2021-07-14T06:51:17,093 Created temporary directory: /tmp/pip-ephem-wheel-cache-zu57ftwo 2021-07-14T06:51:17,096 Created temporary directory: /tmp/pip-req-tracker-9h83ccnu 2021-07-14T06:51:17,097 Initialized build tracking at /tmp/pip-req-tracker-9h83ccnu 2021-07-14T06:51:17,097 Created build tracker: /tmp/pip-req-tracker-9h83ccnu 2021-07-14T06:51:17,097 Entered build tracker: /tmp/pip-req-tracker-9h83ccnu 2021-07-14T06:51:17,098 Created temporary directory: /tmp/pip-wheel-tpf_5sm3 2021-07-14T06:51:17,127 1 location(s) to search for versions of asap3: 2021-07-14T06:51:17,127 * https://pypi.org/simple/asap3/ 2021-07-14T06:51:17,128 Fetching project page and analyzing links: https://pypi.org/simple/asap3/ 2021-07-14T06:51:17,129 Getting page https://pypi.org/simple/asap3/ 2021-07-14T06:51:17,130 Found index url https://pypi.org/simple 2021-07-14T06:51:17,318 Found link https://files.pythonhosted.org/packages/b3/18/a0fd1f238ed751f8882f815a62354e9e6df3077a9afe218d7754a2fd6a5d/asap3-3.9.6.tar.gz#sha256=9c2895508d6ef7806769ff2bd7d783a895b145543cf906d886192ae0ffc2280d (from https://pypi.org/simple/asap3/), version: 3.9.6 2021-07-14T06:51:17,319 Found link https://files.pythonhosted.org/packages/6d/4b/7623da3d3d4086c524a94def4340bf1e1b4aee1c935420fad6123b20d678/asap3-3.10.0.tar.gz#sha256=4ccb0640ce65acecccd4e871353d6cf94521577507c397623a31e47cf6c624eb (from https://pypi.org/simple/asap3/), version: 3.10.0 2021-07-14T06:51:17,319 Found link https://files.pythonhosted.org/packages/a8/18/3552565db206a682f6c934e8f1291a71095f21b6387d3d2c284c071efe11/asap3-3.10.2.tar.gz#sha256=60ec50c9c50d1b3115edde2ab8f2f42370e08f6eb15c14de0350724d78c47df1 (from https://pypi.org/simple/asap3/), version: 3.10.2 2021-07-14T06:51:17,319 Found link https://files.pythonhosted.org/packages/46/93/a36962deb1049cd6c189fc9944213a7456fc78d7158273a4cf494503e4b0/asap3-3.10.3.tar.gz#sha256=9fabec07296c83fc33c41ac2475e57bd3a2ef688a8364bc3000e70b7195c396e (from https://pypi.org/simple/asap3/), version: 3.10.3 2021-07-14T06:51:17,320 Found link https://files.pythonhosted.org/packages/51/a7/753ffcd46d2da6bb3d07bbe7e2bf320b71e19568b43fc9f3f774cf741f33/asap3-3.10.5.tar.gz#sha256=909682a35b7336bb7deaaa75f697ba26affbff27ad17e3b9fca4a1b3717206c7 (from https://pypi.org/simple/asap3/), version: 3.10.5 2021-07-14T06:51:17,320 Found link https://files.pythonhosted.org/packages/21/ee/fcceabc5e6c11a3398a1039f4ca39c627fafe6176cc6540aedb75f4384f6/asap3-3.10.6.tar.gz#sha256=832ab0e94903efe9ee632db20c56ed605386fc2e62bf863ae3bf81092047ae95 (from https://pypi.org/simple/asap3/), version: 3.10.6 2021-07-14T06:51:17,320 Found link https://files.pythonhosted.org/packages/28/af/109859a068fb8f90b0fa9a594486480b8ae7e9f911593441d8ce82a0f9dd/asap3-3.10.7.tar.gz#sha256=20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773 (from https://pypi.org/simple/asap3/), version: 3.10.7 2021-07-14T06:51:17,321 Found link https://files.pythonhosted.org/packages/2a/66/8dec58eb472f7855d0837b93daa75825a7bc243b773566902d00b043be18/asap3-3.10.8.tar.gz#sha256=a167e89c717cc75c1ff41bb370b9454563c29333e49b7383e668094af547d139 (from https://pypi.org/simple/asap3/), version: 3.10.8 2021-07-14T06:51:17,321 Found link https://files.pythonhosted.org/packages/31/d5/4dea3371c9d83192c450b8905074653276fb33e9f0e20207471cc0025d09/asap3-3.10.10.tar.gz#sha256=58cc70379ff3de727ad2e19882082c40a4780c72ae86e21decd15a8df1e202f0 (from https://pypi.org/simple/asap3/), version: 3.10.10 2021-07-14T06:51:17,321 Found link https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 (from https://pypi.org/simple/asap3/), version: 3.11.3 2021-07-14T06:51:17,321 Found link https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a (from https://pypi.org/simple/asap3/), version: 3.11.5 2021-07-14T06:51:17,322 Found link https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 (from https://pypi.org/simple/asap3/), version: 3.11.6 2021-07-14T06:51:17,322 Found link https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b (from https://pypi.org/simple/asap3/), version: 3.11.8 2021-07-14T06:51:17,322 Found link https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce (from https://pypi.org/simple/asap3/), version: 3.11.9 2021-07-14T06:51:17,323 Found link https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 (from https://pypi.org/simple/asap3/), version: 3.11.10 2021-07-14T06:51:17,323 Found link https://files.pythonhosted.org/packages/3a/52/77063f553b0ded38f99f97c06ee7c81cc9bfeda82b571bdcb25957f80b04/asap3-3.12.1.tar.gz#sha256=6852d7b3f668b8f740f1be7a0b8ead6b831cb1c381b02448e3e9a578d9efb182 (from https://pypi.org/simple/asap3/), version: 3.12.1 2021-07-14T06:51:17,323 Found link https://files.pythonhosted.org/packages/dd/fc/d1953b172e106f00e1cc19c0f830746cb2dec3d1cdeb5ad0ce4347f5a4d9/asap3-3.12.2.tar.gz#sha256=b6c03c790ba4c9f0d231659078c26ce8193fa21314bf2fe4adaa7899d5cd9dbe (from https://pypi.org/simple/asap3/), version: 3.12.2 2021-07-14T06:51:17,323 Found link https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 (from https://pypi.org/simple/asap3/), version: 3.12.3 2021-07-14T06:51:17,324 Found link https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 (from https://pypi.org/simple/asap3/), version: 3.12.7 2021-07-14T06:51:17,324 Found link https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 (from https://pypi.org/simple/asap3/), version: 3.12.8 2021-07-14T06:51:17,324 Skipping link: not a file: https://pypi.org/simple/asap3/ 2021-07-14T06:51:17,345 Given no hashes to check 1 links for project 'asap3': discarding no candidates 2021-07-14T06:51:17,364 Collecting asap3==3.11.5 2021-07-14T06:51:17,365 Created temporary directory: /tmp/pip-unpack-c5tilvr0 2021-07-14T06:51:17,953 Downloading asap3-3.11.5.tar.gz (801 kB) 2021-07-14T06:51:19,103 Added asap3==3.11.5 from https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a to build tracker '/tmp/pip-req-tracker-9h83ccnu' 2021-07-14T06:51:19,104 Running setup.py (path:/tmp/pip-wheel-tpf_5sm3/asap3_41d74f39dbac46c8a804f107eca5675f/setup.py) egg_info for package asap3 2021-07-14T06:51:19,105 Created temporary directory: /tmp/pip-pip-egg-info-gb9g93kg 2021-07-14T06:51:19,106 Running command python setup.py egg_info 2021-07-14T06:51:20,451 Asap version number: 3.11.5 2021-07-14T06:51:20,451 customize-local.py not found - this is OK. 2021-07-14T06:51:20,451 customize-piwheels33.py not found - this is OK. 2021-07-14T06:51:20,452 Reading customization from customize.py 2021-07-14T06:51:20,452 Recording version info into VersionInfo_autogen 2021-07-14T06:51:20,452 CC = arm-linux-gnueabihf-gcc -pthread 2021-07-14T06:51:20,452 CFLAGS = -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 2021-07-14T06:51:20,452 Identifying source files 2021-07-14T06:51:20,453 Identifying Python submodules 2021-07-14T06:51:20,453 running egg_info 2021-07-14T06:51:20,453 creating /tmp/pip-pip-egg-info-gb9g93kg/asap3.egg-info 2021-07-14T06:51:20,454 writing /tmp/pip-pip-egg-info-gb9g93kg/asap3.egg-info/PKG-INFO 2021-07-14T06:51:20,456 writing dependency_links to /tmp/pip-pip-egg-info-gb9g93kg/asap3.egg-info/dependency_links.txt 2021-07-14T06:51:20,458 writing top-level names to /tmp/pip-pip-egg-info-gb9g93kg/asap3.egg-info/top_level.txt 2021-07-14T06:51:20,460 writing manifest file '/tmp/pip-pip-egg-info-gb9g93kg/asap3.egg-info/SOURCES.txt' 2021-07-14T06:51:20,618 reading manifest file '/tmp/pip-pip-egg-info-gb9g93kg/asap3.egg-info/SOURCES.txt' 2021-07-14T06:51:20,620 reading manifest template 'MANIFEST.in' 2021-07-14T06:51:20,679 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T06:51:20,679 adding license file 'LICENSE' 2021-07-14T06:51:20,679 adding license file 'LICENSE.LESSER' 2021-07-14T06:51:20,699 writing manifest file '/tmp/pip-pip-egg-info-gb9g93kg/asap3.egg-info/SOURCES.txt' 2021-07-14T06:51:20,801 Source in /tmp/pip-wheel-tpf_5sm3/asap3_41d74f39dbac46c8a804f107eca5675f has version 3.11.5, which satisfies requirement asap3==3.11.5 from https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a 2021-07-14T06:51:20,802 Removed asap3==3.11.5 from https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a from build tracker '/tmp/pip-req-tracker-9h83ccnu' 2021-07-14T06:51:20,806 Created temporary directory: /tmp/pip-unpack-y2ms6fb1 2021-07-14T06:51:20,807 Building wheels for collected packages: asap3 2021-07-14T06:51:20,811 Created temporary directory: /tmp/pip-wheel-w06zxr69 2021-07-14T06:51:20,811 Building wheel for asap3 (setup.py): started 2021-07-14T06:51:20,812 Destination directory: /tmp/pip-wheel-w06zxr69 2021-07-14T06:51:20,812 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-tpf_5sm3/asap3_41d74f39dbac46c8a804f107eca5675f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-tpf_5sm3/asap3_41d74f39dbac46c8a804f107eca5675f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-w06zxr69 2021-07-14T06:51:21,974 Asap version number: 3.11.5 2021-07-14T06:51:21,975 customize-local.py not found - this is OK. 2021-07-14T06:51:21,975 customize-piwheels33.py not found - this is OK. 2021-07-14T06:51:21,975 Reading customization from customize.py 2021-07-14T06:51:21,978 Identifying source files 2021-07-14T06:51:21,981 Identifying Python submodules 2021-07-14T06:51:22,144 running bdist_wheel 2021-07-14T06:51:22,146 running build 2021-07-14T06:51:22,147 running build_py 2021-07-14T06:51:22,281 creating build 2021-07-14T06:51:22,281 creating build/lib.linux-armv7l-3.9 2021-07-14T06:51:22,282 creating build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,283 copying Python/asap3/testtools.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,285 copying Python/asap3/EMT2013Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,288 copying Python/asap3/version.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,289 copying Python/asap3/fixepydoc.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,291 copying Python/asap3/GuptaParameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,293 copying Python/asap3/mpi.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,295 copying Python/asap3/timing.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,297 copying Python/asap3/memory.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,299 copying Python/asap3/EMT2011Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,301 copying Python/asap3/constraints.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,303 copying Python/asap3/__init__.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,305 copying Python/asap3/EMT2011_py.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T06:51:22,308 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T06:51:22,309 copying Python/asap3/MonteCarlo/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T06:51:22,312 copying Python/asap3/MonteCarlo/Basin.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T06:51:22,314 copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T06:51:22,316 copying Python/asap3/MonteCarlo/Start.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T06:51:22,319 copying Python/asap3/MonteCarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T06:51:22,321 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T06:51:22,322 copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T06:51:22,325 copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T06:51:22,327 copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T06:51:22,330 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T06:51:22,331 copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T06:51:22,334 copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T06:51:22,336 copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T06:51:22,339 creating build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,340 copying Python/asap3/md/md.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,342 copying Python/asap3/md/nvtberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,344 copying Python/asap3/md/langevin.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,346 copying Python/asap3/md/nptberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,348 copying Python/asap3/md/velocitydistribution.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,350 copying Python/asap3/md/verlet_fast.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,352 copying Python/asap3/md/npt.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,354 copying Python/asap3/md/verlet.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,356 copying Python/asap3/md/__init__.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T06:51:22,360 creating build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T06:51:22,361 copying Python/asap3/setup/VelocityDistribution.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T06:51:22,362 copying Python/asap3/setup/dislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T06:51:22,365 copying Python/asap3/setup/displacementfield.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T06:51:22,367 copying Python/asap3/setup/multidislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T06:51:22,369 copying Python/asap3/setup/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T06:51:22,372 creating build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,373 copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,375 copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,376 copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,378 copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,381 copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,383 copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,385 copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,387 copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,389 copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T06:51:22,392 creating build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,393 copying Python/asap3/Internal/EMTParameters.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,396 copying Python/asap3/Internal/ListOfElements.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,398 copying Python/asap3/Internal/Threads.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,400 copying Python/asap3/Internal/checkversion.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,402 copying Python/asap3/Internal/Builtins.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,404 copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,407 copying Python/asap3/Internal/Subject.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,409 copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,411 copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,413 copying Python/asap3/Internal/CheckArray.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,415 copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,418 copying Python/asap3/Internal/Collector.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,420 copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,422 copying Python/asap3/Internal/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T06:51:22,424 creating build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T06:51:22,425 copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T06:51:22,428 creating build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T06:51:22,429 copying Python/asap3/optimize/mdmin.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T06:51:22,431 copying Python/asap3/optimize/fire.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T06:51:22,433 copying Python/asap3/optimize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T06:51:22,435 copying Python/asap3/optimize/optimize.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T06:51:22,438 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,438 copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,441 copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,443 copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,444 copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,447 copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,449 copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,452 copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,453 copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,455 copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T06:51:22,457 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T06:51:22,458 copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T06:51:22,462 copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T06:51:22,464 copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T06:51:22,468 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T06:51:22,468 copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T06:51:22,476 copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T06:51:22,479 copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T06:51:22,482 copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T06:51:22,488 creating build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,489 copying Python/asap3/analysis/findcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,495 copying Python/asap3/analysis/rdf.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,499 copying Python/asap3/analysis/clusterposition.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,501 copying Python/asap3/analysis/particle.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,503 copying Python/asap3/analysis/localstructure.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,506 copying Python/asap3/analysis/cutcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,508 copying Python/asap3/analysis/ptm.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,512 copying Python/asap3/analysis/averagepositions.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,514 copying Python/asap3/analysis/__init__.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T06:51:22,517 creating build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,518 copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,520 copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,523 copying Python/asap3/Tools/Timing.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,525 copying Python/asap3/Tools/MaterialProperties.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,528 copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,531 copying Python/asap3/Tools/niflheim.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,533 copying Python/asap3/Tools/ElasticConstants.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,535 copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,537 copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,540 copying Python/asap3/Tools/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T06:51:22,543 creating build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,543 copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,546 copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,549 copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,551 copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,553 copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,557 copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,560 copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,564 copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,566 copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,568 copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,570 copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T06:51:22,573 creating build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T06:51:22,574 copying Python/asap3/io/ReadOldFiles.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T06:51:22,576 copying Python/asap3/io/trajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T06:51:22,578 copying Python/asap3/io/cpu_setup.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T06:51:22,581 copying Python/asap3/io/bundletrajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T06:51:22,583 copying Python/asap3/io/__init__.