2021-07-14T04:38:48,939 Created temporary directory: /tmp/pip-ephem-wheel-cache-vxpuc24a 2021-07-14T04:38:48,942 Created temporary directory: /tmp/pip-req-tracker-olv0lfuc 2021-07-14T04:38:48,943 Initialized build tracking at /tmp/pip-req-tracker-olv0lfuc 2021-07-14T04:38:48,943 Created build tracker: /tmp/pip-req-tracker-olv0lfuc 2021-07-14T04:38:48,943 Entered build tracker: /tmp/pip-req-tracker-olv0lfuc 2021-07-14T04:38:48,944 Created temporary directory: /tmp/pip-wheel-xq28yb6i 2021-07-14T04:38:48,974 1 location(s) to search for versions of asap3: 2021-07-14T04:38:48,974 * https://pypi.org/simple/asap3/ 2021-07-14T04:38:48,975 Fetching project page and analyzing links: https://pypi.org/simple/asap3/ 2021-07-14T04:38:48,976 Getting page https://pypi.org/simple/asap3/ 2021-07-14T04:38:48,977 Found index url https://pypi.org/simple 2021-07-14T04:38:49,165 Found link https://files.pythonhosted.org/packages/b3/18/a0fd1f238ed751f8882f815a62354e9e6df3077a9afe218d7754a2fd6a5d/asap3-3.9.6.tar.gz#sha256=9c2895508d6ef7806769ff2bd7d783a895b145543cf906d886192ae0ffc2280d (from https://pypi.org/simple/asap3/), version: 3.9.6 2021-07-14T04:38:49,165 Found link https://files.pythonhosted.org/packages/6d/4b/7623da3d3d4086c524a94def4340bf1e1b4aee1c935420fad6123b20d678/asap3-3.10.0.tar.gz#sha256=4ccb0640ce65acecccd4e871353d6cf94521577507c397623a31e47cf6c624eb (from https://pypi.org/simple/asap3/), version: 3.10.0 2021-07-14T04:38:49,166 Found link https://files.pythonhosted.org/packages/a8/18/3552565db206a682f6c934e8f1291a71095f21b6387d3d2c284c071efe11/asap3-3.10.2.tar.gz#sha256=60ec50c9c50d1b3115edde2ab8f2f42370e08f6eb15c14de0350724d78c47df1 (from https://pypi.org/simple/asap3/), version: 3.10.2 2021-07-14T04:38:49,166 Found link https://files.pythonhosted.org/packages/46/93/a36962deb1049cd6c189fc9944213a7456fc78d7158273a4cf494503e4b0/asap3-3.10.3.tar.gz#sha256=9fabec07296c83fc33c41ac2475e57bd3a2ef688a8364bc3000e70b7195c396e (from https://pypi.org/simple/asap3/), version: 3.10.3 2021-07-14T04:38:49,166 Found link https://files.pythonhosted.org/packages/51/a7/753ffcd46d2da6bb3d07bbe7e2bf320b71e19568b43fc9f3f774cf741f33/asap3-3.10.5.tar.gz#sha256=909682a35b7336bb7deaaa75f697ba26affbff27ad17e3b9fca4a1b3717206c7 (from https://pypi.org/simple/asap3/), version: 3.10.5 2021-07-14T04:38:49,167 Found link https://files.pythonhosted.org/packages/21/ee/fcceabc5e6c11a3398a1039f4ca39c627fafe6176cc6540aedb75f4384f6/asap3-3.10.6.tar.gz#sha256=832ab0e94903efe9ee632db20c56ed605386fc2e62bf863ae3bf81092047ae95 (from https://pypi.org/simple/asap3/), version: 3.10.6 2021-07-14T04:38:49,167 Found link https://files.pythonhosted.org/packages/28/af/109859a068fb8f90b0fa9a594486480b8ae7e9f911593441d8ce82a0f9dd/asap3-3.10.7.tar.gz#sha256=20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773 (from https://pypi.org/simple/asap3/), version: 3.10.7 2021-07-14T04:38:49,167 Found link https://files.pythonhosted.org/packages/2a/66/8dec58eb472f7855d0837b93daa75825a7bc243b773566902d00b043be18/asap3-3.10.8.tar.gz#sha256=a167e89c717cc75c1ff41bb370b9454563c29333e49b7383e668094af547d139 (from https://pypi.org/simple/asap3/), version: 3.10.8 2021-07-14T04:38:49,167 Found link https://files.pythonhosted.org/packages/31/d5/4dea3371c9d83192c450b8905074653276fb33e9f0e20207471cc0025d09/asap3-3.10.10.tar.gz#sha256=58cc70379ff3de727ad2e19882082c40a4780c72ae86e21decd15a8df1e202f0 (from https://pypi.org/simple/asap3/), version: 3.10.10 2021-07-14T04:38:49,168 Found link https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 (from https://pypi.org/simple/asap3/), version: 3.11.3 2021-07-14T04:38:49,168 Found link https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a (from https://pypi.org/simple/asap3/), version: 3.11.5 2021-07-14T04:38:49,168 Found link https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 (from https://pypi.org/simple/asap3/), version: 3.11.6 2021-07-14T04:38:49,169 Found link https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b (from https://pypi.org/simple/asap3/), version: 3.11.8 2021-07-14T04:38:49,169 Found link https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce (from https://pypi.org/simple/asap3/), version: 3.11.9 2021-07-14T04:38:49,169 Found link https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 (from https://pypi.org/simple/asap3/), version: 3.11.10 2021-07-14T04:38:49,169 Found link https://files.pythonhosted.org/packages/3a/52/77063f553b0ded38f99f97c06ee7c81cc9bfeda82b571bdcb25957f80b04/asap3-3.12.1.tar.gz#sha256=6852d7b3f668b8f740f1be7a0b8ead6b831cb1c381b02448e3e9a578d9efb182 (from https://pypi.org/simple/asap3/), version: 3.12.1 2021-07-14T04:38:49,170 Found link https://files.pythonhosted.org/packages/dd/fc/d1953b172e106f00e1cc19c0f830746cb2dec3d1cdeb5ad0ce4347f5a4d9/asap3-3.12.2.tar.gz#sha256=b6c03c790ba4c9f0d231659078c26ce8193fa21314bf2fe4adaa7899d5cd9dbe (from https://pypi.org/simple/asap3/), version: 3.12.2 2021-07-14T04:38:49,170 Found link https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 (from https://pypi.org/simple/asap3/), version: 3.12.3 2021-07-14T04:38:49,170 Found link https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 (from https://pypi.org/simple/asap3/), version: 3.12.7 2021-07-14T04:38:49,170 Found link https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 (from https://pypi.org/simple/asap3/), version: 3.12.8 2021-07-14T04:38:49,171 Skipping link: not a file: https://pypi.org/simple/asap3/ 2021-07-14T04:38:49,191 Given no hashes to check 1 links for project 'asap3': discarding no candidates 2021-07-14T04:38:49,210 Collecting asap3==3.11.3 2021-07-14T04:38:49,212 Created temporary directory: /tmp/pip-unpack-omzrx_j8 2021-07-14T04:38:49,263 Downloading asap3-3.11.3.tar.gz (801 kB) 2021-07-14T04:38:50,417 Added asap3==3.11.3 from https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 to build tracker '/tmp/pip-req-tracker-olv0lfuc' 2021-07-14T04:38:50,418 Running setup.py (path:/tmp/pip-wheel-xq28yb6i/asap3_2140b8645734436e809c5a3c988b2a06/setup.py) egg_info for package asap3 2021-07-14T04:38:50,419 Created temporary directory: /tmp/pip-pip-egg-info-xfw4v5pz 2021-07-14T04:38:50,420 Running command python setup.py egg_info 2021-07-14T04:38:51,838 Asap version number: 3.11.3 2021-07-14T04:38:51,839 customize-local.py not found - this is OK. 2021-07-14T04:38:51,839 customize-piwheels31.py not found - this is OK. 2021-07-14T04:38:51,839 Reading customization from customize.py 2021-07-14T04:38:51,839 Recording version info into VersionInfo_autogen 2021-07-14T04:38:51,840 CC = arm-linux-gnueabihf-gcc -pthread 2021-07-14T04:38:51,840 CFLAGS = -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 2021-07-14T04:38:51,840 Identifying source files 2021-07-14T04:38:51,840 Identifying Python submodules 2021-07-14T04:38:51,840 running egg_info 2021-07-14T04:38:51,840 creating /tmp/pip-pip-egg-info-xfw4v5pz/asap3.egg-info 2021-07-14T04:38:51,842 writing /tmp/pip-pip-egg-info-xfw4v5pz/asap3.egg-info/PKG-INFO 2021-07-14T04:38:51,844 writing dependency_links to /tmp/pip-pip-egg-info-xfw4v5pz/asap3.egg-info/dependency_links.txt 2021-07-14T04:38:51,846 writing top-level names to /tmp/pip-pip-egg-info-xfw4v5pz/asap3.egg-info/top_level.txt 2021-07-14T04:38:51,848 writing manifest file '/tmp/pip-pip-egg-info-xfw4v5pz/asap3.egg-info/SOURCES.txt' 2021-07-14T04:38:52,005 reading manifest file '/tmp/pip-pip-egg-info-xfw4v5pz/asap3.egg-info/SOURCES.txt' 2021-07-14T04:38:52,007 reading manifest template 'MANIFEST.in' 2021-07-14T04:38:52,066 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T04:38:52,067 adding license file 'LICENSE' 2021-07-14T04:38:52,067 adding license file 'LICENSE.LESSER' 2021-07-14T04:38:52,088 writing manifest file '/tmp/pip-pip-egg-info-xfw4v5pz/asap3.egg-info/SOURCES.txt' 2021-07-14T04:38:52,189 Source in /tmp/pip-wheel-xq28yb6i/asap3_2140b8645734436e809c5a3c988b2a06 has version 3.11.3, which satisfies requirement asap3==3.11.3 from https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 2021-07-14T04:38:52,190 Removed asap3==3.11.3 from https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 from build tracker '/tmp/pip-req-tracker-olv0lfuc' 2021-07-14T04:38:52,194 Created temporary directory: /tmp/pip-unpack-gekrumkk 2021-07-14T04:38:52,195 Building wheels for collected packages: asap3 2021-07-14T04:38:52,198 Created temporary directory: /tmp/pip-wheel-51mgkytd 2021-07-14T04:38:52,199 Building wheel for asap3 (setup.py): started 2021-07-14T04:38:52,199 Destination directory: /tmp/pip-wheel-51mgkytd 2021-07-14T04:38:52,199 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xq28yb6i/asap3_2140b8645734436e809c5a3c988b2a06/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xq28yb6i/asap3_2140b8645734436e809c5a3c988b2a06/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-51mgkytd 2021-07-14T04:38:53,389 Asap version number: 3.11.3 2021-07-14T04:38:53,390 customize-local.py not found - this is OK. 2021-07-14T04:38:53,390 customize-piwheels31.py not found - this is OK. 2021-07-14T04:38:53,390 Reading customization from customize.py 2021-07-14T04:38:53,393 Identifying source files 2021-07-14T04:38:53,396 Identifying Python submodules 2021-07-14T04:38:53,562 running bdist_wheel 2021-07-14T04:38:53,565 running build 2021-07-14T04:38:53,565 running build_py 2021-07-14T04:38:53,697 creating build 2021-07-14T04:38:53,698 creating build/lib.linux-armv7l-3.9 2021-07-14T04:38:53,698 creating build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,700 copying Python/asap3/constraints.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,702 copying Python/asap3/timing.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,704 copying Python/asap3/__init__.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,706 copying Python/asap3/version.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,707 copying Python/asap3/fixepydoc.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,709 copying Python/asap3/EMT2011_py.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,711 copying Python/asap3/memory.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,713 copying Python/asap3/testtools.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,715 copying Python/asap3/EMT2013Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,717 copying Python/asap3/EMT2011Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,719 copying Python/asap3/mpi.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,720 copying Python/asap3/GuptaParameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T04:38:53,723 creating build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,724 copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,726 copying Python/asap3/Tools/Timing.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,728 copying Python/asap3/Tools/niflheim.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,730 copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,732 copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,735 copying Python/asap3/Tools/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,736 copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,738 copying Python/asap3/Tools/ElasticConstants.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,740 copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,742 copying Python/asap3/Tools/MaterialProperties.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T04:38:53,746 creating build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,747 copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,749 copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,752 copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,753 copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,756 copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,758 copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,760 copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,763 copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,767 copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,769 copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,770 copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T04:38:53,783 creating build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T04:38:53,784 copying Python/asap3/setup/displacementfield.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T04:38:53,787 copying Python/asap3/setup/multidislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T04:38:53,789 copying Python/asap3/setup/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T04:38:53,791 copying Python/asap3/setup/dislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T04:38:53,794 copying Python/asap3/setup/VelocityDistribution.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T04:38:53,797 creating build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,798 copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,800 copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,802 copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,806 copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,807 copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,809 copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,811 copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,813 copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,815 copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T04:38:53,819 creating build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,819 copying Python/asap3/analysis/findcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,822 copying Python/asap3/analysis/localstructure.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,824 copying Python/asap3/analysis/clusterposition.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,826 copying Python/asap3/analysis/particle.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,828 copying Python/asap3/analysis/__init__.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,830 copying Python/asap3/analysis/ptm.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,832 copying Python/asap3/analysis/cutcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,834 copying Python/asap3/analysis/rdf.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,837 copying Python/asap3/analysis/averagepositions.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T04:38:53,840 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T04:38:53,840 copying Python/asap3/MonteCarlo/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T04:38:53,843 copying Python/asap3/MonteCarlo/Basin.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T04:38:53,845 copying Python/asap3/MonteCarlo/Start.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T04:38:53,846 copying Python/asap3/MonteCarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T04:38:53,848 copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T04:38:53,850 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T04:38:53,851 copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T04:38:53,854 copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T04:38:53,856 copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T04:38:53,859 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T04:38:53,859 copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T04:38:53,862 copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T04:38:53,864 copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T04:38:53,866 creating build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T04:38:53,867 copying Python/asap3/io/trajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T04:38:53,870 copying Python/asap3/io/cpu_setup.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T04:38:53,871 copying Python/asap3/io/ReadOldFiles.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T04:38:53,873 copying Python/asap3/io/__init__.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T04:38:53,875 copying Python/asap3/io/bundletrajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T04:38:53,879 creating build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T04:38:53,880 copying Python/asap3/optimize/fire.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T04:38:53,883 copying Python/asap3/optimize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T04:38:53,884 copying Python/asap3/optimize/mdmin.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T04:38:53,887 copying Python/asap3/optimize/optimize.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T04:38:53,890 creating build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,891 copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,894 copying Python/asap3/Internal/checkversion.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,896 copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,899 copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,902 copying Python/asap3/Internal/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,903 copying Python/asap3/Internal/Subject.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,905 copying Python/asap3/Internal/Collector.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,908 copying Python/asap3/Internal/EMTParameters.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,910 copying Python/asap3/Internal/CheckArray.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,912 copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,915 copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,916 copying Python/asap3/Internal/ListOfElements.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,918 copying Python/asap3/Internal/Builtins.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,920 copying Python/asap3/Internal/Threads.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T04:38:53,923 creating build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T04:38:53,924 copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T04:38:53,927 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,928 copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,930 copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,932 copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,935 copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,938 copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,941 copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,943 copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,945 copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,947 copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T04:38:53,949 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T04:38:53,950 copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T04:38:53,953 copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T04:38:53,955 copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T04:38:53,957 copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T04:38:53,959 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T04:38:53,960 copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T04:38:53,963 copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T04:38:53,965 copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T04:38:53,969 creating build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:53,970 copying Python/asap3/md/velocitydistribution.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:53,972 copying Python/asap3/md/nvtberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:53,974 copying Python/asap3/md/md.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:53,976 copying Python/asap3/md/npt.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:53,978 copying Python/asap3/md/__init__.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:53,979 copying Python/asap3/md/nptberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:53,981 copying Python/asap3/md/langevin.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:53,984 copying Python/asap3/md/verlet.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:53,985 copying Python/asap3/md/verlet_fast.