2021-07-14T07:18:05,481 Created temporary directory: /tmp/pip-ephem-wheel-cache-p918zcpg 2021-07-14T07:18:05,484 Created temporary directory: /tmp/pip-req-tracker-yo2sll25 2021-07-14T07:18:05,484 Initialized build tracking at /tmp/pip-req-tracker-yo2sll25 2021-07-14T07:18:05,485 Created build tracker: /tmp/pip-req-tracker-yo2sll25 2021-07-14T07:18:05,485 Entered build tracker: /tmp/pip-req-tracker-yo2sll25 2021-07-14T07:18:05,485 Created temporary directory: /tmp/pip-wheel-e6xn_k88 2021-07-14T07:18:05,515 1 location(s) to search for versions of asap3: 2021-07-14T07:18:05,515 * https://pypi.org/simple/asap3/ 2021-07-14T07:18:05,515 Fetching project page and analyzing links: https://pypi.org/simple/asap3/ 2021-07-14T07:18:05,516 Getting page https://pypi.org/simple/asap3/ 2021-07-14T07:18:05,517 Found index url https://pypi.org/simple 2021-07-14T07:18:05,715 Found link https://files.pythonhosted.org/packages/b3/18/a0fd1f238ed751f8882f815a62354e9e6df3077a9afe218d7754a2fd6a5d/asap3-3.9.6.tar.gz#sha256=9c2895508d6ef7806769ff2bd7d783a895b145543cf906d886192ae0ffc2280d (from https://pypi.org/simple/asap3/), version: 3.9.6 2021-07-14T07:18:05,715 Found link https://files.pythonhosted.org/packages/6d/4b/7623da3d3d4086c524a94def4340bf1e1b4aee1c935420fad6123b20d678/asap3-3.10.0.tar.gz#sha256=4ccb0640ce65acecccd4e871353d6cf94521577507c397623a31e47cf6c624eb (from https://pypi.org/simple/asap3/), version: 3.10.0 2021-07-14T07:18:05,716 Found link https://files.pythonhosted.org/packages/a8/18/3552565db206a682f6c934e8f1291a71095f21b6387d3d2c284c071efe11/asap3-3.10.2.tar.gz#sha256=60ec50c9c50d1b3115edde2ab8f2f42370e08f6eb15c14de0350724d78c47df1 (from https://pypi.org/simple/asap3/), version: 3.10.2 2021-07-14T07:18:05,716 Found link https://files.pythonhosted.org/packages/46/93/a36962deb1049cd6c189fc9944213a7456fc78d7158273a4cf494503e4b0/asap3-3.10.3.tar.gz#sha256=9fabec07296c83fc33c41ac2475e57bd3a2ef688a8364bc3000e70b7195c396e (from https://pypi.org/simple/asap3/), version: 3.10.3 2021-07-14T07:18:05,716 Found link https://files.pythonhosted.org/packages/51/a7/753ffcd46d2da6bb3d07bbe7e2bf320b71e19568b43fc9f3f774cf741f33/asap3-3.10.5.tar.gz#sha256=909682a35b7336bb7deaaa75f697ba26affbff27ad17e3b9fca4a1b3717206c7 (from https://pypi.org/simple/asap3/), version: 3.10.5 2021-07-14T07:18:05,717 Found link https://files.pythonhosted.org/packages/21/ee/fcceabc5e6c11a3398a1039f4ca39c627fafe6176cc6540aedb75f4384f6/asap3-3.10.6.tar.gz#sha256=832ab0e94903efe9ee632db20c56ed605386fc2e62bf863ae3bf81092047ae95 (from https://pypi.org/simple/asap3/), version: 3.10.6 2021-07-14T07:18:05,717 Found link https://files.pythonhosted.org/packages/28/af/109859a068fb8f90b0fa9a594486480b8ae7e9f911593441d8ce82a0f9dd/asap3-3.10.7.tar.gz#sha256=20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773 (from https://pypi.org/simple/asap3/), version: 3.10.7 2021-07-14T07:18:05,717 Found link https://files.pythonhosted.org/packages/2a/66/8dec58eb472f7855d0837b93daa75825a7bc243b773566902d00b043be18/asap3-3.10.8.tar.gz#sha256=a167e89c717cc75c1ff41bb370b9454563c29333e49b7383e668094af547d139 (from https://pypi.org/simple/asap3/), version: 3.10.8 2021-07-14T07:18:05,718 Found link https://files.pythonhosted.org/packages/31/d5/4dea3371c9d83192c450b8905074653276fb33e9f0e20207471cc0025d09/asap3-3.10.10.tar.gz#sha256=58cc70379ff3de727ad2e19882082c40a4780c72ae86e21decd15a8df1e202f0 (from https://pypi.org/simple/asap3/), version: 3.10.10 2021-07-14T07:18:05,718 Found link https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 (from https://pypi.org/simple/asap3/), version: 3.11.3 2021-07-14T07:18:05,718 Found link https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a (from https://pypi.org/simple/asap3/), version: 3.11.5 2021-07-14T07:18:05,718 Found link https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 (from https://pypi.org/simple/asap3/), version: 3.11.6 2021-07-14T07:18:05,719 Found link https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b (from https://pypi.org/simple/asap3/), version: 3.11.8 2021-07-14T07:18:05,719 Found link https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce (from https://pypi.org/simple/asap3/), version: 3.11.9 2021-07-14T07:18:05,719 Found link https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 (from https://pypi.org/simple/asap3/), version: 3.11.10 2021-07-14T07:18:05,720 Found link https://files.pythonhosted.org/packages/3a/52/77063f553b0ded38f99f97c06ee7c81cc9bfeda82b571bdcb25957f80b04/asap3-3.12.1.tar.gz#sha256=6852d7b3f668b8f740f1be7a0b8ead6b831cb1c381b02448e3e9a578d9efb182 (from https://pypi.org/simple/asap3/), version: 3.12.1 2021-07-14T07:18:05,720 Found link https://files.pythonhosted.org/packages/dd/fc/d1953b172e106f00e1cc19c0f830746cb2dec3d1cdeb5ad0ce4347f5a4d9/asap3-3.12.2.tar.gz#sha256=b6c03c790ba4c9f0d231659078c26ce8193fa21314bf2fe4adaa7899d5cd9dbe (from https://pypi.org/simple/asap3/), version: 3.12.2 2021-07-14T07:18:05,720 Found link https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 (from https://pypi.org/simple/asap3/), version: 3.12.3 2021-07-14T07:18:05,720 Found link https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 (from https://pypi.org/simple/asap3/), version: 3.12.7 2021-07-14T07:18:05,721 Found link https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 (from https://pypi.org/simple/asap3/), version: 3.12.8 2021-07-14T07:18:05,721 Skipping link: not a file: https://pypi.org/simple/asap3/ 2021-07-14T07:18:05,742 Given no hashes to check 1 links for project 'asap3': discarding no candidates 2021-07-14T07:18:05,761 Collecting asap3==3.11.6 2021-07-14T07:18:05,763 Created temporary directory: /tmp/pip-unpack-wtu7rixb 2021-07-14T07:18:05,807 Downloading asap3-3.11.6.tar.gz (801 kB) 2021-07-14T07:18:07,009 Added asap3==3.11.6 from https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 to build tracker '/tmp/pip-req-tracker-yo2sll25' 2021-07-14T07:18:07,010 Running setup.py (path:/tmp/pip-wheel-e6xn_k88/asap3_006f03a1ab56486689fa0490895554ef/setup.py) egg_info for package asap3 2021-07-14T07:18:07,010 Created temporary directory: /tmp/pip-pip-egg-info-afwddb3w 2021-07-14T07:18:07,011 Running command python setup.py egg_info 2021-07-14T07:18:08,412 Asap version number: 3.11.6 2021-07-14T07:18:08,413 customize-local.py not found - this is OK. 2021-07-14T07:18:08,413 customize-piwheels35.py not found - this is OK. 2021-07-14T07:18:08,413 Reading customization from customize.py 2021-07-14T07:18:08,414 Recording version info into VersionInfo_autogen 2021-07-14T07:18:08,414 CC = arm-linux-gnueabihf-gcc -pthread 2021-07-14T07:18:08,414 CFLAGS = -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 2021-07-14T07:18:08,414 Identifying source files 2021-07-14T07:18:08,414 Identifying Python submodules 2021-07-14T07:18:08,414 running egg_info 2021-07-14T07:18:08,415 creating /tmp/pip-pip-egg-info-afwddb3w/asap3.egg-info 2021-07-14T07:18:08,416 writing /tmp/pip-pip-egg-info-afwddb3w/asap3.egg-info/PKG-INFO 2021-07-14T07:18:08,418 writing dependency_links to /tmp/pip-pip-egg-info-afwddb3w/asap3.egg-info/dependency_links.txt 2021-07-14T07:18:08,421 writing top-level names to /tmp/pip-pip-egg-info-afwddb3w/asap3.egg-info/top_level.txt 2021-07-14T07:18:08,422 writing manifest file '/tmp/pip-pip-egg-info-afwddb3w/asap3.egg-info/SOURCES.txt' 2021-07-14T07:18:08,587 reading manifest file '/tmp/pip-pip-egg-info-afwddb3w/asap3.egg-info/SOURCES.txt' 2021-07-14T07:18:08,589 reading manifest template 'MANIFEST.in' 2021-07-14T07:18:08,647 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T07:18:08,647 adding license file 'LICENSE' 2021-07-14T07:18:08,647 adding license file 'LICENSE.LESSER' 2021-07-14T07:18:08,666 writing manifest file '/tmp/pip-pip-egg-info-afwddb3w/asap3.egg-info/SOURCES.txt' 2021-07-14T07:18:08,771 Source in /tmp/pip-wheel-e6xn_k88/asap3_006f03a1ab56486689fa0490895554ef has version 3.11.6, which satisfies requirement asap3==3.11.6 from https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 2021-07-14T07:18:08,772 Removed asap3==3.11.6 from https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 from build tracker '/tmp/pip-req-tracker-yo2sll25' 2021-07-14T07:18:08,776 Created temporary directory: /tmp/pip-unpack-441m1_mx 2021-07-14T07:18:08,776 Building wheels for collected packages: asap3 2021-07-14T07:18:08,780 Created temporary directory: /tmp/pip-wheel-5i1wab0_ 2021-07-14T07:18:08,780 Building wheel for asap3 (setup.py): started 2021-07-14T07:18:08,781 Destination directory: /tmp/pip-wheel-5i1wab0_ 2021-07-14T07:18:08,781 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-e6xn_k88/asap3_006f03a1ab56486689fa0490895554ef/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-e6xn_k88/asap3_006f03a1ab56486689fa0490895554ef/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5i1wab0_ 2021-07-14T07:18:09,977 Asap version number: 3.11.6 2021-07-14T07:18:09,978 customize-local.py not found - this is OK. 2021-07-14T07:18:09,978 customize-piwheels35.py not found - this is OK. 2021-07-14T07:18:09,978 Reading customization from customize.py 2021-07-14T07:18:09,981 Identifying source files 2021-07-14T07:18:09,984 Identifying Python submodules 2021-07-14T07:18:10,153 running bdist_wheel 2021-07-14T07:18:10,156 running build 2021-07-14T07:18:10,156 running build_py 2021-07-14T07:18:10,293 creating build 2021-07-14T07:18:10,293 creating build/lib.linux-armv7l-3.9 2021-07-14T07:18:10,294 creating build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,295 copying Python/asap3/version.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,297 copying Python/asap3/__init__.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,299 copying Python/asap3/fixepydoc.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,300 copying Python/asap3/GuptaParameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,302 copying Python/asap3/EMT2013Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,304 copying Python/asap3/EMT2011Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,305 copying Python/asap3/constraints.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,307 copying Python/asap3/EMT2011_py.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,310 copying Python/asap3/mpi.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,312 copying Python/asap3/timing.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,314 copying Python/asap3/memory.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,316 copying Python/asap3/testtools.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T07:18:10,319 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T07:18:10,319 copying Python/asap3/MonteCarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T07:18:10,321 copying Python/asap3/MonteCarlo/Basin.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T07:18:10,323 copying Python/asap3/MonteCarlo/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T07:18:10,325 copying Python/asap3/MonteCarlo/Start.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T07:18:10,327 copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T07:18:10,329 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T07:18:10,330 copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T07:18:10,332 copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T07:18:10,335 copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T07:18:10,338 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T07:18:10,339 copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T07:18:10,341 copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T07:18:10,344 copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T07:18:10,346 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,347 copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,350 copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,353 copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,354 copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,356 copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,358 copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,360 copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,362 copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,364 copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T07:18:10,367 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T07:18:10,368 copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T07:18:10,370 copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T07:18:10,371 copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T07:18:10,374 copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T07:18:10,376 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T07:18:10,377 copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T07:18:10,379 copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T07:18:10,382 copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T07:18:10,386 creating build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T07:18:10,387 copying Python/asap3/setup/multidislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T07:18:10,390 copying Python/asap3/setup/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T07:18:10,391 copying Python/asap3/setup/displacementfield.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T07:18:10,393 copying Python/asap3/setup/dislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T07:18:10,396 copying Python/asap3/setup/VelocityDistribution.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T07:18:10,399 creating build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,399 copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,402 copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,404 copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,406 copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,407 copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,409 copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,412 copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,414 copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,416 copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T07:18:10,419 creating build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T07:18:10,419 copying Python/asap3/optimize/fire.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T07:18:10,421 copying Python/asap3/optimize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T07:18:10,423 copying Python/asap3/optimize/mdmin.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T07:18:10,425 copying Python/asap3/optimize/optimize.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T07:18:10,427 creating build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T07:18:10,428 copying Python/asap3/io/ReadOldFiles.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T07:18:10,430 copying Python/asap3/io/cpu_setup.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T07:18:10,432 copying Python/asap3/io/__init__.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T07:18:10,434 copying Python/asap3/io/trajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T07:18:10,436 copying Python/asap3/io/bundletrajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T07:18:10,440 creating build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,441 copying Python/asap3/analysis/cutcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,443 copying Python/asap3/analysis/rdf.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,445 copying Python/asap3/analysis/averagepositions.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,448 copying Python/asap3/analysis/localstructure.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,450 copying Python/asap3/analysis/__init__.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,452 copying Python/asap3/analysis/clusterposition.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,454 copying Python/asap3/analysis/particle.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,456 copying Python/asap3/analysis/findcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,458 copying Python/asap3/analysis/ptm.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T07:18:10,462 creating build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,462 copying Python/asap3/Tools/Timing.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,465 copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,467 copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,469 copying Python/asap3/Tools/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,471 copying Python/asap3/Tools/MaterialProperties.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,473 copying Python/asap3/Tools/niflheim.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,475 copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,478 copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,480 copying Python/asap3/Tools/ElasticConstants.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,483 copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T07:18:10,485 creating build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,486 copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,489 copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,492 copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,494 copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,496 copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,499 copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,501 copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,503 copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,507 copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,511 copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,513 copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T07:18:10,516 creating build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,517 copying Python/asap3/md/nvtberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,519 copying Python/asap3/md/__init__.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,521 copying Python/asap3/md/verlet_fast.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,522 copying Python/asap3/md/langevin.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,525 copying Python/asap3/md/velocitydistribution.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,527 copying Python/asap3/md/md.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,528 copying Python/asap3/md/nptberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,530 copying Python/asap3/md/npt.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,532 copying Python/asap3/md/verlet.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T07:18:10,535 creating build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,536 copying Python/asap3/Internal/Builtins.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,538 copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,540 copying Python/asap3/Internal/Collector.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,542 copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,545 copying Python/asap3/Internal/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,546 copying Python/asap3/Internal/ListOfElements.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,548 copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,550 copying Python/asap3/Internal/Threads.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,552 copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,555 copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,558 copying Python/asap3/Internal/EMTParameters.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,560 copying Python/asap3/Internal/CheckArray.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,562 copying Python/asap3/Internal/checkversion.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,564 copying Python/asap3/Internal/Subject.