2021-07-14T05:19:59,625 Created temporary directory: /tmp/pip-ephem-wheel-cache-7lucoe8t
2021-07-14T05:19:59,628 Created temporary directory: /tmp/pip-req-tracker-wwuknbgk
2021-07-14T05:19:59,628 Initialized build tracking at /tmp/pip-req-tracker-wwuknbgk
2021-07-14T05:19:59,628 Created build tracker: /tmp/pip-req-tracker-wwuknbgk
2021-07-14T05:19:59,629 Entered build tracker: /tmp/pip-req-tracker-wwuknbgk
2021-07-14T05:19:59,629 Created temporary directory: /tmp/pip-wheel-sp2ukhkp
2021-07-14T05:19:59,659 1 location(s) to search for versions of clusgeo:
2021-07-14T05:19:59,659 * https://pypi.org/simple/clusgeo/
2021-07-14T05:19:59,659 Fetching project page and analyzing links: https://pypi.org/simple/clusgeo/
2021-07-14T05:19:59,660 Getting page https://pypi.org/simple/clusgeo/
2021-07-14T05:19:59,661 Found index url https://pypi.org/simple
2021-07-14T05:19:59,754   Found link https://files.pythonhosted.org/packages/be/51/4f5f9e0ee19752e9513404ed346b86a2549e72730a07a446479f7686f3e7/clusgeo-3.0.0.tar.gz#sha256=73fec81eecaf9cc68e8850098c74ecb35b6acbca34c42131425197585316b305 (from https://pypi.org/simple/clusgeo/) (requires-python:>=2.2, <4), version: 3.0.0
2021-07-14T05:19:59,755   Found link https://files.pythonhosted.org/packages/5f/f2/fd3dc1a466639d36b30855c479764cae86cf4a17cc7726767857f2fdc66d/clusgeo-3.0.1.tar.gz#sha256=57017504bd3f118ec8e93f43a588e6b6b11fcb459f121dad02e766a2160c9b98 (from https://pypi.org/simple/clusgeo/) (requires-python:>=2.2, <4), version: 3.0.1
2021-07-14T05:19:59,756   Found link https://files.pythonhosted.org/packages/e6/9c/2d069ce91a0013515dee0876fef4cc3f92747abadc95214ee1f9130d3d2f/clusgeo-3.0.2.tar.gz#sha256=84b739fb6306cc159d18677da7ba24e015a5851f789a53d90c77cfc0cd21a438 (from https://pypi.org/simple/clusgeo/), version: 3.0.2
2021-07-14T05:19:59,756   Found link https://files.pythonhosted.org/packages/be/2b/01029b0128284157893d9ce8cd9beab576526154c55e047ac9812f2f9e50/clusgeo-3.0.3.tar.gz#sha256=c294e0151e543d713458c6344515c221812082620dd1cb4cf871437807b355f0 (from https://pypi.org/simple/clusgeo/), version: 3.0.3
2021-07-14T05:19:59,756   Found link https://files.pythonhosted.org/packages/08/b3/5fbb592896d50172c8d42b368decb9a6cbfc8d3d6828a4df2e2e5b966205/clusgeo-3.0.4.tar.gz#sha256=1f56f2394c1e22227cccf1cf89fb2ed2d9ac7bdfa79e2d44c16d1d3864b83e3a (from https://pypi.org/simple/clusgeo/), version: 3.0.4
2021-07-14T05:19:59,756   Found link https://files.pythonhosted.org/packages/3c/da/6cd5e94d0ddc08a156ee0b3baa7991f5e4618259af2569846723d1799ec4/clusgeo-3.0.5.tar.gz#sha256=ad265b0639ed4c035c075e1021bfb4bb605f265a2f6b46081b1e443e42e28cd9 (from https://pypi.org/simple/clusgeo/), version: 3.0.5
2021-07-14T05:19:59,757   Found link https://files.pythonhosted.org/packages/42/6a/38c2efc35bf20ac4a3e9bee6ba7f3d13b7d250ac97e06e9496ef8050f341/clusgeo-3.0.6.tar.gz#sha256=d26c6c06a46be3bbe737e3b5d06ba9263e47d539efb9311d3868acdfbac257bb (from https://pypi.org/simple/clusgeo/), version: 3.0.6
2021-07-14T05:19:59,757   Found link https://files.pythonhosted.org/packages/db/bd/aa1271fe51883a9714005fcc8eb6814e8df5daedb0a596fc84c9d1941768/clusgeo-3.0.7.tar.gz#sha256=887d6e848adcf746b4091bc97a3562e36e9aa984cc4c9a5dabd5d0641e720923 (from https://pypi.org/simple/clusgeo/), version: 3.0.7
2021-07-14T05:19:59,757   Found link https://files.pythonhosted.org/packages/a5/a2/0c666d0426ab4060f60e7a2ff33b27c79bdffc9b760807182016266d7a18/clusgeo-4.0.0.tar.gz#sha256=c14a3949f3e648f89afc43d479434a238dbf8c4c985c59e7fc18f242efd4f04d (from https://pypi.org/simple/clusgeo/), version: 4.0.0