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T04:38:54,002 running build_ext 2021-07-14T04:38:54,007 building '_asap_p3' extension 2021-07-14T04:38:54,009 creating build/temp.linux-armv7l-3.9 2021-07-14T04:38:54,010 creating build/temp.linux-armv7l-3.9/Basics 2021-07-14T04:38:54,011 creating build/temp.linux-armv7l-3.9/Brenner 2021-07-14T04:38:54,012 creating build/temp.linux-armv7l-3.9/Interface 2021-07-14T04:38:54,014 creating build/temp.linux-armv7l-3.9/PTM 2021-07-14T04:38:54,015 creating build/temp.linux-armv7l-3.9/PTM/qcprot 2021-07-14T04:38:54,015 creating build/temp.linux-armv7l-3.9/PTM/voronoi 2021-07-14T04:38:54,016 creating build/temp.linux-armv7l-3.9/Potentials 2021-07-14T04:38:54,017 creating build/temp.linux-armv7l-3.9/Tools 2021-07-14T04:38:54,018 creating build/temp.linux-armv7l-3.9/VersionInfo_autogen 2021-07-14T04:38:54,018 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/AsapObject.cpp -o build/temp.linux-armv7l-3.9/Basics/AsapObject.o 2021-07-14T04:38:55,041 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Debug.cpp -o build/temp.linux-armv7l-3.9/Basics/Debug.o 2021-07-14T04:38:56,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/DynamicAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o 2021-07-14T04:38:59,040 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Exception.cpp -o build/temp.linux-armv7l-3.9/Basics/Exception.o 2021-07-14T04:39:01,209 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImageAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o 2021-07-14T04:39:02,792 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:02,793 from Basics/ImageAtoms.h:31, 2021-07-14T04:39:02,793 from Basics/ImageAtoms.cpp:27: 2021-07-14T04:39:02,793 Basics/ImageAtoms.cpp: In destructor ‘virtual AsapNS::ImageAtoms::~ImageAtoms()’: 2021-07-14T04:39:02,794 Basics/Exception.h:158:5: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 2021-07-14T04:39:02,794 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T04:39:02,794 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:02,794 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T04:39:02,794 52 | ASSERT(refcount == 0); 2021-07-14T04:39:02,794 | ^~~~~~ 2021-07-14T04:39:02,794 Basics/Exception.h:158:5: note: in C++11 destructors default to ‘noexcept’ 2021-07-14T04:39:02,795 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T04:39:02,795 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:02,795 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T04:39:02,795 52 | ASSERT(refcount == 0); 2021-07-14T04:39:02,795 | ^~~~~~ 2021-07-14T04:39:02,795 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T04:39:02,796 Basics/ImageAtoms.cpp:82:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,796 82 | if (pos.capacity() < nTot) 2021-07-14T04:39:02,796 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T04:39:02,796 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:02,796 from Basics/ImageAtoms.h:31, 2021-07-14T04:39:02,796 from Basics/ImageAtoms.cpp:27: 2021-07-14T04:39:02,796 Basics/ImageAtoms.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,796 84 | ASSERT(allpositions.size() >= nTot); 2021-07-14T04:39:02,797 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T04:39:02,797 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:02,797 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:02,797 | ^~ 2021-07-14T04:39:02,800 Basics/ImageAtoms.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,800 86 | ASSERT(pos.size() == nTot); 2021-07-14T04:39:02,800 | ~~~~~~~~~~~^~~~~~~ 2021-07-14T04:39:02,801 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:02,801 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:02,801 | ^~ 2021-07-14T04:39:02,801 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T04:39:02,801 Basics/ImageAtoms.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,801 95 | ASSERT(allpositions.size() >= n); 2021-07-14T04:39:02,801 | ~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T04:39:02,802 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:02,802 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:02,802 | ^~ 2021-07-14T04:39:02,802 Basics/ImageAtoms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,802 97 | if (pos.capacity() < n) 2021-07-14T04:39:02,802 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T04:39:02,822 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:02,822 from Basics/ImageAtoms.h:31, 2021-07-14T04:39:02,822 from Basics/ImageAtoms.cpp:27: 2021-07-14T04:39:02,822 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::make_images(double)’: 2021-07-14T04:39:02,823 Basics/ImageAtoms.cpp:170:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,823 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); 2021-07-14T04:39:02,823 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:02,823 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:02,823 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:02,823 | ^~ 2021-07-14T04:39:02,826 Basics/ImageAtoms.cpp:221:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,826 221 | if (allpositions.capacity() < nSize) 2021-07-14T04:39:02,826 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T04:39:02,827 Basics/ImageAtoms.cpp:223:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,827 223 | if (allnumbers.capacity() < nSize) 2021-07-14T04:39:02,827 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T04:39:02,828 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:02,828 from Basics/ImageAtoms.h:31, 2021-07-14T04:39:02,828 from Basics/ImageAtoms.cpp:27: 2021-07-14T04:39:02,828 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::update_images()’: 2021-07-14T04:39:02,829 Basics/ImageAtoms.cpp:238:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,829 238 | ASSERT(allpositions.size() <= nSize); 2021-07-14T04:39:02,829 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:39:02,829 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:02,829 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:02,829 | ^~ 2021-07-14T04:39:02,829 Basics/ImageAtoms.cpp:241:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:02,830 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); 2021-07-14T04:39:02,830 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:02,830 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:02,830 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:02,830 | ^~ 2021-07-14T04:39:05,296 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImagePotential.cpp -o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o 2021-07-14T04:39:06,883 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::Vec]’: 2021-07-14T04:39:06,883 Basics/ImagePotential.cpp:93:38: required from here 2021-07-14T04:39:06,883 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:06,883 139 | for (int i = 0; i < orig_map.size(); i++) 2021-07-14T04:39:06,884 | ~~^~~~~~~~~~~~~~~~~ 2021-07-14T04:39:06,891 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::SymTensor]’: 2021-07-14T04:39:06,891 Basics/ImagePotential.cpp:118:45: required from here 2021-07-14T04:39:06,891 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:08,387 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Langevin.cpp -o build/temp.linux-armv7l-3.9/Basics/Langevin.o 2021-07-14T04:39:10,939 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Matrix3x3.cpp -o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o 2021-07-14T04:39:12,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MolecularDynamics.cpp -o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o 2021-07-14T04:39:13,535 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:13,536 from Basics/MolecularDynamics.h:30, 2021-07-14T04:39:13,536 from Basics/MolecularDynamics.cpp:27: 2021-07-14T04:39:13,536 Basics/MolecularDynamics.cpp: In member function ‘bool AsapNS::MolecularDynamics::CallObservers(PyObject*)’: 2021-07-14T04:39:13,536 Basics/MolecularDynamics.cpp:238:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<_object*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:13,536 238 | ASSERT(n == obs_kwargs.size()); 2021-07-14T04:39:13,536 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:13,537 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:13,537 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:13,537 | ^~ 2021-07-14T04:39:14,803 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MonteCarloAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o 2021-07-14T04:39:17,320 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborCellLocator.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o 2021-07-14T04:39:19,021 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:19,022 from Basics/NeighborCellLocator.h:35, 2021-07-14T04:39:19,022 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T04:39:19,022 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::MakeList()’: 2021-07-14T04:39:19,022 Basics/NeighborCellLocator.cpp:124:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,022 124 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T04:39:19,023 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T04:39:19,023 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:19,023 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:19,023 | ^~ 2021-07-14T04:39:19,034 Basics/NeighborCellLocator.cpp:309:42: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,035 309 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) 2021-07-14T04:39:19,035 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T04:39:19,035 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:19,035 from Basics/NeighborCellLocator.h:35, 2021-07-14T04:39:19,035 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T04:39:19,035 Basics/NeighborCellLocator.cpp:320:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,036 320 | ASSERT(cells.size() == nTotalCells[3]); 2021-07-14T04:39:19,036 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T04:39:19,036 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:19,036 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:19,036 | ^~ 2021-07-14T04:39:19,036 Basics/NeighborCellLocator.cpp:321:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:19,036 321 | for (int i = 0; i < cells.size(); i++) 2021-07-14T04:39:19,037 | ~~^~~~~~~~~~~~~~ 2021-07-14T04:39:19,037 Basics/NeighborCellLocator.cpp:357:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:19,037 357 | for (int i = 0; i < cells.size(); i++) 2021-07-14T04:39:19,038 | ~~^~~~~~~~~~~~~~ 2021-07-14T04:39:19,054 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::MakeNeighboringCellLists()’: 2021-07-14T04:39:19,054 Basics/NeighborCellLocator.cpp:472:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:19,054 472 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T04:39:19,055 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:19,055 Basics/NeighborCellLocator.cpp:475:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:19,055 475 | for (int i = 0; i < cells.size(); i++) 2021-07-14T04:39:19,055 | ~~^~~~~~~~~~~~~~ 2021-07-14T04:39:19,109 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:19,109 from Basics/NeighborCellLocator.h:35, 2021-07-14T04:39:19,109 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T04:39:19,110 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::ScaleAndNormalizePositions()’: 2021-07-14T04:39:19,110 Basics/NeighborCellLocator.cpp:929:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,110 929 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T04:39:19,110 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T04:39:19,110 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:19,110 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:19,111 | ^~ 2021-07-14T04:39:19,111 Basics/NeighborCellLocator.cpp:936:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,111 936 | if (wrappedPositions.capacity() < spsz) 2021-07-14T04:39:19,111 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T04:39:19,111 Basics/NeighborCellLocator.cpp:939:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,111 939 | if (offsetPositions.capacity() < spsz) 2021-07-14T04:39:19,111 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T04:39:19,113 Basics/NeighborCellLocator.cpp:976:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,113 976 | if (wrappedPositions.capacity() < spsz) 2021-07-14T04:39:19,113 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T04:39:19,113 Basics/NeighborCellLocator.cpp:979:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,113 979 | if (scaledOffsetPositions.capacity() < spsz) 2021-07-14T04:39:19,113 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T04:39:19,126 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:19,126 from Basics/NeighborCellLocator.h:35, 2021-07-14T04:39:19,126 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T04:39:19,127 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::RenormalizePositions()’: 2021-07-14T04:39:19,127 Basics/NeighborCellLocator.cpp:1101:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,127 1101 | ASSERT(referencePositions.size() == nAtoms); 2021-07-14T04:39:19,127 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T04:39:19,127 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:19,127 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:19,127 | ^~ 2021-07-14T04:39:19,128 Basics/NeighborCellLocator.cpp:1102:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,128 1102 | ASSERT(offsetPositions.size() == nAllAtoms); 2021-07-14T04:39:19,128 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T04:39:19,128 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:19,128 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:19,128 | ^~ 2021-07-14T04:39:19,130 Basics/NeighborCellLocator.cpp:1119:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,131 1119 | ASSERT(wrappedPositions.size() == nAllAtoms); 2021-07-14T04:39:19,131 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T04:39:19,131 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:19,131 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:19,131 | ^~ 2021-07-14T04:39:19,146 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::print_info(int)’: 2021-07-14T04:39:19,146 Basics/NeighborCellLocator.cpp:1250:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,147 1250 | if (referencePositions.size() > n) 2021-07-14T04:39:19,147 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T04:39:19,148 Basics/NeighborCellLocator.cpp:1252:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,148 1252 | if (wrappedPositions.size() > n) 2021-07-14T04:39:19,148 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T04:39:19,149 Basics/NeighborCellLocator.cpp:1254:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,149 1254 | if (scaledPositions.size() > n) 2021-07-14T04:39:19,149 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T04:39:19,150 Basics/NeighborCellLocator.cpp:1256:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,151 1256 | if (offsetPositions.size() > n) 2021-07-14T04:39:19,151 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T04:39:19,151 Basics/NeighborCellLocator.cpp:1258:36: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,152 1258 | if (scaledOffsetPositions.size() > n) 2021-07-14T04:39:19,152 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T04:39:19,157 Basics/NeighborCellLocator.cpp: In member function ‘virtual long int AsapNS::NeighborCellLocator::PrintMemory() const’: 2021-07-14T04:39:19,157 Basics/NeighborCellLocator.cpp:1290:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:19,157 1290 | if (i->size() > longest) 2021-07-14T04:39:19,158 | ~~~~~~~~~~^~~~~~~~~ 2021-07-14T04:39:25,747 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList.o 2021-07-14T04:39:27,448 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::MakeList()’: 2021-07-14T04:39:27,449 Basics/NeighborList.cpp:126:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:27,449 126 | if (nAllAtoms != nbList.size()) 2021-07-14T04:39:27,449 | ~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T04:39:27,449 Basics/NeighborList.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:27,449 128 | if (fulllists && (nAllAtoms != complNbList.size())) 2021-07-14T04:39:27,450 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:27,470 Basics/NeighborList.cpp:200:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:27,471 200 | if (nbList[i].capacity() < reservedLength) 2021-07-14T04:39:27,471 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T04:39:27,471 Basics/NeighborList.cpp:210:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:27,472 210 | if (complNbList[i].capacity() < reservedLength) 2021-07-14T04:39:27,472 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T04:39:27,479 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T04:39:27,479 Basics/NeighborList.cpp:357:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:27,479 357 | if (size < nbList[a1].size()) 2021-07-14T04:39:27,479 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:27,489 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetFullNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T04:39:27,489 Basics/NeighborList.cpp:477:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:27,489 477 | if (size < nbList[a1].size() + complNbList[a1].size()) 2021-07-14T04:39:27,490 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:27,526 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::RemakeLists(const std::set&, std::set&)’: 2021-07-14T04:39:27,527 Basics/NeighborList.cpp:624:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T04:39:27,527 624 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != complNbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T04:39:27,530 Basics/NeighborList.cpp:654:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T04:39:27,530 654 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != nbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T04:39:27,547 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::CheckFullListConsistency(std::string, bool)’: 2021-07-14T04:39:27,547 Basics/NeighborList.cpp:756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T04:39:27,547 756 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T04:39:27,548 Basics/NeighborList.cpp:758:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T04:39:27,548 758 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T04:39:27,560 Basics/NeighborList.cpp:795:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T04:39:27,560 795 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T04:39:27,561 Basics/NeighborList.cpp:797:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T04:39:27,562 797 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T04:39:27,572 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::print_info(int)’: 2021-07-14T04:39:27,573 Basics/NeighborList.cpp:834:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:27,573 834 | for (int i = 0; i < nbList[n].size(); i++) 2021-07-14T04:39:27,573 | ~~^~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:27,575 Basics/NeighborList.cpp:840:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:27,575 840 | for (int i = 0; i < complNbList[n].size(); i++) 2021-07-14T04:39:27,575 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:27,586 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::update_translationvectors()’: 2021-07-14T04:39:27,586 Basics/NeighborList.cpp:910:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:27,586 910 | for (int i = 0; i < translationTable.size(); i++) 2021-07-14T04:39:27,586 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:29,169 In file included from /usr/include/c++/10/vector:72, 2021-07-14T04:39:29,169 from Basics/AtomsBasis.h:33, 2021-07-14T04:39:29,169 from Basics/Atoms.h:36, 2021-07-14T04:39:29,170 from Basics/NeighborLocator.h:41, 2021-07-14T04:39:29,170 from Basics/NeighborList.h:37, 2021-07-14T04:39:29,170 from Basics/NeighborList.cpp:29: 2021-07-14T04:39:29,170 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T04:39:29,170 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:39:29,170 721 | vector<_Tp, _Alloc>:: 2021-07-14T04:39:29,170 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:29,171 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:29,171 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:29,263 In file included from /usr/include/c++/10/vector:67, 2021-07-14T04:39:29,264 from Basics/AtomsBasis.h:33, 2021-07-14T04:39:29,264 from Basics/Atoms.h:36, 2021-07-14T04:39:29,264 from Basics/NeighborLocator.h:41, 2021-07-14T04:39:29,264 from Basics/NeighborList.h:37, 2021-07-14T04:39:29,264 from Basics/NeighborList.cpp:29: 2021-07-14T04:39:29,264 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T04:39:29,264 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:39:29,264 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T04:39:29,265 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:29,265 1666 | std::__iterator_category(__first)); 2021-07-14T04:39:29,265 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:29,265 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:29,281 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T04:39:29,281 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:39:29,281 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T04:39:29,281 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:29,281 1666 | std::__iterator_category(__first)); 2021-07-14T04:39:29,282 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:29,282 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:32,168 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList2013.