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T07:18:10,566 creating build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T07:18:10,567 copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T07:18:10,583 running build_ext 2021-07-14T07:18:10,589 building '_asap_p3' extension 2021-07-14T07:18:10,591 creating build/temp.linux-armv7l-3.9 2021-07-14T07:18:10,591 creating build/temp.linux-armv7l-3.9/Basics 2021-07-14T07:18:10,593 creating build/temp.linux-armv7l-3.9/Brenner 2021-07-14T07:18:10,594 creating build/temp.linux-armv7l-3.9/Interface 2021-07-14T07:18:10,595 creating build/temp.linux-armv7l-3.9/PTM 2021-07-14T07:18:10,596 creating build/temp.linux-armv7l-3.9/PTM/qcprot 2021-07-14T07:18:10,597 creating build/temp.linux-armv7l-3.9/PTM/voronoi 2021-07-14T07:18:10,598 creating build/temp.linux-armv7l-3.9/Potentials 2021-07-14T07:18:10,599 creating build/temp.linux-armv7l-3.9/Tools 2021-07-14T07:18:10,600 creating build/temp.linux-armv7l-3.9/VersionInfo_autogen 2021-07-14T07:18:10,600 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/AsapObject.cpp -o build/temp.linux-armv7l-3.9/Basics/AsapObject.o 2021-07-14T07:18:11,650 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Debug.cpp -o build/temp.linux-armv7l-3.9/Basics/Debug.o 2021-07-14T07:18:13,215 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/DynamicAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o 2021-07-14T07:18:15,635 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Exception.cpp -o build/temp.linux-armv7l-3.9/Basics/Exception.o 2021-07-14T07:18:17,802 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImageAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o 2021-07-14T07:18:19,320 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:19,321 from Basics/ImageAtoms.h:31, 2021-07-14T07:18:19,321 from Basics/ImageAtoms.cpp:27: 2021-07-14T07:18:19,321 Basics/ImageAtoms.cpp: In destructor ‘virtual AsapNS::ImageAtoms::~ImageAtoms()’: 2021-07-14T07:18:19,321 Basics/Exception.h:158:5: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 2021-07-14T07:18:19,321 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T07:18:19,322 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:19,322 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T07:18:19,322 52 | ASSERT(refcount == 0); 2021-07-14T07:18:19,322 | ^~~~~~ 2021-07-14T07:18:19,322 Basics/Exception.h:158:5: note: in C++11 destructors default to ‘noexcept’ 2021-07-14T07:18:19,322 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T07:18:19,323 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:19,323 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T07:18:19,323 52 | ASSERT(refcount == 0); 2021-07-14T07:18:19,323 | ^~~~~~ 2021-07-14T07:18:19,323 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T07:18:19,323 Basics/ImageAtoms.cpp:82:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,323 82 | if (pos.capacity() < nTot) 2021-07-14T07:18:19,324 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T07:18:19,324 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:19,324 from Basics/ImageAtoms.h:31, 2021-07-14T07:18:19,324 from Basics/ImageAtoms.cpp:27: 2021-07-14T07:18:19,324 Basics/ImageAtoms.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,324 84 | ASSERT(allpositions.size() >= nTot); 2021-07-14T07:18:19,324 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T07:18:19,325 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:19,325 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:19,325 | ^~ 2021-07-14T07:18:19,328 Basics/ImageAtoms.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,328 86 | ASSERT(pos.size() == nTot); 2021-07-14T07:18:19,328 | ~~~~~~~~~~~^~~~~~~ 2021-07-14T07:18:19,328 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:19,329 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:19,329 | ^~ 2021-07-14T07:18:19,329 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T07:18:19,329 Basics/ImageAtoms.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,329 95 | ASSERT(allpositions.size() >= n); 2021-07-14T07:18:19,329 | ~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T07:18:19,330 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:19,330 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:19,330 | ^~ 2021-07-14T07:18:19,330 Basics/ImageAtoms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,330 97 | if (pos.capacity() < n) 2021-07-14T07:18:19,330 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T07:18:19,349 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:19,350 from Basics/ImageAtoms.h:31, 2021-07-14T07:18:19,350 from Basics/ImageAtoms.cpp:27: 2021-07-14T07:18:19,350 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::make_images(double)’: 2021-07-14T07:18:19,350 Basics/ImageAtoms.cpp:170:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,350 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); 2021-07-14T07:18:19,350 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:19,351 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:19,351 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:19,351 | ^~ 2021-07-14T07:18:19,354 Basics/ImageAtoms.cpp:221:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,354 221 | if (allpositions.capacity() < nSize) 2021-07-14T07:18:19,354 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T07:18:19,354 Basics/ImageAtoms.cpp:223:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,354 223 | if (allnumbers.capacity() < nSize) 2021-07-14T07:18:19,354 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T07:18:19,355 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:19,356 from Basics/ImageAtoms.h:31, 2021-07-14T07:18:19,356 from Basics/ImageAtoms.cpp:27: 2021-07-14T07:18:19,356 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::update_images()’: 2021-07-14T07:18:19,356 Basics/ImageAtoms.cpp:238:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,356 238 | ASSERT(allpositions.size() <= nSize); 2021-07-14T07:18:19,356 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:18:19,357 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:19,357 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:19,357 | ^~ 2021-07-14T07:18:19,357 Basics/ImageAtoms.cpp:241:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:19,357 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); 2021-07-14T07:18:19,357 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:19,358 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:19,358 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:19,358 | ^~ 2021-07-14T07:18:21,780 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImagePotential.cpp -o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o 2021-07-14T07:18:23,383 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::Vec]’: 2021-07-14T07:18:23,384 Basics/ImagePotential.cpp:93:38: required from here 2021-07-14T07:18:23,384 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:23,384 139 | for (int i = 0; i < orig_map.size(); i++) 2021-07-14T07:18:23,384 | ~~^~~~~~~~~~~~~~~~~ 2021-07-14T07:18:23,391 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::SymTensor]’: 2021-07-14T07:18:23,391 Basics/ImagePotential.cpp:118:45: required from here 2021-07-14T07:18:23,391 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:24,876 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Langevin.cpp -o build/temp.linux-armv7l-3.9/Basics/Langevin.o 2021-07-14T07:18:27,441 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Matrix3x3.cpp -o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o 2021-07-14T07:18:28,554 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MolecularDynamics.cpp -o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o 2021-07-14T07:18:29,995 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:29,995 from Basics/MolecularDynamics.h:30, 2021-07-14T07:18:29,995 from Basics/MolecularDynamics.cpp:27: 2021-07-14T07:18:29,995 Basics/MolecularDynamics.cpp: In member function ‘bool AsapNS::MolecularDynamics::CallObservers(PyObject*)’: 2021-07-14T07:18:29,996 Basics/MolecularDynamics.cpp:238:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<_object*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:29,996 238 | ASSERT(n == obs_kwargs.size()); 2021-07-14T07:18:29,996 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:29,996 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:29,996 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:29,996 | ^~ 2021-07-14T07:18:31,263 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MonteCarloAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o 2021-07-14T07:18:33,767 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborCellLocator.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o 2021-07-14T07:18:35,462 Basics/NeighborCellLocator.cpp: In destructor ‘virtual AsapNS::NeighborCellLocator::~NeighborCellLocator()’: 2021-07-14T07:18:35,462 Basics/NeighborCellLocator.cpp:87:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:35,462 87 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T07:18:35,462 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:35,466 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:35,466 from Basics/NeighborCellLocator.h:35, 2021-07-14T07:18:35,466 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T07:18:35,466 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::MakeList()’: 2021-07-14T07:18:35,466 Basics/NeighborCellLocator.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,466 128 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T07:18:35,467 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T07:18:35,467 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:35,467 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:35,467 | ^~ 2021-07-14T07:18:35,480 Basics/NeighborCellLocator.cpp:313:42: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,481 313 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) 2021-07-14T07:18:35,481 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T07:18:35,481 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:35,481 from Basics/NeighborCellLocator.h:35, 2021-07-14T07:18:35,482 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T07:18:35,482 Basics/NeighborCellLocator.cpp:324:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,482 324 | ASSERT(cells.size() == nTotalCells[3]); 2021-07-14T07:18:35,482 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T07:18:35,482 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:35,483 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:35,483 | ^~ 2021-07-14T07:18:35,483 Basics/NeighborCellLocator.cpp:325:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:35,483 325 | for (int i = 0; i < cells.size(); i++) 2021-07-14T07:18:35,483 | ~~^~~~~~~~~~~~~~ 2021-07-14T07:18:35,484 Basics/NeighborCellLocator.cpp:361:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:35,484 361 | for (int i = 0; i < cells.size(); i++) 2021-07-14T07:18:35,485 | ~~^~~~~~~~~~~~~~ 2021-07-14T07:18:35,505 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::MakeNeighboringCellLists()’: 2021-07-14T07:18:35,505 Basics/NeighborCellLocator.cpp:476:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:35,505 476 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T07:18:35,505 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:35,505 Basics/NeighborCellLocator.cpp:479:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:35,506 479 | for (int i = 0; i < cells.size(); i++) 2021-07-14T07:18:35,506 | ~~^~~~~~~~~~~~~~ 2021-07-14T07:18:35,560 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:35,560 from Basics/NeighborCellLocator.h:35, 2021-07-14T07:18:35,560 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T07:18:35,561 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::ScaleAndNormalizePositions()’: 2021-07-14T07:18:35,561 Basics/NeighborCellLocator.cpp:933:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,561 933 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T07:18:35,561 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T07:18:35,561 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:35,561 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:35,561 | ^~ 2021-07-14T07:18:35,562 Basics/NeighborCellLocator.cpp:940:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,562 940 | if (wrappedPositions.capacity() < spsz) 2021-07-14T07:18:35,562 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T07:18:35,562 Basics/NeighborCellLocator.cpp:943:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,562 943 | if (offsetPositions.capacity() < spsz) 2021-07-14T07:18:35,562 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T07:18:35,563 Basics/NeighborCellLocator.cpp:980:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,564 980 | if (wrappedPositions.capacity() < spsz) 2021-07-14T07:18:35,564 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T07:18:35,564 Basics/NeighborCellLocator.cpp:983:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,564 983 | if (scaledOffsetPositions.capacity() < spsz) 2021-07-14T07:18:35,564 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T07:18:35,577 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:35,577 from Basics/NeighborCellLocator.h:35, 2021-07-14T07:18:35,577 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T07:18:35,577 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::RenormalizePositions()’: 2021-07-14T07:18:35,578 Basics/NeighborCellLocator.cpp:1105:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,578 1105 | ASSERT(referencePositions.size() == nAtoms); 2021-07-14T07:18:35,578 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T07:18:35,578 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:35,578 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:35,578 | ^~ 2021-07-14T07:18:35,578 Basics/NeighborCellLocator.cpp:1106:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,579 1106 | ASSERT(offsetPositions.size() == nAllAtoms); 2021-07-14T07:18:35,579 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T07:18:35,579 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:35,579 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:35,579 | ^~ 2021-07-14T07:18:35,581 Basics/NeighborCellLocator.cpp:1123:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,582 1123 | ASSERT(wrappedPositions.size() == nAllAtoms); 2021-07-14T07:18:35,582 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T07:18:35,582 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:35,582 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:35,582 | ^~ 2021-07-14T07:18:35,597 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::print_info(int)’: 2021-07-14T07:18:35,597 Basics/NeighborCellLocator.cpp:1254:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,598 1254 | if (referencePositions.size() > n) 2021-07-14T07:18:35,598 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T07:18:35,599 Basics/NeighborCellLocator.cpp:1256:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,599 1256 | if (wrappedPositions.size() > n) 2021-07-14T07:18:35,599 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T07:18:35,600 Basics/NeighborCellLocator.cpp:1258:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,600 1258 | if (scaledPositions.size() > n) 2021-07-14T07:18:35,600 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T07:18:35,601 Basics/NeighborCellLocator.cpp:1260:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,602 1260 | if (offsetPositions.size() > n) 2021-07-14T07:18:35,602 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T07:18:35,602 Basics/NeighborCellLocator.cpp:1262:36: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,603 1262 | if (scaledOffsetPositions.size() > n) 2021-07-14T07:18:35,603 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T07:18:35,608 Basics/NeighborCellLocator.cpp: In member function ‘virtual long int AsapNS::NeighborCellLocator::PrintMemory() const’: 2021-07-14T07:18:35,609 Basics/NeighborCellLocator.cpp:1294:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:35,609 1294 | if (i->size() > longest) 2021-07-14T07:18:35,609 | ~~~~~~~~~~^~~~~~~~~ 2021-07-14T07:18:42,206 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList.o 2021-07-14T07:18:43,909 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::MakeList()’: 2021-07-14T07:18:43,910 Basics/NeighborList.cpp:126:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:43,910 126 | if (nAllAtoms != nbList.size()) 2021-07-14T07:18:43,910 | ~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T07:18:43,910 Basics/NeighborList.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:43,910 128 | if (fulllists && (nAllAtoms != complNbList.size())) 2021-07-14T07:18:43,910 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:43,930 Basics/NeighborList.cpp:200:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:43,930 200 | if (nbList[i].capacity() < reservedLength) 2021-07-14T07:18:43,931 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T07:18:43,931 Basics/NeighborList.cpp:210:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:43,931 210 | if (complNbList[i].capacity() < reservedLength) 2021-07-14T07:18:43,931 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T07:18:43,938 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T07:18:43,938 Basics/NeighborList.cpp:357:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:43,938 357 | if (size < nbList[a1].size()) 2021-07-14T07:18:43,938 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:43,947 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetFullNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T07:18:43,947 Basics/NeighborList.cpp:477:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:43,947 477 | if (size < nbList[a1].size() + complNbList[a1].size()) 2021-07-14T07:18:43,947 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:43,984 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::RemakeLists(const std::set&, std::set&)’: 2021-07-14T07:18:43,984 Basics/NeighborList.cpp:624:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T07:18:43,984 624 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != complNbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T07:18:43,987 Basics/NeighborList.cpp:654:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T07:18:43,987 654 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != nbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T07:18:44,003 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::CheckFullListConsistency(std::string, bool)’: 2021-07-14T07:18:44,003 Basics/NeighborList.cpp:756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T07:18:44,003 756 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T07:18:44,003 Basics/NeighborList.cpp:758:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T07:18:44,004 758 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T07:18:44,015 Basics/NeighborList.cpp:795:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T07:18:44,016 795 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T07:18:44,016 Basics/NeighborList.cpp:797:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T07:18:44,016 797 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T07:18:44,027 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::print_info(int)’: 2021-07-14T07:18:44,027 Basics/NeighborList.cpp:834:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:44,027 834 | for (int i = 0; i < nbList[n].size(); i++) 2021-07-14T07:18:44,027 | ~~^~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:44,029 Basics/NeighborList.cpp:840:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:44,029 840 | for (int i = 0; i < complNbList[n].size(); i++) 2021-07-14T07:18:44,029 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:44,039 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::update_translationvectors()’: 2021-07-14T07:18:44,039 Basics/NeighborList.cpp:910:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:44,039 910 | for (int i = 0; i < translationTable.size(); i++) 2021-07-14T07:18:44,039 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:45,617 In file included from /usr/include/c++/10/vector:72, 2021-07-14T07:18:45,617 from Basics/AtomsBasis.h:33, 2021-07-14T07:18:45,618 from Basics/Atoms.h:36, 2021-07-14T07:18:45,618 from Basics/NeighborLocator.h:41, 2021-07-14T07:18:45,618 from Basics/NeighborList.h:37, 2021-07-14T07:18:45,618 from Basics/NeighborList.cpp:29: 2021-07-14T07:18:45,618 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T07:18:45,618 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:18:45,618 721 | vector<_Tp, _Alloc>:: 2021-07-14T07:18:45,619 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:45,619 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:45,619 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:45,709 In file included from /usr/include/c++/10/vector:67, 2021-07-14T07:18:45,709 from Basics/AtomsBasis.h:33, 2021-07-14T07:18:45,709 from Basics/Atoms.h:36, 2021-07-14T07:18:45,710 from Basics/NeighborLocator.h:41, 2021-07-14T07:18:45,710 from Basics/NeighborList.h:37, 2021-07-14T07:18:45,710 from Basics/NeighborList.cpp:29: 2021-07-14T07:18:45,710 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T07:18:45,710 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:18:45,710 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T07:18:45,710 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:45,711 1666 | std::__iterator_category(__first)); 2021-07-14T07:18:45,711 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:45,711 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:45,725 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T07:18:45,725 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:18:45,725 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T07:18:45,725 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:45,726 1666 | std::__iterator_category(__first)); 2021-07-14T07:18:45,726 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:45,726 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:48,597 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList2013.