2021-07-14T07:04:54,042 Created temporary directory: /tmp/pip-ephem-wheel-cache-23lqdm_u
2021-07-14T07:04:54,045 Created temporary directory: /tmp/pip-req-tracker-qri_lhu4
2021-07-14T07:04:54,045 Initialized build tracking at /tmp/pip-req-tracker-qri_lhu4
2021-07-14T07:04:54,046 Created build tracker: /tmp/pip-req-tracker-qri_lhu4
2021-07-14T07:04:54,046 Entered build tracker: /tmp/pip-req-tracker-qri_lhu4
2021-07-14T07:04:54,047 Created temporary directory: /tmp/pip-wheel-iaum73ze
2021-07-14T07:04:54,080 1 location(s) to search for versions of cluskit:
2021-07-14T07:04:54,080 * https://pypi.org/simple/cluskit/
2021-07-14T07:04:54,081 Fetching project page and analyzing links: https://pypi.org/simple/cluskit/
2021-07-14T07:04:54,082 Getting page https://pypi.org/simple/cluskit/
2021-07-14T07:04:54,084 Found index url https://pypi.org/simple
2021-07-14T07:04:54,266   Found link https://files.pythonhosted.org/packages/bf/5e/17c73a8a7c16fbd1552e26200d3b6106764385c150dd0c4b785a6abd21b4/cluskit-4.1.1.tar.gz#sha256=d5f370f47250ecaf2a2ba2e01c4edc105475f3c76b8e79a6d840f79bfa77d481 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.1
2021-07-14T07:04:54,267   Found link https://files.pythonhosted.org/packages/48/ad/d145607ebeeb170a6b5f38784b3a21b656834f4980e671c7885d4b608465/cluskit-4.1.2.tar.gz#sha256=09c192625bf3afb0778cbeeb25eb1a58942a139398f4c434dd623923a85c4458 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.2
2021-07-14T07:04:54,268   Found link https://files.pythonhosted.org/packages/88/66/600bdf10dc110a5341ddac9ef53a1d6a6e76612991bd8fb8bdc18a7db0bc/cluskit-4.1.3.tar.gz#sha256=63b025cc4bde39504bb8a19eaa4b8c31c2ae9202de1d6cb51d102c3371138028 (from https://pypi.org/simple/cluskit/), version: 4.1.3
2021-07-14T07:04:54,269   Found link https://files.pythonhosted.org/packages/57/26/7bb63fb9a6d93a50883cab11e12e0f4abce59438e8469253f0cd8b31c129/cluskit-4.1.4.tar.gz#sha256=02d2b87aabd81d1023d47c364d9018189e026484707d035d16d369c7ea2e2b71 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.4
2021-07-14T07:04:54,270   Found link https://files.pythonhosted.org/packages/15/e2/fc0d985e1da25702fe824843e72d605d08dc12275aa850bd1cedf26936e3/cluskit-4.1.5.tar.gz#sha256=24fd94552eee81fb71644223a6effe4cb87c35a9f8c32be43fd65a580490e4fd (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.5
2021-07-14T07:04:54,270   Found link https://files.pythonhosted.org/packages/d7/7c/2e7baf51ea88d5900c5fe5d1958e417a3af99086d8c231ddc572f0a45912/cluskit-4.1.6.tar.gz#sha256=5b05738212e2ae2a0f343dba329600f830b2b745644bc59faa4a514fa71fe0fc (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.6
2021-07-14T07:04:54,271   Found link https://files.pythonhosted.org/packages/d8/b4/0d21a5c4ae9c947b019211b115fb5e409f00072fcb14826728d0b4474c47/cluskit-4.1.7.tar.gz#sha256=853fc5be301391cad97b86e6cb167405b8e2e4e5f4db3132faf8160daedb1434 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.7
2021-07-14T07:04:54,272   Found link https://files.pythonhosted.org/packages/df/79/1fdd4ebbb2db009fa29804ddf086376638e62fcb6fbe40b0c3a9f3fa5b42/cluskit-4.1.8.tar.gz#sha256=af38ca611e2f744dec77e9d1e08dcbacef61649eb7c89e09ffe659bd8abf7a3c (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.8
2021-07-14T07:04:54,273   Found link https://files.pythonhosted.org/packages/8a/96/d07f3e153c32d6cedd8787b8c65e7edd5370a8d8a5cf28a7fd59e6de0f9f/cluskit-4.1.9.tar.gz#sha256=e7ed2e1f051139fc39d389bbdd9a6f2165a0d8ee464f66e1a31d7a2e388be4bb (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.9
