2021-07-14T07:32:37,178 Created temporary directory: /tmp/pip-ephem-wheel-cache-u6fsn4_5
2021-07-14T07:32:37,181 Created temporary directory: /tmp/pip-req-tracker-o52t4lfx
2021-07-14T07:32:37,182 Initialized build tracking at /tmp/pip-req-tracker-o52t4lfx
2021-07-14T07:32:37,182 Created build tracker: /tmp/pip-req-tracker-o52t4lfx
2021-07-14T07:32:37,182 Entered build tracker: /tmp/pip-req-tracker-o52t4lfx
2021-07-14T07:32:37,183 Created temporary directory: /tmp/pip-wheel-1wg6kx45
2021-07-14T07:32:37,212 1 location(s) to search for versions of compare-reads:
2021-07-14T07:32:37,212 * https://pypi.org/simple/compare-reads/
2021-07-14T07:32:37,213 Fetching project page and analyzing links: https://pypi.org/simple/compare-reads/
2021-07-14T07:32:37,213 Getting page https://pypi.org/simple/compare-reads/
2021-07-14T07:32:37,215 Found index url https://pypi.org/simple
2021-07-14T07:32:37,404   Found link https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz#sha256=ebcb6182d4d125cbf45bf64188e806c5bb79c72691c578fc2d9d5088b554665e (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 0.0.0
2021-07-14T07:32:37,405   Found link https://files.pythonhosted.org/packages/72/64/1366b20e77d55b4277a02b3015b72c81a40705128311898f17bc1d2cd261/compare-reads-0.0.1.tar.gz#sha256=407f52d966fe31cc25b972cdfca61f329f208649c2a70970a29a82bfdef9045f (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 0.0.1
2021-07-14T07:32:37,422   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6d/ed/427b56f3d3ec34bb0bcd08bc20a10c7357cb54520af28d2b48c69c6aa27e/compare_reads-0.0.1-cp27-cp27m-macosx_10_6_intel.whl#sha256=74f001d5e06677a7cf7f284538db98efb9979998a7290c91150dc509e9bc65d9 (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2021-07-14T07:32:37,422   Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/80/39/821df71efdefedde84e5b4e864ffc2f37a5397a4efebd6d4c95a24357a9e/compare_reads-0.0.1-cp27-cp27m-manylinux1_x86_64.whl#sha256=483efc5c974288d04a6ddddcf429eaa0843fb8927940dcad6fbe07dd5fcf3067 (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2021-07-14T07:32:37,423   Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a7/e3/afbcba872088f01073254d7d2b1e0ce96816353e7a5693f634a586d7b43e/compare_reads-0.0.1-cp27-cp27mu-manylinux1_x86_64.whl#sha256=d6c129eaf07b3b3c65f543517d56ea37d886e1c5c4c4408d005c2165e09a1f38 (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2021-07-14T07:32:37,423   Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/e6/e1/9ecdb42750123ead9f7b5856daeccfbe8c6dd076fc592dbfb1bfa27e210b/compare_reads-0.0.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=93cc5ab4912c2c6087da6316ef88d62887b5836ad6b4d08617eb119f39756ff3 (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2021-07-14T07:32:37,424   Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8b/49/9bb089dfa181c376f5ed74dd8597d576fb5574668cacef326682bbf909a5/compare_reads-0.0.1-cp36-cp36m-macosx_10_6_intel.whl#sha256=293a121f08620a786d3d5089486b95ef558851cdf148fc792542db72a6f8784d (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2021-07-14T07:32:37,424   Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ba/4e/b4d0336569d7898aed9eb879f211f69661fb7347876a9a0b69f9c39e5aff/compare_reads-0.0.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=d2a9be81cf4385faf625be154749b55ea207ab9a9ea997698da33b93db952f6b (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2021-07-14T07:32:37,425   Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/db/5e/e05f247c44e89224cb4aaf28a6b62b0ba06fc0e07544a0822d4fc2eafa96/compare_reads-0.0.1-cp37-cp37m-macosx_10_6_intel.whl#sha256=fdf274dcdfec55e9b256ddeca0ed667810d3e945d0353cc1d6221c59c9b59103 (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2021-07-14T07:32:37,425   Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/54/a9/dea8942b4ac2ef17c6c7afdce1d28bb549682e29255618c2d612649f8f76/compare_reads-0.0.1-cp37-cp37m-manylinux1_x86_64.whl#sha256=7bd635ea337070252f2c3289dfe027330a9be4fd6016e9ae64124ca94c071700 (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2021-07-14T07:32:37,425 Skipping link: not a file: https://pypi.org/simple/compare-reads/
2021-07-14T07:32:37,426 Given no hashes to check 1 links for project 'compare-reads': discarding no candidates
2021-07-14T07:32:37,445 Collecting compare-reads==0.0.0
2021-07-14T07:32:37,447   Created temporary directory: /tmp/pip-unpack-avmvx85z
2021-07-14T07:32:37,620   Downloading compare-reads-0.0.0.tar.gz (46 kB)