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o 2021-07-14T07:18:50,264 Basics/NeighborList2013.cpp: In member function ‘virtual int AsapNS::NeighborList2013::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T07:18:50,265 Basics/NeighborList2013.cpp:33:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:18:50,265 33 | if (size < nbList[a1].size()) 2021-07-14T07:18:50,265 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:50,903 In file included from /usr/include/c++/10/vector:72, 2021-07-14T07:18:50,903 from Basics/AtomsBasis.h:33, 2021-07-14T07:18:50,903 from Basics/Atoms.h:36, 2021-07-14T07:18:50,903 from Basics/NeighborLocator.h:41, 2021-07-14T07:18:50,903 from Basics/NeighborList.h:37, 2021-07-14T07:18:50,903 from Basics/NeighborList2013.h:11, 2021-07-14T07:18:50,903 from Basics/NeighborList2013.cpp:8: 2021-07-14T07:18:50,904 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T07:18:50,904 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:18:50,904 721 | vector<_Tp, _Alloc>:: 2021-07-14T07:18:50,904 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:50,904 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:50,904 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:50,997 In file included from /usr/include/c++/10/vector:67, 2021-07-14T07:18:50,998 from Basics/AtomsBasis.h:33, 2021-07-14T07:18:50,998 from Basics/Atoms.h:36, 2021-07-14T07:18:50,998 from Basics/NeighborLocator.h:41, 2021-07-14T07:18:50,998 from Basics/NeighborList.h:37, 2021-07-14T07:18:50,998 from Basics/NeighborList2013.h:11, 2021-07-14T07:18:50,998 from Basics/NeighborList2013.cpp:8: 2021-07-14T07:18:50,998 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T07:18:50,998 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:18:50,999 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T07:18:50,999 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:50,999 1666 | std::__iterator_category(__first)); 2021-07-14T07:18:50,999 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:50,999 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:51,015 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T07:18:51,015 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:18:51,015 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T07:18:51,015 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:51,016 1666 | std::__iterator_category(__first)); 2021-07-14T07:18:51,016 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:51,016 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:51,547 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NormalAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o 2021-07-14T07:18:53,065 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_numbers(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T07:18:53,065 Basics/NormalAtoms.cpp:410:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:53,066 410 | if (numbers.size() != nAtoms+nGhosts) 2021-07-14T07:18:53,066 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T07:18:53,069 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_positions(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T07:18:53,069 Basics/NormalAtoms.cpp:455:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:53,069 455 | bool pos_resized = (positions.size() != nAtoms+nGhosts); 2021-07-14T07:18:53,069 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T07:18:53,073 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:53,073 from Basics/NormalAtoms.cpp:27: 2021-07-14T07:18:53,073 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T07:18:53,073 Basics/NormalAtoms.cpp:513:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:53,073 513 | ASSERT(positions.size() == nAtoms + nGhosts); 2021-07-14T07:18:53,074 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:53,074 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:53,074 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:53,074 | ^~ 2021-07-14T07:18:53,074 Basics/NormalAtoms.cpp:514:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:53,074 514 | if (pos.capacity() < nAtoms + nGhosts) 2021-07-14T07:18:53,074 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:53,078 Basics/NormalAtoms.cpp:520:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T07:18:53,079 520 | if (pos.capacity() < nAtoms) 2021-07-14T07:18:53,079 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:18:53,079 In file included from Basics/AsapPython.h:44, 2021-07-14T07:18:53,079 from Basics/NormalAtoms.cpp:27: 2021-07-14T07:18:53,079 Basics/NormalAtoms.cpp:523:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T07:18:53,080 523 | ASSERT(pos.size() == nAtoms); 2021-07-14T07:18:53,080 | ~~~~~~~~~~~^~~~~~~~~ 2021-07-14T07:18:53,080 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:53,080 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:53,080 | ^~ 2021-07-14T07:18:53,080 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T07:18:53,081 Basics/NormalAtoms.cpp:535:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:53,081 535 | ASSERT(positions.size() >= n); 2021-07-14T07:18:53,081 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T07:18:53,081 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:18:53,081 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:18:53,081 | ^~ 2021-07-14T07:18:53,081 Basics/NormalAtoms.cpp:537:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:18:53,082 537 | if (pos.capacity() < n) 2021-07-14T07:18:53,082 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T07:18:54,600 In file included from /usr/include/c++/10/vector:72, 2021-07-14T07:18:54,601 from Basics/AtomsBasis.h:33, 2021-07-14T07:18:54,601 from Basics/NormalAtoms.h:33, 2021-07-14T07:18:54,601 from Basics/NormalAtoms.cpp:29: 2021-07-14T07:18:54,601 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T07:18:54,601 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:18:54,601 721 | vector<_Tp, _Alloc>:: 2021-07-14T07:18:54,602 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:54,602 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:54,602 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:55,371 In file included from /usr/include/c++/10/vector:67, 2021-07-14T07:18:55,371 from Basics/AtomsBasis.h:33, 2021-07-14T07:18:55,371 from Basics/NormalAtoms.h:33, 2021-07-14T07:18:55,371 from Basics/NormalAtoms.cpp:29: 2021-07-14T07:18:55,371 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T07:18:55,371 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:18:55,372 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T07:18:55,372 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:55,372 1666 | std::__iterator_category(__first)); 2021-07-14T07:18:55,372 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:55,372 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:55,372 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:18:55,372 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T07:18:55,372 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:55,373 1666 | std::__iterator_category(__first)); 2021-07-14T07:18:55,373 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:18:55,373 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:18:56,393 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/RandomNumbers.cpp -o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o 2021-07-14T07:18:58,217 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Timing.cpp -o build/temp.linux-armv7l-3.9/Basics/Timing.o 2021-07-14T07:18:59,867 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Vec.cpp -o build/temp.linux-armv7l-3.9/Basics/Vec.o 2021-07-14T07:19:00,957 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/VelocityVerlet.cpp -o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o 2021-07-14T07:19:03,317 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/BrennerPotential.cpp -o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o 2021-07-14T07:19:06,524 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/bcuint.cpp -o build/temp.linux-armv7l-3.9/Brenner/bcuint.o 2021-07-14T07:19:08,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/caguts.cpp -o build/temp.linux-armv7l-3.9/Brenner/caguts.o 2021-07-14T07:19:11,812 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/expand.cpp -o build/temp.linux-armv7l-3.9/Brenner/expand.o 2021-07-14T07:19:13,032 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/inter2d_iv.cpp -o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o 2021-07-14T07:19:13,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/mtable.cpp -o build/temp.linux-armv7l-3.9/Brenner/mtable.o 2021-07-14T07:19:15,594 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/pibond.cpp -o build/temp.linux-armv7l-3.9/Brenner/pibond.o 2021-07-14T07:19:19,984 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radic.cpp -o build/temp.linux-armv7l-3.9/Brenner/radic.o 2021-07-14T07:19:22,386 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radicdata.cpp -o build/temp.linux-armv7l-3.9/Brenner/radicdata.o 2021-07-14T07:19:22,864 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/sili_germ.cpp -o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o 2021-07-14T07:19:25,700 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/spgch.cpp -o build/temp.linux-armv7l-3.9/Brenner/spgch.o 2021-07-14T07:19:27,664 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/AsapSerial.cpp -o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o 2021-07-14T07:19:29,477 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/DynamicsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o 2021-07-14T07:19:30,976 In file included from Basics/AsapPython.h:44, 2021-07-14T07:19:30,976 from Interface/DynamicsInterface.h:29, 2021-07-14T07:19:30,976 from Interface/DynamicsInterface.cpp:26: 2021-07-14T07:19:30,977 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T07:19:30,977 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:30,977 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T07:19:30,977 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:30,977 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:30,977 | ^~ 2021-07-14T07:19:30,978 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T07:19:30,978 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:30,978 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T07:19:30,978 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:30,979 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:30,979 | ^~ 2021-07-14T07:19:30,986 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T07:19:30,986 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:30,986 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T07:19:30,986 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:30,987 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:30,987 | ^~ 2021-07-14T07:19:30,988 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T07:19:30,988 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:30,988 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T07:19:30,988 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:30,988 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:30,989 | ^~ 2021-07-14T07:19:30,998 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T07:19:30,998 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:30,999 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T07:19:30,999 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:30,999 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:30,999 | ^~ 2021-07-14T07:19:31,004 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_VelocityVerletInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:31,004 Interface/DynamicsInterface.cpp:78:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,004 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T07:19:31,005 | ^~~~~~~ 2021-07-14T07:19:31,005 Interface/DynamicsInterface.cpp:78:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,005 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T07:19:31,005 | ^~~~~~ 2021-07-14T07:19:31,005 Interface/DynamicsInterface.cpp:78:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,005 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T07:19:31,005 | ^~~~~~~~~~ 2021-07-14T07:19:31,006 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_LangevinInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:31,006 Interface/DynamicsInterface.cpp:116:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,006 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T07:19:31,006 | ^~~~~~~ 2021-07-14T07:19:31,007 Interface/DynamicsInterface.cpp:116:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,007 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T07:19:31,007 | ^~~~~~ 2021-07-14T07:19:31,007 Interface/DynamicsInterface.cpp:116:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,007 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T07:19:31,007 | ^~~~~~~~~~ 2021-07-14T07:19:31,007 Interface/DynamicsInterface.cpp:116:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,008 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T07:19:31,008 | ^~~~~~~ 2021-07-14T07:19:31,008 Interface/DynamicsInterface.cpp:116:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,008 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T07:19:31,008 | ^~~~~~~ 2021-07-14T07:19:31,008 Interface/DynamicsInterface.cpp:116:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,008 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T07:19:31,009 | ^~~~ 2021-07-14T07:19:31,009 Interface/DynamicsInterface.cpp:116:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,009 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T07:19:31,009 | ^~~~ 2021-07-14T07:19:31,009 Interface/DynamicsInterface.cpp:116:87: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,009 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T07:19:31,009 | ^~~~~~~ 2021-07-14T07:19:31,010 Interface/DynamicsInterface.cpp:116:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,010 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T07:19:31,010 | ^~~~~~ 2021-07-14T07:19:31,010 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DynamicsRun(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:31,010 Interface/DynamicsInterface.cpp:162:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,010 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T07:19:31,010 | ^~~~~~~ 2021-07-14T07:19:31,011 Interface/DynamicsInterface.cpp:162:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,011 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T07:19:31,011 | ^~~~~~~~~~~ 2021-07-14T07:19:31,011 Interface/DynamicsInterface.cpp:162:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,011 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T07:19:31,011 | ^~~~~ 2021-07-14T07:19:31,011 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetScalarConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:31,011 Interface/DynamicsInterface.cpp:190:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,012 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,012 | ^~~~~~ 2021-07-14T07:19:31,012 Interface/DynamicsInterface.cpp:190:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,012 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,012 | ^~~~ 2021-07-14T07:19:31,012 Interface/DynamicsInterface.cpp:190:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,012 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,013 | ^~~~ 2021-07-14T07:19:31,013 Interface/DynamicsInterface.cpp:190:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,013 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,013 | ^~~~~~~ 2021-07-14T07:19:31,013 Interface/DynamicsInterface.cpp:190:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,013 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,013 | ^~~~~~ 2021-07-14T07:19:31,014 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetVectorConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:31,014 Interface/DynamicsInterface.cpp:214:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,014 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,014 | ^~~~~~ 2021-07-14T07:19:31,014 Interface/DynamicsInterface.cpp:214:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,014 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,014 | ^~~~ 2021-07-14T07:19:31,015 Interface/DynamicsInterface.cpp:214:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,015 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,015 | ^~~~ 2021-07-14T07:19:31,015 Interface/DynamicsInterface.cpp:214:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,015 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,015 | ^~~~~~~ 2021-07-14T07:19:31,016 Interface/DynamicsInterface.cpp:214:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,016 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T07:19:31,016 | ^~~~~~ 2021-07-14T07:19:31,016 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvGetRandom(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:31,016 Interface/DynamicsInterface.cpp:251:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:31,016 251 | static char *kwlist[] = {"gaussian", NULL}; 2021-07-14T07:19:31,017 | ^~~~~~~~~~ 2021-07-14T07:19:31,733 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o 2021-07-14T07:19:33,266 In file included from Basics/AsapPython.h:44, 2021-07-14T07:19:33,266 from Interface/EMTParameterProviderInterface.cpp:28: 2021-07-14T07:19:33,266 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T07:19:33,267 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:33,267 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T07:19:33,267 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:33,267 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:33,267 | ^~ 2021-07-14T07:19:33,276 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T07:19:33,277 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:33,277 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T07:19:33,277 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:33,277 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:33,277 | ^~ 2021-07-14T07:19:33,285 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T07:19:33,286 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:33,286 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T07:19:33,286 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:33,286 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:33,286 | ^~ 2021-07-14T07:19:33,296 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T07:19:33,296 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:33,296 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T07:19:33,297 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:33,297 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:33,297 | ^~ 2021-07-14T07:19:33,306 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T07:19:33,307 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:33,307 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T07:19:33,307 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:33,307 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:33,307 | ^~ 2021-07-14T07:19:33,713 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ExceptionInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o 