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T06:51:22,599 running build_ext 2021-07-14T06:51:22,605 building '_asap_p3' extension 2021-07-14T06:51:22,607 creating build/temp.linux-armv7l-3.9 2021-07-14T06:51:22,607 creating build/temp.linux-armv7l-3.9/Basics 2021-07-14T06:51:22,609 creating build/temp.linux-armv7l-3.9/Brenner 2021-07-14T06:51:22,610 creating build/temp.linux-armv7l-3.9/Interface 2021-07-14T06:51:22,611 creating build/temp.linux-armv7l-3.9/PTM 2021-07-14T06:51:22,612 creating build/temp.linux-armv7l-3.9/PTM/qcprot 2021-07-14T06:51:22,613 creating build/temp.linux-armv7l-3.9/PTM/voronoi 2021-07-14T06:51:22,613 creating build/temp.linux-armv7l-3.9/Potentials 2021-07-14T06:51:22,614 creating build/temp.linux-armv7l-3.9/Tools 2021-07-14T06:51:22,615 creating build/temp.linux-armv7l-3.9/VersionInfo_autogen 2021-07-14T06:51:22,616 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/AsapObject.cpp -o build/temp.linux-armv7l-3.9/Basics/AsapObject.o 2021-07-14T06:51:23,716 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Debug.cpp -o build/temp.linux-armv7l-3.9/Basics/Debug.o 2021-07-14T06:51:25,258 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/DynamicAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o 2021-07-14T06:51:27,690 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Exception.cpp -o build/temp.linux-armv7l-3.9/Basics/Exception.o 2021-07-14T06:51:29,870 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImageAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o 2021-07-14T06:51:31,393 In file included from Basics/AsapPython.h:44, 2021-07-14T06:51:31,393 from Basics/ImageAtoms.h:31, 2021-07-14T06:51:31,393 from Basics/ImageAtoms.cpp:27: 2021-07-14T06:51:31,394 Basics/ImageAtoms.cpp: In destructor ‘virtual AsapNS::ImageAtoms::~ImageAtoms()’: 2021-07-14T06:51:31,394 Basics/Exception.h:158:5: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 2021-07-14T06:51:31,394 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T06:51:31,394 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:31,394 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T06:51:31,394 52 | ASSERT(refcount == 0); 2021-07-14T06:51:31,395 | ^~~~~~ 2021-07-14T06:51:31,395 Basics/Exception.h:158:5: note: in C++11 destructors default to ‘noexcept’ 2021-07-14T06:51:31,395 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T06:51:31,395 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:31,395 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T06:51:31,395 52 | ASSERT(refcount == 0); 2021-07-14T06:51:31,396 | ^~~~~~ 2021-07-14T06:51:31,396 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T06:51:31,396 Basics/ImageAtoms.cpp:82:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,396 82 | if (pos.capacity() < nTot) 2021-07-14T06:51:31,396 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T06:51:31,396 In file included from Basics/AsapPython.h:44, 2021-07-14T06:51:31,397 from Basics/ImageAtoms.h:31, 2021-07-14T06:51:31,397 from Basics/ImageAtoms.cpp:27: 2021-07-14T06:51:31,397 Basics/ImageAtoms.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,397 84 | ASSERT(allpositions.size() >= nTot); 2021-07-14T06:51:31,397 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T06:51:31,397 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:31,397 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:31,398 | ^~ 2021-07-14T06:51:31,400 Basics/ImageAtoms.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,401 86 | ASSERT(pos.size() == nTot); 2021-07-14T06:51:31,401 | ~~~~~~~~~~~^~~~~~~ 2021-07-14T06:51:31,401 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:31,401 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:31,401 | ^~ 2021-07-14T06:51:31,401 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T06:51:31,402 Basics/ImageAtoms.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,402 95 | ASSERT(allpositions.size() >= n); 2021-07-14T06:51:31,402 | ~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T06:51:31,402 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:31,402 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:31,402 | ^~ 2021-07-14T06:51:31,403 Basics/ImageAtoms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,403 97 | if (pos.capacity() < n) 2021-07-14T06:51:31,403 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T06:51:31,422 In file included from Basics/AsapPython.h:44, 2021-07-14T06:51:31,422 from Basics/ImageAtoms.h:31, 2021-07-14T06:51:31,422 from Basics/ImageAtoms.cpp:27: 2021-07-14T06:51:31,423 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::make_images(double)’: 2021-07-14T06:51:31,423 Basics/ImageAtoms.cpp:170:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,423 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); 2021-07-14T06:51:31,423 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:31,423 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:31,423 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:31,424 | ^~ 2021-07-14T06:51:31,426 Basics/ImageAtoms.cpp:221:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,426 221 | if (allpositions.capacity() < nSize) 2021-07-14T06:51:31,427 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T06:51:31,427 Basics/ImageAtoms.cpp:223:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,427 223 | if (allnumbers.capacity() < nSize) 2021-07-14T06:51:31,427 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T06:51:31,428 In file included from Basics/AsapPython.h:44, 2021-07-14T06:51:31,428 from Basics/ImageAtoms.h:31, 2021-07-14T06:51:31,428 from Basics/ImageAtoms.cpp:27: 2021-07-14T06:51:31,429 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::update_images()’: 2021-07-14T06:51:31,429 Basics/ImageAtoms.cpp:238:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,429 238 | ASSERT(allpositions.size() <= nSize); 2021-07-14T06:51:31,429 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:51:31,429 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:31,430 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:31,430 | ^~ 2021-07-14T06:51:31,430 Basics/ImageAtoms.cpp:241:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:31,430 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); 2021-07-14T06:51:31,430 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:31,430 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:31,430 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:31,431 | ^~ 2021-07-14T06:51:33,858 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImagePotential.cpp -o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o 2021-07-14T06:51:35,474 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::Vec]’: 2021-07-14T06:51:35,475 Basics/ImagePotential.cpp:93:38: required from here 2021-07-14T06:51:35,475 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:35,475 139 | for (int i = 0; i < orig_map.size(); i++) 2021-07-14T06:51:35,475 | ~~^~~~~~~~~~~~~~~~~ 2021-07-14T06:51:35,481 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::SymTensor]’: 2021-07-14T06:51:35,482 Basics/ImagePotential.cpp:118:45: required from here 2021-07-14T06:51:35,482 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:36,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Langevin.cpp -o build/temp.linux-armv7l-3.9/Basics/Langevin.o 2021-07-14T06:51:39,539 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Matrix3x3.cpp -o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o 2021-07-14T06:51:40,658 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MolecularDynamics.cpp -o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o 2021-07-14T06:51:42,090 In file included from Basics/AsapPython.h:44, 2021-07-14T06:51:42,090 from Basics/MolecularDynamics.h:30, 2021-07-14T06:51:42,090 from Basics/MolecularDynamics.cpp:27: 2021-07-14T06:51:42,091 Basics/MolecularDynamics.cpp: In member function ‘bool AsapNS::MolecularDynamics::CallObservers(PyObject*)’: 2021-07-14T06:51:42,091 Basics/MolecularDynamics.cpp:238:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<_object*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:42,091 238 | ASSERT(n == obs_kwargs.size()); 2021-07-14T06:51:42,091 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:42,091 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:42,091 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:42,092 | ^~ 2021-07-14T06:51:43,355 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MonteCarloAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o 2021-07-14T06:51:45,850 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborCellLocator.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o 2021-07-14T06:51:47,538 Basics/NeighborCellLocator.cpp: In destructor ‘virtual AsapNS::NeighborCellLocator::~NeighborCellLocator()’: 2021-07-14T06:51:47,539 Basics/NeighborCellLocator.cpp:87:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:47,539 87 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T06:51:47,539 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:47,542 In file included from Basics/AsapPython.h:44, 2021-07-14T06:51:47,542 from Basics/NeighborCellLocator.h:35, 2021-07-14T06:51:47,542 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T06:51:47,542 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::MakeList()’: 2021-07-14T06:51:47,543 Basics/NeighborCellLocator.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,543 128 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T06:51:47,543 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T06:51:47,543 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:47,543 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:47,543 | ^~ 2021-07-14T06:51:47,555 Basics/NeighborCellLocator.cpp:313:42: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,555 313 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) 2021-07-14T06:51:47,555 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T06:51:47,555 In file included from Basics/AsapPython.h:44, 2021-07-14T06:51:47,556 from Basics/NeighborCellLocator.h:35, 2021-07-14T06:51:47,556 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T06:51:47,556 Basics/NeighborCellLocator.cpp:324:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,556 324 | ASSERT(cells.size() == nTotalCells[3]); 2021-07-14T06:51:47,556 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T06:51:47,556 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:47,557 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:47,557 | ^~ 2021-07-14T06:51:47,557 Basics/NeighborCellLocator.cpp:325:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:47,557 325 | for (int i = 0; i < cells.size(); i++) 2021-07-14T06:51:47,557 | ~~^~~~~~~~~~~~~~ 2021-07-14T06:51:47,558 Basics/NeighborCellLocator.cpp:361:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:47,558 361 | for (int i = 0; i < cells.size(); i++) 2021-07-14T06:51:47,558 | ~~^~~~~~~~~~~~~~ 2021-07-14T06:51:47,575 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::MakeNeighboringCellLists()’: 2021-07-14T06:51:47,575 Basics/NeighborCellLocator.cpp:476:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:47,575 476 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T06:51:47,575 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:47,575 Basics/NeighborCellLocator.cpp:479:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:47,575 479 | for (int i = 0; i < cells.size(); i++) 2021-07-14T06:51:47,576 | ~~^~~~~~~~~~~~~~ 2021-07-14T06:51:47,630 In file included from Basics/AsapPython.h:44, 2021-07-14T06:51:47,630 from Basics/NeighborCellLocator.h:35, 2021-07-14T06:51:47,631 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T06:51:47,631 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::ScaleAndNormalizePositions()’: 2021-07-14T06:51:47,631 Basics/NeighborCellLocator.cpp:933:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,631 933 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T06:51:47,631 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T06:51:47,631 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:47,632 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:47,632 | ^~ 2021-07-14T06:51:47,632 Basics/NeighborCellLocator.cpp:940:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,632 940 | if (wrappedPositions.capacity() < spsz) 2021-07-14T06:51:47,632 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T06:51:47,632 Basics/NeighborCellLocator.cpp:943:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,633 943 | if (offsetPositions.capacity() < spsz) 2021-07-14T06:51:47,633 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T06:51:47,634 Basics/NeighborCellLocator.cpp:980:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,634 980 | if (wrappedPositions.capacity() < spsz) 2021-07-14T06:51:47,634 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T06:51:47,634 Basics/NeighborCellLocator.cpp:983:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,634 983 | if (scaledOffsetPositions.capacity() < spsz) 2021-07-14T06:51:47,635 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T06:51:47,647 In file included from Basics/AsapPython.h:44, 2021-07-14T06:51:47,647 from Basics/NeighborCellLocator.h:35, 2021-07-14T06:51:47,648 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T06:51:47,648 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::RenormalizePositions()’: 2021-07-14T06:51:47,648 Basics/NeighborCellLocator.cpp:1105:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,648 1105 | ASSERT(referencePositions.size() == nAtoms); 2021-07-14T06:51:47,648 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T06:51:47,648 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:47,649 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:47,649 | ^~ 2021-07-14T06:51:47,649 Basics/NeighborCellLocator.cpp:1106:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,649 1106 | ASSERT(offsetPositions.size() == nAllAtoms); 2021-07-14T06:51:47,649 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T06:51:47,649 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:47,649 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:47,650 | ^~ 2021-07-14T06:51:47,652 Basics/NeighborCellLocator.cpp:1123:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,652 1123 | ASSERT(wrappedPositions.size() == nAllAtoms); 2021-07-14T06:51:47,652 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T06:51:47,652 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:51:47,652 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:51:47,653 | ^~ 2021-07-14T06:51:47,667 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::print_info(int)’: 2021-07-14T06:51:47,668 Basics/NeighborCellLocator.cpp:1254:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,668 1254 | if (referencePositions.size() > n) 2021-07-14T06:51:47,668 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T06:51:47,669 Basics/NeighborCellLocator.cpp:1256:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,669 1256 | if (wrappedPositions.size() > n) 2021-07-14T06:51:47,670 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T06:51:47,670 Basics/NeighborCellLocator.cpp:1258:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,671 1258 | if (scaledPositions.size() > n) 2021-07-14T06:51:47,671 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T06:51:47,672 Basics/NeighborCellLocator.cpp:1260:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,672 1260 | if (offsetPositions.size() > n) 2021-07-14T06:51:47,672 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T06:51:47,673 Basics/NeighborCellLocator.cpp:1262:36: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,673 1262 | if (scaledOffsetPositions.size() > n) 2021-07-14T06:51:47,673 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T06:51:47,678 Basics/NeighborCellLocator.cpp: In member function ‘virtual long int AsapNS::NeighborCellLocator::PrintMemory() const’: 2021-07-14T06:51:47,679 Basics/NeighborCellLocator.cpp:1294:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:47,679 1294 | if (i->size() > longest) 2021-07-14T06:51:47,679 | ~~~~~~~~~~^~~~~~~~~ 2021-07-14T06:51:54,259 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList.o 2021-07-14T06:51:55,943 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::MakeList()’: 2021-07-14T06:51:55,944 Basics/NeighborList.cpp:126:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:55,944 126 | if (nAllAtoms != nbList.size()) 2021-07-14T06:51:55,944 | ~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T06:51:55,944 Basics/NeighborList.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:55,945 128 | if (fulllists && (nAllAtoms != complNbList.size())) 2021-07-14T06:51:55,945 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:55,965 Basics/NeighborList.cpp:200:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:55,966 200 | if (nbList[i].capacity() < reservedLength) 2021-07-14T06:51:55,966 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T06:51:55,967 Basics/NeighborList.cpp:210:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:51:55,967 210 | if (complNbList[i].capacity() < reservedLength) 2021-07-14T06:51:55,967 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T06:51:55,974 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T06:51:55,974 Basics/NeighborList.cpp:357:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:55,974 357 | if (size < nbList[a1].size()) 2021-07-14T06:51:55,975 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:55,984 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetFullNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T06:51:55,984 Basics/NeighborList.cpp:477:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:55,985 477 | if (size < nbList[a1].size() + complNbList[a1].size()) 2021-07-14T06:51:55,985 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:56,022 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::RemakeLists(const std::set&, std::set&)’: 2021-07-14T06:51:56,022 Basics/NeighborList.cpp:624:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T06:51:56,022 624 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != complNbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T06:51:56,025 Basics/NeighborList.cpp:654:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T06:51:56,025 654 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != nbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T06:51:56,042 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::CheckFullListConsistency(std::string, bool)’: 2021-07-14T06:51:56,042 Basics/NeighborList.cpp:756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T06:51:56,042 756 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T06:51:56,043 Basics/NeighborList.cpp:758:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T06:51:56,043 758 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T06:51:56,055 Basics/NeighborList.cpp:795:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T06:51:56,056 795 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T06:51:56,057 Basics/NeighborList.cpp:797:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T06:51:56,057 797 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T06:51:56,068 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::print_info(int)’: 2021-07-14T06:51:56,068 Basics/NeighborList.cpp:834:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:56,068 834 | for (int i = 0; i < nbList[n].size(); i++) 2021-07-14T06:51:56,068 | ~~^~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:56,070 Basics/NeighborList.cpp:840:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:56,071 840 | for (int i = 0; i < complNbList[n].size(); i++) 2021-07-14T06:51:56,071 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:56,081 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::update_translationvectors()’: 2021-07-14T06:51:56,081 Basics/NeighborList.cpp:910:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:51:56,081 910 | for (int i = 0; i < translationTable.size(); i++) 2021-07-14T06:51:56,081 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:57,661 In file included from /usr/include/c++/10/vector:72, 2021-07-14T06:51:57,662 from Basics/AtomsBasis.h:33, 2021-07-14T06:51:57,662 from Basics/Atoms.h:36, 2021-07-14T06:51:57,662 from Basics/NeighborLocator.h:41, 2021-07-14T06:51:57,662 from Basics/NeighborList.h:37, 2021-07-14T06:51:57,662 from Basics/NeighborList.cpp:29: 2021-07-14T06:51:57,662 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T06:51:57,662 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:51:57,663 721 | vector<_Tp, _Alloc>:: 2021-07-14T06:51:57,663 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:57,663 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:51:57,663 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:51:57,755 In file included from /usr/include/c++/10/vector:67, 2021-07-14T06:51:57,756 from Basics/AtomsBasis.h:33, 2021-07-14T06:51:57,756 from Basics/Atoms.h:36, 2021-07-14T06:51:57,756 from Basics/NeighborLocator.h:41, 2021-07-14T06:51:57,756 from Basics/NeighborList.h:37, 2021-07-14T06:51:57,756 from Basics/NeighborList.cpp:29: 2021-07-14T06:51:57,756 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T06:51:57,756 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:51:57,756 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T06:51:57,757 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:57,757 1666 | std::__iterator_category(__first)); 2021-07-14T06:51:57,757 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:57,757 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:51:57,773 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T06:51:57,773 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:51:57,773 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T06:51:57,774 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:57,774 1666 | std::__iterator_category(__first)); 2021-07-14T06:51:57,774 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:51:57,774 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:52:00,702 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList2013.