2021-07-14T10:08:29,781 Created temporary directory: /tmp/pip-ephem-wheel-cache-0nbbajoj
2021-07-14T10:08:29,784 Created temporary directory: /tmp/pip-req-tracker-6hzxi1f8
2021-07-14T10:08:29,784 Initialized build tracking at /tmp/pip-req-tracker-6hzxi1f8
2021-07-14T10:08:29,785 Created build tracker: /tmp/pip-req-tracker-6hzxi1f8
2021-07-14T10:08:29,785 Entered build tracker: /tmp/pip-req-tracker-6hzxi1f8
2021-07-14T10:08:29,786 Created temporary directory: /tmp/pip-wheel-vz71yl7a
2021-07-14T10:08:29,815 1 location(s) to search for versions of transvar:
2021-07-14T10:08:29,815 * https://pypi.org/simple/transvar/
2021-07-14T10:08:29,816 Fetching project page and analyzing links: https://pypi.org/simple/transvar/
2021-07-14T10:08:29,816 Getting page https://pypi.org/simple/transvar/
2021-07-14T10:08:29,818 Found index url https://pypi.org/simple
2021-07-14T10:08:30,018   Found link https://files.pythonhosted.org/packages/08/6c/f47d5c1b30408e08f19c5fbe42e03f57a234057fe1dd4c82a2e908a38a73/TransVar-2.2.3.20160407.tar.gz#sha256=27bf22657693bbe2838de86ffa6727a4e4c306f0f7ecea1fba263f750710bdb9 (from https://pypi.org/simple/transvar/), version: 2.2.3.20160407
2021-07-14T10:08:30,018   Found link https://files.pythonhosted.org/packages/2c/44/b95ffb8f13d8bb611c15adacdcf61cf24e51685cd193b2a1769270183e14/TransVar-2.2.4.20160407.tar.gz#sha256=2a294f5e4280bc91b58220f8cc0b9b106ae1d7561029ac7bf901da6853966ba2 (from https://pypi.org/simple/transvar/), version: 2.2.4.20160407
2021-07-14T10:08:30,018   Found link https://files.pythonhosted.org/packages/d2/5c/083e2ec87dbae164c1ba791cd88f7a14473859980e3f5775a88cb9f18c8d/TransVar-2.2.5.20160408.tar.gz#sha256=d090eff7a0f60e246c21e4fd83ccdd0d96373a927ce8c6086182c20a439ac30d (from https://pypi.org/simple/transvar/), version: 2.2.5.20160408
2021-07-14T10:08:30,019   Found link https://files.pythonhosted.org/packages/2b/7b/f71bd04791a21d7c6c51ed2801b53cfde506c57fcaaa90eff0c0b96cc4bc/TransVar-2.2.6.20160427.tar.gz#sha256=4ee33da13c3830c02b03f8145605cac60068b0766654e95e310f4ed144349773 (from https://pypi.org/simple/transvar/), version: 2.2.6.20160427
2021-07-14T10:08:30,019   Found link https://files.pythonhosted.org/packages/bb/a1/1dd7275f4a930448d1e66a40cc720e505b7cce8dae450dfbc0b73b6fe391/TransVar-2.2.7.20160427.tar.gz#sha256=7dad5ba094c8a2e6d586469b0d1d4293af48457d28e75f41ed43ab212cc530a6 (from https://pypi.org/simple/transvar/), version: 2.2.7.20160427
2021-07-14T10:08:30,019   Found link https://files.pythonhosted.org/packages/d3/df/680fb4f9e32967ef2beb3fdc548eea6f6496eeb25f673f5c4e4c5ed22ef8/TransVar-2.2.8.20160502.tar.gz#sha256=75f39cc413251ca83c6717d6f749fa73b5eba2649e983c51316278c3c58edd12 (from https://pypi.org/simple/transvar/), version: 2.2.8.20160502
2021-07-14T10:08:30,020   Found link https://files.pythonhosted.org/packages/87/4c/00f096288e5b2636dc7cf2a49ea6465649734cfddde6698ee315d2fc5b4a/TransVar-2.2.9.20160503.tar.gz#sha256=74a1b2d79bdfd6bb885e97beac98a577b44e603f4b86215a150f4d9cc95fc4ab (from https://pypi.org/simple/transvar/), version: 2.2.9.20160503
2021-07-14T10:08:30,020   Found link https://files.pythonhosted.org/packages/ee/0f/b340f49b44ef2d0fe305c4e4f44b393a44af7d64e5d6ccc9dc9464887e32/TransVar-2.2.10.20160512.tar.gz#sha256=8e4214c1f4576c04f8a0cb4655d5396a4adcb3cab2f2e928e4cb77ad5228d21c (from https://pypi.org/simple/transvar/), version: 2.2.10.20160512