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o 2021-07-14T04:39:33,833 Basics/NeighborList2013.cpp: In member function ‘virtual int AsapNS::NeighborList2013::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T04:39:33,834 Basics/NeighborList2013.cpp:33:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:39:33,834 33 | if (size < nbList[a1].size()) 2021-07-14T04:39:33,834 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:34,476 In file included from /usr/include/c++/10/vector:72, 2021-07-14T04:39:34,476 from Basics/AtomsBasis.h:33, 2021-07-14T04:39:34,477 from Basics/Atoms.h:36, 2021-07-14T04:39:34,477 from Basics/NeighborLocator.h:41, 2021-07-14T04:39:34,477 from Basics/NeighborList.h:37, 2021-07-14T04:39:34,477 from Basics/NeighborList2013.h:11, 2021-07-14T04:39:34,477 from Basics/NeighborList2013.cpp:8: 2021-07-14T04:39:34,477 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T04:39:34,477 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:39:34,477 721 | vector<_Tp, _Alloc>:: 2021-07-14T04:39:34,477 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:34,478 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:34,478 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:34,571 In file included from /usr/include/c++/10/vector:67, 2021-07-14T04:39:34,571 from Basics/AtomsBasis.h:33, 2021-07-14T04:39:34,572 from Basics/Atoms.h:36, 2021-07-14T04:39:34,572 from Basics/NeighborLocator.h:41, 2021-07-14T04:39:34,572 from Basics/NeighborList.h:37, 2021-07-14T04:39:34,572 from Basics/NeighborList2013.h:11, 2021-07-14T04:39:34,572 from Basics/NeighborList2013.cpp:8: 2021-07-14T04:39:34,572 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T04:39:34,572 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:39:34,572 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T04:39:34,573 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:34,573 1666 | std::__iterator_category(__first)); 2021-07-14T04:39:34,573 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:34,573 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:34,590 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T04:39:34,590 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:39:34,590 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T04:39:34,590 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:34,591 1666 | std::__iterator_category(__first)); 2021-07-14T04:39:34,591 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:34,591 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:35,133 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NormalAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o 2021-07-14T04:39:36,663 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_numbers(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T04:39:36,663 Basics/NormalAtoms.cpp:410:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:36,663 410 | if (numbers.size() != nAtoms+nGhosts) 2021-07-14T04:39:36,664 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T04:39:36,667 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_positions(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T04:39:36,668 Basics/NormalAtoms.cpp:455:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:36,668 455 | bool pos_resized = (positions.size() != nAtoms+nGhosts); 2021-07-14T04:39:36,668 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T04:39:36,672 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:36,672 from Basics/NormalAtoms.cpp:27: 2021-07-14T04:39:36,672 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T04:39:36,672 Basics/NormalAtoms.cpp:513:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:36,672 513 | ASSERT(positions.size() == nAtoms + nGhosts); 2021-07-14T04:39:36,673 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:36,673 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:36,673 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:36,673 | ^~ 2021-07-14T04:39:36,673 Basics/NormalAtoms.cpp:514:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:36,673 514 | if (pos.capacity() < nAtoms + nGhosts) 2021-07-14T04:39:36,674 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:36,678 Basics/NormalAtoms.cpp:520:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T04:39:36,678 520 | if (pos.capacity() < nAtoms) 2021-07-14T04:39:36,678 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:39:36,679 In file included from Basics/AsapPython.h:44, 2021-07-14T04:39:36,679 from Basics/NormalAtoms.cpp:27: 2021-07-14T04:39:36,679 Basics/NormalAtoms.cpp:523:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T04:39:36,679 523 | ASSERT(pos.size() == nAtoms); 2021-07-14T04:39:36,679 | ~~~~~~~~~~~^~~~~~~~~ 2021-07-14T04:39:36,679 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:36,680 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:36,680 | ^~ 2021-07-14T04:39:36,680 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T04:39:36,680 Basics/NormalAtoms.cpp:535:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:36,680 535 | ASSERT(positions.size() >= n); 2021-07-14T04:39:36,680 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T04:39:36,680 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:39:36,681 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:39:36,681 | ^~ 2021-07-14T04:39:36,681 Basics/NormalAtoms.cpp:537:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:39:36,681 537 | if (pos.capacity() < n) 2021-07-14T04:39:36,681 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T04:39:38,205 In file included from /usr/include/c++/10/vector:72, 2021-07-14T04:39:38,206 from Basics/AtomsBasis.h:33, 2021-07-14T04:39:38,206 from Basics/NormalAtoms.h:33, 2021-07-14T04:39:38,206 from Basics/NormalAtoms.cpp:29: 2021-07-14T04:39:38,206 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T04:39:38,206 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:39:38,206 721 | vector<_Tp, _Alloc>:: 2021-07-14T04:39:38,206 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:38,207 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:38,207 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:38,979 In file included from /usr/include/c++/10/vector:67, 2021-07-14T04:39:38,979 from Basics/AtomsBasis.h:33, 2021-07-14T04:39:38,980 from Basics/NormalAtoms.h:33, 2021-07-14T04:39:38,980 from Basics/NormalAtoms.cpp:29: 2021-07-14T04:39:38,980 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T04:39:38,980 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:39:38,980 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T04:39:38,980 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:38,980 1666 | std::__iterator_category(__first)); 2021-07-14T04:39:38,980 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:38,981 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:38,981 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:39:38,981 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T04:39:38,981 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:38,981 1666 | std::__iterator_category(__first)); 2021-07-14T04:39:38,981 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:39:38,981 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:39:39,982 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/RandomNumbers.cpp -o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o 2021-07-14T04:39:41,768 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Timing.cpp -o build/temp.linux-armv7l-3.9/Basics/Timing.o 2021-07-14T04:39:43,413 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Vec.cpp -o build/temp.linux-armv7l-3.9/Basics/Vec.o 2021-07-14T04:39:44,502 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/VelocityVerlet.cpp -o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o 2021-07-14T04:39:46,793 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/BrennerPotential.cpp -o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o 2021-07-14T04:39:49,947 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/bcuint.cpp -o build/temp.linux-armv7l-3.9/Brenner/bcuint.o 2021-07-14T04:39:52,382 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/caguts.cpp -o build/temp.linux-armv7l-3.9/Brenner/caguts.o 2021-07-14T04:39:55,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/expand.cpp -o build/temp.linux-armv7l-3.9/Brenner/expand.o 2021-07-14T04:39:56,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/inter2d_iv.cpp -o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o 2021-07-14T04:39:56,550 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/mtable.cpp -o build/temp.linux-armv7l-3.9/Brenner/mtable.o 2021-07-14T04:39:59,018 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/pibond.cpp -o build/temp.linux-armv7l-3.9/Brenner/pibond.o 2021-07-14T04:40:03,433 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radic.cpp -o build/temp.linux-armv7l-3.9/Brenner/radic.o 2021-07-14T04:40:05,830 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radicdata.cpp -o build/temp.linux-armv7l-3.9/Brenner/radicdata.o 2021-07-14T04:40:06,288 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/sili_germ.cpp -o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o 2021-07-14T04:40:08,837 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/spgch.cpp -o build/temp.linux-armv7l-3.9/Brenner/spgch.o 2021-07-14T04:40:10,791 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/AsapSerial.cpp -o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o 2021-07-14T04:40:12,590 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/DynamicsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o 2021-07-14T04:40:14,071 In file included from Basics/AsapPython.h:44, 2021-07-14T04:40:14,072 from Interface/DynamicsInterface.h:29, 2021-07-14T04:40:14,072 from Interface/DynamicsInterface.cpp:26: 2021-07-14T04:40:14,072 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T04:40:14,072 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:14,072 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T04:40:14,073 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:14,073 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:14,073 | ^~ 2021-07-14T04:40:14,073 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T04:40:14,074 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:14,074 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T04:40:14,074 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:14,074 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:14,074 | ^~ 2021-07-14T04:40:14,081 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T04:40:14,082 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:14,082 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T04:40:14,082 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:14,082 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:14,082 | ^~ 2021-07-14T04:40:14,083 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T04:40:14,083 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:14,084 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T04:40:14,084 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:14,084 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:14,084 | ^~ 2021-07-14T04:40:14,094 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T04:40:14,094 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:14,094 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T04:40:14,094 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:14,095 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:14,095 | ^~ 2021-07-14T04:40:14,100 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_VelocityVerletInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:14,100 Interface/DynamicsInterface.cpp:78:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,100 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T04:40:14,100 | ^~~~~~~ 2021-07-14T04:40:14,100 Interface/DynamicsInterface.cpp:78:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,101 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T04:40:14,101 | ^~~~~~ 2021-07-14T04:40:14,101 Interface/DynamicsInterface.cpp:78:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,101 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T04:40:14,101 | ^~~~~~~~~~ 2021-07-14T04:40:14,102 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_LangevinInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:14,102 Interface/DynamicsInterface.cpp:116:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,102 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T04:40:14,102 | ^~~~~~~ 2021-07-14T04:40:14,102 Interface/DynamicsInterface.cpp:116:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,103 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T04:40:14,103 | ^~~~~~ 2021-07-14T04:40:14,103 Interface/DynamicsInterface.cpp:116:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,103 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T04:40:14,103 | ^~~~~~~~~~ 2021-07-14T04:40:14,103 Interface/DynamicsInterface.cpp:116:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,103 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T04:40:14,104 | ^~~~~~~ 2021-07-14T04:40:14,104 Interface/DynamicsInterface.cpp:116:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,104 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T04:40:14,104 | ^~~~~~~ 2021-07-14T04:40:14,104 Interface/DynamicsInterface.cpp:116:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,104 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T04:40:14,104 | ^~~~ 2021-07-14T04:40:14,104 Interface/DynamicsInterface.cpp:116:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,105 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T04:40:14,105 | ^~~~ 2021-07-14T04:40:14,105 Interface/DynamicsInterface.cpp:116:87: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,105 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T04:40:14,105 | ^~~~~~~ 2021-07-14T04:40:14,105 Interface/DynamicsInterface.cpp:116:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,105 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T04:40:14,105 | ^~~~~~ 2021-07-14T04:40:14,106 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DynamicsRun(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:14,106 Interface/DynamicsInterface.cpp:162:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,106 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T04:40:14,106 | ^~~~~~~ 2021-07-14T04:40:14,106 Interface/DynamicsInterface.cpp:162:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,106 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T04:40:14,106 | ^~~~~~~~~~~ 2021-07-14T04:40:14,107 Interface/DynamicsInterface.cpp:162:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,107 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T04:40:14,107 | ^~~~~ 2021-07-14T04:40:14,107 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetScalarConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:14,107 Interface/DynamicsInterface.cpp:190:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,107 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,107 | ^~~~~~ 2021-07-14T04:40:14,108 Interface/DynamicsInterface.cpp:190:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,108 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,108 | ^~~~ 2021-07-14T04:40:14,108 Interface/DynamicsInterface.cpp:190:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,108 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,108 | ^~~~ 2021-07-14T04:40:14,108 Interface/DynamicsInterface.cpp:190:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,108 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,109 | ^~~~~~~ 2021-07-14T04:40:14,109 Interface/DynamicsInterface.cpp:190:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,109 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,109 | ^~~~~~ 2021-07-14T04:40:14,109 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetVectorConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:14,109 Interface/DynamicsInterface.cpp:214:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,110 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,110 | ^~~~~~ 2021-07-14T04:40:14,110 Interface/DynamicsInterface.cpp:214:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,110 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,110 | ^~~~ 2021-07-14T04:40:14,110 Interface/DynamicsInterface.cpp:214:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,110 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,110 | ^~~~ 2021-07-14T04:40:14,111 Interface/DynamicsInterface.cpp:214:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,111 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,111 | ^~~~~~~ 2021-07-14T04:40:14,111 Interface/DynamicsInterface.cpp:214:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,111 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T04:40:14,111 | ^~~~~~ 2021-07-14T04:40:14,111 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvGetRandom(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:14,112 Interface/DynamicsInterface.cpp:251:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:14,112 251 | static char *kwlist[] = {"gaussian", NULL}; 2021-07-14T04:40:14,112 | ^~~~~~~~~~ 2021-07-14T04:40:14,828 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o 2021-07-14T04:40:16,285 In file included from Basics/AsapPython.h:44, 2021-07-14T04:40:16,285 from Interface/EMTParameterProviderInterface.cpp:28: 2021-07-14T04:40:16,285 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T04:40:16,285 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:16,285 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T04:40:16,285 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:16,286 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:16,286 | ^~ 2021-07-14T04:40:16,295 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T04:40:16,295 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:16,296 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T04:40:16,296 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:16,296 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:16,296 | ^~ 2021-07-14T04:40:16,304 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T04:40:16,304 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:16,305 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T04:40:16,305 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:16,305 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:16,305 | ^~ 2021-07-14T04:40:16,315 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T04:40:16,315 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:16,315 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T04:40:16,315 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:16,315 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:16,316 | ^~ 2021-07-14T04:40:16,325 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T04:40:16,325 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:16,326 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T04:40:16,326 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:16,326 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:16,326 | ^~ 2021-07-14T04:40:16,730 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ExceptionInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o 2021-07-14T04:40:18,212 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/NeighborLocatorInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o 2021-07-14T04:40:19,692 In file