2021-07-14T10:43:08,041 Created temporary directory: /tmp/pip-ephem-wheel-cache-r5b3hscv 2021-07-14T10:43:08,044 Created temporary directory: /tmp/pip-req-tracker-r5ub71i0 2021-07-14T10:43:08,045 Initialized build tracking at /tmp/pip-req-tracker-r5ub71i0 2021-07-14T10:43:08,045 Created build tracker: /tmp/pip-req-tracker-r5ub71i0 2021-07-14T10:43:08,045 Entered build tracker: /tmp/pip-req-tracker-r5ub71i0 2021-07-14T10:43:08,046 Created temporary directory: /tmp/pip-wheel-_57_i0ww 2021-07-14T10:43:08,075 1 location(s) to search for versions of moods-python: 2021-07-14T10:43:08,075 * https://pypi.org/simple/moods-python/ 2021-07-14T10:43:08,075 Fetching project page and analyzing links: https://pypi.org/simple/moods-python/ 2021-07-14T10:43:08,076 Getting page https://pypi.org/simple/moods-python/ 2021-07-14T10:43:08,077 Found index url https://pypi.org/simple 2021-07-14T10:43:08,165 Found link https://files.pythonhosted.org/packages/7b/5c/f98bfcf66c2dade3f616cf614eef2d243f9d8d8006ff84d8c522147f35f3/MOODS-python-1.9.3.tar.gz#sha256=6022878918e82e84c3d764d2f725bbb56b41942565e7595c478bb40f02ff8b14 (from https://pypi.org/simple/moods-python/), version: 1.9.3 2021-07-14T10:43:08,166 Found link https://files.pythonhosted.org/packages/c8/26/b93e9fe2f78d5f9bf07f8aa6f5870a3ae593cb880f918c8213aaf98d6dd7/MOODS-python-1.9.3.1.tar.gz#sha256=4deec2c3b872a549be462612f98a9956ae376b8f4949fcb0f276dcd2da6ac596 (from https://pypi.org/simple/moods-python/), version: 1.9.3.1 2021-07-14T10:43:08,166 Found link https://files.pythonhosted.org/packages/f7/34/c623e9b57e3e3f1edf030201603d8110bf9969921790d950836176be4749/MOODS-python-1.9.4.1.tar.gz#sha256=b3b5e080cb0cd13c0fd175d0ee0d453fde3e42794fa7ac39a4f6db1ac5ddb4cc (from https://pypi.org/simple/moods-python/), version: 1.9.4.1 2021-07-14T10:43:08,166 Skipping link: not a file: https://pypi.org/simple/moods-python/ 2021-07-14T10:43:08,184 Given no hashes to check 1 links for project 'moods-python': discarding no candidates 2021-07-14T10:43:08,206 Collecting moods-python==1.9.3.1 2021-07-14T10:43:08,208 Created temporary directory: /tmp/pip-unpack-rdee1ld6 2021-07-14T10:43:08,248 Downloading MOODS-python-1.9.3.1.tar.gz (226 kB) 2021-07-14T10:43:08,436 Added moods-python==1.9.3.1 from https://files.pythonhosted.org/packages/c8/26/b93e9fe2f78d5f9bf07f8aa6f5870a3ae593cb880f918c8213aaf98d6dd7/MOODS-python-1.9.3.1.tar.gz#sha256=4deec2c3b872a549be462612f98a9956ae376b8f4949fcb0f276dcd2da6ac596 to build tracker '/tmp/pip-req-tracker-r5ub71i0' 2021-07-14T10:43:08,437 Running setup.py (path:/tmp/pip-wheel-_57_i0ww/moods-python_a436baaf82e7441083d0655382b13066/setup.py) egg_info for package moods-python 2021-07-14T10:43:08,438 Created temporary directory: /tmp/pip-pip-egg-info-vil826hx 2021-07-14T10:43:08,438 Running command python setup.py egg_info 2021-07-14T10:43:09,633 running egg_info 2021-07-14T10:43:09,636 creating /tmp/pip-pip-egg-info-vil826hx/MOODS_python.egg-info 2021-07-14T10:43:09,638 writing /tmp/pip-pip-egg-info-vil826hx/MOODS_python.egg-info/PKG-INFO 2021-07-14T10:43:09,640 writing dependency_links to /tmp/pip-pip-egg-info-vil826hx/MOODS_python.egg-info/dependency_links.txt 2021-07-14T10:43:09,642 writing top-level names to /tmp/pip-pip-egg-info-vil826hx/MOODS_python.egg-info/top_level.txt 2021-07-14T10:43:09,644 writing manifest file '/tmp/pip-pip-egg-info-vil826hx/MOODS_python.egg-info/SOURCES.txt' 2021-07-14T10:43:10,011 reading manifest file '/tmp/pip-pip-egg-info-vil826hx/MOODS_python.egg-info/SOURCES.txt' 2021-07-14T10:43:10,016 writing manifest file '/tmp/pip-pip-egg-info-vil826hx/MOODS_python.egg-info/SOURCES.txt' 2021-07-14T10:43:10,105 Source in /tmp/pip-wheel-_57_i0ww/moods-python_a436baaf82e7441083d0655382b13066 has version 1.9.3.1, which satisfies requirement moods-python==1.9.3.1 from https://files.pythonhosted.org/packages/c8/26/b93e9fe2f78d5f9bf07f8aa6f5870a3ae593cb880f918c8213aaf98d6dd7/MOODS-python-1.9.3.1.tar.gz#sha256=4deec2c3b872a549be462612f98a9956ae376b8f4949fcb0f276dcd2da6ac596 2021-07-14T10:43:10,106 Removed moods-python==1.9.3.1 from https://files.pythonhosted.org/packages/c8/26/b93e9fe2f78d5f9bf07f8aa6f5870a3ae593cb880f918c8213aaf98d6dd7/MOODS-python-1.9.3.1.tar.gz#sha256=4deec2c3b872a549be462612f98a9956ae376b8f4949fcb0f276dcd2da6ac596 from build tracker '/tmp/pip-req-tracker-r5ub71i0' 2021-07-14T10:43:10,110 Created temporary directory: /tmp/pip-unpack-tvy1cgvm 2021-07-14T10:43:10,111 