2021-07-14T07:48:26,959 Created temporary directory: /tmp/pip-ephem-wheel-cache-38lfychl
2021-07-14T07:48:26,963 Created temporary directory: /tmp/pip-req-tracker-ub084elr
2021-07-14T07:48:26,963 Initialized build tracking at /tmp/pip-req-tracker-ub084elr
2021-07-14T07:48:26,963 Created build tracker: /tmp/pip-req-tracker-ub084elr
2021-07-14T07:48:26,963 Entered build tracker: /tmp/pip-req-tracker-ub084elr
2021-07-14T07:48:26,964 Created temporary directory: /tmp/pip-wheel-ukq50q_i
2021-07-14T07:48:26,996 1 location(s) to search for versions of adaptivepele:
2021-07-14T07:48:26,996 * https://pypi.org/simple/adaptivepele/
2021-07-14T07:48:26,997 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/
2021-07-14T07:48:26,997 Getting page https://pypi.org/simple/adaptivepele/
2021-07-14T07:48:26,999 Found index url https://pypi.org/simple
2021-07-14T07:48:27,096   Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2021-07-14T07:48:27,096   Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2021-07-14T07:48:27,097   Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2021-07-14T07:48:27,097   Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2021-07-14T07:48:27,097   Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 (from https://pypi.org/simple/adaptivepele/), version: 1.6.3
2021-07-14T07:48:27,098   Found link https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb (from https://pypi.org/simple/adaptivepele/), version: 1.7
2021-07-14T07:48:27,098   Found link https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 (from https://pypi.org/simple/adaptivepele/), version: 1.7.1
2021-07-14T07:48:27,099 Skipping link: not a file: https://pypi.org/simple/adaptivepele/
2021-07-14T07:48:27,118 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates
2021-07-14T07:48:27,138 Collecting adaptivepele==1.6
2021-07-14T07:48:27,140   Created temporary directory: /tmp/pip-unpack-_6zv36wq
2021-07-14T07:48:27,200   Downloading AdaptivePELE-1.6.tar.gz (4.5 MB)
2021-07-14T07:48:28,760   Added adaptivepele==1.6 from https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 to build tracker '/tmp/pip-req-tracker-ub084elr'
2021-07-14T07:48:28,762     Running setup.py (path:/tmp/pip-wheel-ukq50q_i/adaptivepele_9f07ec38a8094664bea42647ec696139/setup.py) egg_info for package adaptivepele
2021-07-14T07:48:28,763     Created temporary directory: /tmp/pip-pip-egg-info-d0nwlt2s
2021-07-14T07:48:28,763     Running command python setup.py egg_info
2021-07-14T07:48:30,433     Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-14T07:48:30,554     running egg_info
2021-07-14T07:48:30,556     creating /tmp/pip-pip-egg-info-d0nwlt2s/AdaptivePELE.egg-info
2021-07-14T07:48:30,557     writing /tmp/pip-pip-egg-info-d0nwlt2s/AdaptivePELE.egg-info/PKG-INFO
2021-07-14T07:48:30,560     writing dependency_links to /tmp/pip-pip-egg-info-d0nwlt2s/AdaptivePELE.egg-info/dependency_links.txt
2021-07-14T07:48:30,562     writing requirements to /tmp/pip-pip-egg-info-d0nwlt2s/AdaptivePELE.egg-info/requires.txt
2021-07-14T07:48:30,563     writing top-level names to /tmp/pip-pip-egg-info-d0nwlt2s/AdaptivePELE.egg-info/top_level.txt
2021-07-14T07:48:30,564     writing manifest file '/tmp/pip-pip-egg-info-d0nwlt2s/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-14T07:48:30,726     reading manifest file '/tmp/pip-pip-egg-info-d0nwlt2s/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-14T07:48:30,727     reading manifest template 'MANIFEST.in'
2021-07-14T07:48:30,771     writing manifest file '/tmp/pip-pip-egg-info-d0nwlt2s/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-14T07:48:30,892   Source in /tmp/pip-wheel-ukq50q_i/adaptivepele_9f07ec38a8094664bea42647ec696139 has version 1.6, which satisfies requirement adaptivepele==1.6 from https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5
2021-07-14T07:48:30,893   Removed adaptivepele==1.6 from https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 from build tracker '/tmp/pip-req-tracker-ub084elr'
2021-07-14T07:48:30,897 Created temporary directory: /tmp/pip-unpack-k0w8bo9k
2021-07-14T07:48:30,898 Building wheels for collected packages: adaptivepele
2021-07-14T07:48:30,902   Created temporary directory: /tmp/pip-wheel-84onne9c
2021-07-14T07:48:30,903   Building wheel for adaptivepele (setup.py): started
2021-07-14T07:48:30,903   Destination directory: /tmp/pip-wheel-84onne9c
2021-07-14T07:48:30,904   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ukq50q_i/adaptivepele_9f07ec38a8094664bea42647ec696139/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ukq50q_i/adaptivepele_9f07ec38a8094664bea42647ec696139/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-84onne9c
2021-07-14T07:48:32,491   Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-14T07:48:32,629   running bdist_wheel
2021-07-14T07:48:32,635   running build
2021-07-14T07:48:32,635   running build_py
2021-07-14T07:48:32,776   creating build
2021-07-14T07:48:32,776   creating build/lib.linux-armv7l-3.9
2021-07-14T07:48:32,777   creating build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T07:48:32,778   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T07:48:32,780   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T07:48:32,782   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T07:48:32,784   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T07:48:32,786   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T07:48:32,789   creating build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T07:48:32,790   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T07:48:32,792   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T07:48:32,794   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T07:48:32,796   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T07:48:32,799   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T07:48:32,802   creating build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T07:48:32,803   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T07:48:32,805   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T07:48:32,807   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T07:48:32,810   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T07:48:32,813   creating build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T07:48:32,814   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T07:48:32,816   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T07:48:32,818   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T07:48:32,823   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T07:48:32,827   creating build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T07:48:32,828   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T07:48:32,830   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T07:48:32,831   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T07:48:32,834   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T07:48:32,839   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T07:48:32,841   creating build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-14T07:48:32,842   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-14T07:48:32,844   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-14T07:48:32,849   creating build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,849   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,852   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,854   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,857   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,859   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,861   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,864   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,866   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,868   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,870   