included from Basics/AsapPython.h:44, 2021-07-14T04:40:19,692 from Interface/NeighborLocatorInterface.cpp:27: 2021-07-14T04:40:19,693 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T04:40:19,693 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:19,693 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T04:40:19,693 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:19,693 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:19,693 | ^~ 2021-07-14T04:40:19,703 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T04:40:19,703 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:19,703 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T04:40:19,703 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:19,703 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:19,704 | ^~ 2021-07-14T04:40:19,711 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T04:40:19,712 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:19,712 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T04:40:19,712 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:19,712 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:19,712 | ^~ 2021-07-14T04:40:19,722 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T04:40:19,723 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:19,723 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T04:40:19,723 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:19,723 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:19,723 | ^~ 2021-07-14T04:40:19,733 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T04:40:19,733 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:19,733 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T04:40:19,733 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:19,733 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:19,734 | ^~ 2021-07-14T04:40:19,933 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborList_Py(PyObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:19,933 Interface/NeighborLocatorInterface.cpp:166:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:19,933 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T04:40:19,933 | ^~~~~~ 2021-07-14T04:40:19,933 Interface/NeighborLocatorInterface.cpp:166:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:19,934 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T04:40:19,934 | ^~~~~~~ 2021-07-14T04:40:19,934 Interface/NeighborLocatorInterface.cpp:166:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:19,934 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T04:40:19,934 | ^~~~~~~~~~~~~ 2021-07-14T04:40:19,934 Interface/NeighborLocatorInterface.cpp:166:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:19,934 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T04:40:19,935 | ^~~~~~ 2021-07-14T04:40:19,935 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborCellLocator_Serial(PyObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:19,936 Interface/NeighborLocatorInterface.cpp:218:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:19,936 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T04:40:19,936 | ^~~~~~ 2021-07-14T04:40:19,936 Interface/NeighborLocatorInterface.cpp:218:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:19,936 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T04:40:19,936 | ^~~~~~~ 2021-07-14T04:40:19,937 Interface/NeighborLocatorInterface.cpp:218:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:19,937 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T04:40:19,937 | ^~~~~~~~~~~~~ 2021-07-14T04:40:19,970 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNB(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:19,970 Interface/NeighborLocatorInterface.cpp:395:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:19,970 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T04:40:19,970 | ^~~ 2021-07-14T04:40:19,970 Interface/NeighborLocatorInterface.cpp:395:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:19,971 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T04:40:19,971 | ^~~~~~ 2021-07-14T04:40:21,982 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/OpenMPInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o 2021-07-14T04:40:23,258 Interface/OpenMPInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_set_num_threads(PyObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:23,258 Interface/OpenMPInterface.cpp:82:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:23,258 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T04:40:23,258 | ^~~ 2021-07-14T04:40:23,259 Interface/OpenMPInterface.cpp:82:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:23,259 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T04:40:23,259 | ^~~~~~~~~~~~ 2021-07-14T04:40:23,499 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PTMInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o 2021-07-14T04:40:25,104 Interface/PTMInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_PTMall(PyObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:25,104 Interface/PTMInterface.cpp:99:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:25,104 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T04:40:25,104 | ^~~~~~~ 2021-07-14T04:40:25,105 Interface/PTMInterface.cpp:99:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:25,105 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T04:40:25,105 | ^~~~~~~~ 2021-07-14T04:40:25,105 Interface/PTMInterface.cpp:99:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:25,105 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T04:40:25,105 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:40:25,106 Interface/PTMInterface.cpp:100:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:25,106 100 | "calculate_strains", "quick", 2021-07-14T04:40:25,106 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:40:25,106 Interface/PTMInterface.cpp:100:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:25,106 100 | "calculate_strains", "quick", 2021-07-14T04:40:25,106 | ^~~~~~~ 2021-07-14T04:40:25,107 Interface/PTMInterface.cpp:101:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:25,107 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T04:40:25,107 | ^~~~~~~~~~~~~~~ 2021-07-14T04:40:25,107 Interface/PTMInterface.cpp:101:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:25,107 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T04:40:25,107 | ^~~~~~~~~~~~~~~~~ 2021-07-14T04:40:25,133 In file included from /usr/include/python3.9/Python.h:61, 2021-07-14T04:40:25,133 from Basics/AsapPython.h:38, 2021-07-14T04:40:25,133 from Interface/PTMInterface.h:30, 2021-07-14T04:40:25,133 from Interface/PTMInterface.cpp:1: 2021-07-14T04:40:25,133 Interface/PTMInterface.cpp:303:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:40:25,134 303 | assert(m < indices.size()); 2021-07-14T04:40:25,134 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T04:40:25,134 Interface/PTMInterface.cpp:305:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:40:25,135 305 | assert(idx >= 0 && idx < indices.size()); 2021-07-14T04:40:25,135 | ~~~~^~~~~~~~~~~~~~~~ 2021-07-14T04:40:25,357 Interface/PTMInterface.cpp: At global scope: 2021-07-14T04:40:25,357 Interface/PTMInterface.cpp:11:18: warning: ‘PyObject* error(PyObject*, char*)’ defined but not used [-Wunused-function] 2021-07-14T04:40:25,357 11 | static PyObject* error(PyObject* type, char* msg) 2021-07-14T04:40:25,357 | ^~~~~ 2021-07-14T04:40:26,972 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PotentialInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o 2021-07-14T04:40:28,496 In file included from Basics/AsapPython.h:44, 2021-07-14T04:40:28,497 from Interface/PotentialInterface.cpp:29: 2021-07-14T04:40:28,497 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T04:40:28,497 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:28,497 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T04:40:28,497 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:28,497 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:28,497 | ^~ 2021-07-14T04:40:28,508 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T04:40:28,508 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:28,508 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T04:40:28,509 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:28,509 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:28,509 | ^~ 2021-07-14T04:40:28,518 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T04:40:28,518 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:28,518 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T04:40:28,518 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:28,518 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:28,519 | ^~ 2021-07-14T04:40:28,530 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T04:40:28,530 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:28,530 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T04:40:28,530 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:28,530 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:28,530 | ^~ 2021-07-14T04:40:28,541 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T04:40:28,541 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:28,541 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T04:40:28,542 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:28,542 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:28,542 | ^~ 2021-07-14T04:40:28,799 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,800 Interface/PotentialInterface.cpp:201:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,800 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T04:40:28,800 | ^~~~~~ 2021-07-14T04:40:28,800 Interface/PotentialInterface.cpp:201:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,800 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T04:40:28,800 | ^~~~~~~~~ 2021-07-14T04:40:28,803 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMT2013Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,803 Interface/PotentialInterface.cpp:234:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,803 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T04:40:28,803 | ^~~~~~~~~~~~ 2021-07-14T04:40:28,804 Interface/PotentialInterface.cpp:234:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,804 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T04:40:28,804 | ^~~~~~~~~~~~~~~~~ 2021-07-14T04:40:28,804 Interface/PotentialInterface.cpp:234:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,804 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T04:40:28,804 | ^~~~~~~~~ 2021-07-14T04:40:28,806 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MonteCarloEMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,807 Interface/PotentialInterface.cpp:270:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,807 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T04:40:28,807 | ^~~~~~ 2021-07-14T04:40:28,807 Interface/PotentialInterface.cpp:270:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,807 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T04:40:28,808 | ^~~~~~~~~ 2021-07-14T04:40:28,809 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RGLInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,809 Interface/PotentialInterface.cpp:291:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,810 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T04:40:28,810 | ^~~~~~~~~~ 2021-07-14T04:40:28,810 Interface/PotentialInterface.cpp:291:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,810 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T04:40:28,810 | ^~~ 2021-07-14T04:40:28,811 Interface/PotentialInterface.cpp:291:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,811 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T04:40:28,811 | ^~~ 2021-07-14T04:40:28,811 Interface/PotentialInterface.cpp:291:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,811 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T04:40:28,811 | ^~~ 2021-07-14T04:40:28,812 Interface/PotentialInterface.cpp:291:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,812 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T04:40:28,812 | ^~~~~~ 2021-07-14T04:40:28,812 Interface/PotentialInterface.cpp:291:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,812 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T04:40:28,812 | ^~~~ 2021-07-14T04:40:28,813 Interface/PotentialInterface.cpp:292:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,813 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T04:40:28,813 | ^~~~ 2021-07-14T04:40:28,813 Interface/PotentialInterface.cpp:292:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,813 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T04:40:28,813 | ^~~~ 2021-07-14T04:40:28,813 Interface/PotentialInterface.cpp:292:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,814 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T04:40:28,814 | ^~~~ 2021-07-14T04:40:28,814 Interface/PotentialInterface.cpp:292:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,814 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T04:40:28,814 | ^~~~ 2021-07-14T04:40:28,814 Interface/PotentialInterface.cpp:292:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,815 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T04:40:28,815 | ^~~~ 2021-07-14T04:40:28,815 Interface/PotentialInterface.cpp:292:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,815 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T04:40:28,815 | ^~~~ 2021-07-14T04:40:28,815 Interface/PotentialInterface.cpp:293:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,815 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T04:40:28,816 | ^~~~~ 2021-07-14T04:40:28,816 Interface/PotentialInterface.cpp:293:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,816 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T04:40:28,816 | ^~~~~ 2021-07-14T04:40:28,816 Interface/PotentialInterface.cpp:293:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,816 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T04:40:28,817 | ^~~~~~~~~ 2021-07-14T04:40:28,823 Interface/PotentialInterface.cpp: In function ‘int PyAsap_LennardJonesInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,824 Interface/PotentialInterface.cpp:355:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,824 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T04:40:28,824 | ^~~~~~~~~~~~~ 2021-07-14T04:40:28,824 Interface/PotentialInterface.cpp:355:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,824 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T04:40:28,825 | ^~~~~~~~~~ 2021-07-14T04:40:28,825 Interface/PotentialInterface.cpp:355:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,825 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T04:40:28,825 | ^~~~~~~~~ 2021-07-14T04:40:28,825 Interface/PotentialInterface.cpp:355:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,825 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T04:40:28,826 | ^~~~~~~ 2021-07-14T04:40:28,826 Interface/PotentialInterface.cpp:356:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,826 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T04:40:28,826 | ^~~~~~~~ 2021-07-14T04:40:28,826 Interface/PotentialInterface.cpp:356:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,826 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T04:40:28,826 | ^~~~~~ 2021-07-14T04:40:28,827 Interface/PotentialInterface.cpp:356:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,827 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T04:40:28,827 | ^~~~~~~~~~ 2021-07-14T04:40:28,827 Interface/PotentialInterface.cpp:356:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,827 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T04:40:28,827 | ^~~~~~~~~ 2021-07-14T04:40:28,833 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RahmanStillingerLembergInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,833 Interface/PotentialInterface.cpp:394:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,833 394 | static char *kwlist[] = {"numElements", 2021-07-14T04:40:28,833 | ^~~~~~~~~~~~~ 2021-07-14T04:40:28,834 Interface/PotentialInterface.cpp:395:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,834 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T04:40:28,834 | ^~~~ 2021-07-14T04:40:28,834 Interface/PotentialInterface.cpp:395:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,834 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T04:40:28,834 | ^~~~ 2021-07-14T04:40:28,835 Interface/PotentialInterface.cpp:395:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,835 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T04:40:28,835 | ^~~ 2021-07-14T04:40:28,835 Interface/PotentialInterface.cpp:395:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,835 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T04:40:28,835 | ^~~~ 2021-07-14T04:40:28,836 Interface/PotentialInterface.cpp:395:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,836 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T04:40:28,836 | ^~~~ 2021-07-14T04:40:28,836 Interface/PotentialInterface.cpp:395:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,836 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T04:40:28,836 | ^~~~ 2021-07-14T04:40:28,837 Interface/PotentialInterface.cpp:396:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,837 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T04:40:28,837 | ^~~~ 2021-07-14T04:40:28,837 Interface/PotentialInterface.cpp:396:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,837 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T04:40:28,837 | ^~~~ 2021-07-14T04:40:28,837 Interface/PotentialInterface.cpp:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,838 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T04:40:28,838 | ^~~~ 2021-07-14T04:40:28,838 Interface/PotentialInterface.cpp:396:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,838 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T04:40:28,838 | ^~~~ 2021-07-14T04:40:28,838 Interface/PotentialInterface.cpp:396:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,839 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T04:40:28,839 | ^~~~ 2021-07-14T04:40:28,839 Interface/PotentialInterface.cpp:396:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,839 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T04:40:28,839 | ^~~~ 2021-07-14T04:40:28,839 Interface/PotentialInterface.cpp:397:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,839 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T04:40:28,840 | ^~~~~~~~~~ 2021-07-14T04:40:28,840 Interface/PotentialInterface.cpp:397:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,840 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T04:40:28,840 | ^~~~~~~~ 2021-07-14T04:40:28,840 Interface/PotentialInterface.cpp:397:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,840 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T04:40:28,840 | ^~~~~~ 2021-07-14T04:40:28,841 Interface/PotentialInterface.cpp:397:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,841 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T04:40:28,841 | ^~~~~~~~~ 2021-07-14T04:40:28,845 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterfaceInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,845 Interface/PotentialInterface.cpp:500:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,845 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,846 | ^~~ 2021-07-14T04:40:28,846 Interface/PotentialInterface.cpp:500:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,846 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,846 | ^~~ 2021-07-14T04:40:28,846 Interface/PotentialInterface.cpp:500:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,847 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,847 | ^~~ 2021-07-14T04:40:28,847 Interface/PotentialInterface.cpp:500:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,847 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,847 | ^~~~ 2021-07-14T04:40:28,847 Interface/PotentialInterface.cpp:500:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,848 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,848 | ^~~~ 2021-07-14T04:40:28,848 