2021-07-14T07:32:37,739   Added compare-reads==0.0.0 from https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz#sha256=ebcb6182d4d125cbf45bf64188e806c5bb79c72691c578fc2d9d5088b554665e to build tracker '/tmp/pip-req-tracker-o52t4lfx'
2021-07-14T07:32:37,740     Running setup.py (path:/tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/setup.py) egg_info for package compare-reads
2021-07-14T07:32:37,741     Created temporary directory: /tmp/pip-pip-egg-info-58faed8u
2021-07-14T07:32:37,741     Running command python setup.py egg_info
2021-07-14T07:32:43,248     running egg_info
2021-07-14T07:32:43,251     creating /tmp/pip-pip-egg-info-58faed8u/compare_reads.egg-info
2021-07-14T07:32:43,252     writing /tmp/pip-pip-egg-info-58faed8u/compare_reads.egg-info/PKG-INFO
2021-07-14T07:32:43,255     writing dependency_links to /tmp/pip-pip-egg-info-58faed8u/compare_reads.egg-info/dependency_links.txt
2021-07-14T07:32:43,257     writing requirements to /tmp/pip-pip-egg-info-58faed8u/compare_reads.egg-info/requires.txt
2021-07-14T07:32:43,258     writing top-level names to /tmp/pip-pip-egg-info-58faed8u/compare_reads.egg-info/top_level.txt
2021-07-14T07:32:43,259     writing manifest file '/tmp/pip-pip-egg-info-58faed8u/compare_reads.egg-info/SOURCES.txt'
2021-07-14T07:32:43,440     reading manifest file '/tmp/pip-pip-egg-info-58faed8u/compare_reads.egg-info/SOURCES.txt'
2021-07-14T07:32:43,442     reading manifest template 'MANIFEST.in'
2021-07-14T07:32:43,455     warning: no files found matching 'appveyor.yml'
2021-07-14T07:32:43,456     warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2021-07-14T07:32:43,456     warning: no previously-included files matching '__pycache__' found anywhere in distribution
2021-07-14T07:32:43,457     warning: no previously-included files matching '*.so' found anywhere in distribution
2021-07-14T07:32:43,457     warning: no previously-included files matching '*.dylib' found anywhere in distribution
2021-07-14T07:32:43,458     adding license file 'LICENSE'
2021-07-14T07:32:43,458     adding license file 'AUTHORS.rst'
2021-07-14T07:32:43,461     writing manifest file '/tmp/pip-pip-egg-info-58faed8u/compare_reads.egg-info/SOURCES.txt'
2021-07-14T07:32:43,549   Source in /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0 has version 0.0.0, which satisfies requirement compare-reads==0.0.0 from https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz#sha256=ebcb6182d4d125cbf45bf64188e806c5bb79c72691c578fc2d9d5088b554665e
2021-07-14T07:32:43,550   Removed compare-reads==0.0.0 from https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz#sha256=ebcb6182d4d125cbf45bf64188e806c5bb79c72691c578fc2d9d5088b554665e from build tracker '/tmp/pip-req-tracker-o52t4lfx'
2021-07-14T07:32:43,562 Created temporary directory: /tmp/pip-unpack-1fj1bnge
2021-07-14T07:32:43,562 Building wheels for collected packages: compare-reads
2021-07-14T07:32:43,566   Created temporary directory: /tmp/pip-wheel-xejdue1v
2021-07-14T07:32:43,566   Building wheel for compare-reads (setup.py): started
2021-07-14T07:32:43,567   Destination directory: /tmp/pip-wheel-xejdue1v
2021-07-14T07:32:43,567   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-xejdue1v
2021-07-14T07:32:45,313   running bdist_wheel
2021-07-14T07:32:45,318   running build
2021-07-14T07:32:45,318   running build_py
2021-07-14T07:32:45,458   creating build
2021-07-14T07:32:45,458   creating build/lib.linux-armv7l-3.9
2021-07-14T07:32:45,459   creating build/lib.linux-armv7l-3.9/compare_reads
2021-07-14T07:32:45,460   copying src/compare_reads/__init__.py -> build/lib.linux-armv7l-3.9/compare_reads
2021-07-14T07:32:45,461   running egg_info
2021-07-14T07:32:45,465   writing src/compare_reads.egg-info/PKG-INFO
2021-07-14T07:32:45,466   writing dependency_links to src/compare_reads.egg-info/dependency_links.txt
2021-07-14T07:32:45,468   writing requirements to src/compare_reads.egg-info/requires.txt
2021-07-14T07:32:45,469   writing top-level names to src/compare_reads.egg-info/top_level.txt
2021-07-14T07:32:45,506   reading manifest file 'src/compare_reads.egg-info/SOURCES.txt'
2021-07-14T07:32:45,509   reading manifest template 'MANIFEST.in'
2021-07-14T07:32:45,516   warning: no files found matching 'appveyor.yml'
2021-07-14T07:32:45,517   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2021-07-14T07:32:45,518   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2021-07-14T07:32:45,518   warning: no previously-included files matching '*.so' found anywhere in distribution