Building wheels for collected packages: moods-python 2021-07-14T10:43:10,114 Created temporary directory: /tmp/pip-wheel-dh8xlagn 2021-07-14T10:43:10,115 Building wheel for moods-python (setup.py): started 2021-07-14T10:43:10,115 Destination directory: /tmp/pip-wheel-dh8xlagn 2021-07-14T10:43:10,116 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_57_i0ww/moods-python_a436baaf82e7441083d0655382b13066/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_57_i0ww/moods-python_a436baaf82e7441083d0655382b13066/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-dh8xlagn 2021-07-14T10:43:11,325 running bdist_wheel 2021-07-14T10:43:11,491 running build 2021-07-14T10:43:11,491 running build_py 2021-07-14T10:43:11,632 creating build 2021-07-14T10:43:11,632 creating build/lib.linux-armv7l-3.9 2021-07-14T10:43:11,633 creating build/lib.linux-armv7l-3.9/MOODS 2021-07-14T10:43:11,634 copying MOODS/tools.py -> build/lib.linux-armv7l-3.9/MOODS 2021-07-14T10:43:11,637 copying MOODS/__init__.py -> build/lib.linux-armv7l-3.9/MOODS 2021-07-14T10:43:11,638 copying MOODS/scan.py -> build/lib.linux-armv7l-3.9/MOODS 2021-07-14T10:43:11,641 copying MOODS/parsers.py -> build/lib.linux-armv7l-3.9/MOODS 2021-07-14T10:43:11,644 copying MOODS/misc.py -> build/lib.linux-armv7l-3.9/MOODS 2021-07-14T10:43:11,646 running build_ext 2021-07-14T10:43:11,653 building 'MOODS._tools' extension 2021-07-14T10:43:11,653 creating build/temp.linux-armv7l-3.9 2021-07-14T10:43:11,654 creating build/temp.linux-armv7l-3.9/core 2021-07-14T10:43:11,654 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/match_types.cpp -o build/temp.linux-armv7l-3.9/core/match_types.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:43:12,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/moods_misc.cpp -o build/temp.linux-armv7l-3.9/core/moods_misc.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:43:13,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/moods_tools.cpp -o build/temp.linux-armv7l-3.9/core/moods_tools.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:43:14,667 core/moods_tools.cpp: In function ‘double MOODS::tools::threshold_from_p(const score_matrix&, const std::vector&, const double&)’: 2021-07-14T10:43:14,667 core/moods_tools.cpp:155:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,667 155 | for (size_t i = 0; i < n; ++i) 2021-07-14T10:43:14,668 | ~~^~~ 2021-07-14T10:43:14,668 core/moods_tools.cpp:157:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,668 157 | for (size_t j = 0; j < a; ++j) 2021-07-14T10:43:14,668 | ~~^~~ 2021-07-14T10:43:14,668 core/moods_tools.cpp:168:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,668 168 | for (size_t i = 0; i < n; ++i) 2021-07-14T10:43:14,669 | ~~^~~ 2021-07-14T10:43:14,669 core/moods_tools.cpp:172:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,669 172 | for (size_t j = 1; j < a; ++j) 2021-07-14T10:43:14,669 | ~~^~~ 2021-07-14T10:43:14,669 core/moods_tools.cpp:190:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,669 190 | for (size_t j = 0; j < a; ++j) 2021-07-14T10:43:14,670 | ~~^~~ 2021-07-14T10:43:14,670 core/moods_tools.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,670 193 | for (size_t i = 1; i < n; ++i) 2021-07-14T10:43:14,670 | ~~^~~ 2021-07-14T10:43:14,670 core/moods_tools.cpp:195:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,670 195 | for (size_t j = 0; j < a; ++j) 2021-07-14T10:43:14,671 | ~~^~~ 2021-07-14T10:43:14,677 core/moods_tools.cpp: In function ‘score_matrix MOODS::tools::log_odds(const std::vector >&, const std::vector >&, const std::vector&, double, std::size_t)’: 2021-07-14T10:43:14,677 core/moods_tools.cpp:320:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:43:14,677 320 | for (size_t PCODE = 0; PCODE < 1 << (SHIFT * r); ++PCODE ){ 2021-07-14T10:43:14,677 | ~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:14,678 core/moods_tools.cpp:328:46: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:43:14,678 328 | for (size_t SCODE = 0; SCODE < 1 << (SHIFT * (q - r - 1)); ++SCODE){ 2021-07-14T10:43:14,678 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:14,686 core/moods_tools.cpp: In function ‘double MOODS::tools::threshold_from_p(const score_matrix&, const std::vector&, const double&, std::size_t)’: 2021-07-14T10:43:14,686 core/moods_tools.cpp:454:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,686 454 | for (size_t i = 0; i < cols; ++i) 