2021-07-14T07:04:54,274   Found link https://files.pythonhosted.org/packages/3c/07/5239086aec8d865d32d474ced38741764e560750fd52bb065accf18cf664/cluskit-4.2.0.tar.gz#sha256=46c41a1ed3b4322a3fd3aee65b5f861a209c8f81648b5b2fed8de8a3864e3a07 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.2.0
2021-07-14T07:04:54,274 Skipping link: not a file: https://pypi.org/simple/cluskit/
2021-07-14T07:04:54,295 Given no hashes to check 1 links for project 'cluskit': discarding no candidates
2021-07-14T07:04:54,320 Collecting cluskit==4.1.1
2021-07-14T07:04:54,322   Created temporary directory: /tmp/pip-unpack-t7j79k24
2021-07-14T07:04:54,495   Downloading cluskit-4.1.1.tar.gz (21 kB)
2021-07-14T07:04:54,554   Added cluskit==4.1.1 from https://files.pythonhosted.org/packages/bf/5e/17c73a8a7c16fbd1552e26200d3b6106764385c150dd0c4b785a6abd21b4/cluskit-4.1.1.tar.gz#sha256=d5f370f47250ecaf2a2ba2e01c4edc105475f3c76b8e79a6d840f79bfa77d481 to build tracker '/tmp/pip-req-tracker-qri_lhu4'
2021-07-14T07:04:54,555     Running setup.py (path:/tmp/pip-wheel-iaum73ze/cluskit_38af6d571bf548f68ec77bb21fc2a28f/setup.py) egg_info for package cluskit
2021-07-14T07:04:54,556     Created temporary directory: /tmp/pip-pip-egg-info-nyzhfzsb
2021-07-14T07:04:54,556     Running command python setup.py egg_info
2021-07-14T07:04:55,921     running egg_info
2021-07-14T07:04:55,925     creating /tmp/pip-pip-egg-info-nyzhfzsb/cluskit.egg-info
2021-07-14T07:04:55,927     writing /tmp/pip-pip-egg-info-nyzhfzsb/cluskit.egg-info/PKG-INFO
2021-07-14T07:04:55,929     writing dependency_links to /tmp/pip-pip-egg-info-nyzhfzsb/cluskit.egg-info/dependency_links.txt
2021-07-14T07:04:55,932     writing requirements to /tmp/pip-pip-egg-info-nyzhfzsb/cluskit.egg-info/requires.txt
2021-07-14T07:04:55,933     writing top-level names to /tmp/pip-pip-egg-info-nyzhfzsb/cluskit.egg-info/top_level.txt
2021-07-14T07:04:55,935     writing manifest file '/tmp/pip-pip-egg-info-nyzhfzsb/cluskit.egg-info/SOURCES.txt'
2021-07-14T07:04:56,323     reading manifest file '/tmp/pip-pip-egg-info-nyzhfzsb/cluskit.egg-info/SOURCES.txt'
2021-07-14T07:04:56,325     reading manifest template 'MANIFEST.in'
2021-07-14T07:04:56,327     adding license file 'LICENSE'
2021-07-14T07:04:56,330     writing manifest file '/tmp/pip-pip-egg-info-nyzhfzsb/cluskit.egg-info/SOURCES.txt'
2021-07-14T07:04:56,426   Source in /tmp/pip-wheel-iaum73ze/cluskit_38af6d571bf548f68ec77bb21fc2a28f has version 4.1.1, which satisfies requirement cluskit==4.1.1 from https://files.pythonhosted.org/packages/bf/5e/17c73a8a7c16fbd1552e26200d3b6106764385c150dd0c4b785a6abd21b4/cluskit-4.1.1.tar.gz#sha256=d5f370f47250ecaf2a2ba2e01c4edc105475f3c76b8e79a6d840f79bfa77d481
2021-07-14T07:04:56,428   Removed cluskit==4.1.1 from https://files.pythonhosted.org/packages/bf/5e/17c73a8a7c16fbd1552e26200d3b6106764385c150dd0c4b785a6abd21b4/cluskit-4.1.1.tar.gz#sha256=d5f370f47250ecaf2a2ba2e01c4edc105475f3c76b8e79a6d840f79bfa77d481 from build tracker '/tmp/pip-req-tracker-qri_lhu4'
2021-07-14T07:04:56,481 Created temporary directory: /tmp/pip-unpack-rhf_8qlb
2021-07-14T07:04:56,481 Building wheels for collected packages: cluskit
2021-07-14T07:04:56,488   Created temporary directory: /tmp/pip-wheel-ddh64wn0
2021-07-14T07:04:56,488   Building wheel for cluskit (setup.py): started