2021-07-14T07:32:45,519   warning: no previously-included files matching '*.dylib' found anywhere in distribution
2021-07-14T07:32:45,519   adding license file 'LICENSE'
2021-07-14T07:32:45,519   adding license file 'AUTHORS.rst'
2021-07-14T07:32:45,523   writing manifest file 'src/compare_reads.egg-info/SOURCES.txt'
2021-07-14T07:32:45,526   copying src/compare_reads/_compare_reads.c -> build/lib.linux-armv7l-3.9/compare_reads
2021-07-14T07:32:45,533   copying src/compare_reads/_compare_reads.pxd -> build/lib.linux-armv7l-3.9/compare_reads
2021-07-14T07:32:45,535   copying src/compare_reads/_compare_reads.pyx -> build/lib.linux-armv7l-3.9/compare_reads
2021-07-14T07:32:45,537   copying src/compare_reads/strnum_cmp.c -> build/lib.linux-armv7l-3.9/compare_reads
2021-07-14T07:32:45,540   running build_ext
2021-07-14T07:32:45,704   skipping 'src/compare_reads/_compare_reads.c' Cython extension (up-to-date)
2021-07-14T07:32:45,704   building 'compare_reads._compare_reads' extension
2021-07-14T07:32:45,705   creating build/temp.linux-armv7l-3.9
2021-07-14T07:32:45,705   creating build/temp.linux-armv7l-3.9/src
2021-07-14T07:32:45,706   creating build/temp.linux-armv7l-3.9/src/compare_reads
2021-07-14T07:32:45,707   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/compare_reads -I/usr/include/python3.9 -I/tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam -I/tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib -I/tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/samtools -c src/compare_reads/_compare_reads.c -o build/temp.linux-armv7l-3.9/src/compare_reads/_compare_reads.o
2021-07-14T07:32:46,128   In file included from /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/vcf.h:43,
2021-07-14T07:32:46,129                    from /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/htslib_util.h:5,
2021-07-14T07:32:46,129                    from src/compare_reads/_compare_reads.c:598:
2021-07-14T07:32:46,129   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/hts_endian.h: In function ‘le_to_i32’:
2021-07-14T07:32:46,129   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/hts_endian.h:245:34: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
2021-07-14T07:32:46,129     245 |     return v < 0x80000000U ? v : -((int32_t) (0xffffffffU - v)) - 1;
2021-07-14T07:32:46,130         |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,130   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/hts_endian.h: In function ‘le_to_i64’:
2021-07-14T07:32:46,130   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/hts_endian.h:257:19: warning: operand of ‘?:’ changes signedness from ‘long long int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
2021-07-14T07:32:46,130     257 |             ? v : -((int64_t) (0xffffffffffffffffULL - v)) - 1);
2021-07-14T07:32:46,130         |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,153   In file included from src/compare_reads/_compare_reads.c:599:
2021-07-14T07:32:46,153   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/hfile.h: In function ‘hwrite’:
2021-07-14T07:32:46,153   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/hfile.h:271:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-14T07:32:46,153     271 |         if (fp->limit - fp->begin < nbytes){
2021-07-14T07:32:46,154         |                                   ^
2021-07-14T07:32:46,230   src/compare_reads/_compare_reads.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-14T07:32:46,232   src/compare_reads/_compare_reads.c:3960:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,232    3960 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,233         |                     ^
2021-07-14T07:32:46,233   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,233                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,233                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,233   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:32:46,233     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:32:46,233         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,235   src/compare_reads/_compare_reads.c:3960:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,235    3960 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,235         |                     ^