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o 2021-07-14T06:52:02,445 Basics/NeighborList2013.cpp: In member function ‘virtual int AsapNS::NeighborList2013::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T06:52:02,446 Basics/NeighborList2013.cpp:33:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:52:02,446 33 | if (size < nbList[a1].size()) 2021-07-14T06:52:02,446 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:03,084 In file included from /usr/include/c++/10/vector:72, 2021-07-14T06:52:03,084 from Basics/AtomsBasis.h:33, 2021-07-14T06:52:03,084 from Basics/Atoms.h:36, 2021-07-14T06:52:03,084 from Basics/NeighborLocator.h:41, 2021-07-14T06:52:03,084 from Basics/NeighborList.h:37, 2021-07-14T06:52:03,085 from Basics/NeighborList2013.h:11, 2021-07-14T06:52:03,085 from Basics/NeighborList2013.cpp:8: 2021-07-14T06:52:03,085 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T06:52:03,085 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:52:03,085 721 | vector<_Tp, _Alloc>:: 2021-07-14T06:52:03,085 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:03,086 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:52:03,086 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:52:03,176 In file included from /usr/include/c++/10/vector:67, 2021-07-14T06:52:03,177 from Basics/AtomsBasis.h:33, 2021-07-14T06:52:03,177 from Basics/Atoms.h:36, 2021-07-14T06:52:03,177 from Basics/NeighborLocator.h:41, 2021-07-14T06:52:03,177 from Basics/NeighborList.h:37, 2021-07-14T06:52:03,177 from Basics/NeighborList2013.h:11, 2021-07-14T06:52:03,177 from Basics/NeighborList2013.cpp:8: 2021-07-14T06:52:03,177 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T06:52:03,178 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:52:03,178 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T06:52:03,178 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:03,178 1666 | std::__iterator_category(__first)); 2021-07-14T06:52:03,178 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:03,178 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:52:03,192 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T06:52:03,192 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:52:03,193 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T06:52:03,193 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:03,193 1666 | std::__iterator_category(__first)); 2021-07-14T06:52:03,193 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:03,193 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:52:03,713 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NormalAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o 2021-07-14T06:52:05,224 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_numbers(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T06:52:05,224 Basics/NormalAtoms.cpp:410:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:52:05,224 410 | if (numbers.size() != nAtoms+nGhosts) 2021-07-14T06:52:05,224 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T06:52:05,227 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_positions(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T06:52:05,228 Basics/NormalAtoms.cpp:455:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:52:05,228 455 | bool pos_resized = (positions.size() != nAtoms+nGhosts); 2021-07-14T06:52:05,228 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T06:52:05,231 In file included from Basics/AsapPython.h:44, 2021-07-14T06:52:05,231 from Basics/NormalAtoms.cpp:27: 2021-07-14T06:52:05,232 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T06:52:05,232 Basics/NormalAtoms.cpp:513:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:52:05,232 513 | ASSERT(positions.size() == nAtoms + nGhosts); 2021-07-14T06:52:05,232 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:05,232 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:05,232 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:05,233 | ^~ 2021-07-14T06:52:05,233 Basics/NormalAtoms.cpp:514:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:52:05,233 514 | if (pos.capacity() < nAtoms + nGhosts) 2021-07-14T06:52:05,233 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:05,237 Basics/NormalAtoms.cpp:520:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T06:52:05,237 520 | if (pos.capacity() < nAtoms) 2021-07-14T06:52:05,237 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:52:05,238 In file included from Basics/AsapPython.h:44, 2021-07-14T06:52:05,238 from Basics/NormalAtoms.cpp:27: 2021-07-14T06:52:05,238 Basics/NormalAtoms.cpp:523:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T06:52:05,238 523 | ASSERT(pos.size() == nAtoms); 2021-07-14T06:52:05,238 | ~~~~~~~~~~~^~~~~~~~~ 2021-07-14T06:52:05,238 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:05,238 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:05,239 | ^~ 2021-07-14T06:52:05,239 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T06:52:05,239 Basics/NormalAtoms.cpp:535:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:52:05,239 535 | ASSERT(positions.size() >= n); 2021-07-14T06:52:05,239 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T06:52:05,240 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:05,240 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:05,240 | ^~ 2021-07-14T06:52:05,240 Basics/NormalAtoms.cpp:537:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:52:05,240 537 | if (pos.capacity() < n) 2021-07-14T06:52:05,240 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T06:52:06,756 In file included from /usr/include/c++/10/vector:72, 2021-07-14T06:52:06,756 from Basics/AtomsBasis.h:33, 2021-07-14T06:52:06,756 from Basics/NormalAtoms.h:33, 2021-07-14T06:52:06,756 from Basics/NormalAtoms.cpp:29: 2021-07-14T06:52:06,756 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T06:52:06,757 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:52:06,757 721 | vector<_Tp, _Alloc>:: 2021-07-14T06:52:06,757 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:06,757 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:52:06,757 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:52:07,525 In file included from /usr/include/c++/10/vector:67, 2021-07-14T06:52:07,526 from Basics/AtomsBasis.h:33, 2021-07-14T06:52:07,526 from Basics/NormalAtoms.h:33, 2021-07-14T06:52:07,526 from Basics/NormalAtoms.cpp:29: 2021-07-14T06:52:07,526 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T06:52:07,526 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:52:07,526 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T06:52:07,527 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:07,527 1666 | std::__iterator_category(__first)); 2021-07-14T06:52:07,527 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:07,527 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:52:07,527 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:52:07,527 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T06:52:07,527 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:07,527 1666 | std::__iterator_category(__first)); 2021-07-14T06:52:07,528 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:07,528 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:52:08,529 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/RandomNumbers.cpp -o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o 2021-07-14T06:52:10,297 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Timing.cpp -o build/temp.linux-armv7l-3.9/Basics/Timing.o 2021-07-14T06:52:11,935 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Vec.cpp -o build/temp.linux-armv7l-3.9/Basics/Vec.o 2021-07-14T06:52:13,011 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/VelocityVerlet.cpp -o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o 2021-07-14T06:52:15,284 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/BrennerPotential.cpp -o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o 2021-07-14T06:52:18,449 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/bcuint.cpp -o build/temp.linux-armv7l-3.9/Brenner/bcuint.o 2021-07-14T06:52:20,866 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/caguts.cpp -o build/temp.linux-armv7l-3.9/Brenner/caguts.o 2021-07-14T06:52:23,688 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/expand.cpp -o build/temp.linux-armv7l-3.9/Brenner/expand.o 2021-07-14T06:52:24,902 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/inter2d_iv.cpp -o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o 2021-07-14T06:52:25,005 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/mtable.cpp -o build/temp.linux-armv7l-3.9/Brenner/mtable.o 2021-07-14T06:52:27,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/pibond.cpp -o build/temp.linux-armv7l-3.9/Brenner/pibond.o 2021-07-14T06:52:31,790 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radic.cpp -o build/temp.linux-armv7l-3.9/Brenner/radic.o 2021-07-14T06:52:34,159 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radicdata.cpp -o build/temp.linux-armv7l-3.9/Brenner/radicdata.o 2021-07-14T06:52:34,628 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/sili_germ.cpp -o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o 2021-07-14T06:52:37,177 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/spgch.cpp -o build/temp.linux-armv7l-3.9/Brenner/spgch.o 2021-07-14T06:52:39,150 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/AsapSerial.cpp -o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o 2021-07-14T06:52:40,931 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/DynamicsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o 2021-07-14T06:52:42,404 In file included from Basics/AsapPython.h:44, 2021-07-14T06:52:42,404 from Interface/DynamicsInterface.h:29, 2021-07-14T06:52:42,404 from Interface/DynamicsInterface.cpp:26: 2021-07-14T06:52:42,404 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T06:52:42,404 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:42,405 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T06:52:42,405 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:42,405 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:42,405 | ^~ 2021-07-14T06:52:42,405 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T06:52:42,406 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:42,406 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T06:52:42,406 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:42,406 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:42,406 | ^~ 2021-07-14T06:52:42,413 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T06:52:42,414 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:42,414 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T06:52:42,414 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:42,414 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:42,414 | ^~ 2021-07-14T06:52:42,415 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T06:52:42,415 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:42,416 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T06:52:42,416 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:42,416 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:42,416 | ^~ 2021-07-14T06:52:42,426 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T06:52:42,426 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:42,426 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T06:52:42,426 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:42,426 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:42,427 | ^~ 2021-07-14T06:52:42,432 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_VelocityVerletInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:42,432 Interface/DynamicsInterface.cpp:78:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,432 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T06:52:42,432 | ^~~~~~~ 2021-07-14T06:52:42,432 Interface/DynamicsInterface.cpp:78:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,432 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T06:52:42,433 | ^~~~~~ 2021-07-14T06:52:42,433 Interface/DynamicsInterface.cpp:78:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,433 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T06:52:42,433 | ^~~~~~~~~~ 2021-07-14T06:52:42,434 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_LangevinInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:42,434 Interface/DynamicsInterface.cpp:116:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,434 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T06:52:42,434 | ^~~~~~~ 2021-07-14T06:52:42,434 Interface/DynamicsInterface.cpp:116:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,434 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T06:52:42,434 | ^~~~~~ 2021-07-14T06:52:42,435 Interface/DynamicsInterface.cpp:116:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,435 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T06:52:42,435 | ^~~~~~~~~~ 2021-07-14T06:52:42,435 Interface/DynamicsInterface.cpp:116:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,435 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T06:52:42,435 | ^~~~~~~ 2021-07-14T06:52:42,435 Interface/DynamicsInterface.cpp:116:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,436 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T06:52:42,436 | ^~~~~~~ 2021-07-14T06:52:42,436 Interface/DynamicsInterface.cpp:116:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,436 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T06:52:42,436 | ^~~~ 2021-07-14T06:52:42,436 Interface/DynamicsInterface.cpp:116:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,436 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T06:52:42,437 | ^~~~ 2021-07-14T06:52:42,437 Interface/DynamicsInterface.cpp:116:87: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,437 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T06:52:42,437 | ^~~~~~~ 2021-07-14T06:52:42,437 Interface/DynamicsInterface.cpp:116:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,437 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T06:52:42,437 | ^~~~~~ 2021-07-14T06:52:42,438 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DynamicsRun(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:42,438 Interface/DynamicsInterface.cpp:162:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,438 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T06:52:42,438 | ^~~~~~~ 2021-07-14T06:52:42,438 Interface/DynamicsInterface.cpp:162:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,438 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T06:52:42,438 | ^~~~~~~~~~~ 2021-07-14T06:52:42,439 Interface/DynamicsInterface.cpp:162:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,439 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T06:52:42,439 | ^~~~~ 2021-07-14T06:52:42,439 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetScalarConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:42,439 Interface/DynamicsInterface.cpp:190:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,439 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,439 | ^~~~~~ 2021-07-14T06:52:42,440 Interface/DynamicsInterface.cpp:190:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,440 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,440 | ^~~~ 2021-07-14T06:52:42,440 Interface/DynamicsInterface.cpp:190:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,440 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,440 | ^~~~ 2021-07-14T06:52:42,441 Interface/DynamicsInterface.cpp:190:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,441 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,441 | ^~~~~~~ 2021-07-14T06:52:42,441 Interface/DynamicsInterface.cpp:190:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,441 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,441 | ^~~~~~ 2021-07-14T06:52:42,441 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetVectorConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:42,442 Interface/DynamicsInterface.cpp:214:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,442 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,442 | ^~~~~~ 2021-07-14T06:52:42,442 Interface/DynamicsInterface.cpp:214:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,442 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,442 | ^~~~ 2021-07-14T06:52:42,442 Interface/DynamicsInterface.cpp:214:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,443 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,443 | ^~~~ 2021-07-14T06:52:42,443 Interface/DynamicsInterface.cpp:214:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,443 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,443 | ^~~~~~~ 2021-07-14T06:52:42,443 Interface/DynamicsInterface.cpp:214:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,443 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T06:52:42,443 | ^~~~~~ 2021-07-14T06:52:42,444 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvGetRandom(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:42,444 Interface/DynamicsInterface.cpp:251:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:42,444 251 | static char *kwlist[] = {"gaussian", NULL}; 2021-07-14T06:52:42,444 | ^~~~~~~~~~ 2021-07-14T06:52:43,145 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o 2021-07-14T06:52:44,596 In file included from Basics/AsapPython.h:44, 2021-07-14T06:52:44,596 from Interface/EMTParameterProviderInterface.cpp:28: 2021-07-14T06:52:44,596 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T06:52:44,596 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:44,596 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T06:52:44,597 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:44,597 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:44,597 | ^~ 2021-07-14T06:52:44,606 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T06:52:44,607 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:44,607 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T06:52:44,607 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:44,607 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:44,607 | ^~ 2021-07-14T06:52:44,615 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T06:52:44,615 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:44,615 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T06:52:44,616 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:44,616 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:44,616 | ^~ 2021-07-14T06:52:44,626 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T06:52:44,626 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:44,626 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T06:52:44,626 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:44,626 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:44,627 | ^~ 2021-07-14T06:52:44,636 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T06:52:44,636 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:44,637 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T06:52:44,637 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:44,637 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:44,637 | ^~ 2021-07-14T06:52:45,032 