2021-07-14T07:19:35,172 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/NeighborLocatorInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o 2021-07-14T07:19:36,659 In file included from Basics/AsapPython.h:44, 2021-07-14T07:19:36,659 from Interface/NeighborLocatorInterface.cpp:27: 2021-07-14T07:19:36,659 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T07:19:36,659 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:36,660 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T07:19:36,660 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:36,660 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:36,660 | ^~ 2021-07-14T07:19:36,669 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T07:19:36,670 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:36,670 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T07:19:36,670 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:36,670 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:36,670 | ^~ 2021-07-14T07:19:36,678 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T07:19:36,678 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:36,678 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T07:19:36,679 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:36,679 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:36,679 | ^~ 2021-07-14T07:19:36,689 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T07:19:36,689 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:36,689 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T07:19:36,690 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:36,690 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:36,690 | ^~ 2021-07-14T07:19:36,699 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T07:19:36,700 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:36,700 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T07:19:36,700 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:36,700 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:36,700 | ^~ 2021-07-14T07:19:36,900 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborList_Py(PyObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:36,900 Interface/NeighborLocatorInterface.cpp:166:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:36,900 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T07:19:36,901 | ^~~~~~ 2021-07-14T07:19:36,901 Interface/NeighborLocatorInterface.cpp:166:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:36,901 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T07:19:36,901 | ^~~~~~~ 2021-07-14T07:19:36,901 Interface/NeighborLocatorInterface.cpp:166:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:36,901 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T07:19:36,902 | ^~~~~~~~~~~~~ 2021-07-14T07:19:36,902 Interface/NeighborLocatorInterface.cpp:166:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:36,902 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T07:19:36,902 | ^~~~~~ 2021-07-14T07:19:36,903 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborCellLocator_Serial(PyObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:36,903 Interface/NeighborLocatorInterface.cpp:218:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:36,903 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T07:19:36,903 | ^~~~~~ 2021-07-14T07:19:36,904 Interface/NeighborLocatorInterface.cpp:218:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:36,904 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T07:19:36,904 | ^~~~~~~ 2021-07-14T07:19:36,904 Interface/NeighborLocatorInterface.cpp:218:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:36,904 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T07:19:36,904 | ^~~~~~~~~~~~~ 2021-07-14T07:19:36,937 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNB(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:36,938 Interface/NeighborLocatorInterface.cpp:395:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:36,938 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T07:19:36,938 | ^~~ 2021-07-14T07:19:36,938 Interface/NeighborLocatorInterface.cpp:395:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:36,938 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T07:19:36,938 | ^~~~~~ 2021-07-14T07:19:38,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/OpenMPInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o 2021-07-14T07:19:40,206 Interface/OpenMPInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_set_num_threads(PyObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:40,206 Interface/OpenMPInterface.cpp:82:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:40,206 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T07:19:40,206 | ^~~ 2021-07-14T07:19:40,206 Interface/OpenMPInterface.cpp:82:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:40,207 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T07:19:40,207 | ^~~~~~~~~~~~ 2021-07-14T07:19:40,447 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PTMInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o 2021-07-14T07:19:42,055 Interface/PTMInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_PTMall(PyObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:42,056 Interface/PTMInterface.cpp:99:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:42,056 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T07:19:42,056 | ^~~~~~~ 2021-07-14T07:19:42,056 Interface/PTMInterface.cpp:99:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:42,056 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T07:19:42,057 | ^~~~~~~~ 2021-07-14T07:19:42,057 Interface/PTMInterface.cpp:99:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:42,057 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T07:19:42,057 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:19:42,057 Interface/PTMInterface.cpp:100:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:42,058 100 | "calculate_strains", "quick", 2021-07-14T07:19:42,058 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:19:42,058 Interface/PTMInterface.cpp:100:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:42,058 100 | "calculate_strains", "quick", 2021-07-14T07:19:42,058 | ^~~~~~~ 2021-07-14T07:19:42,058 Interface/PTMInterface.cpp:101:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:42,059 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T07:19:42,059 | ^~~~~~~~~~~~~~~ 2021-07-14T07:19:42,059 Interface/PTMInterface.cpp:101:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:42,059 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T07:19:42,059 | ^~~~~~~~~~~~~~~~~ 2021-07-14T07:19:42,085 In file included from /usr/include/python3.9/Python.h:61, 2021-07-14T07:19:42,085 from Basics/AsapPython.h:38, 2021-07-14T07:19:42,085 from Interface/PTMInterface.h:30, 2021-07-14T07:19:42,085 from Interface/PTMInterface.cpp:1: 2021-07-14T07:19:42,085 Interface/PTMInterface.cpp:303:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:19:42,085 303 | assert(m < indices.size()); 2021-07-14T07:19:42,086 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T07:19:42,086 Interface/PTMInterface.cpp:305:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:19:42,086 305 | assert(idx >= 0 && idx < indices.size()); 2021-07-14T07:19:42,087 | ~~~~^~~~~~~~~~~~~~~~ 2021-07-14T07:19:42,309 Interface/PTMInterface.cpp: At global scope: 2021-07-14T07:19:42,309 Interface/PTMInterface.cpp:11:18: warning: ‘PyObject* error(PyObject*, char*)’ defined but not used [-Wunused-function] 2021-07-14T07:19:42,309 11 | static PyObject* error(PyObject* type, char* msg) 2021-07-14T07:19:42,309 | ^~~~~ 2021-07-14T07:19:43,902 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PotentialInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o 2021-07-14T07:19:45,403 In file included from Basics/AsapPython.h:44, 2021-07-14T07:19:45,403 from Interface/PotentialInterface.cpp:29: 2021-07-14T07:19:45,403 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T07:19:45,403 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:45,404 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T07:19:45,404 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:45,404 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:45,404 | ^~ 2021-07-14T07:19:45,413 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T07:19:45,414 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:45,414 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T07:19:45,414 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:45,414 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:45,414 | ^~ 2021-07-14T07:19:45,422 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T07:19:45,422 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:45,423 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T07:19:45,423 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:45,423 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:45,423 | ^~ 2021-07-14T07:19:45,433 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T07:19:45,433 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:45,434 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T07:19:45,434 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:45,434 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:45,434 | ^~ 2021-07-14T07:19:45,443 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T07:19:45,444 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:45,444 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T07:19:45,444 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:45,444 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:45,444 | ^~ 2021-07-14T07:19:45,701 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,701 Interface/PotentialInterface.cpp:201:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,701 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T07:19:45,701 | ^~~~~~ 2021-07-14T07:19:45,701 Interface/PotentialInterface.cpp:201:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,702 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T07:19:45,702 | ^~~~~~~~~ 2021-07-14T07:19:45,703 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMT2013Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,703 Interface/PotentialInterface.cpp:234:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,703 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T07:19:45,704 | ^~~~~~~~~~~~ 2021-07-14T07:19:45,704 Interface/PotentialInterface.cpp:234:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,704 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T07:19:45,704 | ^~~~~~~~~~~~~~~~~ 2021-07-14T07:19:45,704 Interface/PotentialInterface.cpp:234:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,704 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T07:19:45,704 | ^~~~~~~~~ 2021-07-14T07:19:45,705 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MonteCarloEMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,705 Interface/PotentialInterface.cpp:270:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,705 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T07:19:45,706 | ^~~~~~ 2021-07-14T07:19:45,706 Interface/PotentialInterface.cpp:270:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,706 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T07:19:45,706 | ^~~~~~~~~ 2021-07-14T07:19:45,707 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RGLInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,707 Interface/PotentialInterface.cpp:291:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,707 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T07:19:45,707 | ^~~~~~~~~~ 2021-07-14T07:19:45,707 Interface/PotentialInterface.cpp:291:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,708 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T07:19:45,708 | ^~~ 2021-07-14T07:19:45,708 Interface/PotentialInterface.cpp:291:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,708 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T07:19:45,708 | ^~~ 2021-07-14T07:19:45,708 Interface/PotentialInterface.cpp:291:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,708 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T07:19:45,709 | ^~~ 2021-07-14T07:19:45,709 Interface/PotentialInterface.cpp:291:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,709 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T07:19:45,709 | ^~~~~~ 2021-07-14T07:19:45,709 Interface/PotentialInterface.cpp:291:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,709 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T07:19:45,709 | ^~~~ 2021-07-14T07:19:45,710 Interface/PotentialInterface.cpp:292:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,710 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T07:19:45,710 | ^~~~ 2021-07-14T07:19:45,710 Interface/PotentialInterface.cpp:292:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,710 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T07:19:45,710 | ^~~~ 2021-07-14T07:19:45,710 Interface/PotentialInterface.cpp:292:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,710 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T07:19:45,711 | ^~~~ 2021-07-14T07:19:45,711 Interface/PotentialInterface.cpp:292:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,711 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T07:19:45,711 | ^~~~ 2021-07-14T07:19:45,711 Interface/PotentialInterface.cpp:292:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,711 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T07:19:45,711 | ^~~~ 2021-07-14T07:19:45,712 Interface/PotentialInterface.cpp:292:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,712 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T07:19:45,712 | ^~~~ 2021-07-14T07:19:45,712 Interface/PotentialInterface.cpp:293:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,712 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T07:19:45,712 | ^~~~~ 2021-07-14T07:19:45,712 Interface/PotentialInterface.cpp:293:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,712 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T07:19:45,713 | ^~~~~ 2021-07-14T07:19:45,713 Interface/PotentialInterface.cpp:293:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,713 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T07:19:45,713 | ^~~~~~~~~ 2021-07-14T07:19:45,715 Interface/PotentialInterface.cpp: In function ‘int PyAsap_LennardJonesInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,715 Interface/PotentialInterface.cpp:355:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,715 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T07:19:45,715 | ^~~~~~~~~~~~~ 2021-07-14T07:19:45,715 Interface/PotentialInterface.cpp:355:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,716 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T07:19:45,716 | ^~~~~~~~~~ 2021-07-14T07:19:45,716 Interface/PotentialInterface.cpp:355:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,716 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T07:19:45,716 | ^~~~~~~~~ 2021-07-14T07:19:45,716 Interface/PotentialInterface.cpp:355:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,717 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T07:19:45,717 | ^~~~~~~ 2021-07-14T07:19:45,717 Interface/PotentialInterface.cpp:356:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,717 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T07:19:45,717 | ^~~~~~~~ 2021-07-14T07:19:45,717 Interface/PotentialInterface.cpp:356:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,717 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T07:19:45,718 | ^~~~~~ 2021-07-14T07:19:45,718 Interface/PotentialInterface.cpp:356:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,718 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T07:19:45,718 | ^~~~~~~~~~ 2021-07-14T07:19:45,718 Interface/PotentialInterface.cpp:356:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,718 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T07:19:45,718 | ^~~~~~~~~ 2021-07-14T07:19:45,721 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RahmanStillingerLembergInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,721 Interface/PotentialInterface.cpp:394:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,721 394 | static char *kwlist[] = {"numElements", 2021-07-14T07:19:45,721 | ^~~~~~~~~~~~~ 2021-07-14T07:19:45,722 Interface/PotentialInterface.cpp:395:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,722 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T07:19:45,722 | ^~~~ 2021-07-14T07:19:45,722 Interface/PotentialInterface.cpp:395:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,722 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T07:19:45,722 | ^~~~ 2021-07-14T07:19:45,722 Interface/PotentialInterface.cpp:395:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,722 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T07:19:45,723 | ^~~ 2021-07-14T07:19:45,723 Interface/PotentialInterface.cpp:395:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,723 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T07:19:45,723 | ^~~~ 2021-07-14T07:19:45,723 Interface/PotentialInterface.cpp:395:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,723 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T07:19:45,723 | ^~~~ 2021-07-14T07:19:45,724 Interface/PotentialInterface.cpp:395:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,724 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T07:19:45,724 | ^~~~ 2021-07-14T07:19:45,724 Interface/PotentialInterface.cpp:396:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,724 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T07:19:45,724 | ^~~~ 2021-07-14T07:19:45,724 Interface/PotentialInterface.cpp:396:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,724 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T07:19:45,724 | ^~~~ 2021-07-14T07:19:45,725 Interface/PotentialInterface.cpp:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,725 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T07:19:45,725 | ^~~~ 2021-07-14T07:19:45,725 Interface/PotentialInterface.cpp:396:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,725 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T07:19:45,725 | ^~~~ 2021-07-14T07:19:45,725 Interface/PotentialInterface.cpp:396:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,725 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T07:19:45,726 | ^~~~ 2021-07-14T07:19:45,726 Interface/PotentialInterface.cpp:396:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,726 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T07:19:45,726 | ^~~~ 2021-07-14T07:19:45,726 Interface/PotentialInterface.cpp:397:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,726 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T07:19:45,726 | ^~~~~~~~~~ 2021-07-14T07:19:45,726 Interface/PotentialInterface.cpp:397:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,726 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T07:19:45,727 | ^~~~~~~~ 2021-07-14T07:19:45,727 Interface/PotentialInterface.cpp:397:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,727 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T07:19:45,727 | ^~~~~~ 2021-07-14T07:19:45,727 Interface/PotentialInterface.cpp:397:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,727 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T07:19:45,728 | ^~~~~~~~~ 2021-07-14T07:19:45,728 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterfaceInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,728 Interface/PotentialInterface.cpp:500:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,728 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,728 | ^~~ 2021-07-14T07:19:45,728 Interface/PotentialInterface.cpp:500:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,728 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,728 | ^~~ 2021-07-14T07:19:45,729 Interface/PotentialInterface.cpp:500:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,729 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,729 | ^~~ 2021-07-14T07:19:45,729 Interface/PotentialInterface.cpp:500:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,729 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,729 | ^~~~ 2021-07-14T07:19:45,729 Interface/PotentialInterface.cpp:500:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,729 