2021-07-14T10:43:14,687 | ~~^~~~~~ 2021-07-14T10:43:14,687 core/moods_tools.cpp:456:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,687 456 | for (size_t CODE = 0; CODE < rows; ++CODE) 2021-07-14T10:43:14,687 | ~~~~~^~~~~~ 2021-07-14T10:43:14,687 core/moods_tools.cpp:468:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,687 468 | for (size_t i = 0; i < cols; ++i) 2021-07-14T10:43:14,688 | ~~^~~~~~ 2021-07-14T10:43:14,688 core/moods_tools.cpp:472:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,688 472 | for (size_t CODE = 1; CODE < rows; ++CODE) 2021-07-14T10:43:14,688 | ~~~~~^~~~~~ 2021-07-14T10:43:14,688 core/moods_tools.cpp:489:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:43:14,688 489 | for (size_t CODE = 0; CODE < (1 << (SHIFT * q)); ++CODE){ 2021-07-14T10:43:14,688 | ~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:14,689 core/moods_tools.cpp:500:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:43:14,689 500 | for (size_t i = 1; i < cols; ++i) 2021-07-14T10:43:14,689 | ~~^~~~~~ 2021-07-14T10:43:14,689 core/moods_tools.cpp:503:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:43:14,690 503 | for (size_t CODE = 0; CODE < (1 << (SHIFT * q)); ++CODE) 2021-07-14T10:43:14,690 | ~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:19,056 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/tools_wrap.cxx -o build/temp.linux-armv7l-3.9/core/tools_wrap.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:43:21,864 core/tools_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’: 2021-07-14T10:43:21,864 core/tools_wrap.cxx:3745:64: required from ‘Type swig::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’ 2021-07-14T10:43:21,865 core/tools_wrap.cxx:4308:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = std::vector]’ 2021-07-14T10:43:21,865 core/tools_wrap.cxx:4559:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]’ 2021-07-14T10:43:21,865 core/tools_wrap.cxx:4581:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::vector; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]’ 2021-07-14T10:43:21,865 core/tools_wrap.cxx:4635:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = std::vector; PyObject = _object]’ 2021-07-14T10:43:21,865 core/tools_wrap.cxx:3637:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]’ 2021-07-14T10:43:21,865 core/tools_wrap.cxx:10230:34: required from here 2021-07-14T10:43:21,866 core/tools_wrap.cxx:3720:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘class std::vector’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 2021-07-14T10:43:21,866 3720 | memset(v_def,0,sizeof(Type)); 2021-07-14T10:43:21,866 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:21,866 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:43:21,866 from core/moods.h:5, 2021-07-14T10:43:21,866 from core/tools_wrap.cxx:3139: 2021-07-14T10:43:21,867 /usr/include/c++/10/bits/stl_vector.h:389:11: note: ‘class std::vector’ declared here 2021-07-14T10:43:21,867 389 | class vector : protected _Vector_base<_Tp, _Alloc> 2021-07-14T10:43:21,867 | ^~~~~~ 2021-07-14T10:43:21,869 core/tools_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*, bool) [with Type = MOODS::variant; PyObject = _object]’: 2021-07-14T10:43:21,870 core/tools_wrap.cxx:3745:64: required from ‘Type swig::as(PyObject*, bool) [with Type = MOODS::variant; PyObject = _object]’ 2021-07-14T10:43:21,870 core/tools_wrap.cxx:4308:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = MOODS::variant]’ 2021-07-14T10:43:21,870 core/tools_wrap.cxx:4559:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]’ 2021-07-14T10:43:21,870 core/tools_wrap.cxx:4581:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = MOODS::variant; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]’ 2021-07-14T10:43:21,870 core/tools_wrap.cxx:4635:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = MOODS::variant; PyObject = _object]’ 2021-07-14T10:43:21,870 core/tools_wrap.cxx:3637:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]’ 2021-07-14T10:43:21,870 core/tools_wrap.cxx:12178:34: required from here 2021-07-14T10:43:21,871 core/tools_wrap.cxx:3720:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct MOODS::variant’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 2021-07-14T10:43:21,871 3720 | memset(v_def,0,sizeof(Type)); 2021-07-14T10:43:21,871 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:21,871 In file included from