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ExceptionInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o 2021-07-14T06:52:46,526 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/NeighborLocatorInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o 2021-07-14T06:52:48,010 In file included from Basics/AsapPython.h:44, 2021-07-14T06:52:48,011 from Interface/NeighborLocatorInterface.cpp:27: 2021-07-14T06:52:48,011 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T06:52:48,011 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:48,011 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T06:52:48,011 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:48,012 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:48,012 | ^~ 2021-07-14T06:52:48,021 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T06:52:48,021 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:48,021 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T06:52:48,022 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:48,022 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:48,022 | ^~ 2021-07-14T06:52:48,030 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T06:52:48,030 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:48,030 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T06:52:48,030 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:48,030 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:48,031 | ^~ 2021-07-14T06:52:48,041 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T06:52:48,041 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:48,041 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T06:52:48,041 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:48,041 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:48,042 | ^~ 2021-07-14T06:52:48,051 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T06:52:48,051 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:48,052 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T06:52:48,052 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:48,052 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:48,052 | ^~ 2021-07-14T06:52:48,251 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborList_Py(PyObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:48,251 Interface/NeighborLocatorInterface.cpp:166:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:48,251 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T06:52:48,252 | ^~~~~~ 2021-07-14T06:52:48,252 Interface/NeighborLocatorInterface.cpp:166:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:48,252 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T06:52:48,252 | ^~~~~~~ 2021-07-14T06:52:48,252 Interface/NeighborLocatorInterface.cpp:166:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:48,252 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T06:52:48,252 | ^~~~~~~~~~~~~ 2021-07-14T06:52:48,253 Interface/NeighborLocatorInterface.cpp:166:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:48,253 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T06:52:48,253 | ^~~~~~ 2021-07-14T06:52:48,254 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborCellLocator_Serial(PyObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:48,254 Interface/NeighborLocatorInterface.cpp:218:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:48,254 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T06:52:48,254 | ^~~~~~ 2021-07-14T06:52:48,254 Interface/NeighborLocatorInterface.cpp:218:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:48,255 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T06:52:48,255 | ^~~~~~~ 2021-07-14T06:52:48,255 Interface/NeighborLocatorInterface.cpp:218:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:48,255 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T06:52:48,255 | ^~~~~~~~~~~~~ 2021-07-14T06:52:48,288 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNB(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:48,288 Interface/NeighborLocatorInterface.cpp:395:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:48,289 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T06:52:48,289 | ^~~ 2021-07-14T06:52:48,289 Interface/NeighborLocatorInterface.cpp:395:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:48,289 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T06:52:48,289 | ^~~~~~ 2021-07-14T06:52:50,295 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/OpenMPInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o 2021-07-14T06:52:51,556 Interface/OpenMPInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_set_num_threads(PyObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:51,556 Interface/OpenMPInterface.cpp:82:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:51,557 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T06:52:51,557 | ^~~ 2021-07-14T06:52:51,557 Interface/OpenMPInterface.cpp:82:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:51,557 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T06:52:51,557 | ^~~~~~~~~~~~ 2021-07-14T06:52:51,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PTMInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o 2021-07-14T06:52:53,457 Interface/PTMInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_PTMall(PyObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:53,458 Interface/PTMInterface.cpp:99:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:53,458 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T06:52:53,458 | ^~~~~~~ 2021-07-14T06:52:53,458 Interface/PTMInterface.cpp:99:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:53,458 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T06:52:53,458 | ^~~~~~~~ 2021-07-14T06:52:53,459 Interface/PTMInterface.cpp:99:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:53,459 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T06:52:53,459 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:53,459 Interface/PTMInterface.cpp:100:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:53,459 100 | "calculate_strains", "quick", 2021-07-14T06:52:53,459 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:53,460 Interface/PTMInterface.cpp:100:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:53,460 100 | "calculate_strains", "quick", 2021-07-14T06:52:53,460 | ^~~~~~~ 2021-07-14T06:52:53,460 Interface/PTMInterface.cpp:101:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:53,460 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T06:52:53,460 | ^~~~~~~~~~~~~~~ 2021-07-14T06:52:53,461 Interface/PTMInterface.cpp:101:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:53,461 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T06:52:53,461 | ^~~~~~~~~~~~~~~~~ 2021-07-14T06:52:53,487 In file included from /usr/include/python3.9/Python.h:61, 2021-07-14T06:52:53,487 from Basics/AsapPython.h:38, 2021-07-14T06:52:53,487 from Interface/PTMInterface.h:30, 2021-07-14T06:52:53,487 from Interface/PTMInterface.cpp:1: 2021-07-14T06:52:53,487 Interface/PTMInterface.cpp:303:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:52:53,487 303 | assert(m < indices.size()); 2021-07-14T06:52:53,487 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T06:52:53,488 Interface/PTMInterface.cpp:305:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:52:53,488 305 | assert(idx >= 0 && idx < indices.size()); 2021-07-14T06:52:53,488 | ~~~~^~~~~~~~~~~~~~~~ 2021-07-14T06:52:53,711 Interface/PTMInterface.cpp: At global scope: 2021-07-14T06:52:53,712 Interface/PTMInterface.cpp:11:18: warning: ‘PyObject* error(PyObject*, char*)’ defined but not used [-Wunused-function] 2021-07-14T06:52:53,712 11 | static PyObject* error(PyObject* type, char* msg) 2021-07-14T06:52:53,712 | ^~~~~ 2021-07-14T06:52:55,280 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PotentialInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o 2021-07-14T06:52:56,768 In file included from Basics/AsapPython.h:44, 2021-07-14T06:52:56,768 from Interface/PotentialInterface.cpp:29: 2021-07-14T06:52:56,769 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T06:52:56,769 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:56,769 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T06:52:56,769 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:56,769 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:56,769 | ^~ 2021-07-14T06:52:56,780 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T06:52:56,780 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:56,780 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T06:52:56,780 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:56,780 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:56,781 | ^~ 2021-07-14T06:52:56,791 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T06:52:56,791 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:56,791 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T06:52:56,792 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:56,792 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:56,792 | ^~ 2021-07-14T06:52:56,804 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T06:52:56,804 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:56,805 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T06:52:56,805 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:56,805 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:56,805 | ^~ 2021-07-14T06:52:56,814 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T06:52:56,815 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:52:56,815 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T06:52:56,815 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:52:56,815 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:52:56,815 | ^~ 2021-07-14T06:52:57,071 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,071 Interface/PotentialInterface.cpp:201:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,071 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T06:52:57,071 | ^~~~~~ 2021-07-14T06:52:57,072 Interface/PotentialInterface.cpp:201:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,072 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T06:52:57,072 | ^~~~~~~~~ 2021-07-14T06:52:57,073 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMT2013Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,074 Interface/PotentialInterface.cpp:234:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,074 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T06:52:57,074 | ^~~~~~~~~~~~ 2021-07-14T06:52:57,074 Interface/PotentialInterface.cpp:234:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,074 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T06:52:57,074 | ^~~~~~~~~~~~~~~~~ 2021-07-14T06:52:57,074 Interface/PotentialInterface.cpp:234:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,075 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T06:52:57,075 | ^~~~~~~~~ 2021-07-14T06:52:57,075 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MonteCarloEMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,076 Interface/PotentialInterface.cpp:270:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,076 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T06:52:57,076 | ^~~~~~ 2021-07-14T06:52:57,076 Interface/PotentialInterface.cpp:270:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,076 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T06:52:57,076 | ^~~~~~~~~ 2021-07-14T06:52:57,077 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RGLInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,077 Interface/PotentialInterface.cpp:291:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,077 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T06:52:57,078 | ^~~~~~~~~~ 2021-07-14T06:52:57,078 Interface/PotentialInterface.cpp:291:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,078 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T06:52:57,078 | ^~~ 2021-07-14T06:52:57,078 Interface/PotentialInterface.cpp:291:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,078 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T06:52:57,078 | ^~~ 2021-07-14T06:52:57,079 Interface/PotentialInterface.cpp:291:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,079 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T06:52:57,079 | ^~~ 2021-07-14T06:52:57,079 Interface/PotentialInterface.cpp:291:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,079 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T06:52:57,079 | ^~~~~~ 2021-07-14T06:52:57,079 Interface/PotentialInterface.cpp:291:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,080 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T06:52:57,080 | ^~~~ 2021-07-14T06:52:57,080 Interface/PotentialInterface.cpp:292:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,080 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T06:52:57,080 | ^~~~ 2021-07-14T06:52:57,080 Interface/PotentialInterface.cpp:292:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,080 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T06:52:57,081 | ^~~~ 2021-07-14T06:52:57,081 Interface/PotentialInterface.cpp:292:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,081 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T06:52:57,081 | ^~~~ 2021-07-14T06:52:57,081 Interface/PotentialInterface.cpp:292:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,081 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T06:52:57,081 | ^~~~ 2021-07-14T06:52:57,082 Interface/PotentialInterface.cpp:292:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,082 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T06:52:57,082 | ^~~~ 2021-07-14T06:52:57,082 Interface/PotentialInterface.cpp:292:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,082 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T06:52:57,082 | ^~~~ 2021-07-14T06:52:57,082 Interface/PotentialInterface.cpp:293:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,082 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T06:52:57,083 | ^~~~~ 2021-07-14T06:52:57,083 Interface/PotentialInterface.cpp:293:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,083 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T06:52:57,083 | ^~~~~ 2021-07-14T06:52:57,083 Interface/PotentialInterface.cpp:293:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,083 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T06:52:57,083 | ^~~~~~~~~ 2021-07-14T06:52:57,085 Interface/PotentialInterface.cpp: In function ‘int PyAsap_LennardJonesInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,085 Interface/PotentialInterface.cpp:355:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,086 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T06:52:57,086 | ^~~~~~~~~~~~~ 2021-07-14T06:52:57,086 Interface/PotentialInterface.cpp:355:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,086 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T06:52:57,086 | ^~~~~~~~~~ 2021-07-14T06:52:57,086 Interface/PotentialInterface.cpp:355:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,086 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T06:52:57,087 | ^~~~~~~~~ 2021-07-14T06:52:57,087 Interface/PotentialInterface.cpp:355:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,087 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T06:52:57,087 | ^~~~~~~ 2021-07-14T06:52:57,087 Interface/PotentialInterface.cpp:356:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,087 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T06:52:57,087 | ^~~~~~~~ 2021-07-14T06:52:57,088 Interface/PotentialInterface.cpp:356:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,088 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T06:52:57,088 | ^~~~~~ 2021-07-14T06:52:57,088 Interface/PotentialInterface.cpp:356:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,088 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T06:52:57,088 | ^~~~~~~~~~ 2021-07-14T06:52:57,088 Interface/PotentialInterface.cpp:356:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,089 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T06:52:57,089 | ^~~~~~~~~ 2021-07-14T06:52:57,091 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RahmanStillingerLembergInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,091 Interface/PotentialInterface.cpp:394:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,091 394 | static char *kwlist[] = {"numElements", 2021-07-14T06:52:57,092 | ^~~~~~~~~~~~~ 2021-07-14T06:52:57,092 Interface/PotentialInterface.cpp:395:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,092 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T06:52:57,092 | ^~~~ 2021-07-14T06:52:57,092 Interface/PotentialInterface.cpp:395:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,092 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T06:52:57,092 | ^~~~ 2021-07-14T06:52:57,093 Interface/PotentialInterface.cpp:395:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,093 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T06:52:57,093 | ^~~ 2021-07-14T06:52:57,093 Interface/PotentialInterface.cpp:395:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,093 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T06:52:57,093 | ^~~~ 2021-07-14T06:52:57,093 Interface/PotentialInterface.cpp:395:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,094 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T06:52:57,094 | ^~~~ 2021-07-14T06:52:57,094 Interface/PotentialInterface.cpp:395:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,094 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T06:52:57,094 | ^~~~ 2021-07-14T06:52:57,094 Interface/PotentialInterface.cpp:396:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,094 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T06:52:57,094 | ^~~~ 2021-07-14T06:52:57,094 Interface/PotentialInterface.cpp:396:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,095 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T06:52:57,095 | ^~~~ 2021-07-14T06:52:57,095 Interface/PotentialInterface.cpp:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,095 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T06:52:57,095 | ^~~~ 2021-07-14T06:52:57,095 Interface/PotentialInterface.cpp:396:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,095 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T06:52:57,095 | ^~~~ 2021-07-14T06:52:57,096 Interface/PotentialInterface.cpp:396:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,096 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T06:52:57,096 | ^~~~ 2021-07-14T06:52:57,096 Interface/PotentialInterface.cpp:396:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,096 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T06:52:57,096 | ^~~~ 2021-07-14T06:52:57,096 Interface/PotentialInterface.cpp:397:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,096 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T06:52:57,096 | ^~~~~~~~~~ 2021-07-14T06:52:57,097 Interface/PotentialInterface.cpp:397:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,097 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T06:52:57,097 | ^~~~~~~~ 2021-07-14T06:52:57,097 Interface/PotentialInterface.cpp:397:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,097 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T06:52:57,097 | ^~~~~~ 2021-07-14T06:52:57,097 Interface/PotentialInterface.cpp:397:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,098 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T06:52:57,098 | ^~~~~~~~~ 2021-07-14T06:52:57,098 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterfaceInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,098 Interface/PotentialInterface.cpp:500:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,098 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,098 | ^~~ 2021-07-14T06:52:57,098 Interface/PotentialInterface.cpp:500:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,098 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,099 | ^~~ 2021-07-14T06:52:57,099 Interface/PotentialInterface.cpp:500:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,099 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,099 | ^~~ 2021-07-14T06:52:57,099 Interface/PotentialInterface.cpp:500:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,099 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,099 | ^~~~ 