2021-07-14T10:08:30,020   Found link https://files.pythonhosted.org/packages/57/b1/34e879cdcc60d291102d0634efbc6bcc588f8af5052009c8943a8755c968/TransVar-2.2.11.20160531.tar.gz#sha256=1c57be88b89907ba50013d2d17ec302668e12753e272e31007880a2ec3a8a688 (from https://pypi.org/simple/transvar/), version: 2.2.11.20160531
2021-07-14T10:08:30,020   Found link https://files.pythonhosted.org/packages/0e/e2/86c1e324c0af3086c36628c7b94caf19547b18560ea667d28825f8f57ae3/TransVar-2.2.12.20160723.tar.gz#sha256=f1c971a97bbf68c1a64252f69d4b4691b4ebb0e1d336640bda269d98121ca67f (from https://pypi.org/simple/transvar/), version: 2.2.12.20160723
2021-07-14T10:08:30,021   Found link https://files.pythonhosted.org/packages/d1/fe/a13f91f948c3e89d08e0a8acb2eadf0759cbc816a57456196736218b46ce/TransVar-2.2.13.20160723.tar.gz#sha256=c1eb71665b97deaa83774f580c15ce5f693f8d218c18477c7306477c6d52882f (from https://pypi.org/simple/transvar/), version: 2.2.13.20160723
2021-07-14T10:08:30,021   Found link https://files.pythonhosted.org/packages/fb/f4/02b249106131830b0bb00c0b10b15a10ded8f03077da8bccd72d2c8a7366/TransVar-2.2.14.20161002.tar.gz#sha256=24766b603215c39ebc0d7c1584cc410456da3dda9a1c6a1f0cafe3179dd2274f (from https://pypi.org/simple/transvar/), version: 2.2.14.20161002
2021-07-14T10:08:30,021   Found link https://files.pythonhosted.org/packages/9b/02/2d7ef5f0bbf746e2f4781ccb3d24822af377b188b9dbbee30cec829fa487/TransVar-2.2.15.20161002.tar.gz#sha256=1269266786af0cabc769151e16f649d33aad38003b8f67cb0a76724cdf107495 (from https://pypi.org/simple/transvar/), version: 2.2.15.20161002
2021-07-14T10:08:30,021   Found link https://files.pythonhosted.org/packages/19/d8/a0c36f428d8acca26cc8bce1f8aa79a7597db4f05c79c8d2943fe9b153fc/TransVar-2.3.0.20161007.tar.gz#sha256=591a4ceb0ae9b89354db3ffee8f05213adf093cecc5acdabb4e058a27210812d (from https://pypi.org/simple/transvar/), version: 2.3.0.20161007
2021-07-14T10:08:30,022   Found link https://files.pythonhosted.org/packages/5a/06/25e17459a69dfe3545ec60e9bcb25352c8b7507b69dcd7d91231b347362e/TransVar-2.3.1.20161012.tar.gz#sha256=dc64d725403c09e5a47efd7b271e7cb127400628c37f3c46f5e6fc9014334f07 (from https://pypi.org/simple/transvar/), version: 2.3.1.20161012
2021-07-14T10:08:30,022   Found link https://files.pythonhosted.org/packages/ec/a4/7f39c4bdd55034793debeb843b84bb3a4a1772af2ad4853e233aa3bfae7b/TransVar-2.3.2.20161106.tar.gz#sha256=2f3aaf496fba664c40abbd3b70cd7d538ae73724fcaffe5e4742944c31b06a30 (from https://pypi.org/simple/transvar/), version: 2.3.2.20161106
2021-07-14T10:08:30,022   Found link https://files.pythonhosted.org/packages/f0/28/2bd84a4700ef07a998e80e9ad09f7180f4758f68077d854a8541b6b31143/TransVar-2.3.3.20161203.tar.gz#sha256=a99e0a9a4db36c2414b629f514aefceae1679db0eb31fea0e5de2313f21f2455 (from https://pypi.org/simple/transvar/), version: 2.3.3.20161203
2021-07-14T10:08:30,023   Found link https://files.pythonhosted.org/packages/bc/b3/a0c9a2edf84c397fbf5a6624ddec2f9f961c2b79e070589c361781257111/TransVar-2.3.4.20161215.tar.gz#sha256=42a22a8c29010cbecda8565021f1fd3064024201353869c865e466c28c4ffba2 (from https://pypi.org/simple/transvar/), version: 2.3.4.20161215