Interface/PotentialInterface.cpp:500:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,848 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,848 | ^~~~~~~~~ 2021-07-14T04:40:28,848 Interface/PotentialInterface.cpp:501:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,848 501 | "q", "kappa", 2021-07-14T04:40:28,849 | ^~~ 2021-07-14T04:40:28,849 Interface/PotentialInterface.cpp:501:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,849 501 | "q", "kappa", 2021-07-14T04:40:28,849 | ^~~~~~~ 2021-07-14T04:40:28,849 Interface/PotentialInterface.cpp:502:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,849 502 | "D", "alpha", "R0", 2021-07-14T04:40:28,849 | ^~~ 2021-07-14T04:40:28,850 Interface/PotentialInterface.cpp:502:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,850 502 | "D", "alpha", "R0", 2021-07-14T04:40:28,850 | ^~~~~~~ 2021-07-14T04:40:28,850 Interface/PotentialInterface.cpp:502:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,850 502 | "D", "alpha", "R0", 2021-07-14T04:40:28,850 | ^~~~ 2021-07-14T04:40:28,851 Interface/PotentialInterface.cpp:503:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,851 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T04:40:28,851 | ^~~ 2021-07-14T04:40:28,852 Interface/PotentialInterface.cpp:503:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,853 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T04:40:28,853 | ^~~ 2021-07-14T04:40:28,853 Interface/PotentialInterface.cpp:503:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,853 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T04:40:28,853 | ^~~~ 2021-07-14T04:40:28,853 Interface/PotentialInterface.cpp:503:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,854 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T04:40:28,854 | ^~~~~~~~~~~ 2021-07-14T04:40:28,854 Interface/PotentialInterface.cpp:504:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,854 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T04:40:28,854 | ^~~~~~ 2021-07-14T04:40:28,854 Interface/PotentialInterface.cpp:504:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,854 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T04:40:28,854 | ^~~~~~~ 2021-07-14T04:40:28,855 Interface/PotentialInterface.cpp:504:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,855 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T04:40:28,855 | ^~~~~~~~~~~~~~~ 2021-07-14T04:40:28,855 Interface/PotentialInterface.cpp:504:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,855 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T04:40:28,855 | ^~~~~~~~~ 2021-07-14T04:40:28,855 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterface2Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,855 Interface/PotentialInterface.cpp:565:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,856 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,856 | ^~~ 2021-07-14T04:40:28,856 Interface/PotentialInterface.cpp:565:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,856 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,856 | ^~~ 2021-07-14T04:40:28,856 Interface/PotentialInterface.cpp:565:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,856 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,856 | ^~~ 2021-07-14T04:40:28,857 Interface/PotentialInterface.cpp:565:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,857 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,857 | ^~~~ 2021-07-14T04:40:28,857 Interface/PotentialInterface.cpp:565:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,857 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,857 | ^~~~ 2021-07-14T04:40:28,857 Interface/PotentialInterface.cpp:565:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,857 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T04:40:28,857 | ^~~~~~~~~ 2021-07-14T04:40:28,858 Interface/PotentialInterface.cpp:566:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,858 566 | "q", "kappa", 2021-07-14T04:40:28,858 | ^~~ 2021-07-14T04:40:28,858 Interface/PotentialInterface.cpp:566:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,858 566 | "q", "kappa", 2021-07-14T04:40:28,858 | ^~~~~~~ 2021-07-14T04:40:28,858 Interface/PotentialInterface.cpp:567:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,858 567 | "D", "alpha", "R0", 2021-07-14T04:40:28,859 | ^~~ 2021-07-14T04:40:28,859 Interface/PotentialInterface.cpp:567:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,859 567 | "D", "alpha", "R0", 2021-07-14T04:40:28,859 | ^~~~~~~ 2021-07-14T04:40:28,859 Interface/PotentialInterface.cpp:567:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,859 567 | "D", "alpha", "R0", 2021-07-14T04:40:28,859 | ^~~~ 2021-07-14T04:40:28,859 Interface/PotentialInterface.cpp:568:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,859 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T04:40:28,860 | ^~~ 2021-07-14T04:40:28,860 Interface/PotentialInterface.cpp:568:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,860 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T04:40:28,860 | ^~~ 2021-07-14T04:40:28,860 Interface/PotentialInterface.cpp:568:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,860 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T04:40:28,860 | ^~~~ 2021-07-14T04:40:28,860 Interface/PotentialInterface.cpp:568:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,861 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T04:40:28,861 | ^~~~~~~~~~~ 2021-07-14T04:40:28,861 Interface/PotentialInterface.cpp:569:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,861 569 | "E", "rho0", "l0", 2021-07-14T04:40:28,861 | ^~~ 2021-07-14T04:40:28,861 Interface/PotentialInterface.cpp:569:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,861 569 | "E", "rho0", "l0", 2021-07-14T04:40:28,861 | ^~~~~~ 2021-07-14T04:40:28,862 Interface/PotentialInterface.cpp:569:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,862 569 | "E", "rho0", "l0", 2021-07-14T04:40:28,862 | ^~~~ 2021-07-14T04:40:28,862 Interface/PotentialInterface.cpp:570:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,862 570 | "B", "C", 2021-07-14T04:40:28,862 | ^~~ 2021-07-14T04:40:28,862 Interface/PotentialInterface.cpp:570:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,863 570 | "B", "C", 2021-07-14T04:40:28,863 | ^~~ 2021-07-14T04:40:28,863 Interface/PotentialInterface.cpp:571:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,863 571 | "interface_cut", "verbose", NULL}; 2021-07-14T04:40:28,863 | ^~~~~~~~~~~~~~~ 2021-07-14T04:40:28,863 Interface/PotentialInterface.cpp:571:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,863 571 | "interface_cut", "verbose", NULL}; 2021-07-14T04:40:28,863 | ^~~~~~~~~ 2021-07-14T04:40:28,864 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MorseInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,864 Interface/PotentialInterface.cpp:647:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,864 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T04:40:28,864 | ^~~~~~~~~~ 2021-07-14T04:40:28,864 Interface/PotentialInterface.cpp:647:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,864 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T04:40:28,864 | ^~~~~~~~~ 2021-07-14T04:40:28,865 Interface/PotentialInterface.cpp:647:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,865 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T04:40:28,865 | ^~~~~~~ 2021-07-14T04:40:28,865 Interface/PotentialInterface.cpp:647:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,865 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T04:40:28,865 | ^~~~~~ 2021-07-14T04:40:28,865 Interface/PotentialInterface.cpp:648:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,865 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T04:40:28,866 | ^~~~~~ 2021-07-14T04:40:28,866 Interface/PotentialInterface.cpp:648:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,866 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T04:40:28,866 | ^~~~~~~~~~ 2021-07-14T04:40:28,866 Interface/PotentialInterface.cpp:648:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,866 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T04:40:28,866 | ^~~~~~~~~ 2021-07-14T04:40:28,867 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetPotentialEnergy(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:28,867 Interface/PotentialInterface.cpp:711:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,867 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T04:40:28,867 | ^~~~~~~ 2021-07-14T04:40:28,867 Interface/PotentialInterface.cpp:711:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:28,867 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T04:40:28,867 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T04:40:28,877 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetExtra(AsapNS::PyAsap_PotentialObject*, PyObject*)’: 2021-07-14T04:40:28,877 Interface/PotentialInterface.cpp:863:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:40:28,878 863 | for (int i = 0; i < s1.size(); i++) 2021-07-14T04:40:28,878 | ~~^~~~~~~~~~~ 2021-07-14T04:40:31,535 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PythonConversions.cpp -o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o 2021-07-14T04:40:33,000 In file included from Basics/AsapPython.h:44, 2021-07-14T04:40:33,000 from Interface/PythonConversions.h:30, 2021-07-14T04:40:33,000 from Interface/PythonConversions.cpp:24: 2021-07-14T04:40:33,000 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T04:40:33,000 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:33,001 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T04:40:33,001 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:33,001 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:33,001 | ^~ 2021-07-14T04:40:33,010 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T04:40:33,010 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:33,011 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T04:40:33,011 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:33,011 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:33,011 | ^~ 2021-07-14T04:40:33,019 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T04:40:33,019 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:33,019 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T04:40:33,020 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:33,020 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:33,020 | ^~ 2021-07-14T04:40:33,030 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T04:40:33,030 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:33,030 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T04:40:33,030 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:33,031 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:33,031 | ^~ 2021-07-14T04:40:33,040 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T04:40:33,041 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:33,041 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T04:40:33,041 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:33,041 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:33,041 | ^~ 2021-07-14T04:40:33,910 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/RDFInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o 2021-07-14T04:40:35,456 In file included from Basics/AsapPython.h:44, 2021-07-14T04:40:35,456 from Interface/RDFInterface.h:30, 2021-07-14T04:40:35,457 from Interface/RDFInterface.cpp:27: 2021-07-14T04:40:35,457 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T04:40:35,457 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:35,457 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T04:40:35,457 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:35,457 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:35,457 | ^~ 2021-07-14T04:40:35,467 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T04:40:35,467 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:35,467 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T04:40:35,467 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:35,467 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:35,467 | ^~ 2021-07-14T04:40:35,475 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T04:40:35,475 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:35,475 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T04:40:35,475 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:35,475 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:35,476 | ^~ 2021-07-14T04:40:35,486 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T04:40:35,486 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:35,486 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T04:40:35,486 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:35,486 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:35,487 | ^~ 2021-07-14T04:40:35,496 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T04:40:35,496 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:35,497 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T04:40:35,497 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:35,497 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:35,497 | ^~ 2021-07-14T04:40:37,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ToolsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o 2021-07-14T04:40:38,898 In file included from Basics/AsapPython.h:44, 2021-07-14T04:40:38,899 from Interface/ToolsInterface.cpp:27: 2021-07-14T04:40:38,899 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T04:40:38,899 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:38,899 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T04:40:38,899 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:38,899 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:38,899 | ^~ 2021-07-14T04:40:38,910 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T04:40:38,910 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:38,910 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T04:40:38,910 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:38,911 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:38,911 | ^~ 2021-07-14T04:40:38,920 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T04:40:38,920 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:38,920 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T04:40:38,920 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:38,920 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:38,921 | ^~ 2021-07-14T04:40:38,931 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T04:40:38,932 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:38,932 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T04:40:38,932 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:38,932 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:38,932 | ^~ 2021-07-14T04:40:38,943 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T04:40:38,943 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:40:38,943 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T04:40:38,943 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:40:38,944 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:40:38,944 | ^~ 2021-07-14T04:40:39,146 Interface/ToolsInterface.cpp: In function ‘int AsapNS::PyAsap_FullCNAInit(AsapNS::PyAsap_FullCNAObject*, PyObject*, PyObject*)’: 2021-07-14T04:40:39,146 Interface/ToolsInterface.cpp:92:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:39,146 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T04:40:39,146 | ^~~~~~~ 2021-07-14T04:40:39,147 Interface/ToolsInterface.cpp:92:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:40:39,147 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T04:40:39,147 | ^~~~~~~~ 2021-07-14T04:40:39,873 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/alloy_types.cpp -o build/temp.linux-armv7l-3.9/PTM/alloy_types.o 2021-07-14T04:40:41,550 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/canonical.cpp -o build/temp.linux-armv7l-3.9/PTM/canonical.o 2021-07-14T04:40:43,440 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/convex_hull_incremental.cpp -o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o 2021-07-14T04:40:45,457 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/deformation_gradient.cpp -o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o 2021-07-14T04:40:47,017 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/graph_data.cpp -o build/temp.linux-armv7l-3.9/PTM/graph_data.o 2021-07-14T04:40:48,690 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/index_ptm.cpp -o build/temp.linux-armv7l-3.9/PTM/index_ptm.o 2021-07-14T04:40:50,762 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/initialize_data.cpp -o build/temp.linux-armv7l-3.9/PTM/initialize_data.o 2021-07-14T04:40:52,509 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/neighbour_ordering.cpp -o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o 2021-07-14T04:40:53,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/normalize_vertices.cpp -o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o 2021-07-14T04:40:54,252 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/polar.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o 2021-07-14T04:40:55,139 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/quat.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o 2021-07-14T04:40:55,686 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/voronoi/cell.cpp -o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o 2021-07-14T04:40:59,119 In file included from /usr/include/c++/10/vector:72, 2021-07-14T04:40:59,119 from PTM/voronoi/cell.hpp:15, 2021-07-14T04:40:59,120 from PTM/voronoi/cell.cpp:16: 2021-07-14T04:40:59,120 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T04:40:59,120 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T04:40:59,120 426 | vector<_Tp, _Alloc>:: 2021-07-14T04:40:59,120 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:40:59,181 /usr/include/c++/10/bits/vector.tcc: In member function ‘void voro::voronoicell_base::face_areas(std::vector&)’: 2021-07-14T04:40:59,181 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:40:59,181 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T04:40:59,182 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:40:59,443 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT.o 2021-07-14T04:41:01,345 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::SetAtoms(PyObject*, AsapNS::Atoms*)’: 2021-07-14T04:41:01,346 Potentials/EMT.cpp:193:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:01,346 193 | for (int i = 0; i < parameters.size(); i++) 2021-07-14T04:41:01,346 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:01,363 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::Allocate()’: 2021-07-14T04:41:01,363 Potentials/EMT.cpp:242:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:01,363 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T04:41:01,363 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-14T04:41:01,364 Potentials/EMT.cpp:242:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:01,364 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T04:41:01,364 | ~~~~~~~^~~~~~~~~~~~~ 2021-07-14T04:41:01,364 Potentials/EMT.cpp:251:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:01,364 251 | if (force.capacity() < nSize) 2021-07-14T04:41:01,364 | ~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T04:41:01,365 Potentials/EMT.cpp:262:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:01,365 262 | if (Eas.capacity() < nAtoms) 2021-07-14T04:41:01,365 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:41:01,368 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::AllocateStress()’: 2021-07-14T04:41:01,369 Potentials/EMT.cpp:302:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:01,369 302 | if (ghostatoms && (virials.capacity() < nSize)) 2021-07-14T04:41:01,369 | ~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T04:41:01,370 In file included from Basics/AsapPython.h:44, 2021-07-14T04:41:01,370 from Potentials/EMT.h:34, 2021-07-14T04:41:01,370 from Potentials/EMT.cpp:34: 2021-07-14T04:41:01,370 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::InitParameters()’: 2021-07-14T04:41:01,370 Potentials/EMT.cpp:324:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:01,370 324 | ASSERT(nelements == elements_set.size()); 2021-07-14T04:41:01,371 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:01,371 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:01,371 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:01,371 | ^~ 2021-07-14T04:41:01,390 Potentials/EMT.cpp: In member function ‘virtual const std::vector& AsapNS::EMT::GetPotentialEnergies(PyObject*)’: 2021-07-14T04:41:01,391 Potentials/EMT.