20,259     File "/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/installer.py", line 394, in run_cmake
2021-07-14T03:41:20,260       raise SystemError("Fatal error running cmake in directory: {}".format(cpe))
2021-07-14T03:41:20,260   SystemError: Fatal error running cmake in directory: Command '['cmake', '/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/pycoalescence/lib', '-DPYTHON_LIBRARY:FILEPATH=/usr/lib', "-DPYTHON_CPPFLAGS:='-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=.  -fstack-protector-strong -Wformat -Werror=format-security  -g -fwrapv -O2   '", "-DPYTHON_LDFLAGS:='-pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2'", '-DPYTHON_INCLUDE_DIR:FILEPATH=/usr/include/python3.9', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY:PATH=/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/build/lib.linux-armv7l-3.9/pycoalescence/necsim']' returned non-zero exit status 1.
2021-07-14T03:41:20,508   Building wheel for pycoalescence (setup.py): finished with status 'error'
2021-07-14T03:41:20,508   ERROR: Failed building wheel for pycoalescence
2021-07-14T03:41:20,509   Running setup.py clean for pycoalescence
2021-07-14T03:41:20,509   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xbap155k/pycoalescence_ec7d1a661cfe466ea1517f1f251ac2a4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-14T03:41:22,916   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T03:41:22,916     warnings.warn(
2021-07-14T03:41:23,029   running clean
2021-07-14T03:41:23,031   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-14T03:41:23,038   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-14T03:41:23,047   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-14T03:41:23,048   'build/scripts-3.9' does not exist -- can't clean it
2021-07-14T03:41:23,048   removing 'build'
2021-07-14T03:41:23,263 Failed to build pycoalescence
2021-07-14T03:41:23,263 ERROR: Failed to build one or more wheels
2021-07-14T03:41:23,264 Exception information:
2021-07-14T03:41:23,264 Traceback (most recent call last):
2021-07-14T03:41:23,264   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-14T03:41:23,264     status = self.run(options, args)
2021-07-14T03:41:23,264   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-14T03:41:23,264     return func(self, options, args)
2021-07-14T03:41:23,264   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-14T03:41:23,264     raise CommandError(
2021-07-14T03:41:23,264 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-14T03:41:23,267 Removed build tracker: '/tmp/pip-req-tracker-1mbfpfzw'