2021-07-14T05:19:59,758   Found link https://files.pythonhosted.org/packages/7c/fb/0a2bc7ab3d0e19b7d5ccb23133c19eb4ee0ace468fa8cb3b2198d106f3b7/clusgeo-4.0.1.tar.gz#sha256=20c5dde16c650cffd71fdd8829da428222a423412ef04bf1da9e717fd76abdb7 (from https://pypi.org/simple/clusgeo/), version: 4.0.1
2021-07-14T05:19:59,758   Found link https://files.pythonhosted.org/packages/4d/02/2b57407a2f1ea0671aa40b964de7614a137f16b2be254059af1e9d7e9f76/clusgeo-4.0.2.tar.gz#sha256=28b18fcb0b2913a78b9950336001b6350efec0e046ed8f736355d4ff1f092297 (from https://pypi.org/simple/clusgeo/), version: 4.0.2
2021-07-14T05:19:59,758   Found link https://files.pythonhosted.org/packages/40/87/91ae21f2af7dc49cd5b08b6b1c481d8395a21c63f8e940b741bed40f4afe/clusgeo-4.0.3.tar.gz#sha256=d62304ef63a7111f77948c1a0bdf0cb7f24fa34b16daddf359dd96bc20b1ce04 (from https://pypi.org/simple/clusgeo/), version: 4.0.3
2021-07-14T05:19:59,759   Found link https://files.pythonhosted.org/packages/07/2b/ab268121ba11bacdc9f77198a2a771e121f382669526049aeec0d32df3e3/clusgeo-4.1.0.tar.gz#sha256=93f3339074ce99267baf2c17a0896ffef5fcd6366d8f311acb42757e4aef20ea (from https://pypi.org/simple/clusgeo/) (requires-python:>=2.2, <4), version: 4.1.0
2021-07-14T05:19:59,759 Skipping link: not a file: https://pypi.org/simple/clusgeo/
2021-07-14T05:19:59,779 Given no hashes to check 1 links for project 'clusgeo': discarding no candidates
2021-07-14T05:19:59,798 Collecting clusgeo==4.1.0
2021-07-14T05:19:59,799   Created temporary directory: /tmp/pip-unpack-nf7jbwcf
2021-07-14T05:19:59,978   Downloading clusgeo-4.1.0.tar.gz (21 kB)
2021-07-14T05:20:00,043   Added clusgeo==4.1.0 from https://files.pythonhosted.org/packages/07/2b/ab268121ba11bacdc9f77198a2a771e121f382669526049aeec0d32df3e3/clusgeo-4.1.0.tar.gz#sha256=93f3339074ce99267baf2c17a0896ffef5fcd6366d8f311acb42757e4aef20ea to build tracker '/tmp/pip-req-tracker-wwuknbgk'
2021-07-14T05:20:00,044     Running setup.py (path:/tmp/pip-wheel-sp2ukhkp/clusgeo_4bddd3c61df24b36bc4e01cd46bfa5bc/setup.py) egg_info for package clusgeo
2021-07-14T05:20:00,044     Created temporary directory: /tmp/pip-pip-egg-info-odhvnsum
2021-07-14T05:20:00,045     Running command python setup.py egg_info
2021-07-14T05:20:01,144     running egg_info
2021-07-14T05:20:01,146     creating /tmp/pip-pip-egg-info-odhvnsum/clusgeo.egg-info
2021-07-14T05:20:01,147     writing /tmp/pip-pip-egg-info-odhvnsum/clusgeo.egg-info/PKG-INFO
2021-07-14T05:20:01,149     writing dependency_links to /tmp/pip-pip-egg-info-odhvnsum/clusgeo.egg-info/dependency_links.txt
2021-07-14T05:20:01,151     writing requirements to /tmp/pip-pip-egg-info-odhvnsum/clusgeo.egg-info/requires.txt
2021-07-14T05:20:01,152     writing top-level names to /tmp/pip-pip-egg-info-odhvnsum/clusgeo.egg-info/top_level.txt
2021-07-14T05:20:01,154     writing manifest file '/tmp/pip-pip-egg-info-odhvnsum/clusgeo.egg-info/SOURCES.txt'
2021-07-14T05:20:01,508     reading manifest file '/tmp/pip-pip-egg-info-odhvnsum/clusgeo.egg-info/SOURCES.txt'
2021-07-14T05:20:01,509     reading manifest template 'MANIFEST.in'
2021-07-14T05:20:01,510     adding license file 'LICENSE'
2021-07-14T05:20:01,512     writing manifest file '/tmp/pip-pip-egg-info-odhvnsum/clusgeo.egg-info/SOURCES.txt'
2021-07-14T05:20:01,594   Source in /tmp/pip-wheel-sp2ukhkp/clusgeo_4bddd3c61df24b36bc4e01cd46bfa5bc has version 4.1.0, which satisfies requirement clusgeo==4.1.0 from https://files.pythonhosted.org/packages/07/2b/ab268121ba11bacdc9f77198a2a771e121f382669526049aeec0d32df3e3/clusgeo-4.1.0.tar.gz#sha256=93f3339074ce99267baf2c17a0896ffef5fcd6366d8f311acb42757e4aef20ea