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,730 | ^~~~ 2021-07-14T07:19:45,730 Interface/PotentialInterface.cpp:500:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,730 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,730 | ^~~~~~~~~ 2021-07-14T07:19:45,730 Interface/PotentialInterface.cpp:501:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,730 501 | "q", "kappa", 2021-07-14T07:19:45,730 | ^~~ 2021-07-14T07:19:45,730 Interface/PotentialInterface.cpp:501:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,730 501 | "q", "kappa", 2021-07-14T07:19:45,731 | ^~~~~~~ 2021-07-14T07:19:45,731 Interface/PotentialInterface.cpp:502:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,731 502 | "D", "alpha", "R0", 2021-07-14T07:19:45,731 | ^~~ 2021-07-14T07:19:45,731 Interface/PotentialInterface.cpp:502:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,731 502 | "D", "alpha", "R0", 2021-07-14T07:19:45,731 | ^~~~~~~ 2021-07-14T07:19:45,731 Interface/PotentialInterface.cpp:502:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,732 502 | "D", "alpha", "R0", 2021-07-14T07:19:45,732 | ^~~~ 2021-07-14T07:19:45,732 Interface/PotentialInterface.cpp:503:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,732 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T07:19:45,732 | ^~~ 2021-07-14T07:19:45,732 Interface/PotentialInterface.cpp:503:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,732 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T07:19:45,732 | ^~~ 2021-07-14T07:19:45,733 Interface/PotentialInterface.cpp:503:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,733 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T07:19:45,733 | ^~~~ 2021-07-14T07:19:45,733 Interface/PotentialInterface.cpp:503:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,733 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T07:19:45,733 | ^~~~~~~~~~~ 2021-07-14T07:19:45,733 Interface/PotentialInterface.cpp:504:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,733 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T07:19:45,734 | ^~~~~~ 2021-07-14T07:19:45,734 Interface/PotentialInterface.cpp:504:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,734 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T07:19:45,734 | ^~~~~~~ 2021-07-14T07:19:45,734 Interface/PotentialInterface.cpp:504:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,734 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T07:19:45,734 | ^~~~~~~~~~~~~~~ 2021-07-14T07:19:45,734 Interface/PotentialInterface.cpp:504:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,734 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T07:19:45,735 | ^~~~~~~~~ 2021-07-14T07:19:45,735 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterface2Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,735 Interface/PotentialInterface.cpp:565:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,735 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,735 | ^~~ 2021-07-14T07:19:45,735 Interface/PotentialInterface.cpp:565:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,735 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,736 | ^~~ 2021-07-14T07:19:45,736 Interface/PotentialInterface.cpp:565:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,736 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,736 | ^~~ 2021-07-14T07:19:45,736 Interface/PotentialInterface.cpp:565:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,736 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,736 | ^~~~ 2021-07-14T07:19:45,736 Interface/PotentialInterface.cpp:565:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,737 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,737 | ^~~~ 2021-07-14T07:19:45,737 Interface/PotentialInterface.cpp:565:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,737 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T07:19:45,737 | ^~~~~~~~~ 2021-07-14T07:19:45,737 Interface/PotentialInterface.cpp:566:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,737 566 | "q", "kappa", 2021-07-14T07:19:45,738 | ^~~ 2021-07-14T07:19:45,738 Interface/PotentialInterface.cpp:566:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,738 566 | "q", "kappa", 2021-07-14T07:19:45,738 | ^~~~~~~ 2021-07-14T07:19:45,738 Interface/PotentialInterface.cpp:567:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,738 567 | "D", "alpha", "R0", 2021-07-14T07:19:45,738 | ^~~ 2021-07-14T07:19:45,738 Interface/PotentialInterface.cpp:567:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,739 567 | "D", "alpha", "R0", 2021-07-14T07:19:45,739 | ^~~~~~~ 2021-07-14T07:19:45,739 Interface/PotentialInterface.cpp:567:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,739 567 | "D", "alpha", "R0", 2021-07-14T07:19:45,739 | ^~~~ 2021-07-14T07:19:45,739 Interface/PotentialInterface.cpp:568:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,739 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T07:19:45,740 | ^~~ 2021-07-14T07:19:45,740 Interface/PotentialInterface.cpp:568:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,740 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T07:19:45,740 | ^~~ 2021-07-14T07:19:45,740 Interface/PotentialInterface.cpp:568:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,740 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T07:19:45,740 | ^~~~ 2021-07-14T07:19:45,740 Interface/PotentialInterface.cpp:568:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,741 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T07:19:45,741 | ^~~~~~~~~~~ 2021-07-14T07:19:45,741 Interface/PotentialInterface.cpp:569:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,741 569 | "E", "rho0", "l0", 2021-07-14T07:19:45,741 | ^~~ 2021-07-14T07:19:45,741 Interface/PotentialInterface.cpp:569:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,741 569 | "E", "rho0", "l0", 2021-07-14T07:19:45,742 | ^~~~~~ 2021-07-14T07:19:45,742 Interface/PotentialInterface.cpp:569:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,742 569 | "E", "rho0", "l0", 2021-07-14T07:19:45,742 | ^~~~ 2021-07-14T07:19:45,742 Interface/PotentialInterface.cpp:570:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,742 570 | "B", "C", 2021-07-14T07:19:45,742 | ^~~ 2021-07-14T07:19:45,742 Interface/PotentialInterface.cpp:570:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,743 570 | "B", "C", 2021-07-14T07:19:45,743 | ^~~ 2021-07-14T07:19:45,743 Interface/PotentialInterface.cpp:571:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,743 571 | "interface_cut", "verbose", NULL}; 2021-07-14T07:19:45,743 | ^~~~~~~~~~~~~~~ 2021-07-14T07:19:45,743 Interface/PotentialInterface.cpp:571:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,743 571 | "interface_cut", "verbose", NULL}; 2021-07-14T07:19:45,744 | ^~~~~~~~~ 2021-07-14T07:19:45,744 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MorseInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,744 Interface/PotentialInterface.cpp:647:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,744 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T07:19:45,744 | ^~~~~~~~~~ 2021-07-14T07:19:45,744 Interface/PotentialInterface.cpp:647:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,744 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T07:19:45,744 | ^~~~~~~~~ 2021-07-14T07:19:45,745 Interface/PotentialInterface.cpp:647:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,745 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T07:19:45,745 | ^~~~~~~ 2021-07-14T07:19:45,745 Interface/PotentialInterface.cpp:647:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,745 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T07:19:45,745 | ^~~~~~ 2021-07-14T07:19:45,745 Interface/PotentialInterface.cpp:648:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,746 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T07:19:45,746 | ^~~~~~ 2021-07-14T07:19:45,746 Interface/PotentialInterface.cpp:648:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,746 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T07:19:45,746 | ^~~~~~~~~~ 2021-07-14T07:19:45,746 Interface/PotentialInterface.cpp:648:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,746 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T07:19:45,747 | ^~~~~~~~~ 2021-07-14T07:19:45,747 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetPotentialEnergy(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:45,747 Interface/PotentialInterface.cpp:711:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,747 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T07:19:45,747 | ^~~~~~~ 2021-07-14T07:19:45,747 Interface/PotentialInterface.cpp:711:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:45,747 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T07:19:45,748 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T07:19:45,753 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetExtra(AsapNS::PyAsap_PotentialObject*, PyObject*)’: 2021-07-14T07:19:45,754 Interface/PotentialInterface.cpp:863:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:19:45,754 863 | for (int i = 0; i < s1.size(); i++) 2021-07-14T07:19:45,754 | ~~^~~~~~~~~~~ 2021-07-14T07:19:48,397 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PythonConversions.cpp -o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o 2021-07-14T07:19:49,888 In file included from Basics/AsapPython.h:44, 2021-07-14T07:19:49,888 from Interface/PythonConversions.h:30, 2021-07-14T07:19:49,888 from Interface/PythonConversions.cpp:24: 2021-07-14T07:19:49,888 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T07:19:49,889 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:49,889 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T07:19:49,889 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:49,889 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:49,889 | ^~ 2021-07-14T07:19:49,898 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T07:19:49,899 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:49,899 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T07:19:49,899 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:49,899 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:49,899 | ^~ 2021-07-14T07:19:49,907 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T07:19:49,907 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:49,907 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T07:19:49,908 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:49,908 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:49,908 | ^~ 2021-07-14T07:19:49,918 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T07:19:49,918 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:49,918 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T07:19:49,918 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:49,919 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:49,919 | ^~ 2021-07-14T07:19:49,928 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T07:19:49,929 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:49,929 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T07:19:49,929 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:49,929 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:49,929 | ^~ 2021-07-14T07:19:50,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/RDFInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o 2021-07-14T07:19:52,378 In file included from Basics/AsapPython.h:44, 2021-07-14T07:19:52,378 from Interface/RDFInterface.h:30, 2021-07-14T07:19:52,378 from Interface/RDFInterface.cpp:27: 2021-07-14T07:19:52,378 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T07:19:52,379 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:52,379 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T07:19:52,379 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:52,379 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:52,379 | ^~ 2021-07-14T07:19:52,388 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T07:19:52,389 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:52,389 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T07:19:52,389 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:52,389 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:52,389 | ^~ 2021-07-14T07:19:52,397 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T07:19:52,397 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:52,397 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T07:19:52,397 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:52,397 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:52,398 | ^~ 2021-07-14T07:19:52,408 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T07:19:52,408 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:52,408 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T07:19:52,408 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:52,408 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:52,409 | ^~ 2021-07-14T07:19:52,418 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T07:19:52,419 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:52,419 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T07:19:52,419 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:52,419 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:52,419 | ^~ 2021-07-14T07:19:54,353 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ToolsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o 2021-07-14T07:19:55,817 In file included from Basics/AsapPython.h:44, 2021-07-14T07:19:55,818 from Interface/ToolsInterface.cpp:27: 2021-07-14T07:19:55,818 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T07:19:55,818 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:55,818 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T07:19:55,818 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:55,818 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:55,818 | ^~ 2021-07-14T07:19:55,828 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T07:19:55,828 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:55,828 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T07:19:55,828 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:55,828 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:55,829 | ^~ 2021-07-14T07:19:55,836 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T07:19:55,837 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:55,837 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T07:19:55,837 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:55,837 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:55,837 | ^~ 2021-07-14T07:19:55,847 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T07:19:55,847 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:55,848 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T07:19:55,848 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:55,848 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:55,848 | ^~ 2021-07-14T07:19:55,858 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T07:19:55,858 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:19:55,858 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T07:19:55,858 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:19:55,858 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:19:55,858 | ^~ 2021-07-14T07:19:56,052 Interface/ToolsInterface.cpp: In function ‘int AsapNS::PyAsap_FullCNAInit(AsapNS::PyAsap_FullCNAObject*, PyObject*, PyObject*)’: 2021-07-14T07:19:56,052 Interface/ToolsInterface.cpp:92:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:56,052 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T07:19:56,053 | ^~~~~~~ 2021-07-14T07:19:56,053 Interface/ToolsInterface.cpp:92:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:19:56,053 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T07:19:56,053 | ^~~~~~~~ 2021-07-14T07:19:56,777 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/alloy_types.cpp -o build/temp.linux-armv7l-3.9/PTM/alloy_types.o 2021-07-14T07:19:58,401 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/canonical.cpp -o build/temp.linux-armv7l-3.9/PTM/canonical.o 2021-07-14T07:20:00,254 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/convex_hull_incremental.cpp -o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o 2021-07-14T07:20:02,337 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/deformation_gradient.cpp -o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o 2021-07-14T07:20:03,901 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/graph_data.cpp -o build/temp.linux-armv7l-3.9/PTM/graph_data.o 2021-07-14T07:20:05,547 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/index_ptm.cpp -o build/temp.linux-armv7l-3.9/PTM/index_ptm.o 2021-07-14T07:20:07,885 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/initialize_data.cpp -o build/temp.linux-armv7l-3.9/PTM/initialize_data.o 2021-07-14T07:20:09,586 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/neighbour_ordering.cpp -o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o 2021-07-14T07:20:10,982 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/normalize_vertices.cpp -o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o 2021-07-14T07:20:11,297 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/polar.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o 2021-07-14T07:20:12,196 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/quat.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o 2021-07-14T07:20:12,959 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/voronoi/cell.cpp -o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o 2021-07-14T07:20:16,388 In file included from /usr/include/c++/10/vector:72, 2021-07-14T07:20:16,388 from PTM/voronoi/cell.hpp:15, 2021-07-14T07:20:16,389 from PTM/voronoi/cell.cpp:16: 2021-07-14T07:20:16,389 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T07:20:16,389 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T07:20:16,389 426 | vector<_Tp, _Alloc>:: 2021-07-14T07:20:16,389 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:16,450 /usr/include/c++/10/bits/vector.tcc: In member function ‘void voro::voronoicell_base::face_areas(std::vector&)’: 2021-07-14T07:20:16,450 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:20:16,450 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T07:20:16,450 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:16,706 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT.o 2021-07-14T07:20:18,585 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::SetAtoms(PyObject*, AsapNS::Atoms*)’: 2021-07-14T07:20:18,586 Potentials/EMT.cpp:193:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:18,586 193 | for (int i = 0; i < parameters.size(); i++) 2021-07-14T07:20:18,586 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:18,600 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::Allocate()’: 2021-07-14T07:20:18,601 Potentials/EMT.cpp:242:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:18,601 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T07:20:18,601 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-14T07:20:18,601 Potentials/EMT.cpp:242:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:18,601 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T07:20:18,601 | ~~~~~~~^~~~~~~~~~~~~ 2021-07-14T07:20:18,602 Potentials/EMT.cpp:251:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:18,602 251 | if (force.capacity() < nSize) 2021-07-14T07:20:18,602 | ~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T07:20:18,602 Potentials/EMT.cpp:262:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:18,602 262 | if (Eas.capacity() < nAtoms) 2021-07-14T07:20:18,602 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:20:18,603 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::AllocateStress()’: 2021-07-14T07:20:18,604 Potentials/EMT.cpp:302:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:18,604 302 | if (ghostatoms && (virials.capacity() < nSize)) 2021-07-14T07:20:18,604 | ~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T07:20:18,607 In file included from Basics/AsapPython.h:44, 2021-07-14T07:20:18,607 from Potentials/EMT.h:34, 2021-07-14T07:20:18,607 from Potentials/EMT.cpp:34: 2021-07-14T07:20:18,607 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::InitParameters()’: 2021-07-14T07:20:18,607 Potentials/EMT.cpp:324:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:18,608 324 | ASSERT(nelements == elements_set.size()); 2021-07-14T07:20:18,608 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:18,608 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:18,608 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:18,608 | ^~ 2021-07-14T07:20:18,624 Potentials/EMT.cpp: In member function ‘virtual const std::vector& AsapNS::EMT::GetPotentialEnergies(PyObject*)’: 2021-07-14T07:20:18,624 Potentials/EMT.