2021-07-14T10:08:30,023   Found link https://files.pythonhosted.org/packages/5c/34/222a51489e07dcad5f29f78cee8e0f8e74b1b8b21cd7bb6d12dd2573129d/TransVar-2.4.0.20180701.tar.gz#sha256=b8be2878cf4b8da08df31d3c045de8822eb44d38ed598992e4bb89a4b27ea33e (from https://pypi.org/simple/transvar/), version: 2.4.0.20180701
2021-07-14T10:08:30,023   Found link https://files.pythonhosted.org/packages/06/41/dfa097486b76d3d8351d5fe4599e0b69ad71cfda1d739d8cd98faa4efaf6/TransVar-2.4.1.20180815.tar.gz#sha256=00a808b26850f2bdbe1ba6d986b7dd6d03d2f9fae483de297e8e591d3d6a9f9b (from https://pypi.org/simple/transvar/), version: 2.4.1.20180815
2021-07-14T10:08:30,023   Found link https://files.pythonhosted.org/packages/4b/a2/9a02c155404499b4baac5d5bc7fa994ca77101238e544967a6a612bebefb/TransVar-2.4.2.20181231.linux-x86_64.tar.gz#sha256=bc44449d882eeeb16d257d71f2b4684be35759d8dcc795f4a0f4619510c7d7a4 (from https://pypi.org/simple/transvar/), version: 2.4.2.20181231.linux-x86_64
2021-07-14T10:08:30,024   Found link https://files.pythonhosted.org/packages/e3/2c/24dd2011bdbbae662607eaf3bb98dc4671d2ca97863adfbe1a0979e44b7c/TransVar-2.4.3.20181231.macosx-10.7-x86_64.tar.gz#sha256=8852309cecb3f9becf54055398d8b0744cfd1d7eff9ead714f088553928f6b99 (from https://pypi.org/simple/transvar/), version: 2.4.3.20181231.macosx-10.7-x86_64
2021-07-14T10:08:30,024   Found link https://files.pythonhosted.org/packages/a8/00/d435ffe1c3ef6122be1c0b159b09844ea00e26c283a200ffeabd86b1b9e5/TransVar-2.4.5.20190121.linux-x86_64.tar.gz#sha256=f7ac58d28e76b9a670f960bd048df6ef587ba838f2a175f18e411bd691e10909 (from https://pypi.org/simple/transvar/), version: 2.4.5.20190121.linux-x86_64
2021-07-14T10:08:30,025   Found link https://files.pythonhosted.org/packages/e5/bb/05b86cb6a1785fefad9c6fa49647c2fca8a5af25622285bc9a7858d313fe/TransVar-2.4.6.20190121.tar.gz#sha256=9a66984fca432a9dc539aade12f50c7ccb7c55ac8baf5fe0c7a3e9d30d66cd61 (from https://pypi.org/simple/transvar/), version: 2.4.6.20190121
2021-07-14T10:08:30,025   Found link https://files.pythonhosted.org/packages/b4/2a/981908e0b8034e128753a08697d1693342e35c262ac9801384db7c3f67dc/TransVar-2.4.7.20190122.tar.gz#sha256=d7bc939776837ae60aadee9f7bac3880c02b09355c3e547275cc5167aafac4bc (from https://pypi.org/simple/transvar/), version: 2.4.7.20190122
2021-07-14T10:08:30,025   Found link https://files.pythonhosted.org/packages/59/c0/9367847eb7367bec582f0878a199f102667c7d16bd2a8fc74d1e750d2b28/TransVar-2.4.8.20190122.tar.gz#sha256=8452cdf719609ce816b4713c4d499eae5e5e9e322a68db67d7a57f6628c8be13 (from https://pypi.org/simple/transvar/), version: 2.4.8.20190122
2021-07-14T10:08:30,025   Found link https://files.pythonhosted.org/packages/b4/07/5354a402238297ebc687a5a64df3acced1e8c7a550cb8366f0cc597728bd/TransVar-2.5.0.20190314.tar.gz#sha256=7327c03076f3a96b3b76c53af030d3f360ae74f67036ba773d57a95475288c12 (from https://pypi.org/simple/transvar/), version: 2.5.0.20190314
2021-07-14T10:08:30,026   Found link https://files.pythonhosted.org/packages/59/d6/2905c05c60e0d50545825a2cc6affafddb5d22ceea996c7d89c9cbad82de/TransVar-2.5.1.20190326.tar.gz#sha256=ff1e9d2aa95628f6dbc8e80fe6f0e6f8ce21a7d6029717c5455ca73ebeaef21e (from https://pypi.org/simple/transvar/), version: 2.5.1.20190326
2021-07-14T10:08:30,026   Found link https://files.pythonhosted.org/packages/aa/ee/db5408c9dd1f8fda18cc47d4a59f8b6452a0b423036c11fb8094d3b8c4b1/TransVar-2.5.2.20190401.tar.gz#sha256=ab5f04b5d88862f42c2da86a5ee90d8a3e45d35c9795629949b6ca7f3d736a1c (from https://pypi.org/simple/transvar/), version: 2.5.2.20190401