2021-07-14T05:20:01,595   Removed clusgeo==4.1.0 from https://files.pythonhosted.org/packages/07/2b/ab268121ba11bacdc9f77198a2a771e121f382669526049aeec0d32df3e3/clusgeo-4.1.0.tar.gz#sha256=93f3339074ce99267baf2c17a0896ffef5fcd6366d8f311acb42757e4aef20ea from build tracker '/tmp/pip-req-tracker-wwuknbgk'
2021-07-14T05:20:01,603 Created temporary directory: /tmp/pip-unpack-na_hpblg
2021-07-14T05:20:01,603 Building wheels for collected packages: clusgeo
2021-07-14T05:20:01,608   Created temporary directory: /tmp/pip-wheel-k4nfn306
2021-07-14T05:20:01,608   Building wheel for clusgeo (setup.py): started
2021-07-14T05:20:01,609   Destination directory: /tmp/pip-wheel-k4nfn306
2021-07-14T05:20:01,609   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-sp2ukhkp/clusgeo_4bddd3c61df24b36bc4e01cd46bfa5bc/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-sp2ukhkp/clusgeo_4bddd3c61df24b36bc4e01cd46bfa5bc/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-k4nfn306
2021-07-14T05:20:02,737   running bdist_wheel
2021-07-14T05:20:02,898   running build
2021-07-14T05:20:02,899   running build_py
2021-07-14T05:20:03,039   creating build
2021-07-14T05:20:03,040   creating build/lib.linux-armv7l-3.9
2021-07-14T05:20:03,041   creating build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T05:20:03,042   copying clusgeo/build.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T05:20:03,045   copying clusgeo/cluster.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T05:20:03,048   copying clusgeo/__init__.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T05:20:03,050   copying clusgeo/delaunay.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T05:20:03,053   copying clusgeo/utils.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T05:20:03,057   running build_ext
2021-07-14T05:20:03,062   building 'lib.libclusgeo3' extension
2021-07-14T05:20:03,063   creating build/temp.linux-armv7l-3.9
2021-07-14T05:20:03,064   creating build/temp.linux-armv7l-3.9/src
2021-07-14T05:20:03,065   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/clusGeo3.c -o build/temp.linux-armv7l-3.9/src/clusGeo3.o -O3 -std=c99
2021-07-14T05:20:03,181   src/clusGeo3.c: In function ‘findSurf’:
2021-07-14T05:20:03,182   src/clusGeo3.c:56:7: warning: unused variable ‘maxAtomIndx’ [-Wunused-variable]
2021-07-14T05:20:03,182      56 |   int maxAtomIndx;  double minVal;  int minAtomsI;
2021-07-14T05:20:03,182         |       ^~~~~~~~~~~
2021-07-14T05:20:03,182   src/clusGeo3.c:55:8: warning: unused variable ‘isSurf’ [-Wunused-variable]
2021-07-14T05:20:03,182      55 |   int* isSurf = (int*) malloc(sizeof(int)*size);
2021-07-14T05:20:03,183         |        ^~~~~~
2021-07-14T05:20:03,183   src/clusGeo3.c:53:10: warning: unused variable ‘xPosInit’ [-Wunused-variable]
2021-07-14T05:20:03,183      53 |   double xPosInit = xPos; double yPosInit = yPos; double zPosInit = zPos;
2021-07-14T05:20:03,183         |          ^~~~~~~~
2021-07-14T05:20:03,184   src/clusGeo3.c: In function ‘getEta1’:
2021-07-14T05:20:03,184   src/clusGeo3.c:92:10: warning: unused variable ‘distBuf’ [-Wunused-variable]
2021-07-14T05:20:03,184      92 |   double distBuf;
2021-07-14T05:20:03,184         |          ^~~~~~~
2021-07-14T05:20:03,311   src/clusGeo3.c: In function ‘findSurf’:
2021-07-14T05:20:03,312   src/clusGeo3.c:68:36: warning: ‘minAtomsI’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-14T05:20:03,312      68 |             surfAtomsBuff[marcher] = minAtomsI;
2021-07-14T05:20:03,312         |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2021-07-14T05:20:03,948   creating build/lib.linux-armv7l-3.9/lib