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:18,625 538 | ASSERT(Epot.size() == nAtoms); 2021-07-14T07:20:18,625 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T07:20:18,625 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:18,625 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:18,625 | ^~ 2021-07-14T07:20:18,660 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T07:20:18,661 Potentials/EMT.cpp:1259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:18,661 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T07:20:18,661 | ~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T07:20:18,661 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:18,661 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:18,661 | ^~ 2021-07-14T07:20:18,662 Potentials/EMT.cpp:1259:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:18,662 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T07:20:18,662 | ~~~~~~~^~~~~~~~~~~~ 2021-07-14T07:20:18,662 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:18,662 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:18,662 | ^~ 2021-07-14T07:20:18,662 Potentials/EMT.cpp:1260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:18,663 1260 | nSize == dEds.size()); 2021-07-14T07:20:18,663 | ~~~~~~^~~~~~~~~~~~~~ 2021-07-14T07:20:18,663 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:18,663 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:18,663 | ^~ 2021-07-14T07:20:18,673 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergies()’: 2021-07-14T07:20:18,674 Potentials/EMT.cpp:1425:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:18,674 1425 | ASSERT(virials.size() == nSize); 2021-07-14T07:20:18,674 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:20:18,674 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:18,674 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:18,674 | ^~ 2021-07-14T07:20:18,683 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergiesSingle()’: 2021-07-14T07:20:18,683 Potentials/EMT.cpp:1544:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:18,683 1544 | ASSERT(this->force.size() >= nSize); 2021-07-14T07:20:18,683 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:20:18,683 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:18,684 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:18,684 | ^~ 2021-07-14T07:20:18,684 Potentials/EMT.cpp:1547:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:18,684 1547 | ASSERT(virials.size() == nSize); 2021-07-14T07:20:18,684 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:20:18,684 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:18,684 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:18,685 | ^~ 2021-07-14T07:20:25,339 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT2013.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o 2021-07-14T07:20:27,202 In file included from Basics/AsapPython.h:44, 2021-07-14T07:20:27,203 from Potentials/EMT.h:34, 2021-07-14T07:20:27,203 from Potentials/EMT2013.h:13, 2021-07-14T07:20:27,203 from Potentials/EMT2013.cpp:8: 2021-07-14T07:20:27,203 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::InitParameters()’: 2021-07-14T07:20:27,203 Potentials/EMT2013.cpp:105:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:27,204 105 | ASSERT(nelements == elements_set.size()); 2021-07-14T07:20:27,204 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:27,204 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:27,204 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:27,204 | ^~ 2021-07-14T07:20:27,240 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T07:20:27,240 Potentials/EMT2013.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:27,240 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T07:20:27,240 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:27,241 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:27,241 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:27,241 | ^~ 2021-07-14T07:20:27,241 Potentials/EMT2013.cpp:568:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:27,241 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T07:20:27,241 | ~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:27,241 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:27,242 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:27,242 | ^~ 2021-07-14T07:20:27,242 Potentials/EMT2013.cpp:569:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:27,242 569 | nSize == this->dEds.size()); 2021-07-14T07:20:27,242 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:27,242 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:27,242 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:27,242 | ^~ 2021-07-14T07:20:29,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o 2021-07-14T07:20:32,371 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o 2021-07-14T07:20:34,593 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o 2021-07-14T07:20:36,537 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/LennardJones.cpp -o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o 2021-07-14T07:20:38,400 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetVirials(PyObject*)’: 2021-07-14T07:20:38,401 Potentials/LennardJones.cpp:374:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:20:38,401 374 | if (nAtoms != virials.size()) 2021-07-14T07:20:38,401 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T07:20:38,407 In file included from Basics/AsapPython.h:44, 2021-07-14T07:20:38,407 from Potentials/LennardJones.cpp:43: 2021-07-14T07:20:38,407 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetForces(PyObject*)’: 2021-07-14T07:20:38,407 Potentials/LennardJones.cpp:484:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:38,408 484 | ASSERT(forces.size() == nSize); 2021-07-14T07:20:38,408 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:20:38,408 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:38,408 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:38,408 | ^~ 2021-07-14T07:20:38,411 Potentials/LennardJones.cpp: In member function ‘double AsapNS::LennardJones::CalculateEnergyAndEnergies()’: 2021-07-14T07:20:38,412 Potentials/LennardJones.cpp:580:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:38,412 580 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T07:20:38,412 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T07:20:38,412 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:38,412 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:38,412 | ^~ 2021-07-14T07:20:41,152 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o 2021-07-14T07:20:42,986 In file included from Basics/AsapPython.h:44, 2021-07-14T07:20:42,986 from Potentials/MetalOxideInterface.cpp:29: 2021-07-14T07:20:42,986 Potentials/MetalOxideInterface.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface::GetForces(PyObject*)’: 2021-07-14T07:20:42,986 Potentials/MetalOxideInterface.cpp:316:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:42,986 316 | ASSERT(forces.size() == nSize); 2021-07-14T07:20:42,986 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:20:42,987 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:42,987 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:42,987 | ^~ 2021-07-14T07:20:43,003 Potentials/MetalOxideInterface.cpp: In member function ‘double AsapNS::MetalOxideInterface::CalculateEnergyAndEnergies()’: 2021-07-14T07:20:43,003 Potentials/MetalOxideInterface.cpp:571:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:43,003 571 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T07:20:43,003 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T07:20:43,004 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:43,004 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:43,004 | ^~ 2021-07-14T07:20:46,588 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface2.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o 2021-07-14T07:20:48,451 In file included from Basics/AsapPython.h:44, 2021-07-14T07:20:48,452 from Potentials/MetalOxideInterface2.cpp:43: 2021-07-14T07:20:48,452 Potentials/MetalOxideInterface2.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface2::GetForces(PyObject*)’: 2021-07-14T07:20:48,452 Potentials/MetalOxideInterface2.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:48,452 330 | ASSERT(forces.size() == nSize); 2021-07-14T07:20:48,452 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:20:48,452 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:48,453 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:48,453 | ^~ 2021-07-14T07:20:48,467 Potentials/MetalOxideInterface2.cpp: In member function ‘double AsapNS::MetalOxideInterface2::CalculateEnergyAndEnergies()’: 2021-07-14T07:20:48,467 Potentials/MetalOxideInterface2.cpp:552:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:48,468 552 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T07:20:48,468 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T07:20:48,468 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:48,468 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:48,468 | ^~ 2021-07-14T07:20:52,217 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MonteCarloEMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o 2021-07-14T07:20:56,042 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Morse.cpp -o build/temp.linux-armv7l-3.9/Potentials/Morse.o 2021-07-14T07:20:57,869 In file included from Basics/AsapPython.h:44, 2021-07-14T07:20:57,869 from Potentials/Morse.cpp:43: 2021-07-14T07:20:57,869 Potentials/Morse.cpp: In member function ‘double AsapNS::Morse::CalculateEnergyAndEnergies()’: 2021-07-14T07:20:57,869 Potentials/Morse.cpp:472:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:20:57,869 472 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T07:20:57,870 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T07:20:57,870 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:20:57,870 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:20:57,870 | ^~ 2021-07-14T07:20:59,896 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T07:20:59,896 from Potentials/Morse.cpp:54: 2021-07-14T07:20:59,897 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T07:20:59,897 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:20:59,897 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-14T07:20:59,897 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:59,897 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:20:59,897 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:20:59,897 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:20:59,918 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-14T07:20:59,919 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:20:59,919 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-14T07:20:59,919 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:20:59,934 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T07:20:59,935 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:20:59,935 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-14T07:20:59,935 | ^~~~~~~~~~~~~~~~ 2021-07-14T07:20:59,935 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:20:59,964 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-14T07:20:59,964 from /usr/include/c++/10/algorithm:62, 2021-07-14T07:20:59,964 from Potentials/Morse.cpp:54: 2021-07-14T07:20:59,965 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T07:20:59,965 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:20:59,965 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-14T07:20:59,965 | ^~~~~~~~~~~~~ 2021-07-14T07:21:00,005 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T07:21:00,005 from Potentials/Morse.cpp:54: 2021-07-14T07:21:00,005 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T07:21:00,005 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,005 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-14T07:21:00,005 | ^~~~~~~~~~~~~ 2021-07-14T07:21:00,006 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,006 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,006 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,039 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T07:21:00,039 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,039 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-14T07:21:00,039 | ^~~~~~~~~~~~~~~~ 2021-07-14T07:21:00,040 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,040 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,040 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,040 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-14T07:21:00,040 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:00,040 1925 | __comp); 2021-07-14T07:21:00,040 | ~~~~~~~ 2021-07-14T07:21:00,041 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,041 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,041 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-14T07:21:00,041 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:00,041 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,041 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-14T07:21:00,041 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:00,080 /usr/include/c++/10/bits/stl_algo.h: In member function ‘double AsapNS::Morse::Add(std::vector&)’: 2021-07-14T07:21:00,080 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,080 1974 | std::__introsort_loop(__first, __last, 2021-07-14T07:21:00,080 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T07:21:00,080 1975 | std::__lg(__last - __first) * 2, 2021-07-14T07:21:00,081 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:00,081 1976 | __comp); 2021-07-14T07:21:00,081 | ~~~~~~~ 2021-07-14T07:21:00,081 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,081 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-14T07:21:00,081 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:00,081 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T07:21:00,081 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-14T07:21:00,081 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:00,475 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Potential.cpp -o build/temp.linux-armv7l-3.9/Potentials/Potential.o 2021-07-14T07:21:02,037 Potentials/Potential.cpp: In member function ‘virtual AsapNS::SymTensor AsapNS::Potential::GetVirial(PyObject*)’: 2021-07-14T07:21:02,037 Potentials/Potential.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:02,037 52 | for (int i = 0; i < virials.size(); i++) 2021-07-14T07:21:02,037 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T07:21:02,448 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RGL.cpp -o build/temp.linux-armv7l-3.9/Potentials/RGL.o 2021-07-14T07:21:04,286 Potentials/RGL.cpp: In member function ‘void AsapNS::RGL::Allocate()’: 2021-07-14T07:21:04,286 Potentials/RGL.cpp:127:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:04,286 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T07:21:04,287 | ~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T07:21:04,287 Potentials/RGL.cpp:127:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:04,287 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T07:21:04,287 | ~~~~~~~^~~~~~~~~~~~~~ 2021-07-14T07:21:07,050 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o 2021-07-14T07:21:08,874 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:08,875 from Potentials/RahmanStillingerLemberg.cpp:43: 2021-07-14T07:21:08,875 Potentials/RahmanStillingerLemberg.cpp: In member function ‘virtual const std::vector& AsapNS::RahmanStillingerLemberg::GetForces(PyObject*)’: 2021-07-14T07:21:08,875 Potentials/RahmanStillingerLemberg.cpp:355:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:08,875 355 | ASSERT(forces.size() == nSize); 2021-07-14T07:21:08,875 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T07:21:08,875 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:08,876 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:08,876 | ^~ 2021-07-14T07:21:08,883 Potentials/RahmanStillingerLemberg.cpp: In member function ‘double AsapNS::RahmanStillingerLemberg::CalculateEnergyAndEnergies()’: 2021-07-14T07:21:08,883 Potentials/RahmanStillingerLemberg.cpp:452:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:08,883 452 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T07:21:08,884 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T07:21:08,884 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:08,884 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:08,884 | ^~ 2021-07-14T07:21:11,769 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CNA.cpp -o build/temp.linux-armv7l-3.9/Tools/CNA.o 2021-07-14T07:21:13,438 Tools/CNA.cpp: In function ‘void AsapNS::CNA(PyObject*, double, std::vector&)’: 2021-07-14T07:21:13,438 Tools/CNA.cpp:54:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T07:21:13,438 54 | for (unsigned int a2 = 0; a2 < nTotal; a2++) 2021-07-14T07:21:13,438 | ~~~^~~~~~~~ 2021-07-14T07:21:13,444 Tools/CNA.cpp:62:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:21:13,444 62 | if (a1 < a2) 2021-07-14T07:21:13,444 | ~~~^~~~ 2021-07-14T07:21:13,445 Tools/CNA.cpp:82:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T07:21:13,445 82 | for (unsigned int j1 = 0; j1 < j2; j1++) 2021-07-14T07:21:13,445 | ~~~^~~~ 2021-07-14T07:21:14,499 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CoordinationNumbers.cpp -o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o 2021-07-14T07:21:16,749 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/FullCNA.cpp -o build/temp.linux-armv7l-3.9/Tools/FullCNA.o 2021-07-14T07:21:21,263 In file included from /usr/include/c++/10/map:60, 2021-07-14T07:21:21,263 from Tools/FullCNA.h:35, 2021-07-14T07:21:21,264 from Tools/FullCNA.cpp:24: 2021-07-14T07:21:21,264 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T07:21:21,264 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T07:21:21,264 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T07:21:21,264 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:21,651 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T07:21:21,652 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T07:21:21,652 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T07:21:21,652 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:21,697 In file included from /usr/include/c++/10/map:61, 2021-07-14T07:21:21,697 from Tools/FullCNA.h:35, 2021-07-14T07:21:21,698 from Tools/FullCNA.cpp:24: 2021-07-14T07:21:21,698 /usr/include/c++/10/bits/stl_map.h: In member function ‘void AsapNS::FullCNA::SetMultipleCutoffs(std::map, double>&)’: 2021-07-14T07:21:21,698 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T07:21:21,698 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T07:21:21,698 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:21,698 502 | std::tuple(__k), 2021-07-14T07:21:21,698 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:21,698 503 | std::tuple<>()); 2021-07-14T07:21:21,699 | ~~~~~~~~~~~~~~~ 2021-07-14T07:21:21,699 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T07:21:21,699 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T07:21:21,699 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:21,699 502 | std::tuple(__k), 2021-07-14T07:21:21,699 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:21,699 503 | std::tuple<>()); 2021-07-14T07:21:21,699 | ~~~~~~~~~~~~~~~ 2021-07-14T07:21:22,613 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/GetNeighborList.cpp -o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o 2021-07-14T07:21:24,886 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/RawRadialDistribution.cpp -o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o 2021-07-14T07:21:26,568 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:26,569 from Tools/RawRadialDistribution.cpp:29: 2021-07-14T07:21:26,569 Tools/RawRadialDistribution.cpp: In