2021-07-14T10:08:30,026   Found link https://files.pythonhosted.org/packages/0f/d1/23d5e5144a7827d866608e83f2a50708a81fc0adf035399fbe2e3f27f269/TransVar-2.5.3.20190424.tar.gz#sha256=1234f5aa1f6a28a22637acbb9d5881ca9ac7cadea264a54ee7067c72b6352545 (from https://pypi.org/simple/transvar/), version: 2.5.3.20190424
2021-07-14T10:08:30,027   Found link https://files.pythonhosted.org/packages/6b/0d/54c1aedb8dc212405906f0de57c59dc3b4886648f0778453ffc419fcb3ae/TransVar-2.5.4.20190424.tar.gz#sha256=2101e899952101bbef5e9ef10ee7a00b64e38d56b59c52cafc982f22f0c0c0e4 (from https://pypi.org/simple/transvar/), version: 2.5.4.20190424
2021-07-14T10:08:30,027   Found link https://files.pythonhosted.org/packages/00/53/c95a1a2ceb64819124d248268e47bb49f3083e7b7303579dc82fe7e8b63f/TransVar-2.5.5.20190430.tar.gz#sha256=498ca91abcc142cc02f232641ed0ba35202977874aba19ccdfdac3567fcc17e6 (from https://pypi.org/simple/transvar/), version: 2.5.5.20190430
2021-07-14T10:08:30,027   Found link https://files.pythonhosted.org/packages/98/75/2a931b2024578b9e983478b8e5dc9c8a97d17abd853d61764eebc8899c6a/TransVar-2.5.6.20190605.tar.gz#sha256=b73e31142c15b69503bc9d89eb5879772d733e9ed385aefc47dc23b5e42719e2 (from https://pypi.org/simple/transvar/), version: 2.5.6.20190605
2021-07-14T10:08:30,027   Found link https://files.pythonhosted.org/packages/69/3b/ace0d9d8535fecba01f3ad0889616325acac49a14f48e88ad4f0fcae867b/TransVar-2.5.7.20190617.tar.gz#sha256=3cdb92f83becb9b8830edc161cf9e3af3c71c351d4e6abc09ae3c77ef50af966 (from https://pypi.org/simple/transvar/), version: 2.5.7.20190617
2021-07-14T10:08:30,028   Found link https://files.pythonhosted.org/packages/90/2a/c79f2efcef9d5d4ef7be668b76359baa7342ace17e5f864f5e3800c6b288/TransVar-2.5.8.20190813.tar.gz#sha256=16e827afca1059b1ba11f6d58dfca92527288096684050ccd3819d5524f3fc6b (from https://pypi.org/simple/transvar/), version: 2.5.8.20190813
2021-07-14T10:08:30,028   Found link https://files.pythonhosted.org/packages/99/89/e759694b24f6a9d74049e8dd66bd9194e54e4bb97effbca4c69dff9f9046/TransVar-2.5.9.20190830.tar.gz#sha256=9fd7955adb6d71c3c22fdcf20cbe634558557fe5423492c2b797d7904db95fc1 (from https://pypi.org/simple/transvar/), version: 2.5.9.20190830
2021-07-14T10:08:30,028 Skipping link: not a file: https://pypi.org/simple/transvar/
2021-07-14T10:08:30,051 Given no hashes to check 1 links for project 'transvar': discarding no candidates
2021-07-14T10:08:30,072 Collecting transvar==2.5.0.20190314
2021-07-14T10:08:30,074   Created temporary directory: /tmp/pip-unpack-z73uuxaq
2021-07-14T10:08:30,136   Downloading TransVar-2.5.0.20190314.tar.gz (142 kB)
2021-07-14T10:08:30,314   Added transvar==2.5.0.20190314 from https://files.pythonhosted.org/packages/b4/07/5354a402238297ebc687a5a64df3acced1e8c7a550cb8366f0cc597728bd/TransVar-2.5.0.20190314.tar.gz#sha256=7327c03076f3a96b3b76c53af030d3f360ae74f67036ba773d57a95475288c12 to build tracker '/tmp/pip-req-tracker-6hzxi1f8'
2021-07-14T10:08:30,315     Running setup.py (path:/tmp/pip-wheel-vz71yl7a/transvar_5b70245e72d048eabdffd5e28da4c6a0/setup.py) egg_info for package transvar
2021-07-14T10:08:30,315     Created temporary directory: /tmp/pip-pip-egg-info-r_nz9g6d
2021-07-14T10:08:30,316     Running command python setup.py egg_info
