2021-07-14T04:09:27,926 Created temporary directory: /tmp/pip-ephem-wheel-cache-agpt5c88
2021-07-14T04:09:27,929 Created temporary directory: /tmp/pip-req-tracker-jp8orzdr
2021-07-14T04:09:27,930 Initialized build tracking at /tmp/pip-req-tracker-jp8orzdr
2021-07-14T04:09:27,930 Created build tracker: /tmp/pip-req-tracker-jp8orzdr
2021-07-14T04:09:27,930 Entered build tracker: /tmp/pip-req-tracker-jp8orzdr
2021-07-14T04:09:27,931 Created temporary directory: /tmp/pip-wheel-ohci949q
2021-07-14T04:09:27,961 1 location(s) to search for versions of clusgeo:
2021-07-14T04:09:27,961 * https://pypi.org/simple/clusgeo/
2021-07-14T04:09:27,962 Fetching project page and analyzing links: https://pypi.org/simple/clusgeo/
2021-07-14T04:09:27,962 Getting page https://pypi.org/simple/clusgeo/
2021-07-14T04:09:27,964 Found index url https://pypi.org/simple
2021-07-14T04:09:28,057   Found link https://files.pythonhosted.org/packages/be/51/4f5f9e0ee19752e9513404ed346b86a2549e72730a07a446479f7686f3e7/clusgeo-3.0.0.tar.gz#sha256=73fec81eecaf9cc68e8850098c74ecb35b6acbca34c42131425197585316b305 (from https://pypi.org/simple/clusgeo/) (requires-python:>=2.2, <4), version: 3.0.0
2021-07-14T04:09:28,058   Found link https://files.pythonhosted.org/packages/5f/f2/fd3dc1a466639d36b30855c479764cae86cf4a17cc7726767857f2fdc66d/clusgeo-3.0.1.tar.gz#sha256=57017504bd3f118ec8e93f43a588e6b6b11fcb459f121dad02e766a2160c9b98 (from https://pypi.org/simple/clusgeo/) (requires-python:>=2.2, <4), version: 3.0.1
2021-07-14T04:09:28,058   Found link https://files.pythonhosted.org/packages/e6/9c/2d069ce91a0013515dee0876fef4cc3f92747abadc95214ee1f9130d3d2f/clusgeo-3.0.2.tar.gz#sha256=84b739fb6306cc159d18677da7ba24e015a5851f789a53d90c77cfc0cd21a438 (from https://pypi.org/simple/clusgeo/), version: 3.0.2
2021-07-14T04:09:28,058   Found link https://files.pythonhosted.org/packages/be/2b/01029b0128284157893d9ce8cd9beab576526154c55e047ac9812f2f9e50/clusgeo-3.0.3.tar.gz#sha256=c294e0151e543d713458c6344515c221812082620dd1cb4cf871437807b355f0 (from https://pypi.org/simple/clusgeo/), version: 3.0.3
2021-07-14T04:09:28,059   Found link https://files.pythonhosted.org/packages/08/b3/5fbb592896d50172c8d42b368decb9a6cbfc8d3d6828a4df2e2e5b966205/clusgeo-3.0.4.tar.gz#sha256=1f56f2394c1e22227cccf1cf89fb2ed2d9ac7bdfa79e2d44c16d1d3864b83e3a (from https://pypi.org/simple/clusgeo/), version: 3.0.4
2021-07-14T04:09:28,059   Found link https://files.pythonhosted.org/packages/3c/da/6cd5e94d0ddc08a156ee0b3baa7991f5e4618259af2569846723d1799ec4/clusgeo-3.0.5.tar.gz#sha256=ad265b0639ed4c035c075e1021bfb4bb605f265a2f6b46081b1e443e42e28cd9 (from https://pypi.org/simple/clusgeo/), version: 3.0.5
2021-07-14T04:09:28,059   Found link https://files.pythonhosted.org/packages/42/6a/38c2efc35bf20ac4a3e9bee6ba7f3d13b7d250ac97e06e9496ef8050f341/clusgeo-3.0.6.tar.gz#sha256=d26c6c06a46be3bbe737e3b5d06ba9263e47d539efb9311d3868acdfbac257bb (from https://pypi.org/simple/clusgeo/), version: 3.0.6
2021-07-14T04:09:28,059   Found link https://files.pythonhosted.org/packages/db/bd/aa1271fe51883a9714005fcc8eb6814e8df5daedb0a596fc84c9d1941768/clusgeo-3.0.7.tar.gz#sha256=887d6e848adcf746b4091bc97a3562e36e9aa984cc4c9a5dabd5d0641e720923 (from https://pypi.org/simple/clusgeo/), version: 3.0.7
2021-07-14T04:09:28,060   Found link https://files.pythonhosted.org/packages/a5/a2/0c666d0426ab4060f60e7a2ff33b27c79bdffc9b760807182016266d7a18/clusgeo-4.0.0.tar.gz#sha256=c14a3949f3e648f89afc43d479434a238dbf8c4c985c59e7fc18f242efd4f04d (from https://pypi.org/simple/clusgeo/), version: 4.0.0