2021-07-14T07:32:46,235   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,236                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,236                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,236   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T07:32:46,236     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T07:32:46,236         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,237   src/compare_reads/_compare_reads.c:3960:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,237    3960 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,237         |                     ^
2021-07-14T07:32:46,238   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,238                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,238                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,238   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:32:46,238     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:32:46,238         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,239   src/compare_reads/_compare_reads.c:3960:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,240    3960 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,240         |                     ^
2021-07-14T07:32:46,240   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,240                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,240                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,240   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:32:46,240     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:32:46,240         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,242   src/compare_reads/_compare_reads.c:3960:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,242    3960 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,242         |                     ^
2021-07-14T07:32:46,242   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,242                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,242                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,242   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T07:32:46,242     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T07:32:46,242         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,244   src/compare_reads/_compare_reads.c:3960:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,244    3960 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,244         |                     ^
2021-07-14T07:32:46,244   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,244                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,244                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,245   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:32:46,245     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:32:46,245         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,247   src/compare_reads/_compare_reads.c:3976:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,247    3976 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,247         |                         ^
2021-07-14T07:32:46,247   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,247                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,247                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,247   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:32:46,248     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:32:46,248         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,249   src/compare_reads/_compare_reads.c:3976:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,249    3976 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,249         |                         ^
2021-07-14T07:32:46,249   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,249                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,249                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,250   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T07:32:46,250     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T07:32:46,250         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,251   src/compare_reads/_compare_reads.c:3976:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,251    3976 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,251         |                         ^