2021-07-14T05:20:03,951   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/clusGeo3.o -lm -o build/lib.linux-armv7l-3.9/lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so
2021-07-14T05:20:04,086   installing to build/bdist.linux-armv7l/wheel
2021-07-14T05:20:04,086   running install
2021-07-14T05:20:04,088   running install_lib
2021-07-14T05:20:04,093   creating build/bdist.linux-armv7l
2021-07-14T05:20:04,094   creating build/bdist.linux-armv7l/wheel
2021-07-14T05:20:04,096   creating build/bdist.linux-armv7l/wheel/lib
2021-07-14T05:20:04,097   copying build/lib.linux-armv7l-3.9/lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lib
2021-07-14T05:20:04,102   creating build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T05:20:04,103   copying build/lib.linux-armv7l-3.9/clusgeo/build.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T05:20:04,106   copying build/lib.linux-armv7l-3.9/clusgeo/cluster.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T05:20:04,109   copying build/lib.linux-armv7l-3.9/clusgeo/__init__.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T05:20:04,111   copying build/lib.linux-armv7l-3.9/clusgeo/delaunay.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T05:20:04,114   copying build/lib.linux-armv7l-3.9/clusgeo/utils.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T05:20:04,116   running install_egg_info
2021-07-14T05:20:04,141   running egg_info
2021-07-14T05:20:04,143   writing clusgeo.egg-info/PKG-INFO
2021-07-14T05:20:04,145   writing dependency_links to clusgeo.egg-info/dependency_links.txt
2021-07-14T05:20:04,147   writing requirements to clusgeo.egg-info/requires.txt
2021-07-14T05:20:04,148   writing top-level names to clusgeo.egg-info/top_level.txt
2021-07-14T05:20:04,152   reading manifest file 'clusgeo.egg-info/SOURCES.txt'
2021-07-14T05:20:04,154   reading manifest template 'MANIFEST.in'
2021-07-14T05:20:04,156   adding license file 'LICENSE'
2021-07-14T05:20:04,158   writing manifest file 'clusgeo.egg-info/SOURCES.txt'
2021-07-14T05:20:04,159   Copying clusgeo.egg-info to build/bdist.linux-armv7l/wheel/clusgeo-4.1.0-py3.9.egg-info
2021-07-14T05:20:04,170   running install_scripts
2021-07-14T05:20:04,251   creating build/bdist.linux-armv7l/wheel/clusgeo-4.1.0.dist-info/WHEEL
2021-07-14T05:20:04,254   creating '/tmp/pip-wheel-k4nfn306/clusgeo-4.1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T05:20:04,257   adding 'clusgeo/__init__.py'
2021-07-14T05:20:04,260   adding 'clusgeo/build.py'
2021-07-14T05:20:04,263   adding 'clusgeo/cluster.py'
2021-07-14T05:20:04,266   adding 'clusgeo/delaunay.py'
2021-07-14T05:20:04,268   adding 'clusgeo/utils.py'
2021-07-14T05:20:04,277   adding 'lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T05:20:04,279   adding 'clusgeo-4.1.0.dist-info/LICENSE'
2021-07-14T05:20:04,281   adding 'clusgeo-4.1.0.dist-info/METADATA'
2021-07-14T05:20:04,282   adding 'clusgeo-4.1.0.dist-info/WHEEL'
2021-07-14T05:20:04,283   adding 'clusgeo-4.1.0.dist-info/top_level.txt'
2021-07-14T05:20:04,284   adding 'clusgeo-4.1.0.dist-info/RECORD'
2021-07-14T05:20:04,286   removing build/bdist.linux-armv7l/wheel
2021-07-14T05:20:04,379   Building wheel for clusgeo (setup.py): finished with status 'done'
2021-07-14T05:20:04,381   Created wheel for clusgeo: filename=clusgeo-4.1.0-cp39-cp39-linux_armv7l.whl size=34257 sha256=d748451d0c1c2d25db51f83c91789a1075afa88aa9537178ec4eaaaa3eb49fe6
2021-07-14T05:20:04,382   Stored in directory: /tmp/pip-ephem-wheel-cache-7lucoe8t/wheels/5a/43/b0/42bfba30afe3b8380621a80e4c54912629401d698d34beddbe
2021-07-14T05:20:04,394 Successfully built clusgeo
2021-07-14T05:20:04,398 Removed build tracker: '/tmp/pip-req-tracker-wwuknbgk'