2021-07-14T04:09:28,060   Found link https://files.pythonhosted.org/packages/7c/fb/0a2bc7ab3d0e19b7d5ccb23133c19eb4ee0ace468fa8cb3b2198d106f3b7/clusgeo-4.0.1.tar.gz#sha256=20c5dde16c650cffd71fdd8829da428222a423412ef04bf1da9e717fd76abdb7 (from https://pypi.org/simple/clusgeo/), version: 4.0.1
2021-07-14T04:09:28,060   Found link https://files.pythonhosted.org/packages/4d/02/2b57407a2f1ea0671aa40b964de7614a137f16b2be254059af1e9d7e9f76/clusgeo-4.0.2.tar.gz#sha256=28b18fcb0b2913a78b9950336001b6350efec0e046ed8f736355d4ff1f092297 (from https://pypi.org/simple/clusgeo/), version: 4.0.2
2021-07-14T04:09:28,060   Found link https://files.pythonhosted.org/packages/40/87/91ae21f2af7dc49cd5b08b6b1c481d8395a21c63f8e940b741bed40f4afe/clusgeo-4.0.3.tar.gz#sha256=d62304ef63a7111f77948c1a0bdf0cb7f24fa34b16daddf359dd96bc20b1ce04 (from https://pypi.org/simple/clusgeo/), version: 4.0.3
2021-07-14T04:09:28,061   Found link https://files.pythonhosted.org/packages/07/2b/ab268121ba11bacdc9f77198a2a771e121f382669526049aeec0d32df3e3/clusgeo-4.1.0.tar.gz#sha256=93f3339074ce99267baf2c17a0896ffef5fcd6366d8f311acb42757e4aef20ea (from https://pypi.org/simple/clusgeo/) (requires-python:>=2.2, <4), version: 4.1.0
2021-07-14T04:09:28,061 Skipping link: not a file: https://pypi.org/simple/clusgeo/
2021-07-14T04:09:28,081 Given no hashes to check 1 links for project 'clusgeo': discarding no candidates
2021-07-14T04:09:28,100 Collecting clusgeo==4.0.0
2021-07-14T04:09:28,102   Created temporary directory: /tmp/pip-unpack-6apmaq45
2021-07-14T04:09:28,279   Downloading clusgeo-4.0.0.tar.gz (16 kB)
2021-07-14T04:09:28,337   Added clusgeo==4.0.0 from https://files.pythonhosted.org/packages/a5/a2/0c666d0426ab4060f60e7a2ff33b27c79bdffc9b760807182016266d7a18/clusgeo-4.0.0.tar.gz#sha256=c14a3949f3e648f89afc43d479434a238dbf8c4c985c59e7fc18f242efd4f04d to build tracker '/tmp/pip-req-tracker-jp8orzdr'
2021-07-14T04:09:28,338     Running setup.py (path:/tmp/pip-wheel-ohci949q/clusgeo_d29496c3f496417f82afa96b36efe744/setup.py) egg_info for package clusgeo
2021-07-14T04:09:28,339     Created temporary directory: /tmp/pip-pip-egg-info-vjgo0zv3
2021-07-14T04:09:28,339     Running command python setup.py egg_info
2021-07-14T04:09:29,440     running egg_info
2021-07-14T04:09:29,442     creating /tmp/pip-pip-egg-info-vjgo0zv3/clusgeo.egg-info
2021-07-14T04:09:29,444     writing /tmp/pip-pip-egg-info-vjgo0zv3/clusgeo.egg-info/PKG-INFO
2021-07-14T04:09:29,446     writing dependency_links to /tmp/pip-pip-egg-info-vjgo0zv3/clusgeo.egg-info/dependency_links.txt
2021-07-14T04:09:29,447     writing requirements to /tmp/pip-pip-egg-info-vjgo0zv3/clusgeo.egg-info/requires.txt
2021-07-14T04:09:29,448     writing top-level names to /tmp/pip-pip-egg-info-vjgo0zv3/clusgeo.egg-info/top_level.txt
2021-07-14T04:09:29,450     writing manifest file '/tmp/pip-pip-egg-info-vjgo0zv3/clusgeo.egg-info/SOURCES.txt'
2021-07-14T04:09:29,777     reading manifest file '/tmp/pip-pip-egg-info-vjgo0zv3/clusgeo.egg-info/SOURCES.txt'
2021-07-14T04:09:29,779     reading manifest template 'MANIFEST.in'
2021-07-14T04:09:29,780     adding license file 'LICENSE'
2021-07-14T04:09:29,782     writing manifest file '/tmp/pip-pip-egg-info-vjgo0zv3/clusgeo.egg-info/SOURCES.txt'
2021-07-14T04:09:29,858   Source in /tmp/pip-wheel-ohci949q/clusgeo_d29496c3f496417f82afa96b36efe744 has version 4.0.0, which satisfies requirement clusgeo==4.0.0 from https://files.pythonhosted.org/packages/a5/a2/0c666d0426ab4060f60e7a2ff33b27c79bdffc9b760807182016266d7a18/clusgeo-4.0.0.tar.gz#sha256=c14a3949f3e648f89afc43d479434a238dbf8c4c985c59e7fc18f242efd4f04d