2021-07-14T07:32:46,251   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,252                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,252                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,252   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:32:46,252     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:32:46,252         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,253   src/compare_reads/_compare_reads.c:3976:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,253    3976 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,254         |                         ^
2021-07-14T07:32:46,254   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,254                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,254                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,254   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:32:46,254     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:32:46,254         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,255   src/compare_reads/_compare_reads.c:3976:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,256    3976 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,256         |                         ^
2021-07-14T07:32:46,256   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,256                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,256                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,256   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T07:32:46,256     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T07:32:46,256         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,258   src/compare_reads/_compare_reads.c:3976:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:32:46,258    3976 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:32:46,258         |                         ^
2021-07-14T07:32:46,258   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:32:46,258                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:32:46,258                    from src/compare_reads/_compare_reads.c:4:
2021-07-14T07:32:46,258   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:32:46,258     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:32:46,259         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:32:46,336   In file included from /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/pysam_stream.h:4,
2021-07-14T07:32:46,336                    from src/compare_reads/_compare_reads.c:609:
2021-07-14T07:32:46,336   At top level:
2021-07-14T07:32:46,337   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:199:12: warning: ‘kseq_read’ defined but not used [-Wunused-function]
2021-07-14T07:32:46,337     199 |  SCOPE int kseq_read(kseq_t *seq) \
2021-07-14T07:32:46,337         |            ^~~~~~~~~
2021-07-14T07:32:46,337   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:251:2: note: in expansion of macro ‘__KSEQ_READ’
2021-07-14T07:32:46,337     251 |  __KSEQ_READ(SCOPE)
2021-07-14T07:32:46,338         |  ^~~~~~~~~~~
2021-07-14T07:32:46,338   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:253:35: note: in expansion of macro ‘KSEQ_INIT2’
2021-07-14T07:32:46,338     253 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2021-07-14T07:32:46,338         |                                   ^~~~~~~~~~
2021-07-14T07:32:46,338   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2021-07-14T07:32:46,338       9 | KSEQ_INIT(BGZF *, bgzf_read)
2021-07-14T07:32:46,338         | ^~~~~~~~~
2021-07-14T07:32:46,338   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:185:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
2021-07-14T07:32:46,339     185 |  SCOPE void kseq_destroy(kseq_t *ks)         \
2021-07-14T07:32:46,339         |             ^~~~~~~~~~~~
2021-07-14T07:32:46,339   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:250:2: note: in expansion of macro ‘__KSEQ_BASIC’
2021-07-14T07:32:46,339     250 |  __KSEQ_BASIC(SCOPE, type_t)     \
2021-07-14T07:32:46,340         |  ^~~~~~~~~~~~
2021-07-14T07:32:46,340   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:253:35: note: in expansion of macro ‘KSEQ_INIT2’
2021-07-14T07:32:46,340     253 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2021-07-14T07:32:46,340         |                                   ^~~~~~~~~~
2021-07-14T07:32:46,341   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2021-07-14T07:32:46,341       9 | KSEQ_INIT(BGZF *, bgzf_read)
2021-07-14T07:32:46,341         | ^~~~~~~~~
2021-07-14T07:32:46,341   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:179:16: warning: ‘kseq_init’ defined but not used [-Wunused-function]