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:01,391 538 | ASSERT(Epot.size() == nAtoms); 2021-07-14T04:41:01,391 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T04:41:01,391 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:01,391 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:01,391 | ^~ 2021-07-14T04:41:01,433 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T04:41:01,433 Potentials/EMT.cpp:1259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:01,433 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T04:41:01,434 | ~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T04:41:01,434 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:01,434 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:01,434 | ^~ 2021-07-14T04:41:01,434 Potentials/EMT.cpp:1259:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:01,434 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T04:41:01,434 | ~~~~~~~^~~~~~~~~~~~ 2021-07-14T04:41:01,435 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:01,435 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:01,435 | ^~ 2021-07-14T04:41:01,435 Potentials/EMT.cpp:1260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:01,435 1260 | nSize == dEds.size()); 2021-07-14T04:41:01,435 | ~~~~~~^~~~~~~~~~~~~~ 2021-07-14T04:41:01,435 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:01,435 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:01,436 | ^~ 2021-07-14T04:41:01,447 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergies()’: 2021-07-14T04:41:01,448 Potentials/EMT.cpp:1425:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:01,448 1425 | ASSERT(virials.size() == nSize); 2021-07-14T04:41:01,448 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:41:01,448 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:01,448 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:01,448 | ^~ 2021-07-14T04:41:01,458 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergiesSingle()’: 2021-07-14T04:41:01,458 Potentials/EMT.cpp:1544:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:01,459 1544 | ASSERT(this->force.size() >= nSize); 2021-07-14T04:41:01,459 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:41:01,459 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:01,459 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:01,459 | ^~ 2021-07-14T04:41:01,459 Potentials/EMT.cpp:1547:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:01,459 1547 | ASSERT(virials.size() == nSize); 2021-07-14T04:41:01,460 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:41:01,460 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:01,460 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:01,460 | ^~ 2021-07-14T04:41:08,182 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT2013.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o 2021-07-14T04:41:10,072 In file included from Basics/AsapPython.h:44, 2021-07-14T04:41:10,072 from Potentials/EMT.h:34, 2021-07-14T04:41:10,073 from Potentials/EMT2013.h:13, 2021-07-14T04:41:10,073 from Potentials/EMT2013.cpp:8: 2021-07-14T04:41:10,073 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::InitParameters()’: 2021-07-14T04:41:10,073 Potentials/EMT2013.cpp:105:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:10,073 105 | ASSERT(nelements == elements_set.size()); 2021-07-14T04:41:10,073 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:10,073 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:10,073 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:10,074 | ^~ 2021-07-14T04:41:10,110 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T04:41:10,110 Potentials/EMT2013.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:10,110 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T04:41:10,110 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:10,110 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:10,111 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:10,111 | ^~ 2021-07-14T04:41:10,111 Potentials/EMT2013.cpp:568:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:10,111 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T04:41:10,111 | ~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:10,111 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:10,111 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:10,112 | ^~ 2021-07-14T04:41:10,112 Potentials/EMT2013.cpp:569:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:10,112 569 | nSize == this->dEds.size()); 2021-07-14T04:41:10,112 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:10,112 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:10,112 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:10,112 | ^~ 2021-07-14T04:41:12,842 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o 2021-07-14T04:41:15,271 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o 2021-07-14T04:41:17,523 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o 2021-07-14T04:41:19,500 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/LennardJones.cpp -o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o 2021-07-14T04:41:21,322 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetVirials(PyObject*)’: 2021-07-14T04:41:21,322 Potentials/LennardJones.cpp:374:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:21,323 374 | if (nAtoms != virials.size()) 2021-07-14T04:41:21,323 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T04:41:21,328 In file included from Basics/AsapPython.h:44, 2021-07-14T04:41:21,329 from Potentials/LennardJones.cpp:43: 2021-07-14T04:41:21,329 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetForces(PyObject*)’: 2021-07-14T04:41:21,329 Potentials/LennardJones.cpp:484:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:21,329 484 | ASSERT(forces.size() == nSize); 2021-07-14T04:41:21,329 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:41:21,330 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:21,330 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:21,330 | ^~ 2021-07-14T04:41:21,333 Potentials/LennardJones.cpp: In member function ‘double AsapNS::LennardJones::CalculateEnergyAndEnergies()’: 2021-07-14T04:41:21,333 Potentials/LennardJones.cpp:580:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:21,333 580 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T04:41:21,334 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T04:41:21,334 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:21,334 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:21,334 | ^~ 2021-07-14T04:41:24,061 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o 2021-07-14T04:41:25,887 In file included from Basics/AsapPython.h:44, 2021-07-14T04:41:25,888 from Potentials/MetalOxideInterface.cpp:29: 2021-07-14T04:41:25,888 Potentials/MetalOxideInterface.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface::GetForces(PyObject*)’: 2021-07-14T04:41:25,888 Potentials/MetalOxideInterface.cpp:316:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:25,888 316 | ASSERT(forces.size() == nSize); 2021-07-14T04:41:25,888 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:41:25,888 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:25,889 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:25,889 | ^~ 2021-07-14T04:41:25,905 Potentials/MetalOxideInterface.cpp: In member function ‘double AsapNS::MetalOxideInterface::CalculateEnergyAndEnergies()’: 2021-07-14T04:41:25,905 Potentials/MetalOxideInterface.cpp:571:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:25,905 571 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T04:41:25,905 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T04:41:25,905 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:25,905 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:25,906 | ^~ 2021-07-14T04:41:29,473 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface2.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o 2021-07-14T04:41:31,333 In file included from Basics/AsapPython.h:44, 2021-07-14T04:41:31,333 from Potentials/MetalOxideInterface2.cpp:43: 2021-07-14T04:41:31,333 Potentials/MetalOxideInterface2.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface2::GetForces(PyObject*)’: 2021-07-14T04:41:31,334 Potentials/MetalOxideInterface2.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:31,334 330 | ASSERT(forces.size() == nSize); 2021-07-14T04:41:31,334 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:41:31,334 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:31,334 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:31,334 | ^~ 2021-07-14T04:41:31,349 Potentials/MetalOxideInterface2.cpp: In member function ‘double AsapNS::MetalOxideInterface2::CalculateEnergyAndEnergies()’: 2021-07-14T04:41:31,349 Potentials/MetalOxideInterface2.cpp:552:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:31,349 552 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T04:41:31,349 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T04:41:31,349 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:31,349 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:31,350 | ^~ 2021-07-14T04:41:35,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MonteCarloEMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o 2021-07-14T04:41:39,030 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Morse.cpp -o build/temp.linux-armv7l-3.9/Potentials/Morse.o 2021-07-14T04:41:40,890 In file included from Basics/AsapPython.h:44, 2021-07-14T04:41:40,890 from Potentials/Morse.cpp:43: 2021-07-14T04:41:40,891 Potentials/Morse.cpp: In member function ‘double AsapNS::Morse::CalculateEnergyAndEnergies()’: 2021-07-14T04:41:40,891 Potentials/Morse.cpp:472:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:40,891 472 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T04:41:40,891 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T04:41:40,891 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:40,891 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:40,891 | ^~ 2021-07-14T04:41:42,930 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T04:41:42,930 from Potentials/Morse.cpp:54: 2021-07-14T04:41:42,930 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T04:41:42,931 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:42,931 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-14T04:41:42,931 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:42,931 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:42,931 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:42,931 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:42,952 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-14T04:41:42,953 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:42,953 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-14T04:41:42,953 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:42,969 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T04:41:42,969 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:42,969 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-14T04:41:42,969 | ^~~~~~~~~~~~~~~~ 2021-07-14T04:41:42,969 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:42,998 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-14T04:41:42,998 from /usr/include/c++/10/algorithm:62, 2021-07-14T04:41:42,999 from Potentials/Morse.cpp:54: 2021-07-14T04:41:42,999 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T04:41:42,999 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:42,999 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-14T04:41:42,999 | ^~~~~~~~~~~~~ 2021-07-14T04:41:43,039 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T04:41:43,039 from Potentials/Morse.cpp:54: 2021-07-14T04:41:43,040 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T04:41:43,040 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,040 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-14T04:41:43,040 | ^~~~~~~~~~~~~ 2021-07-14T04:41:43,040 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,040 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,040 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,074 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T04:41:43,074 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,074 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-14T04:41:43,074 | ^~~~~~~~~~~~~~~~ 2021-07-14T04:41:43,074 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,074 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,075 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,075 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-14T04:41:43,075 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:43,075 1925 | __comp); 2021-07-14T04:41:43,075 | ~~~~~~~ 2021-07-14T04:41:43,075 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,075 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,076 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-14T04:41:43,076 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:43,076 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,076 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-14T04:41:43,076 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:43,114 /usr/include/c++/10/bits/stl_algo.h: In member function ‘double AsapNS::Morse::Add(std::vector&)’: 2021-07-14T04:41:43,115 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,115 1974 | std::__introsort_loop(__first, __last, 2021-07-14T04:41:43,115 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T04:41:43,115 1975 | std::__lg(__last - __first) * 2, 2021-07-14T04:41:43,115 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:43,115 1976 | __comp); 2021-07-14T04:41:43,115 | ~~~~~~~ 2021-07-14T04:41:43,116 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,116 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-14T04:41:43,116 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:43,116 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T04:41:43,116 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-14T04:41:43,116 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:41:43,512 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Potential.cpp -o build/temp.linux-armv7l-3.9/Potentials/Potential.o 2021-07-14T04:41:45,019 Potentials/Potential.cpp: In member function ‘virtual AsapNS::SymTensor AsapNS::Potential::GetVirial(PyObject*)’: 2021-07-14T04:41:45,019 Potentials/Potential.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:45,020 52 | for (int i = 0; i < virials.size(); i++) 2021-07-14T04:41:45,020 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T04:41:45,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RGL.cpp -o build/temp.linux-armv7l-3.9/Potentials/RGL.o 2021-07-14T04:41:47,253 Potentials/RGL.cpp: In member function ‘void AsapNS::RGL::Allocate()’: 2021-07-14T04:41:47,254 Potentials/RGL.cpp:127:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:47,254 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T04:41:47,254 | ~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T04:41:47,254 Potentials/RGL.cpp:127:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:41:47,254 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T04:41:47,254 | ~~~~~~~^~~~~~~~~~~~~~ 2021-07-14T04:41:50,031 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o 2021-07-14T04:41:51,861 In file included from Basics/AsapPython.h:44, 2021-07-14T04:41:51,861 from Potentials/RahmanStillingerLemberg.cpp:43: 2021-07-14T04:41:51,861 Potentials/RahmanStillingerLemberg.cpp: In member function ‘virtual const std::vector& AsapNS::RahmanStillingerLemberg::GetForces(PyObject*)’: 2021-07-14T04:41:51,862 Potentials/RahmanStillingerLemberg.cpp:355:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:51,862 355 | ASSERT(forces.size() == nSize); 2021-07-14T04:41:51,862 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T04:41:51,862 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:51,862 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:51,862 | ^~ 2021-07-14T04:41:51,870 Potentials/RahmanStillingerLemberg.cpp: In member function ‘double AsapNS::RahmanStillingerLemberg::CalculateEnergyAndEnergies()’: 2021-07-14T04:41:51,870 Potentials/RahmanStillingerLemberg.cpp:452:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:41:51,870 452 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T04:41:51,870 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T04:41:51,871 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:41:51,871 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:41:51,871 | ^~ 2021-07-14T04:41:54,781 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CNA.cpp -o build/temp.linux-armv7l-3.9/Tools/CNA.o 2021-07-14T04:41:56,426 Tools/CNA.cpp: In function ‘void AsapNS::CNA(PyObject*, double, std::vector&)’: 2021-07-14T04:41:56,427 Tools/CNA.cpp:54:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T04:41:56,427 54 | for (unsigned int a2 = 0; a2 < nTotal; a2++) 2021-07-14T04:41:56,427 | ~~~^~~~~~~~ 2021-07-14T04:41:56,433 Tools/CNA.cpp:62:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:41:56,433 62 | if (a1 < a2) 2021-07-14T04:41:56,433 | ~~~^~~~ 2021-07-14T04:41:56,434 Tools/CNA.cpp:82:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T04:41:56,434 82 | for (unsigned int j1 = 0; j1 < j2; j1++) 2021-07-14T04:41:56,434 | ~~~^~~~ 2021-07-14T04:41:57,490 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CoordinationNumbers.cpp -o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o 2021-07-14T04:41:59,738 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/FullCNA.cpp -o build/temp.linux-armv7l-3.9/Tools/FullCNA.o 2021-07-14T04:42:04,313 In file included from /usr/include/c++/10/map:60, 2021-07-14T04:42:04,313 from Tools/FullCNA.h:35, 2021-07-14T04:42:04,314 from Tools/FullCNA.cpp:24: 2021-07-14T04:42:04,314 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T04:42:04,314 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T04:42:04,314 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T04:42:04,314 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:04,701 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T04:42:04,702 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T04:42:04,702 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T04:42:04,702 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:04,747 In file included from /usr/include/c++/10/map:61, 2021-07-14T04:42:04,747 from Tools/FullCNA.h:35, 2021-07-14T04:42:04,748 from Tools/FullCNA.cpp:24: 2021-07-14T04:42:04,748 /usr/include/c++/10/bits/stl_map.h: In member function ‘void AsapNS::FullCNA::SetMultipleCutoffs(std::map, double>&)’: 2021-07-14T04:42:04,748 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T04:42:04,748 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T04:42:04,748 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:04,748 502 | std::tuple(__k), 2021-07-14T04:42:04,748 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:04,748 503 | std::tuple<>()); 2021-07-14T04:42:04,749 | ~~~~~~~~~~~~~~~ 2021-07-14T04:42:04,749 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T04:42:04,749 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T04:42:04,749 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:04,749 502 | std::tuple(__k), 2021-07-14T04:42:04,749 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:04,749 503 | std::tuple<>()); 2021-07-14T04:42:04,749 | ~~~~~~~~~~~~~~~ 2021-07-14T04:42:05,672 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/GetNeighborList.cpp -o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o 2021-07-14T04:42:07,938 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/RawRadialDistribution.cpp -o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o 2021-07-14T04:42:09,606 In file included from Basics/AsapPython.h:44, 2021-07-14T04:42:09,606 from Tools/RawRadialDistribution.cpp:29: 2021-07-14T04:42:09,606 Tools/RawRadialDistribution.cpp: In function ‘void AsapNS::RawRadialDistribution(PyObject*, int, const