2021-07-14T04:09:29,859   Removed clusgeo==4.0.0 from https://files.pythonhosted.org/packages/a5/a2/0c666d0426ab4060f60e7a2ff33b27c79bdffc9b760807182016266d7a18/clusgeo-4.0.0.tar.gz#sha256=c14a3949f3e648f89afc43d479434a238dbf8c4c985c59e7fc18f242efd4f04d from build tracker '/tmp/pip-req-tracker-jp8orzdr'
2021-07-14T04:09:29,865 Created temporary directory: /tmp/pip-unpack-mlwxa_ff
2021-07-14T04:09:29,865 Building wheels for collected packages: clusgeo
2021-07-14T04:09:29,869   Created temporary directory: /tmp/pip-wheel-_tak4t_6
2021-07-14T04:09:29,870   Building wheel for clusgeo (setup.py): started
2021-07-14T04:09:29,870   Destination directory: /tmp/pip-wheel-_tak4t_6
2021-07-14T04:09:29,870   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ohci949q/clusgeo_d29496c3f496417f82afa96b36efe744/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ohci949q/clusgeo_d29496c3f496417f82afa96b36efe744/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_tak4t_6
2021-07-14T04:09:30,972   running bdist_wheel
2021-07-14T04:09:31,131   running build
2021-07-14T04:09:31,131   running build_py
2021-07-14T04:09:31,272   creating build
2021-07-14T04:09:31,272   creating build/lib.linux-armv7l-3.9
2021-07-14T04:09:31,273   creating build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T04:09:31,274   copying clusgeo/build.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T04:09:31,276   copying clusgeo/cluster.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T04:09:31,279   copying clusgeo/__init__.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T04:09:31,281   copying clusgeo/utils.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T04:09:31,283   running build_ext
2021-07-14T04:09:31,289   building 'lib.libclusgeo3' extension
2021-07-14T04:09:31,289   creating build/temp.linux-armv7l-3.9
2021-07-14T04:09:31,290   creating build/temp.linux-armv7l-3.9/src
2021-07-14T04:09:31,290   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/clusGeo3.c -o build/temp.linux-armv7l-3.9/src/clusGeo3.o -O3 -std=c99
2021-07-14T04:09:31,411   src/clusGeo3.c: In function ‘findSurf’:
2021-07-14T04:09:31,411   src/clusGeo3.c:56:7: warning: unused variable ‘maxAtomIndx’ [-Wunused-variable]
2021-07-14T04:09:31,411      56 |   int maxAtomIndx;  double minVal;  int minAtomsI;
2021-07-14T04:09:31,412         |       ^~~~~~~~~~~
2021-07-14T04:09:31,412   src/clusGeo3.c:55:8: warning: unused variable ‘isSurf’ [-Wunused-variable]
2021-07-14T04:09:31,412      55 |   int* isSurf = (int*) malloc(sizeof(int)*size);
2021-07-14T04:09:31,412         |        ^~~~~~
2021-07-14T04:09:31,412   src/clusGeo3.c:53:10: warning: unused variable ‘xPosInit’ [-Wunused-variable]
2021-07-14T04:09:31,412      53 |   double xPosInit = xPos; double yPosInit = yPos; double zPosInit = zPos;
2021-07-14T04:09:31,413         |          ^~~~~~~~
2021-07-14T04:09:31,413   src/clusGeo3.c: In function ‘getEta1’:
2021-07-14T04:09:31,413   src/clusGeo3.c:92:10: warning: unused variable ‘distBuf’ [-Wunused-variable]
2021-07-14T04:09:31,414      92 |   double distBuf;
2021-07-14T04:09:31,414         |          ^~~~~~~
2021-07-14T04:09:31,541   src/clusGeo3.c: In function ‘findSurf’:
2021-07-14T04:09:31,541   src/clusGeo3.c:68:36: warning: ‘minAtomsI’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-14T04:09:31,541      68 |             surfAtomsBuff[marcher] = minAtomsI;
2021-07-14T04:09:31,542         |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2021-07-14T04:09:32,183   creating build/lib.linux-armv7l-3.9/lib