core/moods_tools.h:5, 2021-07-14T10:43:21,871 from core/tools_wrap.cxx:3140: 2021-07-14T10:43:21,871 core/match_types.h:17:12: note: ‘struct MOODS::variant’ declared here 2021-07-14T10:43:21,872 17 | struct variant 2021-07-14T10:43:21,872 | ^~~~~~~ 2021-07-14T10:43:34,082 In file included from /usr/include/string.h:495, 2021-07-14T10:43:34,083 from /usr/include/python3.9/Python.h:30, 2021-07-14T10:43:34,083 from core/tools_wrap.cxx:171: 2021-07-14T10:43:34,083 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-14T10:43:34,083 inlined from ‘void SWIG_Python_FixMethods(PyMethodDef*, swig_const_info*, swig_type_info**, swig_type_info**)’ at core/tools_wrap.cxx:16416:22, 2021-07-14T10:43:34,083 inlined from ‘PyObject* PyInit__tools()’ at core/tools_wrap.cxx:16516:25: 2021-07-14T10:43:34,083 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 2021-07-14T10:43:34,084 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-14T10:43:34,084 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:35,646 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:43:35,646 from core/moods.h:5, 2021-07-14T10:43:35,646 from core/tools_wrap.cxx:3139: 2021-07-14T10:43:35,646 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T10:43:35,646 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:43:35,647 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:43:35,647 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:35,709 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:43:35,709 from core/moods.h:5, 2021-07-14T10:43:35,709 from core/tools_wrap.cxx:3139: 2021-07-14T10:43:35,709 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector; Difference = int]’: 2021-07-14T10:43:35,709 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:43:35,710 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:43:35,710 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:43:35,710 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:43:35,710 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:43:35,710 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:43:35,710 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:43:35,787 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_double_append(PyObject*, PyObject*)’: 2021-07-14T10:43:35,787 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:43:35,787 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:43:35,787 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:43:35,825 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_double_push_back(PyObject*, PyObject*)’: 2021-07-14T10:43:35,826 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:43:35,826 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:43:35,826 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:43:35,888 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:43:35,888 from core/moods.h:5, 2021-07-14T10:43:35,888 from core/tools_wrap.cxx:3139: 2021-07-14T10:43:35,888 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2021-07-14T10:43:35,888 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:43:35,889 509 | vector<_Tp, _Alloc>:: 2021-07-14T10:43:35,889 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:41,931 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_vector_double_insert(PyObject*, PyObject*)’: 2021-07-14T10:43:41,932 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:43:41,932 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-14T10:43:41,932 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:41,934 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:43:41,934 from core/moods.h:5, 2021-07-14T10:43:41,934 from core/tools_wrap.cxx:3139: 2021-07-14T10:43:41,935 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:43:41,935 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2021-07-14T10:43:41,935 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:42,177 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_double_resize(PyObject*, PyObject*)’: 2021-07-14T10:43:42,177 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:43:42,177 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-14T10:43:42,177 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:43:56,967 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/core/match_types.o build/temp.linux-armv7l-3.9/core/moods_misc.o build/temp.linux-armv7l-3.9/core/moods_tools.o build/temp.linux-armv7l-3.9/core/tools_wrap.o -o build/lib.linux-armv7l-3.9/MOODS/_tools.cpython-39-arm-linux-gnueabihf.so 2021-07-14T10:43:57,536 building 'MOODS._scan' extension 2021-07-14T10:43:57,537 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/match_types.cpp -o build/temp.linux-armv7l-3.9/core/match_types.