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,873   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,876   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,878   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,879   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,881   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,884   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,887   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,889   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,891   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,893   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,895   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,898   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,900   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,902   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,904   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,906   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,908   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,910   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,913   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,915   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,918   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,920   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,923   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,925   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T07:48:32,929   creating build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,929   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,932   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,936   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,938   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,941   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,942   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,945   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,947   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,949   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,951   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T07:48:32,956   creating build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,957   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,959   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,962   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,964   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,967   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,970   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,972   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,974   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,976   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,978   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,981   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,983   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,986   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,989   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,991   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,993   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:32,995   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T07:48:33,000   creating build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T07:48:33,001   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T07:48:33,004   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T07:48:33,006   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T07:48:33,008   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T07:48:33,011   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T07:48:33,015   creating build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-14T07:48:33,016   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-14T07:48:33,019   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-14T07:48:33,021   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-14T07:48:33,035   running build_ext
2021-07-14T07:48:33,040   skipping 'AdaptivePELE/atomset/atomset.c' Cython extension (up-to-date)
2021-07-14T07:48:33,041   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2021-07-14T07:48:33,041   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2021-07-14T07:48:33,041   skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
2021-07-14T07:48:33,042   building 'AdaptivePELE.atomset.atomset' extension
2021-07-14T07:48:33,042   creating build/temp.linux-armv7l-3.9
2021-07-14T07:48:33,043   creating build/temp.linux-armv7l-3.9/AdaptivePELE
2021-07-14T07:48:33,043   creating build/temp.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-14T07:48:33,044   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/atomset.o
2021-07-14T07:48:33,542   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T07:48:33,542                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T07:48:33,542                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T07:48:33,542                    from AdaptivePELE/atomset/atomset.c:610:
2021-07-14T07:48:33,543   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T07:48:33,543      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T07:48:33,543         |  ^~~~~~~
2021-07-14T07:48:34,251   AdaptivePELE/atomset/atomset.c: In function ‘__Pyx_modinit_type_init_code’:
2021-07-14T07:48:34,264   AdaptivePELE/atomset/atomset.c:25021:51: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-14T07:48:34,264   25021 |   __pyx_type_12AdaptivePELE_7atomset_7atomset_Atom.tp_print = 0;
2021-07-14T07:48:34,265         |                                                   ^
2021-07-14T07:48:34,278   AdaptivePELE/atomset/atomset.c:25039:50: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-14T07:48:34,278   25039 |   __pyx_type_12AdaptivePELE_7atomset_7atomset_PDB.tp_print = 0;
2021-07-14T07:48:34,278         |                                                  ^
2021-07-14T07:48:34,291   AdaptivePELE/atomset/atomset.c:25057:75: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-14T07:48:34,292   25057 |   __pyx_type_12AdaptivePELE_7atomset_7atomset___pyx_scope_struct____iter__.tp_print = 0;
2021-07-14T07:48:34,292         |                                                                           ^
2021-07-14T07:48:34,460   AdaptivePELE/atomset/atomset.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-14T07:48:34,473   AdaptivePELE/atomset/atomset.c:26661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,473   26661 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,474         |                     ^
2021-07-14T07:48:34,474   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,474                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,474                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,474   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:48:34,475     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:48:34,475         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,490   AdaptivePELE/atomset/atomset.c:26661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,490   26661 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,490         |                     ^
2021-07-14T07:48:34,491   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,491                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,491                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,491   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T07:48:34,491     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T07:48:34,491         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,506   AdaptivePELE/atomset/atomset.c:26661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,507   26661 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,507         |                     ^