int*, double, int, AsapNS::RDFtype&, AsapNS::RDFcountType&, long int*)’: 2021-07-14T04:42:09,607 Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integer expressions of different signedness: ‘std::vector, long int*> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:09,607 55 | ASSERT(result.size() == nGroups); 2021-07-14T04:42:09,607 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T04:42:09,607 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:09,607 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:09,607 | ^~ 2021-07-14T04:42:09,615 Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:09,616 56 | ASSERT(counts.size() == nGroups); 2021-07-14T04:42:09,616 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T04:42:09,616 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:09,616 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:09,616 | ^~ 2021-07-14T04:42:11,236 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o 2021-07-14T04:42:13,780 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c VersionInfo_autogen/version_piwheels31_s.cpp -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels31_s.o 2021-07-14T04:42:13,993 VersionInfo_autogen/version_piwheels31_s.cpp:15:61: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2021-07-14T04:42:13,993 15 | return ("ASAP version 3.11.3 serial, compiled " __DATE__ " " __TIME__ " on piwheels31 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T04:42:13,993 | ^~~~~~~~ 2021-07-14T04:42:13,994 VersionInfo_autogen/version_piwheels31_s.cpp:15:74: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2021-07-14T04:42:13,994 15 | return ("ASAP version 3.11.3 serial, compiled " __DATE__ " " __TIME__ " on piwheels31 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T04:42:13,994 | ^~~~~~~~ 2021-07-14T04:42:14,609 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels31_s.o -lm -o build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so 2021-07-14T04:42:16,052 *** Building the asap-python executable *** 2021-07-14T04:42:16,055 *** COMPILING: ['ParallelInterface/mpi.c'] 2021-07-14T04:42:16,055 mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o -c ParallelInterface/mpi.c 2021-07-14T04:42:17,642 *** COMPILING: ['Parallel/ParallelAtoms.cpp', 'Parallel/ParallelPotential.cpp', 'Parallel/RegularGridDecomposition.cpp', 'ParallelInterface/AsapParallel.cpp', 'ParallelInterface/ParallelAtomsInterface.cpp', 'ParallelInterface/ParallelNeighborListInterface.cpp', 'ParallelInterface/ParallelPotentialInterface.cpp', 'VersionInfo_autogen/version_piwheels31_p.cpp'] 2021-07-14T04:42:17,643 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o -c Parallel/ParallelAtoms.cpp 2021-07-14T04:42:19,591 In file included from Basics/AsapPython.h:44, 2021-07-14T04:42:19,591 from Parallel/ParallelAtoms.h:28, 2021-07-14T04:42:19,591 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T04:42:19,591 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T04:42:19,591 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:19,592 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T04:42:19,592 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,592 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:19,592 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:19,592 | ^~ 2021-07-14T04:42:19,592 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T04:42:19,593 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:19,593 301 | ASSERT(sendbuf.size() == size); 2021-07-14T04:42:19,593 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T04:42:19,593 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:19,593 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:19,593 | ^~ 2021-07-14T04:42:19,628 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::Migrate(bool)’: 2021-07-14T04:42:19,628 Parallel/ParallelAtoms.cpp:241:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:19,628 241 | (sendlist->size() < nProcessors)); 2021-07-14T04:42:19,628 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2021-07-14T04:42:19,628 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:19,628 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:19,629 | ^~ 2021-07-14T04:42:19,663 Parallel/ParallelAtoms.cpp:318:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,664 318 | for (int j = 0; j < arrays.size(); j++) 2021-07-14T04:42:19,664 | ~~^~~~~~~~~~~~~~~ 2021-07-14T04:42:19,665 Parallel/ParallelAtoms.cpp:338:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,665 338 | for (int j = 0; j < new_arrays.size(); j++) 2021-07-14T04:42:19,665 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,665 In file included from Basics/AsapPython.h:44, 2021-07-14T04:42:19,665 from Parallel/ParallelAtoms.h:28, 2021-07-14T04:42:19,665 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T04:42:19,666 Parallel/ParallelAtoms.cpp:345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,666 345 | ASSERT(b - b0 == receiveBuffer.size()); 2021-07-14T04:42:19,666 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,666 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:19,666 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:19,666 | ^~ 2021-07-14T04:42:19,712 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::UpdateGhostData()’: 2021-07-14T04:42:19,713 Parallel/ParallelAtoms.cpp:609:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,713 609 | for (int i = 0; i < array_names.size(); i++) 2021-07-14T04:42:19,713 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,715 Parallel/ParallelAtoms.cpp:630:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,715 630 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T04:42:19,715 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,715 Parallel/ParallelAtoms.cpp:637:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,715 637 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T04:42:19,716 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,723 In file included from Basics/AsapPython.h:44, 2021-07-14T04:42:19,723 from Parallel/ParallelAtoms.h:28, 2021-07-14T04:42:19,723 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T04:42:19,723 Parallel/ParallelAtoms.cpp:649:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,723 649 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); 2021-07-14T04:42:19,723 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,724 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:19,724 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:19,724 | ^~ 2021-07-14T04:42:19,724 Parallel/ParallelAtoms.cpp:659:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,724 659 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T04:42:19,724 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,730 Parallel/ParallelAtoms.cpp: In member function ‘virtual void AsapNS::ParallelAtoms::CommunicateData(double*, int)’: 2021-07-14T04:42:19,730 Parallel/ParallelAtoms.cpp:717:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,730 717 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T04:42:19,730 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,763 In file included from Basics/AsapPython.h:44, 2021-07-14T04:42:19,763 from Parallel/ParallelAtoms.h:28, 2021-07-14T04:42:19,763 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T04:42:19,764 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T04:42:19,764 Parallel/ParallelAtoms.cpp:1105:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:19,764 1105 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T04:42:19,764 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,764 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:19,764 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:19,764 | ^~ 2021-07-14T04:42:19,765 Parallel/ParallelAtoms.cpp:1111:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,765 1111 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T04:42:19,765 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,776 In file included from Basics/AsapPython.h:44, 2021-07-14T04:42:19,776 from Parallel/ParallelAtoms.h:28, 2021-07-14T04:42:19,776 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T04:42:19,777 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T04:42:19,777 Parallel/ParallelAtoms.cpp:1138:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:19,777 1138 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T04:42:19,777 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:19,777 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:19,777 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:19,777 | ^~ 2021-07-14T04:42:19,778 Parallel/ParallelAtoms.cpp:1144:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T04:42:19,778 1144 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T04:42:19,778 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:25,025 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o -c Parallel/ParallelPotential.cpp 2021-07-14T04:42:26,883 In file included from Basics/AsapPython.h:44, 2021-07-14T04:42:26,883 from Parallel/ParallelPotential.h:28, 2021-07-14T04:42:26,883 from Parallel/ParallelPotential.cpp:24: 2021-07-14T04:42:26,883 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T04:42:26,883 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:26,883 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T04:42:26,884 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:26,884 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:26,884 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:26,884 | ^~ 2021-07-14T04:42:26,884 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T04:42:26,884 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:26,884 301 | ASSERT(sendbuf.size() == size); 2021-07-14T04:42:26,885 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T04:42:26,885 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:26,885 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:26,885 | ^~ 2021-07-14T04:42:28,671 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o -c Parallel/RegularGridDecomposition.cpp 2021-07-14T04:42:30,515 In file included from Basics/AsapPython.h:44, 2021-07-14T04:42:30,515 from Parallel/RegularGridDecomposition.cpp:24: 2021-07-14T04:42:30,515 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T04:42:30,515 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:30,515 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T04:42:30,515 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T04:42:30,516 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:30,516 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:30,516 | ^~ 2021-07-14T04:42:30,516 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T04:42:30,516 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T04:42:30,516 301 | ASSERT(sendbuf.size() == size); 2021-07-14T04:42:30,516 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T04:42:30,517 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:30,517 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:30,517 | ^~ 2021-07-14T04:42:33,199 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o -c ParallelInterface/AsapParallel.cpp 2021-07-14T04:42:35,354 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o -c ParallelInterface/ParallelAtomsInterface.cpp 2021-07-14T04:42:37,194 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o -c ParallelInterface/ParallelNeighborListInterface.cpp 2021-07-14T04:42:38,666 In file included from Basics/AsapPython.h:44, 2021-07-14T04:42:38,666 from ParallelInterface/ParallelNeighborListInterface.cpp:2: 2021-07-14T04:42:38,667 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T04:42:38,667 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:42:38,667 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T04:42:38,667 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:38,667 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:38,667 | ^~ 2021-07-14T04:42:38,679 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T04:42:38,679 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:42:38,679 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T04:42:38,680 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:38,680 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:38,680 | ^~ 2021-07-14T04:42:38,689 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T04:42:38,689 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:42:38,689 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T04:42:38,689 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:38,689 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:38,689 | ^~ 2021-07-14T04:42:38,701 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T04:42:38,701 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:42:38,702 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T04:42:38,702 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:38,702 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:38,702 | ^~ 2021-07-14T04:42:38,713 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T04:42:38,713 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T04:42:38,713 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T04:42:38,713 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T04:42:38,713 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T04:42:38,713 | ^~ 2021-07-14T04:42:38,906 ParallelInterface/ParallelNeighborListInterface.cpp: In function ‘PyObject* PyAsap_NewNeighborCellLocator_Parallel(PyObject*, PyObject*, PyObject*)’: 2021-07-14T04:42:38,906 ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:42:38,907 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T04:42:38,907 | ^~~~~~ 2021-07-14T04:42:38,907 ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:42:38,907 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T04:42:38,907 | ^~~~~~~ 2021-07-14T04:42:38,907 ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:42:38,908 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T04:42:38,908 | ^~~~~~~~~~~~~ 2021-07-14T04:42:39,382 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o -c ParallelInterface/ParallelPotentialInterface.cpp 2021-07-14T04:42:40,754 ParallelInterface/ParallelPotentialInterface.cpp: In function ‘int PyAsap_ParPotInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T04:42:40,754 ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T04:42:40,754 48 | static char *kwlist[] = {"potential", NULL}; 2021-07-14T04:42:40,754 | ^~~~~~~~~~~ 2021-07-14T04:42:41,148 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels31_p.o -c VersionInfo_autogen/version_piwheels31_p.cpp 2021-07-14T04:42:41,962 mpicxx -o build/bin.linux-armv7l-3.9/asap-python build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels31_p.o -L/usr/lib/python3.9/config-3.9-arm-linux-gnueabihf -lm -lpython3.9 -lm -lpython3.9 -lcrypt -lpthread -ldl -lutil -lm -lm -Wl,-z,relro -g -fwrapv -O2 -lexpat -L/usr/lib -lz -lexpat -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-14T04:42:44,097 running build_scripts 2021-07-14T04:42:44,098 Protecting build/bin.linux-armv7l-3.9/asap-python from ajustment 2021-07-14T04:42:44,098 creating build/scripts-3.9 2021-07-14T04:42:44,099 copying and adjusting scripts/asap-qsub -> build/scripts-3.9 2021-07-14T04:42:44,102 copying and adjusting scripts/asap-sbatch -> build/scripts-3.9 2021-07-14T04:42:44,103 changing mode of build/scripts-3.9/asap-qsub from 644 to 755 2021-07-14T04:42:44,104 changing mode of build/scripts-3.9/asap-sbatch from 644 to 755 2021-07-14T04:42:44,105 copying build/bin.linux-armv7l-3.9/asap-python -> build/scripts-3.9 2021-07-14T04:42:44,344 installing to build/bdist.linux-armv7l/wheel 2021-07-14T04:42:44,344 running install 2021-07-14T04:42:44,346 running install_lib 2021-07-14T04:42:44,350 creating build/bdist.linux-armv7l 2021-07-14T04:42:44,350 creating build/bdist.linux-armv7l/wheel 2021-07-14T04:42:44,353 creating build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,354 creating build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,356 copying build/lib.linux-armv7l-3.9/asap3/Tools/EMT_two_atom_test.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,359 creating build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,360 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Search.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,363 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/EMT.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,365 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,367 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Optimization.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,370 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,373 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Performance.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,376 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Quantities.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,379 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,385 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/RGL.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,388 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Sampling.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,390 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/GetParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T04:42:44,392 copying build/lib.linux-armv7l-3.9/asap3/Tools/Timing.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,395 copying build/lib.linux-armv7l-3.9/asap3/Tools/niflheim.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,397 copying build/lib.linux-armv7l-3.9/asap3/Tools/SurfaceEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,400 copying build/lib.linux-armv7l-3.9/asap3/Tools/OptimizationDatabase.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,402 copying build/lib.linux-armv7l-3.9/asap3/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,404 copying build/lib.linux-armv7l-3.9/asap3/Tools/AtomicEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,406 copying build/lib.linux-armv7l-3.9/asap3/Tools/ElasticConstants.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,409 copying build/lib.linux-armv7l-3.9/asap3/Tools/AsapFileToTrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,411 copying build/lib.linux-armv7l-3.9/asap3/Tools/MaterialProperties.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T04:42:44,414 copying build/lib.linux-armv7l-3.9/asap3/constraints.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,417 creating build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T04:42:44,418 copying build/lib.linux-armv7l-3.9/asap3/setup/displacementfield.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T04:42:44,422 creating build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,423 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/plane_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,426 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/dislocated.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,428 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,431 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,433 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/quat_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,436 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,439 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/helpers.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,441 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/energy.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,444 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/grain_structures.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T04:42:44,447 copying build/lib.linux-armv7l-3.9/asap3/setup/multidislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T04:42:44,449 copying build/lib.linux-armv7l-3.9/asap3/setup/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T04:42:44,451 copying build/lib.linux-armv7l-3.9/asap3/setup/dislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T04:42:44,454 copying build/lib.linux-armv7l-3.9/asap3/setup/VelocityDistribution.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T04:42:44,456 creating build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,457 copying build/lib.linux-armv7l-3.9/asap3/analysis/findcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,459 copying build/lib.linux-armv7l-3.9/asap3/analysis/localstructure.