2021-07-14T10:08:31,417     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T10:08:31,418       warnings.warn(
2021-07-14T10:08:31,516     running egg_info
2021-07-14T10:08:31,519     creating /tmp/pip-pip-egg-info-r_nz9g6d/TransVar.egg-info
2021-07-14T10:08:31,520     writing /tmp/pip-pip-egg-info-r_nz9g6d/TransVar.egg-info/PKG-INFO
2021-07-14T10:08:31,522     writing dependency_links to /tmp/pip-pip-egg-info-r_nz9g6d/TransVar.egg-info/dependency_links.txt
2021-07-14T10:08:31,524     writing requirements to /tmp/pip-pip-egg-info-r_nz9g6d/TransVar.egg-info/requires.txt
2021-07-14T10:08:31,525     writing top-level names to /tmp/pip-pip-egg-info-r_nz9g6d/TransVar.egg-info/top_level.txt
2021-07-14T10:08:31,526     writing manifest file '/tmp/pip-pip-egg-info-r_nz9g6d/TransVar.egg-info/SOURCES.txt'
2021-07-14T10:08:31,846     reading manifest file '/tmp/pip-pip-egg-info-r_nz9g6d/TransVar.egg-info/SOURCES.txt'
2021-07-14T10:08:31,848     reading manifest template 'MANIFEST.in'
2021-07-14T10:08:31,871     warning: no files found matching 'Makefile' under directory 'external'
2021-07-14T10:08:31,880     warning: no files found matching '*.mk' under directory 'external'
2021-07-14T10:08:31,886     warning: no files found matching 'configure' under directory 'external'
2021-07-14T10:08:31,892     warning: no files found matching 'config.mk.in' under directory 'external'
2021-07-14T10:08:31,896     writing manifest file '/tmp/pip-pip-egg-info-r_nz9g6d/TransVar.egg-info/SOURCES.txt'
2021-07-14T10:08:31,981   Source in /tmp/pip-wheel-vz71yl7a/transvar_5b70245e72d048eabdffd5e28da4c6a0 has version 2.5.0.20190314, which satisfies requirement transvar==2.5.0.20190314 from https://files.pythonhosted.org/packages/b4/07/5354a402238297ebc687a5a64df3acced1e8c7a550cb8366f0cc597728bd/TransVar-2.5.0.20190314.tar.gz#sha256=7327c03076f3a96b3b76c53af030d3f360ae74f67036ba773d57a95475288c12
2021-07-14T10:08:31,982   Removed transvar==2.5.0.20190314 from https://files.pythonhosted.org/packages/b4/07/5354a402238297ebc687a5a64df3acced1e8c7a550cb8366f0cc597728bd/TransVar-2.5.0.20190314.tar.gz#sha256=7327c03076f3a96b3b76c53af030d3f360ae74f67036ba773d57a95475288c12 from build tracker '/tmp/pip-req-tracker-6hzxi1f8'
2021-07-14T10:08:31,986 Created temporary directory: /tmp/pip-unpack-dz9qsrqn
2021-07-14T10:08:31,987 Building wheels for collected packages: transvar
2021-07-14T10:08:31,992   Created temporary directory: /tmp/pip-wheel-sgr39afh
2021-07-14T10:08:31,993   Building wheel for transvar (setup.py): started
2021-07-14T10:08:31,993   Destination directory: /tmp/pip-wheel-sgr39afh
2021-07-14T10:08:31,993   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vz71yl7a/transvar_5b70245e72d048eabdffd5e28da4c6a0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vz71yl7a/transvar_5b70245e72d048eabdffd5e28da4c6a0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-sgr39afh
2021-07-14T10:08:33,111   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T10:08:33,112     warnings.warn(
2021-07-14T10:08:33,235   running bdist_wheel
2021-07-14T10:08:33,398   running build
2021-07-14T10:08:33,399   running build_py
2021-07-14T10:08:33,533   creating build
2021-07-14T10:08:33,534   creating build/lib.linux-armv7l-3.9