2021-07-14T06:52:57,100 Interface/PotentialInterface.cpp:500:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,100 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,100 | ^~~~ 2021-07-14T06:52:57,100 Interface/PotentialInterface.cpp:500:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,100 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,100 | ^~~~~~~~~ 2021-07-14T06:52:57,100 Interface/PotentialInterface.cpp:501:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,100 501 | "q", "kappa", 2021-07-14T06:52:57,100 | ^~~ 2021-07-14T06:52:57,101 Interface/PotentialInterface.cpp:501:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,101 501 | "q", "kappa", 2021-07-14T06:52:57,101 | ^~~~~~~ 2021-07-14T06:52:57,101 Interface/PotentialInterface.cpp:502:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,101 502 | "D", "alpha", "R0", 2021-07-14T06:52:57,101 | ^~~ 2021-07-14T06:52:57,101 Interface/PotentialInterface.cpp:502:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,101 502 | "D", "alpha", "R0", 2021-07-14T06:52:57,101 | ^~~~~~~ 2021-07-14T06:52:57,102 Interface/PotentialInterface.cpp:502:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,102 502 | "D", "alpha", "R0", 2021-07-14T06:52:57,102 | ^~~~ 2021-07-14T06:52:57,102 Interface/PotentialInterface.cpp:503:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,102 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T06:52:57,102 | ^~~ 2021-07-14T06:52:57,102 Interface/PotentialInterface.cpp:503:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,103 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T06:52:57,103 | ^~~ 2021-07-14T06:52:57,103 Interface/PotentialInterface.cpp:503:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,103 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T06:52:57,103 | ^~~~ 2021-07-14T06:52:57,103 Interface/PotentialInterface.cpp:503:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,103 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T06:52:57,103 | ^~~~~~~~~~~ 2021-07-14T06:52:57,104 Interface/PotentialInterface.cpp:504:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,104 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T06:52:57,104 | ^~~~~~ 2021-07-14T06:52:57,104 Interface/PotentialInterface.cpp:504:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,104 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T06:52:57,104 | ^~~~~~~ 2021-07-14T06:52:57,104 Interface/PotentialInterface.cpp:504:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,104 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T06:52:57,104 | ^~~~~~~~~~~~~~~ 2021-07-14T06:52:57,105 Interface/PotentialInterface.cpp:504:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,105 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T06:52:57,105 | ^~~~~~~~~ 2021-07-14T06:52:57,105 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterface2Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,105 Interface/PotentialInterface.cpp:565:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,105 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,105 | ^~~ 2021-07-14T06:52:57,106 Interface/PotentialInterface.cpp:565:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,106 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,106 | ^~~ 2021-07-14T06:52:57,106 Interface/PotentialInterface.cpp:565:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,106 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,106 | ^~~ 2021-07-14T06:52:57,106 Interface/PotentialInterface.cpp:565:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,106 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,107 | ^~~~ 2021-07-14T06:52:57,107 Interface/PotentialInterface.cpp:565:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,107 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,107 | ^~~~ 2021-07-14T06:52:57,107 Interface/PotentialInterface.cpp:565:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,107 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T06:52:57,107 | ^~~~~~~~~ 2021-07-14T06:52:57,107 Interface/PotentialInterface.cpp:566:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,108 566 | "q", "kappa", 2021-07-14T06:52:57,108 | ^~~ 2021-07-14T06:52:57,108 Interface/PotentialInterface.cpp:566:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,108 566 | "q", "kappa", 2021-07-14T06:52:57,108 | ^~~~~~~ 2021-07-14T06:52:57,108 Interface/PotentialInterface.cpp:567:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,108 567 | "D", "alpha", "R0", 2021-07-14T06:52:57,109 | ^~~ 2021-07-14T06:52:57,109 Interface/PotentialInterface.cpp:567:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,109 567 | "D", "alpha", "R0", 2021-07-14T06:52:57,109 | ^~~~~~~ 2021-07-14T06:52:57,109 Interface/PotentialInterface.cpp:567:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,109 567 | "D", "alpha", "R0", 2021-07-14T06:52:57,109 | ^~~~ 2021-07-14T06:52:57,110 Interface/PotentialInterface.cpp:568:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,110 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T06:52:57,110 | ^~~ 2021-07-14T06:52:57,110 Interface/PotentialInterface.cpp:568:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,110 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T06:52:57,110 | ^~~ 2021-07-14T06:52:57,110 Interface/PotentialInterface.cpp:568:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,111 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T06:52:57,111 | ^~~~ 2021-07-14T06:52:57,111 Interface/PotentialInterface.cpp:568:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,111 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T06:52:57,111 | ^~~~~~~~~~~ 2021-07-14T06:52:57,111 Interface/PotentialInterface.cpp:569:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,111 569 | "E", "rho0", "l0", 2021-07-14T06:52:57,111 | ^~~ 2021-07-14T06:52:57,112 Interface/PotentialInterface.cpp:569:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,112 569 | "E", "rho0", "l0", 2021-07-14T06:52:57,112 | ^~~~~~ 2021-07-14T06:52:57,112 Interface/PotentialInterface.cpp:569:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,112 569 | "E", "rho0", "l0", 2021-07-14T06:52:57,112 | ^~~~ 2021-07-14T06:52:57,112 Interface/PotentialInterface.cpp:570:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,113 570 | "B", "C", 2021-07-14T06:52:57,113 | ^~~ 2021-07-14T06:52:57,113 Interface/PotentialInterface.cpp:570:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,113 570 | "B", "C", 2021-07-14T06:52:57,113 | ^~~ 2021-07-14T06:52:57,113 Interface/PotentialInterface.cpp:571:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,113 571 | "interface_cut", "verbose", NULL}; 2021-07-14T06:52:57,113 | ^~~~~~~~~~~~~~~ 2021-07-14T06:52:57,114 Interface/PotentialInterface.cpp:571:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,114 571 | "interface_cut", "verbose", NULL}; 2021-07-14T06:52:57,114 | ^~~~~~~~~ 2021-07-14T06:52:57,114 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MorseInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,114 Interface/PotentialInterface.cpp:647:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,114 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T06:52:57,114 | ^~~~~~~~~~ 2021-07-14T06:52:57,115 Interface/PotentialInterface.cpp:647:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,115 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T06:52:57,115 | ^~~~~~~~~ 2021-07-14T06:52:57,115 Interface/PotentialInterface.cpp:647:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,115 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T06:52:57,115 | ^~~~~~~ 2021-07-14T06:52:57,115 Interface/PotentialInterface.cpp:647:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,116 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T06:52:57,116 | ^~~~~~ 2021-07-14T06:52:57,116 Interface/PotentialInterface.cpp:648:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,116 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T06:52:57,116 | ^~~~~~ 2021-07-14T06:52:57,116 Interface/PotentialInterface.cpp:648:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,116 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T06:52:57,117 | ^~~~~~~~~~ 2021-07-14T06:52:57,117 Interface/PotentialInterface.cpp:648:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,117 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T06:52:57,117 | ^~~~~~~~~ 2021-07-14T06:52:57,117 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetPotentialEnergy(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:52:57,117 Interface/PotentialInterface.cpp:711:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,117 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T06:52:57,117 | ^~~~~~~ 2021-07-14T06:52:57,118 Interface/PotentialInterface.cpp:711:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:52:57,118 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T06:52:57,118 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T06:52:57,124 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetExtra(AsapNS::PyAsap_PotentialObject*, PyObject*)’: 2021-07-14T06:52:57,124 Interface/PotentialInterface.cpp:863:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:52:57,124 863 | for (int i = 0; i < s1.size(); i++) 2021-07-14T06:52:57,125 | ~~^~~~~~~~~~~ 2021-07-14T06:52:59,768 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PythonConversions.cpp -o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o 2021-07-14T06:53:01,213 In file included from Basics/AsapPython.h:44, 2021-07-14T06:53:01,213 from Interface/PythonConversions.h:30, 2021-07-14T06:53:01,213 from Interface/PythonConversions.cpp:24: 2021-07-14T06:53:01,213 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T06:53:01,213 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:01,214 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T06:53:01,214 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:01,214 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:01,214 | ^~ 2021-07-14T06:53:01,224 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T06:53:01,225 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:01,225 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T06:53:01,225 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:01,225 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:01,225 | ^~ 2021-07-14T06:53:01,234 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T06:53:01,235 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:01,235 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T06:53:01,235 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:01,235 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:01,235 | ^~ 2021-07-14T06:53:01,246 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T06:53:01,246 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:01,246 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T06:53:01,246 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:01,247 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:01,247 | ^~ 2021-07-14T06:53:01,257 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T06:53:01,258 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:01,258 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T06:53:01,258 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:01,258 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:01,258 | ^~ 2021-07-14T06:53:02,173 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/RDFInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o 2021-07-14T06:53:03,721 In file included from Basics/AsapPython.h:44, 2021-07-14T06:53:03,721 from Interface/RDFInterface.h:30, 2021-07-14T06:53:03,721 from Interface/RDFInterface.cpp:27: 2021-07-14T06:53:03,721 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T06:53:03,722 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:03,722 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T06:53:03,722 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:03,722 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:03,722 | ^~ 2021-07-14T06:53:03,731 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T06:53:03,732 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:03,732 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T06:53:03,732 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:03,732 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:03,732 | ^~ 2021-07-14T06:53:03,739 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T06:53:03,740 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:03,740 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T06:53:03,740 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:03,740 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:03,740 | ^~ 2021-07-14T06:53:03,750 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T06:53:03,751 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:03,751 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T06:53:03,751 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:03,751 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:03,751 | ^~ 2021-07-14T06:53:03,761 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T06:53:03,761 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:03,761 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T06:53:03,761 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:03,762 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:03,762 | ^~ 2021-07-14T06:53:05,694 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ToolsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o 2021-07-14T06:53:07,170 In file included from Basics/AsapPython.h:44, 2021-07-14T06:53:07,170 from Interface/ToolsInterface.cpp:27: 2021-07-14T06:53:07,170 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T06:53:07,171 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:07,171 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T06:53:07,171 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:07,171 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:07,171 | ^~ 2021-07-14T06:53:07,180 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T06:53:07,181 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:07,181 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T06:53:07,181 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:07,181 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:07,181 | ^~ 2021-07-14T06:53:07,189 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T06:53:07,190 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:07,190 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T06:53:07,190 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:07,190 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:07,190 | ^~ 2021-07-14T06:53:07,200 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T06:53:07,200 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:07,200 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T06:53:07,201 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:07,201 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:07,201 | ^~ 2021-07-14T06:53:07,210 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T06:53:07,211 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:53:07,211 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T06:53:07,211 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:07,211 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:07,211 | ^~ 2021-07-14T06:53:07,406 Interface/ToolsInterface.cpp: In function ‘int AsapNS::PyAsap_FullCNAInit(AsapNS::PyAsap_FullCNAObject*, PyObject*, PyObject*)’: 2021-07-14T06:53:07,407 Interface/ToolsInterface.cpp:92:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:53:07,407 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T06:53:07,407 | ^~~~~~~ 2021-07-14T06:53:07,407 Interface/ToolsInterface.cpp:92:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:53:07,407 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T06:53:07,407 | ^~~~~~~~ 2021-07-14T06:53:08,127 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/alloy_types.cpp -o build/temp.linux-armv7l-3.9/PTM/alloy_types.o 2021-07-14T06:53:09,711 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/canonical.cpp -o build/temp.linux-armv7l-3.9/PTM/canonical.o 2021-07-14T06:53:11,541 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/convex_hull_incremental.cpp -o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o 2021-07-14T06:53:13,526 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/deformation_gradient.cpp -o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o 2021-07-14T06:53:15,074 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/graph_data.cpp -o build/temp.linux-armv7l-3.9/PTM/graph_data.o 2021-07-14T06:53:16,691 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/index_ptm.cpp -o build/temp.linux-armv7l-3.9/PTM/index_ptm.o 2021-07-14T06:53:18,758 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/initialize_data.cpp -o build/temp.linux-armv7l-3.9/PTM/initialize_data.o 2021-07-14T06:53:20,450 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/neighbour_ordering.cpp -o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o 2021-07-14T06:53:21,855 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/normalize_vertices.cpp -o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o 2021-07-14T06:53:22,167 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/polar.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o 2021-07-14T06:53:23,049 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/quat.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o 2021-07-14T06:53:23,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/voronoi/cell.cpp -o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o 2021-07-14T06:53:27,004 In file included from /usr/include/c++/10/vector:72, 2021-07-14T06:53:27,005 from PTM/voronoi/cell.hpp:15, 2021-07-14T06:53:27,005 from PTM/voronoi/cell.cpp:16: 2021-07-14T06:53:27,005 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T06:53:27,005 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T06:53:27,005 426 | vector<_Tp, _Alloc>:: 2021-07-14T06:53:27,005 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:53:27,066 /usr/include/c++/10/bits/vector.tcc: In member function ‘void voro::voronoicell_base::face_areas(std::vector&)’: 2021-07-14T06:53:27,066 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:53:27,067 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T06:53:27,067 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:53:27,323 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT.o 2021-07-14T06:53:29,202 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::SetAtoms(PyObject*, AsapNS::Atoms*)’: 2021-07-14T06:53:29,202 Potentials/EMT.cpp:193:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:29,202 193 | for (int i = 0; i < parameters.size(); i++) 2021-07-14T06:53:29,202 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:53:29,217 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::Allocate()’: 2021-07-14T06:53:29,217 Potentials/EMT.cpp:242:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:29,217 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T06:53:29,217 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-14T06:53:29,217 Potentials/EMT.cpp:242:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:29,218 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T06:53:29,218 | ~~~~~~~^~~~~~~~~~~~~ 2021-07-14T06:53:29,218 Potentials/EMT.cpp:251:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:29,218 251 | if (force.capacity() < nSize) 2021-07-14T06:53:29,218 | ~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T06:53:29,218 Potentials/EMT.cpp:262:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:29,218 262 | if (Eas.capacity() < nAtoms) 2021-07-14T06:53:29,219 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:53:29,220 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::AllocateStress()’: 2021-07-14T06:53:29,220 Potentials/EMT.cpp:302:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:29,220 302 | if (ghostatoms && (virials.capacity() < nSize)) 2021-07-14T06:53:29,220 | ~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T06:53:29,223 In file included from Basics/AsapPython.h:44, 2021-07-14T06:53:29,223 from Potentials/EMT.h:34, 2021-07-14T06:53:29,223 from Potentials/EMT.cpp:34: 2021-07-14T06:53:29,223 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::InitParameters()’: 2021-07-14T06:53:29,224 Potentials/EMT.cpp:324:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:29,224 324 | ASSERT(nelements == elements_set.size()); 2021-07-14T06:53:29,224 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:53:29,224 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:29,224 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:29,224 | ^~ 2021-07-14T06:53:29,240 Potentials/EMT.cpp: In member function ‘virtual const std::vector& AsapNS::EMT::GetPotentialEnergies(PyObject*)’: 2021-07-14T06:53:29,241 Potentials/EMT.