function ‘void AsapNS::RawRadialDistribution(PyObject*, int, const int*, double, int, AsapNS::RDFtype&, AsapNS::RDFcountType&, long int*)’: 2021-07-14T07:21:26,569 Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integer expressions of different signedness: ‘std::vector, long int*> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:26,569 55 | ASSERT(result.size() == nGroups); 2021-07-14T07:21:26,569 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T07:21:26,569 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:26,569 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:26,570 | ^~ 2021-07-14T07:21:26,578 Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:26,578 56 | ASSERT(counts.size() == nGroups); 2021-07-14T07:21:26,578 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T07:21:26,579 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:26,579 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:26,579 | ^~ 2021-07-14T07:21:28,196 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o 2021-07-14T07:21:30,740 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c VersionInfo_autogen/version_piwheels35_s.cpp -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels35_s.o 2021-07-14T07:21:30,969 VersionInfo_autogen/version_piwheels35_s.cpp:15:61: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2021-07-14T07:21:30,969 15 | return ("ASAP version 3.11.6 serial, compiled " __DATE__ " " __TIME__ " on piwheels35 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T07:21:30,969 | ^~~~~~~~ 2021-07-14T07:21:30,970 VersionInfo_autogen/version_piwheels35_s.cpp:15:74: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2021-07-14T07:21:30,971 15 | return ("ASAP version 3.11.6 serial, compiled " __DATE__ " " __TIME__ " on piwheels35 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T07:21:30,971 | ^~~~~~~~ 2021-07-14T07:21:31,594 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels35_s.o -lm -o build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so 2021-07-14T07:21:33,070 *** Building the asap-python executable *** 2021-07-14T07:21:33,072 *** COMPILING: ['ParallelInterface/mpi.c'] 2021-07-14T07:21:33,072 mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o -c ParallelInterface/mpi.c 2021-07-14T07:21:34,578 *** COMPILING: ['Parallel/ParallelAtoms.cpp', 'Parallel/ParallelPotential.cpp', 'Parallel/RegularGridDecomposition.cpp', 'ParallelInterface/AsapParallel.cpp', 'ParallelInterface/ParallelAtomsInterface.cpp', 'ParallelInterface/ParallelNeighborListInterface.cpp', 'ParallelInterface/ParallelPotentialInterface.cpp', 'VersionInfo_autogen/version_piwheels35_p.cpp'] 2021-07-14T07:21:34,578 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o -c Parallel/ParallelAtoms.cpp 2021-07-14T07:21:36,460 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:36,460 from Parallel/ParallelAtoms.h:28, 2021-07-14T07:21:36,460 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T07:21:36,460 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T07:21:36,460 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:36,460 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T07:21:36,461 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,461 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:36,461 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:36,461 | ^~ 2021-07-14T07:21:36,461 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T07:21:36,461 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:36,461 301 | ASSERT(sendbuf.size() == size); 2021-07-14T07:21:36,462 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T07:21:36,462 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:36,462 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:36,462 | ^~ 2021-07-14T07:21:36,496 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::Migrate(bool)’: 2021-07-14T07:21:36,496 Parallel/ParallelAtoms.cpp:241:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:36,497 241 | (sendlist->size() < nProcessors)); 2021-07-14T07:21:36,497 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2021-07-14T07:21:36,497 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:36,497 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:36,497 | ^~ 2021-07-14T07:21:36,532 Parallel/ParallelAtoms.cpp:318:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,532 318 | for (int j = 0; j < arrays.size(); j++) 2021-07-14T07:21:36,532 | ~~^~~~~~~~~~~~~~~ 2021-07-14T07:21:36,533 Parallel/ParallelAtoms.cpp:338:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,533 338 | for (int j = 0; j < new_arrays.size(); j++) 2021-07-14T07:21:36,533 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,534 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:36,534 from Parallel/ParallelAtoms.h:28, 2021-07-14T07:21:36,534 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T07:21:36,534 Parallel/ParallelAtoms.cpp:345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,534 345 | ASSERT(b - b0 == receiveBuffer.size()); 2021-07-14T07:21:36,534 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,534 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:36,534 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:36,535 | ^~ 2021-07-14T07:21:36,581 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::UpdateGhostData()’: 2021-07-14T07:21:36,581 Parallel/ParallelAtoms.cpp:609:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,581 609 | for (int i = 0; i < array_names.size(); i++) 2021-07-14T07:21:36,581 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,583 Parallel/ParallelAtoms.cpp:630:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,583 630 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T07:21:36,583 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,583 Parallel/ParallelAtoms.cpp:637:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,583 637 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T07:21:36,584 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,591 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:36,591 from Parallel/ParallelAtoms.h:28, 2021-07-14T07:21:36,591 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T07:21:36,591 Parallel/ParallelAtoms.cpp:649:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,591 649 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); 2021-07-14T07:21:36,591 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,592 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:36,592 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:36,592 | ^~ 2021-07-14T07:21:36,592 Parallel/ParallelAtoms.cpp:659:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,592 659 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T07:21:36,592 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,598 Parallel/ParallelAtoms.cpp: In member function ‘virtual void AsapNS::ParallelAtoms::CommunicateData(double*, int)’: 2021-07-14T07:21:36,598 Parallel/ParallelAtoms.cpp:717:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,598 717 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T07:21:36,598 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,631 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:36,631 from Parallel/ParallelAtoms.h:28, 2021-07-14T07:21:36,631 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T07:21:36,631 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T07:21:36,632 Parallel/ParallelAtoms.cpp:1105:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:36,632 1105 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T07:21:36,632 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,632 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:36,632 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:36,632 | ^~ 2021-07-14T07:21:36,632 Parallel/ParallelAtoms.cpp:1111:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,633 1111 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T07:21:36,633 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,644 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:36,644 from Parallel/ParallelAtoms.h:28, 2021-07-14T07:21:36,644 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T07:21:36,644 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T07:21:36,644 Parallel/ParallelAtoms.cpp:1138:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:36,644 1138 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T07:21:36,645 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:36,645 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:36,645 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:36,645 | ^~ 2021-07-14T07:21:36,645 Parallel/ParallelAtoms.cpp:1144:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T07:21:36,645 1144 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T07:21:36,646 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:41,905 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o -c Parallel/ParallelPotential.cpp 2021-07-14T07:21:43,742 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:43,742 from Parallel/ParallelPotential.h:28, 2021-07-14T07:21:43,742 from Parallel/ParallelPotential.cpp:24: 2021-07-14T07:21:43,742 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T07:21:43,742 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:43,742 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T07:21:43,742 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:43,743 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:43,743 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:43,743 | ^~ 2021-07-14T07:21:43,744 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T07:21:43,744 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:43,744 301 | ASSERT(sendbuf.size() == size); 2021-07-14T07:21:43,744 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T07:21:43,745 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:43,745 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:43,745 | ^~ 2021-07-14T07:21:45,516 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o -c Parallel/RegularGridDecomposition.cpp 2021-07-14T07:21:47,350 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:47,350 from Parallel/RegularGridDecomposition.cpp:24: 2021-07-14T07:21:47,350 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T07:21:47,351 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:47,351 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T07:21:47,351 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T07:21:47,351 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:47,351 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:47,351 | ^~ 2021-07-14T07:21:47,351 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T07:21:47,352 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T07:21:47,352 301 | ASSERT(sendbuf.size() == size); 2021-07-14T07:21:47,352 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T07:21:47,352 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:47,352 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:47,352 | ^~ 2021-07-14T07:21:50,035 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o -c ParallelInterface/AsapParallel.cpp 2021-07-14T07:21:52,183 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o -c ParallelInterface/ParallelAtomsInterface.cpp 2021-07-14T07:21:54,043 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o -c ParallelInterface/ParallelNeighborListInterface.cpp 2021-07-14T07:21:55,469 In file included from Basics/AsapPython.h:44, 2021-07-14T07:21:55,469 from ParallelInterface/ParallelNeighborListInterface.cpp:2: 2021-07-14T07:21:55,469 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T07:21:55,470 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:21:55,470 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T07:21:55,470 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:55,470 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:55,470 | ^~ 2021-07-14T07:21:55,479 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T07:21:55,480 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:21:55,480 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T07:21:55,480 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:55,480 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:55,480 | ^~ 2021-07-14T07:21:55,488 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T07:21:55,488 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:21:55,488 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T07:21:55,488 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:55,488 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:55,489 | ^~ 2021-07-14T07:21:55,499 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T07:21:55,500 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:21:55,500 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T07:21:55,500 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:55,500 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:55,500 | ^~ 2021-07-14T07:21:55,510 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T07:21:55,510 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T07:21:55,510 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T07:21:55,510 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T07:21:55,511 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T07:21:55,511 | ^~ 2021-07-14T07:21:55,702 ParallelInterface/ParallelNeighborListInterface.cpp: In function ‘PyObject* PyAsap_NewNeighborCellLocator_Parallel(PyObject*, PyObject*, PyObject*)’: 2021-07-14T07:21:55,703 ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:21:55,703 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T07:21:55,703 | ^~~~~~ 2021-07-14T07:21:55,703 ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:21:55,703 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T07:21:55,703 | ^~~~~~~ 2021-07-14T07:21:55,704 ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:21:55,704 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T07:21:55,704 | ^~~~~~~~~~~~~ 2021-07-14T07:21:56,084 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o -c ParallelInterface/ParallelPotentialInterface.cpp 2021-07-14T07:21:57,444 ParallelInterface/ParallelPotentialInterface.cpp: In function ‘int PyAsap_ParPotInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T07:21:57,444 ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T07:21:57,445 48 | static char *kwlist[] = {"potential", NULL}; 2021-07-14T07:21:57,445 | ^~~~~~~~~~~ 2021-07-14T07:21:57,842 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels35_p.o -c VersionInfo_autogen/version_piwheels35_p.cpp 2021-07-14T07:21:58,660 mpicxx -o build/bin.linux-armv7l-3.9/asap-python build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels35_p.o -L/usr/lib/python3.9/config-3.9-arm-linux-gnueabihf -lm -lpython3.9 -lm -lpython3.9 -lcrypt -lpthread -ldl -lutil -lm -lm -Wl,-z,relro -g -fwrapv -O2 -lexpat -L/usr/lib -lz -lexpat -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-14T07:22:00,383 running build_scripts 2021-07-14T07:22:00,383 Protecting build/bin.linux-armv7l-3.9/asap-python from ajustment 2021-07-14T07:22:00,384 creating build/scripts-3.9 2021-07-14T07:22:00,385 copying and adjusting scripts/asap-qsub -> build/scripts-3.9 2021-07-14T07:22:00,388 copying and adjusting scripts/asap-sbatch -> build/scripts-3.9 2021-07-14T07:22:00,390 changing mode of build/scripts-3.9/asap-qsub from 644 to 755 2021-07-14T07:22:00,390 changing mode of build/scripts-3.9/asap-sbatch from 644 to 755 2021-07-14T07:22:00,391 copying build/bin.linux-armv7l-3.9/asap-python -> build/scripts-3.9 2021-07-14T07:22:00,649 installing to build/bdist.linux-armv7l/wheel 2021-07-14T07:22:00,649 running install 2021-07-14T07:22:00,650 running install_lib 2021-07-14T07:22:00,655 creating build/bdist.linux-armv7l 2021-07-14T07:22:00,655 creating build/bdist.linux-armv7l/wheel 2021-07-14T07:22:00,656 copying build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-14T07:22:00,865 creating build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:00,867 copying build/lib.linux-armv7l-3.9/asap3/version.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:00,870 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T07:22:00,871 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T07:22:00,873 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T07:22:00,874 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T07:22:00,877 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T07:22:00,879 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Surface.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T07:22:00,883 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T07:22:00,884 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T07:22:00,886 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T07:22:00,889 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T07:22:00,891 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Basin.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T07:22:00,893 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T07:22:00,896 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Start.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T07:22:00,899 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Metropolis.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T07:22:00,901 copying build/lib.linux-armv7l-3.9/asap3/__init__.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:00,903 copying build/lib.linux-armv7l-3.9/asap3/fixepydoc.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:00,906 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,907 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/atommontecarlodata.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,909 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/cluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,912 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,914 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/AdsCalc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,916 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T07:22:00,918 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T07:22:00,919 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/au.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T07:22:00,921 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T07:22:00,924 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T07:22:00,930 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T07:22:00,931 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T07:22:00,934 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/surface.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T07:22:00,938 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/atom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T07:22:00,942 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/Logger.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,945 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/clusteratom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,948 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/resizecluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,951 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/langmuirExpression.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,954 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/mc_result.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T07:22:00,957 copying build/lib.linux-armv7l-3.9/asap3/GuptaParameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:00,960 copying build/lib.linux-armv7l-3.9/asap3/EMT2013Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:00,963 copying build/lib.linux-armv7l-3.9/asap3/EMT2011Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:00,965 copying build/lib.linux-armv7l-3.9/asap3/constraints.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:00,968 copying build/lib.linux-armv7l-3.9/asap3/EMT2011_py.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:00,973 creating build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T07:22:00,974 copying build/lib.linux-armv7l-3.9/asap3/setup/multidislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T07:22:00,978 copying build/lib.linux-armv7l-3.9/asap3/setup/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T07:22:00,980 copying build/lib.linux-armv7l-3.9/asap3/setup/displacementfield.