2021-07-14T07:04:56,489   Destination directory: /tmp/pip-wheel-ddh64wn0
2021-07-14T07:04:56,489   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-iaum73ze/cluskit_38af6d571bf548f68ec77bb21fc2a28f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-iaum73ze/cluskit_38af6d571bf548f68ec77bb21fc2a28f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ddh64wn0
2021-07-14T07:04:58,008   running bdist_wheel
2021-07-14T07:04:58,189   running build
2021-07-14T07:04:58,189   running build_py
2021-07-14T07:04:58,338   creating build
2021-07-14T07:04:58,338   creating build/lib.linux-armv7l-3.9
2021-07-14T07:04:58,339   creating build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T07:04:58,340   copying clusgeo/delaunay.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T07:04:58,343   copying clusgeo/__init__.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T07:04:58,345   copying clusgeo/cluster.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T07:04:58,348   copying clusgeo/utils.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T07:04:58,351   copying clusgeo/build.py -> build/lib.linux-armv7l-3.9/clusgeo
2021-07-14T07:04:58,355   running build_ext
2021-07-14T07:04:58,361   building 'lib.libclusgeo3' extension
2021-07-14T07:04:58,362   creating build/temp.linux-armv7l-3.9
2021-07-14T07:04:58,362   creating build/temp.linux-armv7l-3.9/src
2021-07-14T07:04:58,363   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/clusGeo3.c -o build/temp.linux-armv7l-3.9/src/clusGeo3.o -O3 -std=c99
2021-07-14T07:04:58,647   src/clusGeo3.c: In function ‘findSurf’:
2021-07-14T07:04:58,648   src/clusGeo3.c:56:7: warning: unused variable ‘maxAtomIndx’ [-Wunused-variable]
2021-07-14T07:04:58,648      56 |   int maxAtomIndx;  double minVal;  int minAtomsI;
2021-07-14T07:04:58,648         |       ^~~~~~~~~~~
2021-07-14T07:04:58,649   src/clusGeo3.c:55:8: warning: unused variable ‘isSurf’ [-Wunused-variable]
2021-07-14T07:04:58,649      55 |   int* isSurf = (int*) malloc(sizeof(int)*size);
2021-07-14T07:04:58,649         |        ^~~~~~
2021-07-14T07:04:58,649   src/clusGeo3.c:53:10: warning: unused variable ‘xPosInit’ [-Wunused-variable]
2021-07-14T07:04:58,650      53 |   double xPosInit = xPos; double yPosInit = yPos; double zPosInit = zPos;
2021-07-14T07:04:58,650         |          ^~~~~~~~
2021-07-14T07:04:58,650   src/clusGeo3.c: In function ‘getEta1’:
2021-07-14T07:04:58,651   src/clusGeo3.c:92:10: warning: unused variable ‘distBuf’ [-Wunused-variable]
2021-07-14T07:04:58,651      92 |   double distBuf;
2021-07-14T07:04:58,651         |          ^~~~~~~
2021-07-14T07:04:58,792   src/clusGeo3.c: In function ‘findSurf’:
2021-07-14T07:04:58,792   src/clusGeo3.c:68:36: warning: ‘minAtomsI’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-14T07:04:58,792      68 |             surfAtomsBuff[marcher] = minAtomsI;
2021-07-14T07:04:58,793         |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2021-07-14T07:04:59,502   creating build/lib.linux-armv7l-3.9/lib
2021-07-14T07:04:59,502   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/clusGeo3.o -lm -o build/lib.linux-armv7l-3.9/lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so
2021-07-14T07:04:59,653   installing to build/bdist.linux-armv7l/wheel
2021-07-14T07:04:59,653   running install
2021-07-14T07:04:59,655   running install_lib