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:29,241 538 | ASSERT(Epot.size() == nAtoms); 2021-07-14T06:53:29,241 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T06:53:29,241 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:29,241 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:29,241 | ^~ 2021-07-14T06:53:29,277 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T06:53:29,277 Potentials/EMT.cpp:1259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:29,277 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T06:53:29,277 | ~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T06:53:29,278 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:29,278 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:29,278 | ^~ 2021-07-14T06:53:29,278 Potentials/EMT.cpp:1259:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:29,278 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T06:53:29,278 | ~~~~~~~^~~~~~~~~~~~ 2021-07-14T06:53:29,278 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:29,278 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:29,279 | ^~ 2021-07-14T06:53:29,279 Potentials/EMT.cpp:1260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:29,279 1260 | nSize == dEds.size()); 2021-07-14T06:53:29,279 | ~~~~~~^~~~~~~~~~~~~~ 2021-07-14T06:53:29,279 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:29,279 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:29,280 | ^~ 2021-07-14T06:53:29,290 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergies()’: 2021-07-14T06:53:29,290 Potentials/EMT.cpp:1425:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:29,290 1425 | ASSERT(virials.size() == nSize); 2021-07-14T06:53:29,290 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:53:29,290 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:29,290 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:29,291 | ^~ 2021-07-14T06:53:29,299 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergiesSingle()’: 2021-07-14T06:53:29,299 Potentials/EMT.cpp:1544:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:29,299 1544 | ASSERT(this->force.size() >= nSize); 2021-07-14T06:53:29,300 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:53:29,300 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:29,300 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:29,300 | ^~ 2021-07-14T06:53:29,300 Potentials/EMT.cpp:1547:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:29,300 1547 | ASSERT(virials.size() == nSize); 2021-07-14T06:53:29,300 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:53:29,301 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:29,301 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:29,301 | ^~ 2021-07-14T06:53:35,932 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT2013.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o 2021-07-14T06:53:37,784 In file included from Basics/AsapPython.h:44, 2021-07-14T06:53:37,784 from Potentials/EMT.h:34, 2021-07-14T06:53:37,784 from Potentials/EMT2013.h:13, 2021-07-14T06:53:37,784 from Potentials/EMT2013.cpp:8: 2021-07-14T06:53:37,785 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::InitParameters()’: 2021-07-14T06:53:37,785 Potentials/EMT2013.cpp:105:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:37,785 105 | ASSERT(nelements == elements_set.size()); 2021-07-14T06:53:37,785 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:53:37,785 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:37,785 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:37,785 | ^~ 2021-07-14T06:53:37,821 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T06:53:37,822 Potentials/EMT2013.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:37,822 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T06:53:37,822 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:53:37,822 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:37,822 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:37,822 | ^~ 2021-07-14T06:53:37,822 Potentials/EMT2013.cpp:568:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:37,823 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T06:53:37,823 | ~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T06:53:37,823 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:37,823 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:37,823 | ^~ 2021-07-14T06:53:37,823 Potentials/EMT2013.cpp:569:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:37,823 569 | nSize == this->dEds.size()); 2021-07-14T06:53:37,824 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:53:37,824 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:37,824 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:37,824 | ^~ 2021-07-14T06:53:40,554 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o 2021-07-14T06:53:42,980 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o 2021-07-14T06:53:45,175 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o 2021-07-14T06:53:47,095 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/LennardJones.cpp -o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o 2021-07-14T06:53:48,924 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetVirials(PyObject*)’: 2021-07-14T06:53:48,924 Potentials/LennardJones.cpp:374:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:53:48,924 374 | if (nAtoms != virials.size()) 2021-07-14T06:53:48,925 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T06:53:48,931 In file included from Basics/AsapPython.h:44, 2021-07-14T06:53:48,931 from Potentials/LennardJones.cpp:43: 2021-07-14T06:53:48,932 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetForces(PyObject*)’: 2021-07-14T06:53:48,932 Potentials/LennardJones.cpp:484:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:48,932 484 | ASSERT(forces.size() == nSize); 2021-07-14T06:53:48,932 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:53:48,932 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:48,932 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:48,932 | ^~ 2021-07-14T06:53:48,937 Potentials/LennardJones.cpp: In member function ‘double AsapNS::LennardJones::CalculateEnergyAndEnergies()’: 2021-07-14T06:53:48,937 Potentials/LennardJones.cpp:580:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:48,937 580 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T06:53:48,937 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T06:53:48,937 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:48,938 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:48,938 | ^~ 2021-07-14T06:53:51,656 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o 2021-07-14T06:53:53,472 In file included from Basics/AsapPython.h:44, 2021-07-14T06:53:53,472 from Potentials/MetalOxideInterface.cpp:29: 2021-07-14T06:53:53,472 Potentials/MetalOxideInterface.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface::GetForces(PyObject*)’: 2021-07-14T06:53:53,473 Potentials/MetalOxideInterface.cpp:316:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:53,473 316 | ASSERT(forces.size() == nSize); 2021-07-14T06:53:53,473 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:53:53,473 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:53,473 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:53,473 | ^~ 2021-07-14T06:53:53,489 Potentials/MetalOxideInterface.cpp: In member function ‘double AsapNS::MetalOxideInterface::CalculateEnergyAndEnergies()’: 2021-07-14T06:53:53,490 Potentials/MetalOxideInterface.cpp:571:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:53,490 571 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T06:53:53,490 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T06:53:53,490 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:53,490 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:53,490 | ^~ 2021-07-14T06:53:57,045 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface2.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o 2021-07-14T06:53:58,857 In file included from Basics/AsapPython.h:44, 2021-07-14T06:53:58,857 from Potentials/MetalOxideInterface2.cpp:43: 2021-07-14T06:53:58,858 Potentials/MetalOxideInterface2.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface2::GetForces(PyObject*)’: 2021-07-14T06:53:58,858 Potentials/MetalOxideInterface2.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:58,858 330 | ASSERT(forces.size() == nSize); 2021-07-14T06:53:58,858 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:53:58,858 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:58,858 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:58,858 | ^~ 2021-07-14T06:53:58,873 Potentials/MetalOxideInterface2.cpp: In member function ‘double AsapNS::MetalOxideInterface2::CalculateEnergyAndEnergies()’: 2021-07-14T06:53:58,873 Potentials/MetalOxideInterface2.cpp:552:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:53:58,873 552 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T06:53:58,874 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T06:53:58,874 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:53:58,874 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:53:58,874 | ^~ 2021-07-14T06:54:02,660 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MonteCarloEMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o 2021-07-14T06:54:06,513 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Morse.cpp -o build/temp.linux-armv7l-3.9/Potentials/Morse.o 2021-07-14T06:54:08,354 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:08,354 from Potentials/Morse.cpp:43: 2021-07-14T06:54:08,354 Potentials/Morse.cpp: In member function ‘double AsapNS::Morse::CalculateEnergyAndEnergies()’: 2021-07-14T06:54:08,354 Potentials/Morse.cpp:472:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:08,355 472 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T06:54:08,355 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T06:54:08,355 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:08,355 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:08,355 | ^~ 2021-07-14T06:54:10,389 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T06:54:10,389 from Potentials/Morse.cpp:54: 2021-07-14T06:54:10,389 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T06:54:10,389 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,389 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-14T06:54:10,390 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,390 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,390 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,390 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,411 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-14T06:54:10,411 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,411 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-14T06:54:10,412 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,427 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T06:54:10,427 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,428 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-14T06:54:10,428 | ^~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,428 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,457 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-14T06:54:10,457 from /usr/include/c++/10/algorithm:62, 2021-07-14T06:54:10,457 from Potentials/Morse.cpp:54: 2021-07-14T06:54:10,457 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T06:54:10,457 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,457 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-14T06:54:10,457 | ^~~~~~~~~~~~~ 2021-07-14T06:54:10,497 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T06:54:10,497 from Potentials/Morse.cpp:54: 2021-07-14T06:54:10,497 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T06:54:10,498 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,498 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-14T06:54:10,498 | ^~~~~~~~~~~~~ 2021-07-14T06:54:10,498 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,498 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,498 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,531 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T06:54:10,532 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,532 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-14T06:54:10,532 | ^~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,532 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,532 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,533 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,533 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-14T06:54:10,533 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,533 1925 | __comp); 2021-07-14T06:54:10,533 | ~~~~~~~ 2021-07-14T06:54:10,533 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,533 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,533 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-14T06:54:10,534 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,534 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,534 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-14T06:54:10,534 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,572 /usr/include/c++/10/bits/stl_algo.h: In member function ‘double AsapNS::Morse::Add(std::vector&)’: 2021-07-14T06:54:10,572 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,572 1974 | std::__introsort_loop(__first, __last, 2021-07-14T06:54:10,573 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,573 1975 | std::__lg(__last - __first) * 2, 2021-07-14T06:54:10,573 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,573 1976 | __comp); 2021-07-14T06:54:10,573 | ~~~~~~~ 2021-07-14T06:54:10,573 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,573 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-14T06:54:10,573 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,574 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T06:54:10,574 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-14T06:54:10,574 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:10,975 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Potential.cpp -o build/temp.linux-armv7l-3.9/Potentials/Potential.o 2021-07-14T06:54:12,483 Potentials/Potential.cpp: In member function ‘virtual AsapNS::SymTensor AsapNS::Potential::GetVirial(PyObject*)’: 2021-07-14T06:54:12,483 Potentials/Potential.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:12,483 52 | for (int i = 0; i < virials.size(); i++) 2021-07-14T06:54:12,483 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T06:54:12,901 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RGL.cpp -o build/temp.linux-armv7l-3.9/Potentials/RGL.o 2021-07-14T06:54:14,728 Potentials/RGL.cpp: In member function ‘void AsapNS::RGL::Allocate()’: 2021-07-14T06:54:14,729 Potentials/RGL.cpp:127:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:14,729 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T06:54:14,729 | ~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T06:54:14,729 Potentials/RGL.cpp:127:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:14,730 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T06:54:14,730 | ~~~~~~~^~~~~~~~~~~~~~ 2021-07-14T06:54:17,492 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o 2021-07-14T06:54:19,314 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:19,314 from Potentials/RahmanStillingerLemberg.cpp:43: 2021-07-14T06:54:19,314 Potentials/RahmanStillingerLemberg.cpp: In member function ‘virtual const std::vector& AsapNS::RahmanStillingerLemberg::GetForces(PyObject*)’: 2021-07-14T06:54:19,314 Potentials/RahmanStillingerLemberg.cpp:355:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:19,315 355 | ASSERT(forces.size() == nSize); 2021-07-14T06:54:19,315 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T06:54:19,315 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:19,315 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:19,315 | ^~ 2021-07-14T06:54:19,322 Potentials/RahmanStillingerLemberg.cpp: In member function ‘double AsapNS::RahmanStillingerLemberg::CalculateEnergyAndEnergies()’: 2021-07-14T06:54:19,323 Potentials/RahmanStillingerLemberg.cpp:452:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:19,323 452 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T06:54:19,323 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T06:54:19,323 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:19,323 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:19,323 | ^~ 2021-07-14T06:54:22,222 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CNA.cpp -o build/temp.linux-armv7l-3.9/Tools/CNA.o 2021-07-14T06:54:23,896 Tools/CNA.cpp: In function ‘void AsapNS::CNA(PyObject*, double, std::vector&)’: 2021-07-14T06:54:23,896 Tools/CNA.cpp:54:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T06:54:23,896 54 | for (unsigned int a2 = 0; a2 < nTotal; a2++) 2021-07-14T06:54:23,897 | ~~~^~~~~~~~ 2021-07-14T06:54:23,902 Tools/CNA.cpp:62:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:54:23,902 62 | if (a1 < a2) 2021-07-14T06:54:23,903 | ~~~^~~~ 2021-07-14T06:54:23,903 Tools/CNA.cpp:82:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T06:54:23,904 82 | for (unsigned int j1 = 0; j1 < j2; j1++) 2021-07-14T06:54:23,904 | ~~~^~~~ 2021-07-14T06:54:24,956 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CoordinationNumbers.cpp -o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o 2021-07-14T06:54:27,198 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/FullCNA.cpp -o build/temp.linux-armv7l-3.9/Tools/FullCNA.o 2021-07-14T06:54:31,731 In file included from /usr/include/c++/10/map:60, 2021-07-14T06:54:31,732 from Tools/FullCNA.h:35, 2021-07-14T06:54:31,732 from Tools/FullCNA.cpp:24: 2021-07-14T06:54:31,732 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T06:54:31,732 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T06:54:31,732 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T06:54:31,732 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:32,119 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T06:54:32,119 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T06:54:32,119 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T06:54:32,119 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:32,164 In file included from /usr/include/c++/10/map:61, 2021-07-14T06:54:32,165 from Tools/FullCNA.h:35, 2021-07-14T06:54:32,165 from Tools/FullCNA.cpp:24: 2021-07-14T06:54:32,165 /usr/include/c++/10/bits/stl_map.h: In member function ‘void AsapNS::FullCNA::SetMultipleCutoffs(std::map, double>&)’: 2021-07-14T06:54:32,165 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T06:54:32,165 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T06:54:32,165 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:32,166 502 | std::tuple(__k), 2021-07-14T06:54:32,166 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:32,166 503 | std::tuple<>()); 2021-07-14T06:54:32,166 | ~~~~~~~~~~~~~~~ 2021-07-14T06:54:32,166 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T06:54:32,166 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T06:54:32,166 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:32,166 502 | std::tuple(__k), 2021-07-14T06:54:32,167 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:32,167 503 | std::tuple<>()); 2021-07-14T06:54:32,167 | ~~~~~~~~~~~~~~~ 2021-07-14T06:54:33,073 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/GetNeighborList.cpp -o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o 2021-07-14T06:54:35,340 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/RawRadialDistribution.cpp -o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o 2021-07-14T06:54:37,000 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:37,000 from Tools/RawRadialDistribution.cpp:29: 2021-07-14T06:54:37,001 Tools/RawRadialDistribution.cpp: In function ‘void AsapNS::RawRadialDistribution(PyObject*, int, const int*, double, int, AsapNS::RDFtype&, AsapNS::RDFcountType&, long int*)’: 2021-07-14T06:54:37,001 Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integer expressions of different signedness: ‘std::vector, long int*> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:37,001 55 | ASSERT(result.size() == nGroups); 2021-07-14T06:54:37,001 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T06:54:37,001 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:37,001 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:37,001 | ^~ 2021-07-14T06:54:37,010 Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:37,010 56 | ASSERT(counts.size() == nGroups); 2021-07-14T06:54:37,010 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T06:54:37,010 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:37,010 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:37,011 | ^~ 2021-07-14T06:54:38,617 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o 2021-07-14T06:54:41,148 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c VersionInfo_autogen/version_piwheels33_s.cpp -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels33_s.o 2021-07-14T06:54:41,366 VersionInfo_autogen/version_piwheels33_s.cpp:15:61: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2021-07-14T06:54:41,366 15 | return ("ASAP version 3.11.5 serial, compiled " __DATE__ " " __TIME__ " on piwheels33 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T06:54:41,366 | ^~~~~~~~ 2021-07-14T06:54:41,366 VersionInfo_autogen/version_piwheels33_s.cpp:15:74: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2021-07-14T06:54:41,366 15 | return ("ASAP version 3.11.5 serial, compiled " __DATE__ " " __TIME__ " on piwheels33 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T06:54:41,367 | ^~~~~~~~ 2021-07-14T06:54:41,988 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels33_s.o -lm -o build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so 2021-07-14T06:54:43,387 *** Building the asap-python executable *** 2021-07-14T06:54:43,389 *** COMPILING: ['ParallelInterface/mpi.c'] 2021-07-14T06:54:43,389 mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o -c ParallelInterface/mpi.c 2021-07-14T06:54:45,091 *** COMPILING: ['Parallel/ParallelAtoms.cpp', 'Parallel/ParallelPotential.cpp', 'Parallel/RegularGridDecomposition.cpp', 'ParallelInterface/AsapParallel.cpp', 'ParallelInterface/ParallelAtomsInterface.cpp', 'ParallelInterface/ParallelNeighborListInterface.cpp', 'ParallelInterface/ParallelPotentialInterface.cpp', 'VersionInfo_autogen/version_piwheels33_p.cpp'] 2021-07-14T06:54:45,091 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o -c Parallel/ParallelAtoms.cpp 2021-07-14T06:54:47,036 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:47,036 from Parallel/ParallelAtoms.h:28, 2021-07-14T06:54:47,036 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T06:54:47,036 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T06:54:47,036 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:47,036 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T06:54:47,036 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,037 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:47,037 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:47,037 | ^~ 2021-07-14T06:54:47,038 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T06:54:47,038 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:47,038 301 | ASSERT(sendbuf.size() == size); 2021-07-14T06:54:47,039 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T06:54:47,039 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:47,039 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:47,039 | ^~ 2021-07-14T06:54:47,084 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::Migrate(bool)’: 2021-07-14T06:54:47,084 Parallel/ParallelAtoms.cpp:241:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:47,084 241 | (sendlist->size() < nProcessors)); 2021-07-14T06:54:47,084 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2021-07-14T06:54:47,085 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:47,085 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:47,085 | ^~ 2021-07-14T06:54:47,120 Parallel/ParallelAtoms.cpp:318:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,120 318 | for (int j = 0; j < arrays.size(); j++) 2021-07-14T06:54:47,120 | ~~^~~~~~~~~~~~~~~ 2021-07-14T06:54:47,121 Parallel/ParallelAtoms.cpp:338:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,121 338 | for (int j = 0; j < new_arrays.size(); j++) 2021-07-14T06:54:47,121 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,121 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:47,121 from Parallel/ParallelAtoms.h:28, 2021-07-14T06:54:47,122 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T06:54:47,122 Parallel/ParallelAtoms.cpp:345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,122 345 | ASSERT(b - b0 == receiveBuffer.size()); 2021-07-14T06:54:47,122 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,122 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:47,122 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:47,122 | ^~ 2021-07-14T06:54:47,168 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::UpdateGhostData()’: 2021-07-14T06:54:47,169 Parallel/ParallelAtoms.cpp:609:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,169 609 | for (int i = 0; i < array_names.size(); i++) 2021-07-14T06:54:47,169 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,170 Parallel/ParallelAtoms.cpp:630:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,171 630 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T06:54:47,171 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,171 Parallel/ParallelAtoms.cpp:637:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,171 637 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T06:54:47,171 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,178 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:47,179 from Parallel/ParallelAtoms.h:28, 2021-07-14T06:54:47,179 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T06:54:47,179 Parallel/ParallelAtoms.cpp:649:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,179 649 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); 2021-07-14T06:54:47,179 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,179 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:47,180 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:47,180 | ^~ 2021-07-14T06:54:47,180 Parallel/ParallelAtoms.cpp:659:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,180 659 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T06:54:47,180 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,185 Parallel/ParallelAtoms.cpp: In member function ‘virtual void AsapNS::ParallelAtoms::CommunicateData(double*, int)’: 2021-07-14T06:54:47,186 Parallel/ParallelAtoms.cpp:717:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,186 717 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T06:54:47,186 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,219 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:47,219 from Parallel/ParallelAtoms.h:28, 2021-07-14T06:54:47,219 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T06:54:47,219 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T06:54:47,220 Parallel/ParallelAtoms.cpp:1105:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:47,220 1105 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T06:54:47,220 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,220 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:47,220 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:47,220 | ^~ 2021-07-14T06:54:47,221 Parallel/ParallelAtoms.cpp:1111:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,221 1111 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T06:54:47,221 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,232 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:47,232 from Parallel/ParallelAtoms.h:28, 2021-07-14T06:54:47,232 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T06:54:47,232 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T06:54:47,232 Parallel/ParallelAtoms.cpp:1138:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:47,233 1138 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T06:54:47,233 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:47,233 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:47,233 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:47,233 | ^~ 2021-07-14T06:54:47,233 Parallel/ParallelAtoms.cpp:1144:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T06:54:47,233 1144 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T06:54:47,234 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:52,410 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o -c Parallel/ParallelPotential.cpp 2021-07-14T06:54:54,256 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:54,256 from Parallel/ParallelPotential.h:28, 2021-07-14T06:54:54,256 from Parallel/ParallelPotential.cpp:24: 2021-07-14T06:54:54,256 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T06:54:54,256 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:54,256 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T06:54:54,256 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:54,257 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:54,257 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:54,257 | ^~ 2021-07-14T06:54:54,258 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T06:54:54,258 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:54,258 301 | ASSERT(sendbuf.size() == size); 2021-07-14T06:54:54,258 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T06:54:54,259 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:54,259 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:54,259 | ^~ 2021-07-14T06:54:56,020 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o -c Parallel/RegularGridDecomposition.cpp 2021-07-14T06:54:57,874 In file included from Basics/AsapPython.h:44, 2021-07-14T06:54:57,874 from Parallel/RegularGridDecomposition.cpp:24: 2021-07-14T06:54:57,874 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T06:54:57,874 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:57,875 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T06:54:57,875 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T06:54:57,875 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:57,875 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:57,875 | ^~ 2021-07-14T06:54:57,877 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T06:54:57,877 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T06:54:57,877 301 | ASSERT(sendbuf.size() == size); 2021-07-14T06:54:57,877 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T06:54:57,878 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:54:57,878 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:54:57,878 | ^~ 2021-07-14T06:55:00,569 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o -c ParallelInterface/AsapParallel.cpp 2021-07-14T06:55:02,828 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o -c ParallelInterface/ParallelAtomsInterface.cpp 2021-07-14T06:55:04,674 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o -c ParallelInterface/ParallelNeighborListInterface.cpp 2021-07-14T06:55:06,101 In file included from Basics/AsapPython.h:44, 2021-07-14T06:55:06,101 from ParallelInterface/ParallelNeighborListInterface.cpp:2: 2021-07-14T06:55:06,101 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T06:55:06,102 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:55:06,102 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T06:55:06,102 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:55:06,102 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:55:06,102 | ^~ 2021-07-14T06:55:06,111 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T06:55:06,112 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:55:06,112 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T06:55:06,112 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:55:06,112 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:55:06,112 | ^~ 2021-07-14T06:55:06,120 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T06:55:06,120 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:55:06,120 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T06:55:06,120 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:55:06,120 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:55:06,121 | ^~ 2021-07-14T06:55:06,131 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T06:55:06,131 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:55:06,132 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T06:55:06,132 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:55:06,132 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:55:06,132 | ^~ 2021-07-14T06:55:06,142 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T06:55:06,142 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T06:55:06,142 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T06:55:06,142 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T06:55:06,143 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T06:55:06,143 | ^~ 2021-07-14T06:55:06,337 ParallelInterface/ParallelNeighborListInterface.cpp: In function ‘PyObject* PyAsap_NewNeighborCellLocator_Parallel(PyObject*, PyObject*, PyObject*)’: 2021-07-14T06:55:06,337 ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:55:06,337 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T06:55:06,337 | ^~~~~~ 2021-07-14T06:55:06,337 ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:55:06,338 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T06:55:06,338 | ^~~~~~~ 2021-07-14T06:55:06,338 ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:55:06,338 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T06:55:06,338 | ^~~~~~~~~~~~~ 2021-07-14T06:55:06,713 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o -c ParallelInterface/ParallelPotentialInterface.cpp 2021-07-14T06:55:08,086 ParallelInterface/ParallelPotentialInterface.cpp: In function ‘int PyAsap_ParPotInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T06:55:08,086 ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T06:55:08,086 48 | static char *kwlist[] = {"potential", NULL}; 2021-07-14T06:55:08,086 | ^~~~~~~~~~~ 2021-07-14T06:55:08,478 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels33_p.o -c VersionInfo_autogen/version_piwheels33_p.cpp 2021-07-14T06:55:09,303 mpicxx -o build/bin.linux-armv7l-3.9/asap-python build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels33_p.o -L/usr/lib/python3.9/config-3.9-arm-linux-gnueabihf -lm -lpython3.9 -lm -lpython3.9 -lcrypt -lpthread -ldl -lutil -lm -lm -Wl,-z,relro -g -fwrapv -O2 -lexpat -L/usr/lib -lz -lexpat -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-14T06:55:11,261 running build_scripts 2021-07-14T06:55:11,262 Protecting build/bin.linux-armv7l-3.9/asap-python from ajustment 2021-07-14T06:55:11,262 creating build/scripts-3.9 2021-07-14T06:55:11,264 copying and adjusting scripts/asap-qsub -> build/scripts-3.9 2021-07-14T06:55:11,266 copying and adjusting scripts/asap-sbatch -> build/scripts-3.9 2021-07-14T06:55:11,268 changing mode of build/scripts-3.9/asap-qsub from 644 to 755 2021-07-14T06:55:11,269 changing mode of build/scripts-3.9/asap-sbatch from 644 to 755 2021-07-14T06:55:11,270 copying build/bin.linux-armv7l-3.9/asap-python -> build/scripts-3.9 2021-07-14T06:55:11,509 installing to build/bdist.linux-armv7l/wheel 2021-07-14T06:55:11,510 running install 2021-07-14T06:55:11,511 running install_lib 2021-07-14T06:55:11,515 creating build/bdist.linux-armv7l 2021-07-14T06:55:11,516 creating build/bdist.linux-armv7l/wheel 2021-07-14T06:55:11,517 copying build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-14T06:55:11,732 creating build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:11,734 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T06:55:11,735 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T06:55:11,737 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Basin.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T06:55:11,739 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T06:55:11,740 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T06:55:11,743 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Surface.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T06:55:11,747 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T06:55:11,748 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T06:55:11,751 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T06:55:11,753 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T06:55:11,756 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T06:55:11,758 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Metropolis.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T06:55:11,760 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Start.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T06:55:11,762 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T06:55:11,765 creating build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,766 copying build/lib.linux-armv7l-3.9/asap3/md/md.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,768 copying build/lib.linux-armv7l-3.9/asap3/md/nvtberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,770 copying build/lib.linux-armv7l-3.9/asap3/md/langevin.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,772 copying build/lib.linux-armv7l-3.9/asap3/md/nptberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,774 copying build/lib.linux-armv7l-3.9/asap3/md/velocitydistribution.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,776 copying build/lib.linux-armv7l-3.9/asap3/md/verlet_fast.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,778 copying build/lib.linux-armv7l-3.9/asap3/md/npt.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,780 copying build/lib.linux-armv7l-3.9/asap3/md/verlet.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,782 copying build/lib.linux-armv7l-3.9/asap3/md/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T06:55:11,784 creating build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T06:55:11,785 copying build/lib.linux-armv7l-3.9/asap3/setup/VelocityDistribution.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T06:55:11,788 creating build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,789 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/plane_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,791 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/energy.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,793 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/quat_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,795 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/grain_structures.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,798 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,800 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/helpers.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,802 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,805 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/dislocated.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,807 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T06:55:11,809 copying build/lib.linux-armv7l-3.9/asap3/setup/dislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T06:55:11,812 copying build/lib.linux-armv7l-3.9/asap3/setup/displacementfield.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T06:55:11,814 copying build/lib.linux-armv7l-3.9/asap3/setup/multidislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T06:55:11,816 copying build/lib.linux-armv7l-3.9/asap3/setup/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T06:55:11,818 copying build/lib.linux-armv7l-3.9/asap3/testtools.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:11,821 creating build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,822 copying build/lib.linux-armv7l-3.9/asap3/Internal/EMTParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,825 copying build/lib.linux-armv7l-3.9/asap3/Internal/ListOfElements.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,827 copying build/lib.linux-armv7l-3.9/asap3/Internal/Threads.