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:43:58,413 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/moods_misc.cpp -o build/temp.linux-armv7l-3.9/core/moods_misc.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:43:59,649 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/moods_scan.cpp -o build/temp.linux-armv7l-3.9/core/moods_scan.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:44:00,738 core/moods_scan.cpp: In function ‘std::vector > MOODS::scan::scan_best_hits_dna(const string&, const std::vector > >&, std::size_t, int, unsigned int, std::size_t, std::size_t)’: 2021-07-14T10:44:00,738 core/moods_scan.cpp:97:14: warning: unused variable ‘done’ [-Wunused-variable] 2021-07-14T10:44:00,738 97 | bool done = 0; 2021-07-14T10:44:00,738 | ^~~~ 2021-07-14T10:44:00,757 core/moods_scan.cpp: In function ‘std::vector MOODS::scan::naive_scan_dna(const string&, score_matrix, double, std::size_t)’: 2021-07-14T10:44:00,757 core/moods_scan.cpp:252:33: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 2021-07-14T10:44:00,757 252 | CODE = MASK & (CODE << SHIFT) | alphabet_map[seq[i+j+q-1]]; 2021-07-14T10:44:00,757 | ~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T10:44:02,117 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:44:02,117 from core/moods.h:5, 2021-07-14T10:44:02,117 from core/moods_scan.cpp:3: 2021-07-14T10:44:02,117 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T10:44:02,118 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:44:02,118 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:44:02,118 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:02,524 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:44:02,524 from core/moods.h:5, 2021-07-14T10:44:02,525 from core/moods_scan.cpp:3: 2021-07-14T10:44:02,525 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector > MOODS::scan::scan_best_hits_dna(const string&, const std::vector > >&, std::size_t, int, unsigned int, std::size_t, std::size_t)’: 2021-07-14T10:44:02,525 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:02,525 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:44:02,525 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:44:03,280 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:44:03,280 from core/moods.h:5, 2021-07-14T10:44:03,280 from core/moods_scan.cpp:3: 2021-07-14T10:44:03,281 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MOODS::match}; _Tp = MOODS::match; _Alloc = std::allocator]’: 2021-07-14T10:44:03,281 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:44:03,281 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:44:03,281 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:03,349 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector MOODS::scan::naive_scan_dna(const string&, score_matrix, double, std::size_t)’: 2021-07-14T10:44:03,349 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:03,350 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:44:03,350 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:03,458 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector MOODS::scan::naive_scan_dna(const string&, score_matrix, double)’: 2021-07-14T10:44:03,458 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:03,458 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:44:03,458 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:04,015 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/moods_tools.cpp -o build/temp.linux-armv7l-3.9/core/moods_tools.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:44:04,848 core/moods_tools.cpp: In function ‘double MOODS::tools::threshold_from_p(const score_matrix&, const std::vector&, const double&)’: 2021-07-14T10:44:04,849 core/moods_tools.cpp:155:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,849 155 | for (size_t i = 0; i < n; ++i) 2021-07-14T10:44:04,849 | ~~^~~ 2021-07-14T10:44:04,849 core/moods_tools.cpp:157:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,849 157 | for (size_t j = 0; j < a; ++j) 2021-07-14T10:44:04,849 | ~~^~~ 2021-07-14T10:44:04,850 core/moods_tools.cpp:168:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,850 168 | for (size_t i = 0; i < n; ++i) 2021-07-14T10:44:04,850 | ~~^~~ 2021-07-14T10:44:04,850 core/moods_tools.cpp:172:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,850 172 | for (size_t j = 1; j < a; ++j) 2021-07-14T10:44:04,850 | ~~^~~ 2021-07-14T10:44:04,851 core/moods_tools.cpp:190:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,851 190 | for (size_t j = 0; j < a; ++j) 2021-07-14T10:44:04,851 | ~~^~~ 2021-07-14T10:44:04,851 core/moods_tools.