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,462 copying build/lib.linux-armv7l-3.9/asap3/analysis/clusterposition.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,464 copying build/lib.linux-armv7l-3.9/asap3/analysis/particle.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,466 copying build/lib.linux-armv7l-3.9/asap3/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,468 copying build/lib.linux-armv7l-3.9/asap3/analysis/ptm.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,470 copying build/lib.linux-armv7l-3.9/asap3/analysis/cutcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,472 copying build/lib.linux-armv7l-3.9/asap3/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,475 copying build/lib.linux-armv7l-3.9/asap3/analysis/averagepositions.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T04:42:44,477 copying build/lib.linux-armv7l-3.9/asap3/timing.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,480 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T04:42:44,481 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T04:42:44,483 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Basin.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T04:42:44,486 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T04:42:44,487 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T04:42:44,490 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T04:42:44,492 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T04:42:44,493 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T04:42:44,496 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T04:42:44,498 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T04:42:44,500 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Surface.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T04:42:44,502 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Start.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T04:42:44,504 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T04:42:44,506 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Metropolis.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T04:42:44,508 creating build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T04:42:44,509 copying build/lib.linux-armv7l-3.9/asap3/io/trajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T04:42:44,512 copying build/lib.linux-armv7l-3.9/asap3/io/cpu_setup.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T04:42:44,514 copying build/lib.linux-armv7l-3.9/asap3/io/ReadOldFiles.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T04:42:44,515 copying build/lib.linux-armv7l-3.9/asap3/io/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T04:42:44,517 copying build/lib.linux-armv7l-3.9/asap3/io/bundletrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T04:42:44,521 creating build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T04:42:44,522 copying build/lib.linux-armv7l-3.9/asap3/optimize/fire.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T04:42:44,524 copying build/lib.linux-armv7l-3.9/asap3/optimize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T04:42:44,526 copying build/lib.linux-armv7l-3.9/asap3/optimize/mdmin.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T04:42:44,528 copying build/lib.linux-armv7l-3.9/asap3/optimize/optimize.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T04:42:44,530 creating build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,531 copying build/lib.linux-armv7l-3.9/asap3/Internal/BuiltinPotentials.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,535 copying build/lib.linux-armv7l-3.9/asap3/Internal/checkversion.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,536 copying build/lib.linux-armv7l-3.9/asap3/Internal/OpenKIMcalculator.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,539 copying build/lib.linux-armv7l-3.9/asap3/Internal/ParallelListOfAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,542 copying build/lib.linux-armv7l-3.9/asap3/Internal/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,543 copying build/lib.linux-armv7l-3.9/asap3/Internal/Subject.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,545 copying build/lib.linux-armv7l-3.9/asap3/Internal/Collector.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,548 copying build/lib.linux-armv7l-3.9/asap3/Internal/EMTParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,551 creating build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T04:42:44,552 copying build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T04:42:44,554 copying build/lib.linux-armv7l-3.9/asap3/Internal/CheckArray.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,556 copying build/lib.linux-armv7l-3.9/asap3/Internal/UtilityFunctions.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,558 copying build/lib.linux-armv7l-3.9/asap3/Internal/MonteCarloAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,560 copying build/lib.linux-armv7l-3.9/asap3/Internal/ListOfElements.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,562 copying build/lib.linux-armv7l-3.9/asap3/Internal/Builtins.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,564 copying build/lib.linux-armv7l-3.9/asap3/Internal/Threads.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T04:42:44,566 copying build/lib.linux-armv7l-3.9/asap3/__init__.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,568 copying build/lib.linux-armv7l-3.9/asap3/version.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,570 copying build/lib.linux-armv7l-3.9/asap3/fixepydoc.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,572 copying build/lib.linux-armv7l-3.9/asap3/EMT2011_py.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,575 copying build/lib.linux-armv7l-3.9/asap3/memory.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,577 copying build/lib.linux-armv7l-3.9/asap3/testtools.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,579 copying build/lib.linux-armv7l-3.9/asap3/EMT2013Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,582 copying build/lib.linux-armv7l-3.9/asap3/EMT2011Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,584 copying build/lib.linux-armv7l-3.9/asap3/mpi.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,587 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,589 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T04:42:44,590 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T04:42:44,592 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T04:42:44,594 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T04:42:44,596 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/au.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T04:42:44,598 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/langmuirExpression.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,600 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/AdsCalc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,602 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/clusteratom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,605 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/atommontecarlodata.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,607 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/cluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,610 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,612 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/mc_result.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,614 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/Logger.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,615 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/resizecluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T04:42:44,618 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T04:42:44,619 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/surface.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T04:42:44,622 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T04:42:44,624 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/atom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T04:42:44,627 copying build/lib.linux-armv7l-3.9/asap3/GuptaParameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T04:42:44,630 creating build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,631 copying build/lib.linux-armv7l-3.9/asap3/md/velocitydistribution.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,633 copying build/lib.linux-armv7l-3.9/asap3/md/nvtberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,635 copying build/lib.linux-armv7l-3.9/asap3/md/md.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,637 copying build/lib.linux-armv7l-3.9/asap3/md/npt.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,639 copying build/lib.linux-armv7l-3.9/asap3/md/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,641 copying build/lib.linux-armv7l-3.9/asap3/md/nptberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,643 copying build/lib.linux-armv7l-3.9/asap3/md/langevin.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,645 copying build/lib.linux-armv7l-3.9/asap3/md/verlet.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,647 copying build/lib.linux-armv7l-3.9/asap3/md/verlet_fast.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T04:42:44,649 copying build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-14T04:42:44,866 running install_egg_info 2021-07-14T04:42:44,890 running egg_info 2021-07-14T04:42:44,890 creating asap3.egg-info 2021-07-14T04:42:44,891 writing asap3.egg-info/PKG-INFO 2021-07-14T04:42:44,894 writing dependency_links to asap3.egg-info/dependency_links.txt 2021-07-14T04:42:44,896 writing top-level names to asap3.egg-info/top_level.txt 2021-07-14T04:42:44,898 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T04:42:44,944 reading manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T04:42:44,946 reading manifest template 'MANIFEST.in' 2021-07-14T04:42:45,033 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T04:42:45,034 adding license file 'LICENSE' 2021-07-14T04:42:45,035 adding license file 'LICENSE.LESSER' 2021-07-14T04:42:45,057 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T04:42:45,059 Copying asap3.egg-info to build/bdist.linux-armv7l/wheel/asap3-3.11.3-py3.9.egg-info 2021-07-14T04:42:45,068 running install_scripts 2021-07-14T04:42:45,132 creating build/bdist.linux-armv7l/wheel/asap3-3.11.3.data 2021-07-14T04:42:45,133 creating build/bdist.linux-armv7l/wheel/asap3-3.11.3.data/scripts 2021-07-14T04:42:45,134 copying build/scripts-3.9/asap-qsub -> build/bdist.linux-armv7l/wheel/asap3-3.11.3.data/scripts 2021-07-14T04:42:45,136 copying build/scripts-3.9/asap-python -> build/bdist.linux-armv7l/wheel/asap3-3.11.3.data/scripts 2021-07-14T04:42:45,367 copying build/scripts-3.9/asap-sbatch -> build/bdist.linux-armv7l/wheel/asap3-3.11.3.data/scripts 2021-07-14T04:42:45,369 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.3.data/scripts/asap-qsub to 755 2021-07-14T04:42:45,369 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.3.data/scripts/asap-python to 755 2021-07-14T04:42:45,370 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.3.data/scripts/asap-sbatch to 755 2021-07-14T04:42:45,385 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-14T04:42:45,386 adding license file "LICENSE.LESSER" (matched pattern "LICEN[CS]E*") 2021-07-14T04:42:45,394 creating build/bdist.linux-armv7l/wheel/asap3-3.11.3.dist-info/WHEEL 2021-07-14T04:42:45,397 creating '/tmp/pip-wheel-51mgkytd/asap3-3.11.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T04:42:47,445 adding '_asap_p3.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T04:42:47,530 adding 'asap3/EMT2011Parameters.py' 2021-07-14T04:42:47,533 adding 'asap3/EMT2011_py.py' 2021-07-14T04:42:47,535 adding 'asap3/EMT2013Parameters.py' 2021-07-14T04:42:47,536 adding 'asap3/GuptaParameters.py' 2021-07-14T04:42:47,538 adding 'asap3/__init__.py' 2021-07-14T04:42:47,539 adding 'asap3/constraints.py' 2021-07-14T04:42:47,540 adding 'asap3/fixepydoc.py' 2021-07-14T04:42:47,541 adding 'asap3/memory.py' 2021-07-14T04:42:47,543 adding 'asap3/mpi.py' 2021-07-14T04:42:47,544 adding 'asap3/testtools.py' 2021-07-14T04:42:47,545 adding 'asap3/timing.py' 2021-07-14T04:42:47,546 adding 'asap3/version.py' 2021-07-14T04:42:47,550 adding 'asap3/Internal/BuiltinPotentials.py' 2021-07-14T04:42:47,551 adding 'asap3/Internal/Builtins.py' 2021-07-14T04:42:47,552 adding 'asap3/Internal/CheckArray.py' 2021-07-14T04:42:47,554 adding 'asap3/Internal/Collector.py' 2021-07-14T04:42:47,555 adding 'asap3/Internal/EMTParameters.py' 2021-07-14T04:42:47,557 adding 'asap3/Internal/ListOfElements.py' 2021-07-14T04:42:47,558 adding 'asap3/Internal/MonteCarloAtoms.py' 2021-07-14T04:42:47,560 adding 'asap3/Internal/OpenKIMcalculator.py' 2021-07-14T04:42:47,563 adding 'asap3/Internal/ParallelListOfAtoms.py' 2021-07-14T04:42:47,564 adding 'asap3/Internal/Subject.py' 2021-07-14T04:42:47,565 adding 'asap3/Internal/Threads.py' 2021-07-14T04:42:47,567 adding 'asap3/Internal/UtilityFunctions.py' 2021-07-14T04:42:47,568 adding 'asap3/Internal/__init__.py' 2021-07-14T04:42:47,569 adding 'asap3/Internal/checkversion.py' 2021-07-14T04:42:47,571 adding 'asap3/Internal/Compatibility/__init__.py' 2021-07-14T04:42:47,573 adding 'asap3/MonteCarlo/Base.py' 2021-07-14T04:42:47,574 adding 'asap3/MonteCarlo/Basin.py' 2021-07-14T04:42:47,575 adding 'asap3/MonteCarlo/Metropolis.py' 2021-07-14T04:42:47,576 adding 'asap3/MonteCarlo/Start.py' 2021-07-14T04:42:47,577 adding 'asap3/MonteCarlo/__init__.py' 2021-07-14T04:42:47,580 adding 'asap3/MonteCarlo/Moves/Base.py' 2021-07-14T04:42:47,582 adding 'asap3/MonteCarlo/Moves/Surface.py' 2021-07-14T04:42:47,583 adding 'asap3/MonteCarlo/Moves/__init__.py' 2021-07-14T04:42:47,585 adding 'asap3/MonteCarlo/Moves/Data/__init__.py' 2021-07-14T04:42:47,587 adding 'asap3/MonteCarlo/Moves/Data/fcc.py' 2021-07-14T04:42:47,588 adding 'asap3/MonteCarlo/Moves/Data/symmetry.py' 2021-07-14T04:42:47,590 adding 'asap3/Tools/AsapFileToTrajectory.py' 2021-07-14T04:42:47,591 adding 'asap3/Tools/AtomicEnergies.py' 2021-07-14T04:42:47,593 adding 'asap3/Tools/EMT_two_atom_test.py' 2021-07-14T04:42:47,594 adding 'asap3/Tools/ElasticConstants.py' 2021-07-14T04:42:47,596 adding 'asap3/Tools/MaterialProperties.py' 2021-07-14T04:42:47,597 adding 'asap3/Tools/OptimizationDatabase.py' 2021-07-14T04:42:47,599 adding 'asap3/Tools/SurfaceEnergies.py' 2021-07-14T04:42:47,600 adding 'asap3/Tools/Timing.py' 2021-07-14T04:42:47,601 adding 'asap3/Tools/__init__.py' 2021-07-14T04:42:47,603 adding 'asap3/Tools/niflheim.py' 2021-07-14T04:42:47,605 adding 'asap3/Tools/ParameterOptimization/EMT.py' 2021-07-14T04:42:47,606 adding 'asap3/Tools/ParameterOptimization/GetParameters.py' 2021-07-14T04:42:47,609 adding 'asap3/Tools/ParameterOptimization/Optimization.py' 2021-07-14T04:42:47,610 adding 'asap3/Tools/ParameterOptimization/Performance.py' 2021-07-14T04:42:47,614 adding 'asap3/Tools/ParameterOptimization/Quantities.py' 2021-07-14T04:42:47,616 adding 'asap3/Tools/ParameterOptimization/RGL.py' 2021-07-14T04:42:47,617 adding 'asap3/Tools/ParameterOptimization/Sampling.py' 2021-07-14T04:42:47,625 adding 'asap3/Tools/ParameterOptimization/ScipyFmin.py' 2021-07-14T04:42:47,627 adding 'asap3/Tools/ParameterOptimization/Search.py' 2021-07-14T04:42:47,629 adding 'asap3/Tools/ParameterOptimization/SearchParallel.py' 2021-07-14T04:42:47,630 adding 'asap3/Tools/ParameterOptimization/__init__.py' 2021-07-14T04:42:47,632 adding 'asap3/analysis/__init__.py' 2021-07-14T04:42:47,634 adding 'asap3/analysis/averagepositions.py' 2021-07-14T04:42:47,635 adding 'asap3/analysis/clusterposition.py' 2021-07-14T04:42:47,636 adding 'asap3/analysis/cutcluster.py' 2021-07-14T04:42:47,638 adding 'asap3/analysis/findcluster.py' 2021-07-14T04:42:47,640 adding 'asap3/analysis/localstructure.py' 2021-07-14T04:42:47,641 adding 'asap3/analysis/particle.py' 2021-07-14T04:42:47,643 adding 'asap3/analysis/ptm.py' 2021-07-14T04:42:47,645 adding 'asap3/analysis/rdf.py' 2021-07-14T04:42:47,648 adding 'asap3/io/ReadOldFiles.py' 2021-07-14T04:42:47,649 adding 'asap3/io/__init__.py' 2021-07-14T04:42:47,652 adding 'asap3/io/bundletrajectory.py' 2021-07-14T04:42:47,653 adding 'asap3/io/cpu_setup.py' 2021-07-14T04:42:47,655 adding 'asap3/io/trajectory.py' 2021-07-14T04:42:47,656 adding 'asap3/md/__init__.py' 2021-07-14T04:42:47,658 adding 'asap3/md/langevin.py' 2021-07-14T04:42:47,659 adding 'asap3/md/md.py' 2021-07-14T04:42:47,661 adding 'asap3/md/npt.py' 2021-07-14T04:42:47,662 adding 'asap3/md/nptberendsen.py' 2021-07-14T04:42:47,663 adding 'asap3/md/nvtberendsen.py' 2021-07-14T04:42:47,664 adding 'asap3/md/velocitydistribution.py' 2021-07-14T04:42:47,665 adding 'asap3/md/verlet.py' 2021-07-14T04:42:47,666 adding 'asap3/md/verlet_fast.py' 2021-07-14T04:42:47,668 adding 'asap3/nanoparticle_mc/AdsCalc.py' 2021-07-14T04:42:47,669 adding 'asap3/nanoparticle_mc/Logger.py' 2021-07-14T04:42:47,670 adding 'asap3/nanoparticle_mc/__init__.py' 2021-07-14T04:42:47,672 adding 'asap3/nanoparticle_mc/atommontecarlodata.py' 2021-07-14T04:42:47,675 adding 'asap3/nanoparticle_mc/cluster.py' 2021-07-14T04:42:47,676 adding 'asap3/nanoparticle_mc/clusteratom.py' 2021-07-14T04:42:47,677 adding 'asap3/nanoparticle_mc/langmuirExpression.py' 2021-07-14T04:42:47,679 adding 'asap3/nanoparticle_mc/mc_result.py' 2021-07-14T04:42:47,680 adding 'asap3/nanoparticle_mc/resizecluster.py' 2021-07-14T04:42:47,681 adding 'asap3/nanoparticle_mc/data/__init__.py' 2021-07-14T04:42:47,683 adding 'asap3/nanoparticle_mc/data/au.py' 2021-07-14T04:42:47,684 adding 'asap3/nanoparticle_mc/data/fcc.py' 2021-07-14T04:42:47,686 adding 'asap3/nanoparticle_mc/data/symmetry.py' 2021-07-14T04:42:47,687 adding 'asap3/nanoparticle_mc/montecarlo/__init__.py' 2021-07-14T04:42:47,692 adding 'asap3/nanoparticle_mc/montecarlo/atom.py' 2021-07-14T04:42:47,695 adding 'asap3/nanoparticle_mc/montecarlo/surface.py' 2021-07-14T04:42:47,697 adding 'asap3/optimize/__init__.py' 2021-07-14T04:42:47,698 adding 'asap3/optimize/fire.py' 2021-07-14T04:42:47,699 adding 'asap3/optimize/mdmin.py' 2021-07-14T04:42:47,700 adding 'asap3/optimize/optimize.py' 2021-07-14T04:42:47,702 adding 'asap3/setup/VelocityDistribution.py' 2021-07-14T04:42:47,703 adding 'asap3/setup/__init__.py' 2021-07-14T04:42:47,705 adding 'asap3/setup/dislocation.py' 2021-07-14T04:42:47,707 adding 'asap3/setup/displacementfield.py' 2021-07-14T04:42:47,708 adding 'asap3/setup/multidislocation.py' 2021-07-14T04:42:47,710 adding 'asap3/setup/nanocrystalline/__init__.py' 2021-07-14T04:42:47,711 adding 'asap3/setup/nanocrystalline/dislocated.py' 2021-07-14T04:42:47,712 adding 'asap3/setup/nanocrystalline/energy.py' 2021-07-14T04:42:47,714 adding 'asap3/setup/nanocrystalline/grain_structures.py' 2021-07-14T04:42:47,716 adding 'asap3/setup/nanocrystalline/helpers.py' 2021-07-14T04:42:47,717 adding 'asap3/setup/nanocrystalline/nanocrystalline.py' 2021-07-14T04:42:47,719 adding 'asap3/setup/nanocrystalline/nanocrystalline_orig.py' 2021-07-14T04:42:47,721 adding 'asap3/setup/nanocrystalline/plane_utils.py' 2021-07-14T04:42:47,722 adding 'asap3/setup/nanocrystalline/quat_utils.py' 2021-07-14T04:42:50,027 adding 'asap3-3.11.3.data/scripts/asap-python' 2021-07-14T04:42:50,121 adding 'asap3-3.11.3.data/scripts/asap-qsub' 2021-07-14T04:42:50,122 adding 'asap3-3.11.3.data/scripts/asap-sbatch' 2021-07-14T04:42:50,129 adding 'asap3-3.11.3.dist-info/LICENSE' 2021-07-14T04:42:50,131 adding 'asap3-3.11.3.dist-info/LICENSE.LESSER' 2021-07-14T04:42:50,132 adding 'asap3-3.11.3.dist-info/METADATA' 2021-07-14T04:42:50,133 adding 'asap3-3.11.3.dist-info/WHEEL' 2021-07-14T04:42:50,134 adding 'asap3-3.11.3.dist-info/top_level.txt' 2021-07-14T04:42:50,136 adding 'asap3-3.11.3.dist-info/RECORD' 2021-07-14T04:42:50,238 removing build/bdist.linux-armv7l/wheel 2021-07-14T04:42:50,405 Building wheel for asap3 (setup.py): finished with status 'done' 2021-07-14T04:42:50,512 Created wheel for asap3: filename=asap3-3.11.3-cp39-cp39-linux_armv7l.whl size=8472969 sha256=e95758dfb871df408e46a63c3fe33a331c0fc059862d42b5d0ee45d5cbba4a26 2021-07-14T04:42:50,512 Stored in directory: /tmp/pip-ephem-wheel-cache-vxpuc24a/wheels/a2/72/07/aa3a1803b75d85d354a78f3fb9a8149ce241d5375b6ba4e3f8 2021-07-14T04:42:50,530 Successfully built asap3 2021-07-14T04:42:50,812 Removed build tracker: '/tmp/pip-req-tracker-olv0lfuc'