2021-07-14T07:48:34,507   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,507                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,507                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,507   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:48:34,508     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:48:34,508         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,523   AdaptivePELE/atomset/atomset.c:26661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,523   26661 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,523         |                     ^
2021-07-14T07:48:34,523   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,523                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,524                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,524   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:48:34,524     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:48:34,524         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,539   AdaptivePELE/atomset/atomset.c:26661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,539   26661 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,539         |                     ^
2021-07-14T07:48:34,540   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,540                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,540                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,540   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T07:48:34,540     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T07:48:34,540         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,555   AdaptivePELE/atomset/atomset.c:26661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,556   26661 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,556         |                     ^
2021-07-14T07:48:34,556   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,556                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,556                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,556   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:48:34,557     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:48:34,557         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,575   AdaptivePELE/atomset/atomset.c:26677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,575   26677 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,575         |                         ^
2021-07-14T07:48:34,575   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,576                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,576                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,576   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:48:34,576     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:48:34,576         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,591   AdaptivePELE/atomset/atomset.c:26677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,591   26677 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,591         |                         ^
2021-07-14T07:48:34,592   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,592                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,592                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,592   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T07:48:34,592     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T07:48:34,592         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,607   AdaptivePELE/atomset/atomset.c:26677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,608   26677 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,608         |                         ^
2021-07-14T07:48:34,608   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,608                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,608                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,608   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:48:34,608     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:48:34,609         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,624   AdaptivePELE/atomset/atomset.c:26677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,624   26677 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,624         |                         ^
2021-07-14T07:48:34,624   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,624                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,624                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,625   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:48:34,625     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:48:34,625         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,640   AdaptivePELE/atomset/atomset.c:26677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,640   26677 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,640         |                         ^
2021-07-14T07:48:34,640   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,641                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,641                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,641   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T07:48:34,641     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T07:48:34,641         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:34,656   AdaptivePELE/atomset/atomset.c:26677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T07:48:34,656   26677 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T07:48:34,657         |                         ^
2021-07-14T07:48:34,657   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T07:48:34,657                    from /usr/include/python3.9/Python.h:97,
2021-07-14T07:48:34,657                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T07:48:34,657   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T07:48:34,657     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T07:48:34,657         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T07:48:36,015   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-14T07:48:36,144   Building wheel for adaptivepele (setup.py): finished with status 'error'
2021-07-14T07:48:36,144   ERROR: Failed building wheel for adaptivepele
2021-07-14T07:48:36,145   Running setup.py clean for adaptivepele
2021-07-14T07:48:36,146   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ukq50q_i/adaptivepele_9f07ec38a8094664bea42647ec696139/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ukq50q_i/adaptivepele_9f07ec38a8094664bea42647ec696139/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-14T07:48:37,749   Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-14T07:48:37,862   running clean
2021-07-14T07:48:37,866   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-14T07:48:37,868   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-14T07:48:37,907   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-14T07:48:37,908   'build/scripts-3.9' does not exist -- can't clean it
2021-07-14T07:48:37,908   removing 'build'
2021-07-14T07:48:38,019 Failed to build adaptivepele
2021-07-14T07:48:38,019 ERROR: Failed to build one or more wheels
2021-07-14T07:48:38,020 Exception information:
2021-07-14T07:48:38,020 Traceback (most recent call last):
2021-07-14T07:48:38,020   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-14T07:48:38,020     status = self.run(options, args)
2021-07-14T07:48:38,020   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-14T07:48:38,020     return func(self, options, args)
2021-07-14T07:48:38,020   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-14T07:48:38,020     raise CommandError(
2021-07-14T07:48:38,020 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-14T07:48:38,023 Removed build tracker: '/tmp/pip-req-tracker-ub084elr'