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,851 193 | for (size_t i = 1; i < n; ++i) 2021-07-14T10:44:04,851 | ~~^~~ 2021-07-14T10:44:04,852 core/moods_tools.cpp:195:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,852 195 | for (size_t j = 0; j < a; ++j) 2021-07-14T10:44:04,852 | ~~^~~ 2021-07-14T10:44:04,858 core/moods_tools.cpp: In function ‘score_matrix MOODS::tools::log_odds(const std::vector >&, const std::vector >&, const std::vector&, double, std::size_t)’: 2021-07-14T10:44:04,858 core/moods_tools.cpp:320:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:44:04,858 320 | for (size_t PCODE = 0; PCODE < 1 << (SHIFT * r); ++PCODE ){ 2021-07-14T10:44:04,859 | ~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:04,859 core/moods_tools.cpp:328:46: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:44:04,859 328 | for (size_t SCODE = 0; SCODE < 1 << (SHIFT * (q - r - 1)); ++SCODE){ 2021-07-14T10:44:04,859 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:04,867 core/moods_tools.cpp: In function ‘double MOODS::tools::threshold_from_p(const score_matrix&, const std::vector&, const double&, std::size_t)’: 2021-07-14T10:44:04,868 core/moods_tools.cpp:454:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,868 454 | for (size_t i = 0; i < cols; ++i) 2021-07-14T10:44:04,868 | ~~^~~~~~ 2021-07-14T10:44:04,868 core/moods_tools.cpp:456:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,868 456 | for (size_t CODE = 0; CODE < rows; ++CODE) 2021-07-14T10:44:04,868 | ~~~~~^~~~~~ 2021-07-14T10:44:04,869 core/moods_tools.cpp:468:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,869 468 | for (size_t i = 0; i < cols; ++i) 2021-07-14T10:44:04,869 | ~~^~~~~~ 2021-07-14T10:44:04,869 core/moods_tools.cpp:472:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,869 472 | for (size_t CODE = 1; CODE < rows; ++CODE) 2021-07-14T10:44:04,869 | ~~~~~^~~~~~ 2021-07-14T10:44:04,869 core/moods_tools.cpp:489:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:44:04,870 489 | for (size_t CODE = 0; CODE < (1 << (SHIFT * q)); ++CODE){ 2021-07-14T10:44:04,870 | ~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:04,870 core/moods_tools.cpp:500:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:44:04,870 500 | for (size_t i = 1; i < cols; ++i) 2021-07-14T10:44:04,871 | ~~^~~~~~ 2021-07-14T10:44:04,871 core/moods_tools.cpp:503:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:44:04,871 503 | for (size_t CODE = 0; CODE < (1 << (SHIFT * q)); ++CODE) 2021-07-14T10:44:04,871 | ~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:09,214 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/motif_0.cpp -o build/temp.linux-armv7l-3.9/core/motif_0.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:44:10,076 core/motif_0.cpp: In function ‘std::vector MOODS::scan::expected_differences(const score_matrix&, const std::vector&)’: 2021-07-14T10:44:10,077 core/motif_0.cpp:28:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T10:44:10,077 28 | for (int i = 0; i < m; ++i) 2021-07-14T10:44:10,077 | ~~^~~ 2021-07-14T10:44:10,077 core/motif_0.cpp:31:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T10:44:10,077 31 | for (int j = 0; j < a; ++j) 2021-07-14T10:44:10,077 | ~~^~~ 2021-07-14T10:44:10,078 core/motif_0.cpp:38:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T10:44:10,078 38 | for (int j = 0; j < a; ++j) 2021-07-14T10:44:10,078 | ~~^~~ 2021-07-14T10:44:10,079 core/motif_0.cpp: In function ‘unsigned int MOODS::scan::window_position(const std::vector&, unsigned int, unsigned int)’: 2021-07-14T10:44:10,079 core/motif_0.cpp:64:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T10:44:10,079 64 | for (int i = 0; i < m - l; ++i) 2021-07-14T10:44:10,080 | ~~^~~~~~~ 2021-07-14T10:44:10,085 core/motif_0.cpp: In function ‘std::vector MOODS::scan::compute_lookahead_order(const std::vector&, unsigned int, unsigned int, unsigned int)’: 2021-07-14T10:44:10,085 core/motif_0.cpp:96:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T10:44:10,085 96 | for (int i = 0; i < window_pos; ++i) 2021-07-14T10:44:10,085 | ~~^~~~~~~~~~~~ 2021-07-14T10:44:10,085 core/motif_0.cpp:100:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T10:44:10,086 100 | for (int i = window_pos+l; i < m; ++i) 2021-07-14T10:44:10,086 | ~~^~~ 2021-07-14T10:44:11,605 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/motif_h.cpp -o build/temp.linux-armv7l-3.9/core/motif_h.