2021-07-14T10:08:33,534   creating build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,535   copying transvar/utils.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,538   copying transvar/argparse.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,542   copying transvar/codonsearch.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,544   copying transvar/annodb.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,547   copying transvar/transcripts.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,550   copying transvar/record.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,552   copying transvar/region.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,555   copying transvar/mutation.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,557   copying transvar/__init__.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,559   copying transvar/mnv.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,562   copying transvar/version.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,563   copying transvar/faidx.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,566   copying transvar/describe.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,569   copying transvar/parser.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,572   copying transvar/err.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,574   copying transvar/config.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,577   copying transvar/frameshift.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,580   copying transvar/deletion.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,583   copying transvar/localdb.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,587   copying transvar/proteinseqs.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,589   copying transvar/anno.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,592   copying transvar/snv.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,596   copying transvar/insertion.py -> build/lib.linux-armv7l-3.9/transvar
2021-07-14T10:08:33,600   creating build/lib.linux-armv7l-3.9/transvar/ssw
2021-07-14T10:08:33,601   copying transvar/ssw/__init__.py -> build/lib.linux-armv7l-3.9/transvar/ssw
2021-07-14T10:08:33,606   running build_ext
2021-07-14T10:08:33,613   building 'transvar.tabix' extension
2021-07-14T10:08:33,613   creating build/temp.linux-armv7l-3.9
2021-07-14T10:08:33,614   creating build/temp.linux-armv7l-3.9/external
2021-07-14T10:08:33,615   creating build/temp.linux-armv7l-3.9/external/pytabix
2021-07-14T10:08:33,616   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.9 -c external/pytabix/bgzf.c -o build/temp.linux-armv7l-3.9/external/pytabix/bgzf.o -w
2021-07-14T10:08:34,281   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.9 -c external/pytabix/bgzip.c -o build/temp.linux-armv7l-3.9/external/pytabix/bgzip.o -w
2021-07-14T10:08:34,718   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.9 -c external/pytabix/index.c -o build/temp.linux-armv7l-3.9/external/pytabix/index.o -w
2021-07-14T10:08:37,077   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.9 -c external/pytabix/knetfile.c -o build/temp.linux-armv7l-3.9/external/pytabix/knetfile.o -w
2021-07-14T10:08:37,838   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.9 -c external/pytabix/kstring.c -o build/temp.linux-armv7l-3.9/external/pytabix/kstring.o -w