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,829 copying build/lib.linux-armv7l-3.9/asap3/Internal/checkversion.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,831 copying build/lib.linux-armv7l-3.9/asap3/Internal/Builtins.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,833 copying build/lib.linux-armv7l-3.9/asap3/Internal/BuiltinPotentials.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,836 copying build/lib.linux-armv7l-3.9/asap3/Internal/Subject.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,838 copying build/lib.linux-armv7l-3.9/asap3/Internal/MonteCarloAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,841 creating build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T06:55:11,842 copying build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T06:55:11,844 copying build/lib.linux-armv7l-3.9/asap3/Internal/OpenKIMcalculator.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,847 copying build/lib.linux-armv7l-3.9/asap3/Internal/CheckArray.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,849 copying build/lib.linux-armv7l-3.9/asap3/Internal/ParallelListOfAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,852 copying build/lib.linux-armv7l-3.9/asap3/Internal/Collector.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,855 copying build/lib.linux-armv7l-3.9/asap3/Internal/UtilityFunctions.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,857 copying build/lib.linux-armv7l-3.9/asap3/Internal/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T06:55:11,859 copying build/lib.linux-armv7l-3.9/asap3/EMT2013Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:11,862 creating build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T06:55:11,863 copying build/lib.linux-armv7l-3.9/asap3/optimize/mdmin.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T06:55:11,865 copying build/lib.linux-armv7l-3.9/asap3/optimize/fire.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T06:55:11,867 copying build/lib.linux-armv7l-3.9/asap3/optimize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T06:55:11,869 copying build/lib.linux-armv7l-3.9/asap3/optimize/optimize.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T06:55:11,872 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,873 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/Logger.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,875 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/resizecluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,879 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/mc_result.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,882 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T06:55:11,882 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/surface.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T06:55:11,886 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T06:55:11,888 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/atom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T06:55:11,891 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/cluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,894 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/atommontecarlodata.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,897 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/clusteratom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,900 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T06:55:11,901 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T06:55:11,904 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T06:55:11,906 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/au.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T06:55:11,908 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T06:55:11,910 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,912 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/langmuirExpression.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,914 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/AdsCalc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T06:55:11,917 creating build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,918 copying build/lib.linux-armv7l-3.9/asap3/analysis/findcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,920 copying build/lib.linux-armv7l-3.9/asap3/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,923 copying build/lib.linux-armv7l-3.9/asap3/analysis/clusterposition.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,925 copying build/lib.linux-armv7l-3.9/asap3/analysis/particle.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,927 copying build/lib.linux-armv7l-3.9/asap3/analysis/localstructure.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,930 copying build/lib.linux-armv7l-3.9/asap3/analysis/cutcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,932 copying build/lib.linux-armv7l-3.9/asap3/analysis/ptm.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,935 copying build/lib.linux-armv7l-3.9/asap3/analysis/averagepositions.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,937 copying build/lib.linux-armv7l-3.9/asap3/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T06:55:11,940 copying build/lib.linux-armv7l-3.9/asap3/version.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:11,942 copying build/lib.linux-armv7l-3.9/asap3/fixepydoc.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:11,944 copying build/lib.linux-armv7l-3.9/asap3/GuptaParameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:11,946 copying build/lib.linux-armv7l-3.9/asap3/mpi.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:11,948 copying build/lib.linux-armv7l-3.9/asap3/timing.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:11,951 creating build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:11,952 copying build/lib.linux-armv7l-3.9/asap3/Tools/AtomicEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:11,955 copying build/lib.linux-armv7l-3.9/asap3/Tools/SurfaceEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:11,957 copying build/lib.linux-armv7l-3.9/asap3/Tools/Timing.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:11,960 copying build/lib.linux-armv7l-3.9/asap3/Tools/MaterialProperties.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:11,963 copying build/lib.linux-armv7l-3.9/asap3/Tools/OptimizationDatabase.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:11,965 copying build/lib.linux-armv7l-3.9/asap3/Tools/niflheim.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:11,967 copying build/lib.linux-armv7l-3.9/asap3/Tools/ElasticConstants.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:11,970 creating build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,971 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/EMT.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,974 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,977 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Search.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,979 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Performance.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,981 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Quantities.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,985 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Optimization.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,988 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,992 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/RGL.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,994 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/GetParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,996 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Sampling.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:11,998 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T06:55:12,000 copying build/lib.linux-armv7l-3.9/asap3/Tools/EMT_two_atom_test.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:12,002 copying build/lib.linux-armv7l-3.9/asap3/Tools/AsapFileToTrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:12,004 copying build/lib.linux-armv7l-3.9/asap3/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T06:55:12,006 copying build/lib.linux-armv7l-3.9/asap3/memory.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:12,008 copying build/lib.linux-armv7l-3.9/asap3/EMT2011Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:12,011 creating build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T06:55:12,012 copying build/lib.linux-armv7l-3.9/asap3/io/ReadOldFiles.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T06:55:12,014 copying build/lib.linux-armv7l-3.9/asap3/io/trajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T06:55:12,017 copying build/lib.linux-armv7l-3.9/asap3/io/cpu_setup.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T06:55:12,019 copying build/lib.linux-armv7l-3.9/asap3/io/bundletrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T06:55:12,022 copying build/lib.linux-armv7l-3.9/asap3/io/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T06:55:12,024 copying build/lib.linux-armv7l-3.9/asap3/constraints.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:12,026 copying build/lib.linux-armv7l-3.9/asap3/__init__.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:12,029 copying build/lib.linux-armv7l-3.9/asap3/EMT2011_py.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T06:55:12,032 running install_egg_info 2021-07-14T06:55:12,061 running egg_info 2021-07-14T06:55:12,061 creating asap3.egg-info 2021-07-14T06:55:12,062 writing asap3.egg-info/PKG-INFO 2021-07-14T06:55:12,065 writing dependency_links to asap3.egg-info/dependency_links.txt 2021-07-14T06:55:12,067 writing top-level names to asap3.egg-info/top_level.txt 2021-07-14T06:55:12,068 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T06:55:12,114 reading manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T06:55:12,116 reading manifest template 'MANIFEST.in' 2021-07-14T06:55:12,207 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T06:55:12,208 adding license file 'LICENSE' 2021-07-14T06:55:12,208 adding license file 'LICENSE.LESSER' 2021-07-14T06:55:12,231 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T06:55:12,233 Copying asap3.egg-info to build/bdist.linux-armv7l/wheel/asap3-3.11.5-py3.9.egg-info 2021-07-14T06:55:12,242 running install_scripts 2021-07-14T06:55:12,307 creating build/bdist.linux-armv7l/wheel/asap3-3.11.5.data 2021-07-14T06:55:12,307 creating build/bdist.linux-armv7l/wheel/asap3-3.11.5.data/scripts 2021-07-14T06:55:12,308 copying build/scripts-3.9/asap-sbatch -> build/bdist.linux-armv7l/wheel/asap3-3.11.5.data/scripts 2021-07-14T06:55:12,310 copying build/scripts-3.9/asap-qsub -> build/bdist.linux-armv7l/wheel/asap3-3.11.5.data/scripts 2021-07-14T06:55:12,312 copying build/scripts-3.9/asap-python -> build/bdist.linux-armv7l/wheel/asap3-3.11.5.data/scripts 2021-07-14T06:55:12,544 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.5.data/scripts/asap-sbatch to 755 2021-07-14T06:55:12,544 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.5.data/scripts/asap-qsub to 755 2021-07-14T06:55:12,544 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.5.data/scripts/asap-python to 755 2021-07-14T06:55:12,558 adding license file "LICENSE.LESSER" (matched pattern "LICEN[CS]E*") 2021-07-14T06:55:12,559 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-14T06:55:12,566 creating build/bdist.linux-armv7l/wheel/asap3-3.11.5.dist-info/WHEEL 2021-07-14T06:55:12,569 creating '/tmp/pip-wheel-w06zxr69/asap3-3.11.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T06:55:14,686 adding '_asap_p3.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T06:55:14,770 adding 'asap3/EMT2011Parameters.py' 2021-07-14T06:55:14,773 adding 'asap3/EMT2011_py.py' 2021-07-14T06:55:14,775 adding 'asap3/EMT2013Parameters.py' 2021-07-14T06:55:14,776 adding 'asap3/GuptaParameters.py' 2021-07-14T06:55:14,778 adding 'asap3/__init__.py' 2021-07-14T06:55:14,779 adding 'asap3/constraints.py' 2021-07-14T06:55:14,780 adding 'asap3/fixepydoc.py' 2021-07-14T06:55:14,782 adding 'asap3/memory.py' 2021-07-14T06:55:14,783 adding 'asap3/mpi.py' 2021-07-14T06:55:14,784 adding 'asap3/testtools.py' 2021-07-14T06:55:14,786 adding 'asap3/timing.py' 2021-07-14T06:55:14,787 adding 'asap3/version.py' 2021-07-14T06:55:14,790 adding 'asap3/Internal/BuiltinPotentials.py' 2021-07-14T06:55:14,792 adding 'asap3/Internal/Builtins.py' 2021-07-14T06:55:14,793 adding 'asap3/Internal/CheckArray.py' 2021-07-14T06:55:14,795 adding 'asap3/Internal/Collector.py' 2021-07-14T06:55:14,796 adding 'asap3/Internal/EMTParameters.py' 2021-07-14T06:55:14,797 adding 'asap3/Internal/ListOfElements.py' 2021-07-14T06:55:14,799 adding 'asap3/Internal/MonteCarloAtoms.py' 2021-07-14T06:55:14,801 adding 'asap3/Internal/OpenKIMcalculator.py' 2021-07-14T06:55:14,804 adding 'asap3/Internal/ParallelListOfAtoms.py' 2021-07-14T06:55:14,805 adding 'asap3/Internal/Subject.py' 2021-07-14T06:55:14,806 adding 'asap3/Internal/Threads.py' 2021-07-14T06:55:14,808 adding 'asap3/Internal/UtilityFunctions.py' 2021-07-14T06:55:14,809 adding 'asap3/Internal/__init__.py' 2021-07-14T06:55:14,810 adding 'asap3/Internal/checkversion.py' 2021-07-14T06:55:14,812 adding 'asap3/Internal/Compatibility/__init__.py' 2021-07-14T06:55:14,814 adding 'asap3/MonteCarlo/Base.py' 2021-07-14T06:55:14,815 adding 'asap3/MonteCarlo/Basin.py' 2021-07-14T06:55:14,816 adding 'asap3/MonteCarlo/Metropolis.py' 2021-07-14T06:55:14,817 adding 'asap3/MonteCarlo/Start.py' 2021-07-14T06:55:14,818 adding 'asap3/MonteCarlo/__init__.py' 2021-07-14T06:55:14,821 adding 'asap3/MonteCarlo/Moves/Base.py' 2021-07-14T06:55:14,823 adding 'asap3/MonteCarlo/Moves/Surface.py' 2021-07-14T06:55:14,824 adding 'asap3/MonteCarlo/Moves/__init__.py' 2021-07-14T06:55:14,826 adding 'asap3/MonteCarlo/Moves/Data/__init__.py' 2021-07-14T06:55:14,828 adding 'asap3/MonteCarlo/Moves/Data/fcc.py' 2021-07-14T06:55:14,829 adding 'asap3/MonteCarlo/Moves/Data/symmetry.py' 2021-07-14T06:55:14,832 adding 'asap3/Tools/AsapFileToTrajectory.py' 2021-07-14T06:55:14,833 adding 'asap3/Tools/AtomicEnergies.py' 2021-07-14T06:55:14,834 adding 'asap3/Tools/EMT_two_atom_test.py' 2021-07-14T06:55:14,836 adding 'asap3/Tools/ElasticConstants.py' 2021-07-14T06:55:14,838 adding 'asap3/Tools/MaterialProperties.py' 2021-07-14T06:55:14,840 adding 'asap3/Tools/OptimizationDatabase.py' 2021-07-14T06:55:14,841 adding 'asap3/Tools/SurfaceEnergies.py' 2021-07-14T06:55:14,843 adding 'asap3/Tools/Timing.py' 2021-07-14T06:55:14,844 adding 'asap3/Tools/__init__.py' 2021-07-14T06:55:14,845 adding 'asap3/Tools/niflheim.py' 2021-07-14T06:55:14,847 adding 'asap3/Tools/ParameterOptimization/EMT.py' 2021-07-14T06:55:14,849 adding 'asap3/Tools/ParameterOptimization/GetParameters.py' 2021-07-14T06:55:14,851 adding 'asap3/Tools/ParameterOptimization/Optimization.py' 2021-07-14T06:55:14,853 adding 'asap3/Tools/ParameterOptimization/Performance.py' 2021-07-14T06:55:14,856 adding 'asap3/Tools/ParameterOptimization/Quantities.py' 2021-07-14T06:55:14,858 adding 'asap3/Tools/ParameterOptimization/RGL.py' 2021-07-14T06:55:14,859 adding 'asap3/Tools/ParameterOptimization/Sampling.py' 2021-07-14T06:55:14,867 adding 'asap3/Tools/ParameterOptimization/ScipyFmin.py' 2021-07-14T06:55:14,869 adding 'asap3/Tools/ParameterOptimization/Search.py' 2021-07-14T06:55:14,871 adding 'asap3/Tools/ParameterOptimization/SearchParallel.py' 2021-07-14T06:55:14,872 adding 'asap3/Tools/ParameterOptimization/__init__.py' 2021-07-14T06:55:14,874 adding 'asap3/analysis/__init__.py' 2021-07-14T06:55:14,876 adding 'asap3/analysis/averagepositions.py' 2021-07-14T06:55:14,877 adding 'asap3/analysis/clusterposition.py' 2021-07-14T06:55:14,878 adding 'asap3/analysis/cutcluster.py' 2021-07-14T06:55:14,880 adding 'asap3/analysis/findcluster.py' 2021-07-14T06:55:14,882 adding 'asap3/analysis/localstructure.py' 2021-07-14T06:55:14,883 adding 'asap3/analysis/particle.py' 2021-07-14T06:55:14,886 adding 'asap3/analysis/ptm.py' 2021-07-14T06:55:14,888 adding 'asap3/analysis/rdf.py' 2021-07-14T06:55:14,890 adding 'asap3/io/ReadOldFiles.py' 2021-07-14T06:55:14,891 adding 'asap3/io/__init__.py' 2021-07-14T06:55:14,894 adding 'asap3/io/bundletrajectory.py' 2021-07-14T06:55:14,895 adding 'asap3/io/cpu_setup.py' 2021-07-14T06:55:14,897 adding 'asap3/io/trajectory.py' 2021-07-14T06:55:14,899 adding 'asap3/md/__init__.py' 2021-07-14T06:55:14,901 adding 'asap3/md/langevin.py' 2021-07-14T06:55:14,902 adding 'asap3/md/md.py' 2021-07-14T06:55:14,903 adding 'asap3/md/npt.py' 2021-07-14T06:55:14,904 adding 'asap3/md/nptberendsen.py' 2021-07-14T06:55:14,905 adding 'asap3/md/nvtberendsen.py' 2021-07-14T06:55:14,907 adding 'asap3/md/velocitydistribution.py' 2021-07-14T06:55:14,908 adding 'asap3/md/verlet.py' 2021-07-14T06:55:14,909 adding 'asap3/md/verlet_fast.py' 2021-07-14T06:55:14,911 adding 'asap3/nanoparticle_mc/AdsCalc.py' 2021-07-14T06:55:14,912 adding 'asap3/nanoparticle_mc/Logger.py' 2021-07-14T06:55:14,913 adding 'asap3/nanoparticle_mc/__init__.py' 2021-07-14T06:55:14,915 adding 'asap3/nanoparticle_mc/atommontecarlodata.py' 2021-07-14T06:55:14,918 adding 'asap3/nanoparticle_mc/cluster.py' 2021-07-14T06:55:14,920 adding 'asap3/nanoparticle_mc/clusteratom.py' 2021-07-14T06:55:14,921 adding 'asap3/nanoparticle_mc/langmuirExpression.py' 2021-07-14T06:55:14,922 adding 'asap3/nanoparticle_mc/mc_result.py' 2021-07-14T06:55:14,923 adding 'asap3/nanoparticle_mc/resizecluster.py' 2021-07-14T06:55:14,925 adding 'asap3/nanoparticle_mc/data/__init__.py' 2021-07-14T06:55:14,926 adding 'asap3/nanoparticle_mc/data/au.py' 2021-07-14T06:55:14,928 adding 'asap3/nanoparticle_mc/data/fcc.py' 2021-07-14T06:55:14,930 adding 'asap3/nanoparticle_mc/data/symmetry.py' 2021-07-14T06:55:14,931 adding 'asap3/nanoparticle_mc/montecarlo/__init__.py' 2021-07-14T06:55:14,936 adding 'asap3/nanoparticle_mc/montecarlo/atom.py' 2021-07-14T06:55:14,939 adding 'asap3/nanoparticle_mc/montecarlo/surface.py' 2021-07-14T06:55:14,941 adding 'asap3/optimize/__init__.py' 2021-07-14T06:55:14,942 adding 'asap3/optimize/fire.py' 2021-07-14T06:55:14,944 adding 'asap3/optimize/mdmin.py' 2021-07-14T06:55:14,945 adding 'asap3/optimize/optimize.py' 2021-07-14T06:55:14,946 adding 'asap3/setup/VelocityDistribution.py' 2021-07-14T06:55:14,947 adding 'asap3/setup/__init__.py' 2021-07-14T06:55:14,949 adding 'asap3/setup/dislocation.py' 2021-07-14T06:55:14,951 adding 'asap3/setup/displacementfield.py' 2021-07-14T06:55:14,953 adding 'asap3/setup/multidislocation.py' 2021-07-14T06:55:14,955 adding 'asap3/setup/nanocrystalline/__init__.py' 2021-07-14T06:55:14,956 adding 'asap3/setup/nanocrystalline/dislocated.py' 2021-07-14T06:55:14,957 adding 'asap3/setup/nanocrystalline/energy.py' 2021-07-14T06:55:14,959 adding 'asap3/setup/nanocrystalline/grain_structures.py' 2021-07-14T06:55:14,961 adding 'asap3/setup/nanocrystalline/helpers.py' 2021-07-14T06:55:14,962 adding 'asap3/setup/nanocrystalline/nanocrystalline.py' 2021-07-14T06:55:14,964 adding 'asap3/setup/nanocrystalline/nanocrystalline_orig.py' 2021-07-14T06:55:14,965 adding 'asap3/setup/nanocrystalline/plane_utils.py' 2021-07-14T06:55:14,967 adding 'asap3/setup/nanocrystalline/quat_utils.py' 2021-07-14T06:55:17,310 adding 'asap3-3.11.5.data/scripts/asap-python' 2021-07-14T06:55:17,404 adding 'asap3-3.11.5.data/scripts/asap-qsub' 2021-07-14T06:55:17,406 adding 'asap3-3.11.5.data/scripts/asap-sbatch' 2021-07-14T06:55:17,413 adding 'asap3-3.11.5.dist-info/LICENSE' 2021-07-14T06:55:17,415 adding 'asap3-3.11.5.dist-info/LICENSE.LESSER' 2021-07-14T06:55:17,416 adding 'asap3-3.11.5.dist-info/METADATA' 2021-07-14T06:55:17,417 adding 'asap3-3.11.5.dist-info/WHEEL' 2021-07-14T06:55:17,418 adding 'asap3-3.11.5.dist-info/top_level.txt' 2021-07-14T06:55:17,420 adding 'asap3-3.11.5.dist-info/RECORD' 2021-07-14T06:55:17,524 removing build/bdist.linux-armv7l/wheel 2021-07-14T06:55:17,690 Building wheel for asap3 (setup.py): finished with status 'done' 2021-07-14T06:55:17,807 Created wheel for asap3: filename=asap3-3.11.5-cp39-cp39-linux_armv7l.whl size=8481458 sha256=9d718297cca1cff3346f96e162d8a28d851931dc6f12902eac93610afc9cc1e6 2021-07-14T06:55:17,808 Stored in directory: /tmp/pip-ephem-wheel-cache-zu57ftwo/wheels/df/19/6a/b36b533ee67ad5c0b5c33e3e3483397e2edb1e58f98c1f3d98 2021-07-14T06:55:17,826 Successfully built asap3 2021-07-14T06:55:18,104 Removed build tracker: '/tmp/pip-req-tracker-9h83ccnu'