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:44:12,472 core/motif_h.cpp: In member function ‘std::vector MOODS::scan::MotifH::expected_scores(const std::vector&)’: 2021-07-14T10:44:12,472 core/motif_h.cpp:26:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T10:44:12,472 26 | for (int i = 0; i < cols; ++i){ 2021-07-14T10:44:12,472 | ~~^~~~~~ 2021-07-14T10:44:12,473 core/motif_h.cpp:27:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T10:44:12,473 27 | for (int j = 0; j < rows; ++j){ 2021-07-14T10:44:12,473 | ~~^~~~~~ 2021-07-14T10:44:12,518 core/motif_h.cpp: In member function ‘virtual std::pair MOODS::scan::MotifH::check_hit(const string&, const std::vector&, std::size_t, double)’: 2021-07-14T10:44:12,518 core/motif_h.cpp:256:25: warning: suggest parentheses around arithmetic in operand of ‘^’ [-Wparentheses] 2021-07-14T10:44:12,518 256 | CODE = MASK & (CODE << SHIFT) ^ alphabet_map[s[ii + i + q - 1]]; 2021-07-14T10:44:12,518 | ~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T10:44:14,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/scan_wrap.cxx -o build/temp.linux-armv7l-3.9/core/scan_wrap.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:44:19,064 core/scan_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’: 2021-07-14T10:44:19,064 core/scan_wrap.cxx:3760:64: required from ‘Type swig::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’ 2021-07-14T10:44:19,064 core/scan_wrap.cxx:4323:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = std::vector]’ 2021-07-14T10:44:19,064 core/scan_wrap.cxx:4574:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]’ 2021-07-14T10:44:19,065 core/scan_wrap.cxx:4596:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::vector; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]’ 2021-07-14T10:44:19,065 core/scan_wrap.cxx:4650:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = std::vector; PyObject = _object]’ 2021-07-14T10:44:19,065 core/scan_wrap.cxx:3652:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]’ 2021-07-14T10:44:19,065 core/scan_wrap.cxx:12960:34: required from here 2021-07-14T10:44:19,065 core/scan_wrap.cxx:3735:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘class std::vector’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 2021-07-14T10:44:19,065 3735 | memset(v_def,0,sizeof(Type)); 2021-07-14T10:44:19,066 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:19,066 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:44:19,066 from core/moods.h:5, 2021-07-14T10:44:19,066 from core/scan_wrap.cxx:3153: 2021-07-14T10:44:19,066 /usr/include/c++/10/bits/stl_vector.h:389:11: note: ‘class std::vector’ declared here 2021-07-14T10:44:19,066 389 | class vector : protected _Vector_base<_Tp, _Alloc> 2021-07-14T10:44:19,066 | ^~~~~~ 2021-07-14T10:44:19,069 core/scan_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]’: 2021-07-14T10:44:19,070 core/scan_wrap.cxx:3760:64: required from ‘Type swig::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]’ 2021-07-14T10:44:19,070 core/scan_wrap.cxx:4323:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = std::vector >]’ 2021-07-14T10:44:19,070 core/scan_wrap.cxx:4574:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont > >; Seq = std::vector > >]’ 2021-07-14T10:44:19,070 core/scan_wrap.cxx:4596:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector > >; T = std::vector >; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector > >]’ 2021-07-14T10:44:19,070 core/scan_wrap.cxx:4650:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = std::vector >; PyObject = _object]’ 2021-07-14T10:44:19,070 core/scan_wrap.cxx:3652:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector > >; PyObject = _object]’ 2021-07-14T10:44:19,071 core/scan_wrap.cxx:14908:34: required from here 2021-07-14T10:44:19,071 core/scan_wrap.cxx:3735:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘class std::vector >’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 