2021-07-14T07:04:59,660   creating build/bdist.linux-armv7l
2021-07-14T07:04:59,660   creating build/bdist.linux-armv7l/wheel
2021-07-14T07:04:59,662   creating build/bdist.linux-armv7l/wheel/lib
2021-07-14T07:04:59,663   copying build/lib.linux-armv7l-3.9/lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lib
2021-07-14T07:04:59,668   creating build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T07:04:59,669   copying build/lib.linux-armv7l-3.9/clusgeo/delaunay.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T07:04:59,671   copying build/lib.linux-armv7l-3.9/clusgeo/__init__.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T07:04:59,673   copying build/lib.linux-armv7l-3.9/clusgeo/cluster.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T07:04:59,676   copying build/lib.linux-armv7l-3.9/clusgeo/utils.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T07:04:59,679   copying build/lib.linux-armv7l-3.9/clusgeo/build.py -> build/bdist.linux-armv7l/wheel/clusgeo
2021-07-14T07:04:59,681   running install_egg_info
2021-07-14T07:04:59,707   running egg_info
2021-07-14T07:04:59,709   writing cluskit.egg-info/PKG-INFO
2021-07-14T07:04:59,711   writing dependency_links to cluskit.egg-info/dependency_links.txt
2021-07-14T07:04:59,712   writing requirements to cluskit.egg-info/requires.txt
2021-07-14T07:04:59,714   writing top-level names to cluskit.egg-info/top_level.txt
2021-07-14T07:04:59,746   reading manifest file 'cluskit.egg-info/SOURCES.txt'
2021-07-14T07:04:59,748   reading manifest template 'MANIFEST.in'
2021-07-14T07:04:59,750   adding license file 'LICENSE'
2021-07-14T07:04:59,753   writing manifest file 'cluskit.egg-info/SOURCES.txt'
2021-07-14T07:04:59,755   Copying cluskit.egg-info to build/bdist.linux-armv7l/wheel/cluskit-4.1.1-py3.9.egg-info
2021-07-14T07:04:59,769   running install_scripts
2021-07-14T07:04:59,861   creating build/bdist.linux-armv7l/wheel/cluskit-4.1.1.dist-info/WHEEL
2021-07-14T07:04:59,864   creating '/tmp/pip-wheel-ddh64wn0/cluskit-4.1.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T07:04:59,867   adding 'clusgeo/__init__.py'
2021-07-14T07:04:59,869   adding 'clusgeo/build.py'
2021-07-14T07:04:59,872   adding 'clusgeo/cluster.py'
2021-07-14T07:04:59,874   adding 'clusgeo/delaunay.py'
2021-07-14T07:04:59,877   adding 'clusgeo/utils.py'
2021-07-14T07:04:59,886   adding 'lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T07:04:59,889   adding 'cluskit-4.1.1.dist-info/LICENSE'
2021-07-14T07:04:59,890   adding 'cluskit-4.1.1.dist-info/METADATA'
2021-07-14T07:04:59,891   adding 'cluskit-4.1.1.dist-info/WHEEL'
2021-07-14T07:04:59,892   adding 'cluskit-4.1.1.dist-info/top_level.txt'
2021-07-14T07:04:59,893   adding 'cluskit-4.1.1.dist-info/RECORD'
2021-07-14T07:04:59,895   removing build/bdist.linux-armv7l/wheel
2021-07-14T07:05:00,001   Building wheel for cluskit (setup.py): finished with status 'done'
2021-07-14T07:05:00,003   Created wheel for cluskit: filename=cluskit-4.1.1-cp39-cp39-linux_armv7l.whl size=34260 sha256=d763308af3ff3809223d311ff5184f6b188c876b303201365374181d2035a814
2021-07-14T07:05:00,004   Stored in directory: /tmp/pip-ephem-wheel-cache-23lqdm_u/wheels/89/3e/59/f638c18db663923786d79c334707ea517d4e5c19e6f629b1c4
2021-07-14T07:05:00,014 Successfully built cluskit
2021-07-14T07:05:00,018 Removed build tracker: '/tmp/pip-req-tracker-qri_lhu4'