2021-07-14T07:32:46,341     179 |  SCOPE kseq_t *kseq_init(type_t fd)         \
2021-07-14T07:32:46,341         |                ^~~~~~~~~
2021-07-14T07:32:46,341   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:250:2: note: in expansion of macro ‘__KSEQ_BASIC’
2021-07-14T07:32:46,341     250 |  __KSEQ_BASIC(SCOPE, type_t)     \
2021-07-14T07:32:46,342         |  ^~~~~~~~~~~~
2021-07-14T07:32:46,342   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:253:35: note: in expansion of macro ‘KSEQ_INIT2’
2021-07-14T07:32:46,342     253 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2021-07-14T07:32:46,342         |                                   ^~~~~~~~~~
2021-07-14T07:32:46,342   /tmp/pip-wheel-1wg6kx45/compare-reads_0ea784feb18a4eb5859cc143cc2ab9e0/.eggs/pysam-0.16.0.1-py3.9-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2021-07-14T07:32:46,342       9 | KSEQ_INIT(BGZF *, bgzf_read)
2021-07-14T07:32:46,342         | ^~~~~~~~~
2021-07-14T07:32:47,883   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/compare_reads/_compare_reads.o -o build/lib.linux-armv7l-3.9/compare_reads/_compare_reads.cpython-39-arm-linux-gnueabihf.so
2021-07-14T07:32:48,005   installing to build/bdist.linux-armv7l/wheel
2021-07-14T07:32:48,005   running install
2021-07-14T07:32:48,006   running install_lib
2021-07-14T07:32:48,011   creating build/bdist.linux-armv7l
2021-07-14T07:32:48,011   creating build/bdist.linux-armv7l/wheel
2021-07-14T07:32:48,013   creating build/bdist.linux-armv7l/wheel/compare_reads
2021-07-14T07:32:48,015   copying build/lib.linux-armv7l-3.9/compare_reads/_compare_reads.pyx -> build/bdist.linux-armv7l/wheel/compare_reads
2021-07-14T07:32:48,017   copying build/lib.linux-armv7l-3.9/compare_reads/strnum_cmp.c -> build/bdist.linux-armv7l/wheel/compare_reads
2021-07-14T07:32:48,019   copying build/lib.linux-armv7l-3.9/compare_reads/_compare_reads.c -> build/bdist.linux-armv7l/wheel/compare_reads
2021-07-14T07:32:48,028   copying build/lib.linux-armv7l-3.9/compare_reads/__init__.py -> build/bdist.linux-armv7l/wheel/compare_reads
2021-07-14T07:32:48,031   copying build/lib.linux-armv7l-3.9/compare_reads/_compare_reads.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/compare_reads
2021-07-14T07:32:48,037   copying build/lib.linux-armv7l-3.9/compare_reads/_compare_reads.pxd -> build/bdist.linux-armv7l/wheel/compare_reads
2021-07-14T07:32:48,039   running install_egg_info
2021-07-14T07:32:48,045   Copying src/compare_reads.egg-info to build/bdist.linux-armv7l/wheel/compare_reads-0.0.0-py3.9.egg-info
2021-07-14T07:32:48,061   running install_scripts
2021-07-14T07:32:48,156   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-14T07:32:48,158   adding license file "AUTHORS.rst" (matched pattern "AUTHORS*")
2021-07-14T07:32:48,163   creating build/bdist.linux-armv7l/wheel/compare_reads-0.0.0.dist-info/WHEEL
2021-07-14T07:32:48,166   creating '/tmp/pip-wheel-xejdue1v/compare_reads-0.0.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T07:32:48,169   adding 'compare_reads/__init__.py'
2021-07-14T07:32:48,189   adding 'compare_reads/_compare_reads.c'
2021-07-14T07:32:48,216   adding 'compare_reads/_compare_reads.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T07:32:48,219   adding 'compare_reads/_compare_reads.pxd'
2021-07-14T07:32:48,220   adding 'compare_reads/_compare_reads.pyx'
2021-07-14T07:32:48,222   adding 'compare_reads/strnum_cmp.c'
2021-07-14T07:32:48,224   adding 'compare_reads-0.0.0.dist-info/AUTHORS.rst'
2021-07-14T07:32:48,225   adding 'compare_reads-0.0.0.dist-info/LICENSE'
2021-07-14T07:32:48,227   adding 'compare_reads-0.0.0.dist-info/METADATA'
2021-07-14T07:32:48,228   adding 'compare_reads-0.0.0.dist-info/WHEEL'
2021-07-14T07:32:48,229   adding 'compare_reads-0.0.0.dist-info/top_level.txt'
2021-07-14T07:32:48,230   adding 'compare_reads-0.0.0.dist-info/RECORD'
2021-07-14T07:32:48,232   removing build/bdist.linux-armv7l/wheel
2021-07-14T07:32:48,335   Building wheel for compare-reads (setup.py): finished with status 'done'
2021-07-14T07:32:48,338   Created wheel for compare-reads: filename=compare_reads-0.0.0-cp39-cp39-linux_armv7l.whl size=92321 sha256=c339bf70f7618bbdb367cba8a19760a7489fbddce98d940870cdcd93a0c747da
2021-07-14T07:32:48,338   Stored in directory: /tmp/pip-ephem-wheel-cache-u6fsn4_5/wheels/2a/25/c6/151a5af9e80c2c25b553eb4b6b1c6aee96ce31fca64d3564f0
2021-07-14T07:32:48,347 Successfully built compare-reads
2021-07-14T07:32:48,352 Removed build tracker: '/tmp/pip-req-tracker-o52t4lfx'