2021-07-14T10:08:38,238   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.9 -c external/pytabix/tabixmodule.c -o build/temp.linux-armv7l-3.9/external/pytabix/tabixmodule.o -w
2021-07-14T10:08:38,846   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/external/pytabix/bgzf.o build/temp.linux-armv7l-3.9/external/pytabix/bgzip.o build/temp.linux-armv7l-3.9/external/pytabix/index.o build/temp.linux-armv7l-3.9/external/pytabix/knetfile.o build/temp.linux-armv7l-3.9/external/pytabix/kstring.o build/temp.linux-armv7l-3.9/external/pytabix/tabixmodule.o -lz -o build/lib.linux-armv7l-3.9/transvar/tabix.cpython-39-arm-linux-gnueabihf.so
2021-07-14T10:08:38,983   building 'transvar.ssw._sswlib' extension
2021-07-14T10:08:38,984   creating build/temp.linux-armv7l-3.9/external/ssw
2021-07-14T10:08:38,984   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iexternal/ssw -I/usr/include/python3.9 -c external/ssw/encode.c -o build/temp.linux-armv7l-3.9/external/ssw/encode.o -W -Wall -O2 -finline-functions -fPIC -shared -Wl,-soname,sswlib
2021-07-14T10:08:39,151   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iexternal/ssw -I/usr/include/python3.9 -c external/ssw/ssw.c -o build/temp.linux-armv7l-3.9/external/ssw/ssw.o -W -Wall -O2 -finline-functions -fPIC -shared -Wl,-soname,sswlib
2021-07-14T10:08:39,205   external/ssw/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory
2021-07-14T10:08:39,206      38 | #include <emmintrin.h>
2021-07-14T10:08:39,206         |          ^~~~~~~~~~~~~
2021-07-14T10:08:39,206   compilation terminated.
2021-07-14T10:08:39,210   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-14T10:08:39,302   Building wheel for transvar (setup.py): finished with status 'error'
2021-07-14T10:08:39,303   ERROR: Failed building wheel for transvar
2021-07-14T10:08:39,304   Running setup.py clean for transvar
2021-07-14T10:08:39,304   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vz71yl7a/transvar_5b70245e72d048eabdffd5e28da4c6a0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vz71yl7a/transvar_5b70245e72d048eabdffd5e28da4c6a0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-14T10:08:40,405   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T10:08:40,406     warnings.warn(
2021-07-14T10:08:40,528   running clean
2021-07-14T10:08:40,530   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-14T10:08:40,535   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-14T10:08:40,544   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-14T10:08:40,545   'build/scripts-3.9' does not exist -- can't clean it
2021-07-14T10:08:40,545   removing 'build'
2021-07-14T10:08:40,613 Failed to build transvar
2021-07-14T10:08:40,613 ERROR: Failed to build one or more wheels
2021-07-14T10:08:40,614 Exception information:
2021-07-14T10:08:40,614 Traceback (most recent call last):
2021-07-14T10:08:40,614   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-14T10:08:40,614     status = self.run(options, args)
2021-07-14T10:08:40,614   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-14T10:08:40,614     return func(self, options, args)
2021-07-14T10:08:40,614   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-14T10:08:40,614     raise CommandError(
2021-07-14T10:08:40,614 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-14T10:08:40,617 Removed build tracker: '/tmp/pip-req-tracker-6hzxi1f8'