2021-07-14T04:09:32,184   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/clusGeo3.o -lm -o build/lib.linux-armv7l-3.9/lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so
2021-07-14T04:09:32,324   installing to build/bdist.linux-armv7l/wheel
2021-07-14T04:09:32,324   running install
2021-07-14T04:09:32,325   running install_lib
2021-07-14T04:09:32,329   creating build/bdist.linux-armv7l
2021-07-14T04:09:32,329   creating build/bdist.linux-armv7l/wheel
2021-07-14T04:09:32,331   creating build/bdist.linux-armv7l/wheel/lib
2021-07-14T04:09:32,332   copying build/lib.linux-armv7l-3.9/lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lib
2021-07-14T04:09:32,335   creating build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T04:09:32,336   copying build/lib.linux-armv7l-3.9/clusgeo/build.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T04:09:32,338   copying build/lib.linux-armv7l-3.9/clusgeo/cluster.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T04:09:32,341   copying build/lib.linux-armv7l-3.9/clusgeo/__init__.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T04:09:32,343   copying build/lib.linux-armv7l-3.9/clusgeo/utils.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T04:09:32,345   running install_egg_info
2021-07-14T04:09:32,370   running egg_info
2021-07-14T04:09:32,370   writing clusgeo.egg-info/PKG-INFO
2021-07-14T04:09:32,372   writing dependency_links to clusgeo.egg-info/dependency_links.txt
2021-07-14T04:09:32,374   writing requirements to clusgeo.egg-info/requires.txt
2021-07-14T04:09:32,375   writing top-level names to clusgeo.egg-info/top_level.txt
2021-07-14T04:09:32,380   reading manifest file 'clusgeo.egg-info/SOURCES.txt'
2021-07-14T04:09:32,382   reading manifest template 'MANIFEST.in'
2021-07-14T04:09:32,383   adding license file 'LICENSE'
2021-07-14T04:09:32,385   writing manifest file 'clusgeo.egg-info/SOURCES.txt'
2021-07-14T04:09:32,386   Copying clusgeo.egg-info to build/bdist.linux-armv7l/wheel/clusgeo-4.0.0-py3.9.egg-info
2021-07-14T04:09:32,396   running install_scripts
2021-07-14T04:09:32,477   creating build/bdist.linux-armv7l/wheel/clusgeo-4.0.0.dist-info/WHEEL
2021-07-14T04:09:32,480   creating '/tmp/pip-wheel-_tak4t_6/clusgeo-4.0.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T04:09:32,482   adding 'clusgeo/__init__.py'
2021-07-14T04:09:32,484   adding 'clusgeo/build.py'
2021-07-14T04:09:32,487   adding 'clusgeo/cluster.py'
2021-07-14T04:09:32,489   adding 'clusgeo/utils.py'
2021-07-14T04:09:32,498   adding 'lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T04:09:32,500   adding 'clusgeo-4.0.0.dist-info/LICENSE'
2021-07-14T04:09:32,501   adding 'clusgeo-4.0.0.dist-info/METADATA'
2021-07-14T04:09:32,502   adding 'clusgeo-4.0.0.dist-info/WHEEL'
2021-07-14T04:09:32,503   adding 'clusgeo-4.0.0.dist-info/top_level.txt'
2021-07-14T04:09:32,504   adding 'clusgeo-4.0.0.dist-info/RECORD'
2021-07-14T04:09:32,505   removing build/bdist.linux-armv7l/wheel
2021-07-14T04:09:32,598   Building wheel for clusgeo (setup.py): finished with status 'done'
2021-07-14T04:09:32,600   Created wheel for clusgeo: filename=clusgeo-4.0.0-cp39-cp39-linux_armv7l.whl size=28337 sha256=657131f02ad1c7d9968a0d68f3d3f35bd91731736944a67b3ec4021ca39f9360
2021-07-14T04:09:32,601   Stored in directory: /tmp/pip-ephem-wheel-cache-agpt5c88/wheels/18/b7/4b/e1cc0aed8a09876ef4805de6ad99dae6703d11505484ac046e
2021-07-14T04:09:32,613 Successfully built clusgeo
2021-07-14T04:09:32,617 Removed build tracker: '/tmp/pip-req-tracker-jp8orzdr'