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T07:22:00,982 copying build/lib.linux-armv7l-3.9/asap3/setup/dislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T07:22:00,985 copying build/lib.linux-armv7l-3.9/asap3/setup/VelocityDistribution.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T07:22:00,988 creating build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:00,989 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/helpers.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:00,992 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:00,994 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/quat_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:00,996 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/plane_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:00,998 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/dislocated.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:01,001 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/grain_structures.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:01,003 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/energy.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:01,005 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:01,008 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T07:22:01,011 creating build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T07:22:01,012 copying build/lib.linux-armv7l-3.9/asap3/optimize/fire.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T07:22:01,014 copying build/lib.linux-armv7l-3.9/asap3/optimize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T07:22:01,016 copying build/lib.linux-armv7l-3.9/asap3/optimize/mdmin.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T07:22:01,018 copying build/lib.linux-armv7l-3.9/asap3/optimize/optimize.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T07:22:01,021 creating build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T07:22:01,022 copying build/lib.linux-armv7l-3.9/asap3/io/ReadOldFiles.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T07:22:01,024 copying build/lib.linux-armv7l-3.9/asap3/io/cpu_setup.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T07:22:01,026 copying build/lib.linux-armv7l-3.9/asap3/io/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T07:22:01,028 copying build/lib.linux-armv7l-3.9/asap3/io/trajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T07:22:01,031 copying build/lib.linux-armv7l-3.9/asap3/io/bundletrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T07:22:01,034 copying build/lib.linux-armv7l-3.9/asap3/mpi.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:01,036 copying build/lib.linux-armv7l-3.9/asap3/timing.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:01,039 creating build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,040 copying build/lib.linux-armv7l-3.9/asap3/analysis/cutcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,042 copying build/lib.linux-armv7l-3.9/asap3/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,045 copying build/lib.linux-armv7l-3.9/asap3/analysis/averagepositions.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,048 copying build/lib.linux-armv7l-3.9/asap3/analysis/localstructure.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,050 copying build/lib.linux-armv7l-3.9/asap3/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,052 copying build/lib.linux-armv7l-3.9/asap3/analysis/clusterposition.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,054 copying build/lib.linux-armv7l-3.9/asap3/analysis/particle.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,056 copying build/lib.linux-armv7l-3.9/asap3/analysis/findcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,059 copying build/lib.linux-armv7l-3.9/asap3/analysis/ptm.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T07:22:01,062 creating build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,063 copying build/lib.linux-armv7l-3.9/asap3/Tools/Timing.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,066 copying build/lib.linux-armv7l-3.9/asap3/Tools/OptimizationDatabase.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,069 copying build/lib.linux-armv7l-3.9/asap3/Tools/EMT_two_atom_test.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,072 creating build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,073 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/EMT.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,076 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,079 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,081 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Optimization.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,084 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/RGL.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,086 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Performance.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,088 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Search.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,091 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,094 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Quantities.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,098 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Sampling.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,100 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/GetParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T07:22:01,102 copying build/lib.linux-armv7l-3.9/asap3/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,104 copying build/lib.linux-armv7l-3.9/asap3/Tools/MaterialProperties.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,107 copying build/lib.linux-armv7l-3.9/asap3/Tools/niflheim.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,109 copying build/lib.linux-armv7l-3.9/asap3/Tools/SurfaceEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,111 copying build/lib.linux-armv7l-3.9/asap3/Tools/AsapFileToTrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,114 copying build/lib.linux-armv7l-3.9/asap3/Tools/ElasticConstants.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,116 copying build/lib.linux-armv7l-3.9/asap3/Tools/AtomicEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T07:22:01,119 creating build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,120 copying build/lib.linux-armv7l-3.9/asap3/md/nvtberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,122 copying build/lib.linux-armv7l-3.9/asap3/md/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,124 copying build/lib.linux-armv7l-3.9/asap3/md/verlet_fast.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,127 copying build/lib.linux-armv7l-3.9/asap3/md/langevin.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,130 copying build/lib.linux-armv7l-3.9/asap3/md/velocitydistribution.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,132 copying build/lib.linux-armv7l-3.9/asap3/md/md.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,134 copying build/lib.linux-armv7l-3.9/asap3/md/nptberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,136 copying build/lib.linux-armv7l-3.9/asap3/md/npt.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,138 copying build/lib.linux-armv7l-3.9/asap3/md/verlet.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T07:22:01,140 copying build/lib.linux-armv7l-3.9/asap3/memory.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:01,142 copying build/lib.linux-armv7l-3.9/asap3/testtools.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T07:22:01,146 creating build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,147 copying build/lib.linux-armv7l-3.9/asap3/Internal/Builtins.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,149 copying build/lib.linux-armv7l-3.9/asap3/Internal/MonteCarloAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,151 copying build/lib.linux-armv7l-3.9/asap3/Internal/Collector.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,154 copying build/lib.linux-armv7l-3.9/asap3/Internal/BuiltinPotentials.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,157 copying build/lib.linux-armv7l-3.9/asap3/Internal/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,159 copying build/lib.linux-armv7l-3.9/asap3/Internal/ListOfElements.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,161 copying build/lib.linux-armv7l-3.9/asap3/Internal/UtilityFunctions.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,163 copying build/lib.linux-armv7l-3.9/asap3/Internal/Threads.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,165 copying build/lib.linux-armv7l-3.9/asap3/Internal/ParallelListOfAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,168 copying build/lib.linux-armv7l-3.9/asap3/Internal/OpenKIMcalculator.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,171 copying build/lib.linux-armv7l-3.9/asap3/Internal/EMTParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,175 creating build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T07:22:01,176 copying build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T07:22:01,178 copying build/lib.linux-armv7l-3.9/asap3/Internal/CheckArray.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,181 copying build/lib.linux-armv7l-3.9/asap3/Internal/checkversion.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,183 copying build/lib.linux-armv7l-3.9/asap3/Internal/Subject.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T07:22:01,185 running install_egg_info 2021-07-14T07:22:01,218 running egg_info 2021-07-14T07:22:01,219 creating asap3.egg-info 2021-07-14T07:22:01,220 writing asap3.egg-info/PKG-INFO 2021-07-14T07:22:01,223 writing dependency_links to asap3.egg-info/dependency_links.txt 2021-07-14T07:22:01,226 writing top-level names to asap3.egg-info/top_level.txt 2021-07-14T07:22:01,229 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T07:22:01,280 reading manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T07:22:01,282 reading manifest template 'MANIFEST.in' 2021-07-14T07:22:01,369 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T07:22:01,370 adding license file 'LICENSE' 2021-07-14T07:22:01,370 adding license file 'LICENSE.LESSER' 2021-07-14T07:22:01,389 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T07:22:01,392 Copying asap3.egg-info to build/bdist.linux-armv7l/wheel/asap3-3.11.6-py3.9.egg-info 2021-07-14T07:22:01,404 running install_scripts 2021-07-14T07:22:01,475 creating build/bdist.linux-armv7l/wheel/asap3-3.11.6.data 2021-07-14T07:22:01,475 creating build/bdist.linux-armv7l/wheel/asap3-3.11.6.data/scripts 2021-07-14T07:22:01,477 copying build/scripts-3.9/asap-sbatch -> build/bdist.linux-armv7l/wheel/asap3-3.11.6.data/scripts 2021-07-14T07:22:01,480 copying build/scripts-3.9/asap-qsub -> build/bdist.linux-armv7l/wheel/asap3-3.11.6.data/scripts 2021-07-14T07:22:01,483 copying build/scripts-3.9/asap-python -> build/bdist.linux-armv7l/wheel/asap3-3.11.6.data/scripts 2021-07-14T07:22:01,745 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.6.data/scripts/asap-sbatch to 755 2021-07-14T07:22:01,746 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.6.data/scripts/asap-qsub to 755 2021-07-14T07:22:01,746 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.6.data/scripts/asap-python to 755 2021-07-14T07:22:01,764 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-14T07:22:01,765 adding license file "LICENSE.LESSER" (matched pattern "LICEN[CS]E*") 2021-07-14T07:22:01,775 creating build/bdist.linux-armv7l/wheel/asap3-3.11.6.dist-info/WHEEL 2021-07-14T07:22:01,779 creating '/tmp/pip-wheel-5i1wab0_/asap3-3.11.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T07:22:03,809 adding '_asap_p3.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T07:22:03,894 adding 'asap3/EMT2011Parameters.py' 2021-07-14T07:22:03,897 adding 'asap3/EMT2011_py.py' 2021-07-14T07:22:03,899 adding 'asap3/EMT2013Parameters.py' 2021-07-14T07:22:03,900 adding 'asap3/GuptaParameters.py' 2021-07-14T07:22:03,901 adding 'asap3/__init__.py' 2021-07-14T07:22:03,903 adding 'asap3/constraints.py' 2021-07-14T07:22:03,904 adding 'asap3/fixepydoc.py' 2021-07-14T07:22:03,905 adding 'asap3/memory.py' 2021-07-14T07:22:03,906 adding 'asap3/mpi.py' 2021-07-14T07:22:03,908 adding 'asap3/testtools.py' 2021-07-14T07:22:03,909 adding 'asap3/timing.py' 2021-07-14T07:22:03,910 adding 'asap3/version.py' 2021-07-14T07:22:03,914 adding 'asap3/Internal/BuiltinPotentials.py' 2021-07-14T07:22:03,915 adding 'asap3/Internal/Builtins.py' 2021-07-14T07:22:03,916 adding 'asap3/Internal/CheckArray.py' 2021-07-14T07:22:03,918 adding 'asap3/Internal/Collector.py' 2021-07-14T07:22:03,920 adding 'asap3/Internal/EMTParameters.py' 2021-07-14T07:22:03,921 adding 'asap3/Internal/ListOfElements.py' 2021-07-14T07:22:03,922 adding 'asap3/Internal/MonteCarloAtoms.py' 2021-07-14T07:22:03,924 adding 'asap3/Internal/OpenKIMcalculator.py' 2021-07-14T07:22:03,927 adding 'asap3/Internal/ParallelListOfAtoms.py' 2021-07-14T07:22:03,928 adding 'asap3/Internal/Subject.py' 2021-07-14T07:22:03,930 adding 'asap3/Internal/Threads.py' 2021-07-14T07:22:03,931 adding 'asap3/Internal/UtilityFunctions.py' 2021-07-14T07:22:03,932 adding 'asap3/Internal/__init__.py' 2021-07-14T07:22:03,934 adding 'asap3/Internal/checkversion.py' 2021-07-14T07:22:03,935 adding 'asap3/Internal/Compatibility/__init__.py' 2021-07-14T07:22:03,937 adding 'asap3/MonteCarlo/Base.py' 2021-07-14T07:22:03,939 adding 'asap3/MonteCarlo/Basin.py' 2021-07-14T07:22:03,940 adding 'asap3/MonteCarlo/Metropolis.py' 2021-07-14T07:22:03,941 adding 'asap3/MonteCarlo/Start.py' 2021-07-14T07:22:03,942 adding 'asap3/MonteCarlo/__init__.py' 2021-07-14T07:22:03,945 adding 'asap3/MonteCarlo/Moves/Base.py' 2021-07-14T07:22:03,947 adding 'asap3/MonteCarlo/Moves/Surface.py' 2021-07-14T07:22:03,948 adding 'asap3/MonteCarlo/Moves/__init__.py' 2021-07-14T07:22:03,950 adding 'asap3/MonteCarlo/Moves/Data/__init__.py' 2021-07-14T07:22:03,952 adding 'asap3/MonteCarlo/Moves/Data/fcc.py' 2021-07-14T07:22:03,953 adding 'asap3/MonteCarlo/Moves/Data/symmetry.py' 2021-07-14T07:22:03,955 adding 'asap3/Tools/AsapFileToTrajectory.py' 2021-07-14T07:22:03,957 adding 'asap3/Tools/AtomicEnergies.py' 2021-07-14T07:22:03,958 adding 'asap3/Tools/EMT_two_atom_test.py' 2021-07-14T07:22:03,960 adding 'asap3/Tools/ElasticConstants.py' 2021-07-14T07:22:03,961 adding 'asap3/Tools/MaterialProperties.py' 2021-07-14T07:22:03,963 adding 'asap3/Tools/OptimizationDatabase.py' 2021-07-14T07:22:03,964 adding 'asap3/Tools/SurfaceEnergies.py' 2021-07-14T07:22:03,966 adding 'asap3/Tools/Timing.py' 2021-07-14T07:22:03,967 adding 'asap3/Tools/__init__.py' 2021-07-14T07:22:03,969 adding 'asap3/Tools/niflheim.py' 2021-07-14T07:22:03,971 adding 'asap3/Tools/ParameterOptimization/EMT.py' 2021-07-14T07:22:03,972 adding 'asap3/Tools/ParameterOptimization/GetParameters.py' 2021-07-14T07:22:03,975 adding 'asap3/Tools/ParameterOptimization/Optimization.py' 2021-07-14T07:22:03,976 adding 'asap3/Tools/ParameterOptimization/Performance.py' 2021-07-14T07:22:03,980 adding 'asap3/Tools/ParameterOptimization/Quantities.py' 2021-07-14T07:22:03,982 adding 'asap3/Tools/ParameterOptimization/RGL.py' 2021-07-14T07:22:03,983 adding 'asap3/Tools/ParameterOptimization/Sampling.py' 2021-07-14T07:22:03,991 adding 'asap3/Tools/ParameterOptimization/ScipyFmin.py' 2021-07-14T07:22:03,994 adding 'asap3/Tools/ParameterOptimization/Search.py' 2021-07-14T07:22:03,996 adding 'asap3/Tools/ParameterOptimization/SearchParallel.py' 2021-07-14T07:22:03,997 adding 'asap3/Tools/ParameterOptimization/__init__.py' 2021-07-14T07:22:03,999 adding 'asap3/analysis/__init__.py' 2021-07-14T07:22:04,001 adding 'asap3/analysis/averagepositions.py' 2021-07-14T07:22:04,002 adding 'asap3/analysis/clusterposition.py' 2021-07-14T07:22:04,003 adding 'asap3/analysis/cutcluster.py' 2021-07-14T07:22:04,005 adding 'asap3/analysis/findcluster.py' 2021-07-14T07:22:04,007 adding 'asap3/analysis/localstructure.py' 2021-07-14T07:22:04,009 adding 'asap3/analysis/particle.py' 2021-07-14T07:22:04,011 adding 'asap3/analysis/ptm.py' 2021-07-14T07:22:04,013 adding 'asap3/analysis/rdf.py' 2021-07-14T07:22:04,015 adding 'asap3/io/ReadOldFiles.py' 2021-07-14T07:22:04,016 adding 'asap3/io/__init__.py' 2021-07-14T07:22:04,019 adding 'asap3/io/bundletrajectory.py' 2021-07-14T07:22:04,021 adding 'asap3/io/cpu_setup.py' 2021-07-14T07:22:04,022 adding 'asap3/io/trajectory.py' 2021-07-14T07:22:04,024 adding 'asap3/md/__init__.py' 2021-07-14T07:22:04,026 adding 'asap3/md/langevin.py' 2021-07-14T07:22:04,027 adding 'asap3/md/md.py' 2021-07-14T07:22:04,029 adding 'asap3/md/npt.py' 2021-07-14T07:22:04,030 adding 'asap3/md/nptberendsen.py' 2021-07-14T07:22:04,031 adding 'asap3/md/nvtberendsen.py' 2021-07-14T07:22:04,032 adding 'asap3/md/velocitydistribution.py' 2021-07-14T07:22:04,033 adding 'asap3/md/verlet.py' 2021-07-14T07:22:04,034 adding 'asap3/md/verlet_fast.py' 2021-07-14T07:22:04,036 adding 'asap3/nanoparticle_mc/AdsCalc.py' 2021-07-14T07:22:04,037 adding 'asap3/nanoparticle_mc/Logger.py' 2021-07-14T07:22:04,039 adding 'asap3/nanoparticle_mc/__init__.py' 2021-07-14T07:22:04,040 adding 'asap3/nanoparticle_mc/atommontecarlodata.py' 2021-07-14T07:22:04,043 adding 'asap3/nanoparticle_mc/cluster.py' 2021-07-14T07:22:04,044 adding 'asap3/nanoparticle_mc/clusteratom.py' 2021-07-14T07:22:04,046 adding 'asap3/nanoparticle_mc/langmuirExpression.py' 2021-07-14T07:22:04,047 adding 'asap3/nanoparticle_mc/mc_result.py' 2021-07-14T07:22:04,048 adding 'asap3/nanoparticle_mc/resizecluster.py' 2021-07-14T07:22:04,050 adding 'asap3/nanoparticle_mc/data/__init__.py' 2021-07-14T07:22:04,051 adding 'asap3/nanoparticle_mc/data/au.py' 2021-07-14T07:22:04,053 adding 'asap3/nanoparticle_mc/data/fcc.py' 2021-07-14T07:22:04,055 adding 'asap3/nanoparticle_mc/data/symmetry.py' 2021-07-14T07:22:04,056 adding 'asap3/nanoparticle_mc/montecarlo/__init__.py' 2021-07-14T07:22:04,061 adding 'asap3/nanoparticle_mc/montecarlo/atom.py' 2021-07-14T07:22:04,064 adding 'asap3/nanoparticle_mc/montecarlo/surface.py' 2021-07-14T07:22:04,066 adding 'asap3/optimize/__init__.py' 2021-07-14T07:22:04,067 adding 'asap3/optimize/fire.py' 2021-07-14T07:22:04,069 adding 'asap3/optimize/mdmin.py' 2021-07-14T07:22:04,070 adding 'asap3/optimize/optimize.py' 2021-07-14T07:22:04,071 adding 'asap3/setup/VelocityDistribution.py' 2021-07-14T07:22:04,073 adding 'asap3/setup/__init__.py' 2021-07-14T07:22:04,074 adding 'asap3/setup/dislocation.py' 2021-07-14T07:22:04,076 adding 'asap3/setup/displacementfield.py' 2021-07-14T07:22:04,078 adding 'asap3/setup/multidislocation.py' 2021-07-14T07:22:04,080 adding 'asap3/setup/nanocrystalline/__init__.py' 2021-07-14T07:22:04,081 adding 'asap3/setup/nanocrystalline/dislocated.py' 2021-07-14T07:22:04,082 adding 'asap3/setup/nanocrystalline/energy.py' 2021-07-14T07:22:04,084 adding 'asap3/setup/nanocrystalline/grain_structures.py' 2021-07-14T07:22:04,086 adding 'asap3/setup/nanocrystalline/helpers.py' 2021-07-14T07:22:04,087 adding 'asap3/setup/nanocrystalline/nanocrystalline.py' 2021-07-14T07:22:04,090 adding 'asap3/setup/nanocrystalline/nanocrystalline_orig.py' 2021-07-14T07:22:04,091 adding 'asap3/setup/nanocrystalline/plane_utils.py' 2021-07-14T07:22:04,092 adding 'asap3/setup/nanocrystalline/quat_utils.py' 2021-07-14T07:22:06,355 adding 'asap3-3.11.6.data/scripts/asap-python' 2021-07-14T07:22:06,449 adding 'asap3-3.11.6.data/scripts/asap-qsub' 2021-07-14T07:22:06,450 adding 'asap3-3.11.6.data/scripts/asap-sbatch' 2021-07-14T07:22:06,457 adding 'asap3-3.11.6.dist-info/LICENSE' 2021-07-14T07:22:06,459 adding 'asap3-3.11.6.dist-info/LICENSE.LESSER' 2021-07-14T07:22:06,460 adding 'asap3-3.11.6.dist-info/METADATA' 2021-07-14T07:22:06,461 adding 'asap3-3.11.6.dist-info/WHEEL' 2021-07-14T07:22:06,462 adding 'asap3-3.11.6.dist-info/top_level.txt' 2021-07-14T07:22:06,464 adding 'asap3-3.11.6.dist-info/RECORD' 2021-07-14T07:22:06,578 removing build/bdist.linux-armv7l/wheel 2021-07-14T07:22:06,745 Building wheel for asap3 (setup.py): finished with status 'done' 2021-07-14T07:22:06,852 Created wheel for asap3: filename=asap3-3.11.6-cp39-cp39-linux_armv7l.whl size=8467790 sha256=f0f41cc1ae692ce50dfc077352f0f51eba08a5b8404507766b610820d5bfa57f 2021-07-14T07:22:06,852 Stored in directory: /tmp/pip-ephem-wheel-cache-p918zcpg/wheels/8a/b6/be/f13c64b0ec0d1d65f0639ca4ab4635a60bbc752a05c079c6e5 2021-07-14T07:22:06,871 Successfully built asap3 2021-07-14T07:22:07,144 Removed build tracker: '/tmp/pip-req-tracker-yo2sll25'