2021-07-14T10:44:19,071 3735 | memset(v_def,0,sizeof(Type)); 2021-07-14T10:44:19,071 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:19,071 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:44:19,071 from core/moods.h:5, 2021-07-14T10:44:19,072 from core/scan_wrap.cxx:3153: 2021-07-14T10:44:19,072 /usr/include/c++/10/bits/stl_vector.h:389:11: note: ‘class std::vector >’ declared here 2021-07-14T10:44:19,072 389 | class vector : protected _Vector_base<_Tp, _Alloc> 2021-07-14T10:44:19,072 | ^~~~~~ 2021-07-14T10:44:19,078 core/scan_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’: 2021-07-14T10:44:19,079 core/scan_wrap.cxx:3760:64: required from ‘Type swig::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’ 2021-07-14T10:44:19,079 core/scan_wrap.cxx:4323:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = std::vector]’ 2021-07-14T10:44:19,079 core/scan_wrap.cxx:4574:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]’ 2021-07-14T10:44:19,079 core/scan_wrap.cxx:4596:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::vector; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]’ 2021-07-14T10:44:19,079 core/scan_wrap.cxx:4650:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = std::vector; PyObject = _object]’ 2021-07-14T10:44:19,079 core/scan_wrap.cxx:3652:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]’ 2021-07-14T10:44:19,080 core/scan_wrap.cxx:18772:34: required from here 2021-07-14T10:44:19,080 core/scan_wrap.cxx:3735:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘class std::vector’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 2021-07-14T10:44:19,080 3735 | memset(v_def,0,sizeof(Type)); 2021-07-14T10:44:19,080 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:19,080 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:44:19,080 from core/moods.h:5, 2021-07-14T10:44:19,081 from core/scan_wrap.cxx:3153: 2021-07-14T10:44:19,081 /usr/include/c++/10/bits/stl_vector.h:389:11: note: ‘class std::vector’ declared here 2021-07-14T10:44:19,081 389 | class vector : protected _Vector_base<_Tp, _Alloc> 2021-07-14T10:44:19,081 | ^~~~~~ 2021-07-14T10:44:19,087 core/scan_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*, bool) [with Type = MOODS::variant; PyObject = _object]’: 2021-07-14T10:44:19,087 core/scan_wrap.cxx:3760:64: required from ‘Type swig::as(PyObject*, bool) [with Type = MOODS::variant; PyObject = _object]’ 2021-07-14T10:44:19,087 core/scan_wrap.cxx:4323:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = MOODS::variant]’ 2021-07-14T10:44:19,088 core/scan_wrap.cxx:4574:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]’ 2021-07-14T10:44:19,088 core/scan_wrap.cxx:4596:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = MOODS::variant; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]’ 2021-07-14T10:44:19,088 core/scan_wrap.cxx:4650:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = MOODS::variant; PyObject = _object]’ 2021-07-14T10:44:19,088 core/scan_wrap.cxx:3652:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]’ 2021-07-14T10:44:19,088 core/scan_wrap.cxx:22668:34: required from here 2021-07-14T10:44:19,088 core/scan_wrap.cxx:3735:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct MOODS::variant’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 2021-07-14T10:44:19,088 3735 | memset(v_def,0,sizeof(Type)); 2021-07-14T10:44:19,089 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:19,089 In file included from core/scanner.h:7, 2021-07-14T10:44:19,089 from core/moods_scan.h:7, 2021-07-14T10:44:19,089 from core/scan_wrap.cxx:3154: 2021-07-14T10:44:19,089 core/match_types.h:17:12: note: ‘struct MOODS::variant’ declared here 2021-07-14T10:44:19,089 17 | struct variant 2021-07-14T10:44:19,089 | ^~~~~~~ 2021-07-14T10:44:19,092 core/scan_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*, bool) [with Type = MOODS::match_with_variant; PyObject = _object]’: 2021-07-14T10:44:19,093 core/scan_wrap.cxx:3760:64: required from ‘Type swig::as(PyObject*, bool) [with Type = MOODS::match_with_variant; PyObject = _object]’ 2021-07-14T10:44:19,093 core/scan_wrap.cxx:4323:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = MOODS::match_with_variant]’ 2021-07-14T10:44:19,093 core/scan_wrap.cxx:4574:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]’ 2021-07-14T10:44:19,093 core/scan_wrap.cxx:4596:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = MOODS::match_with_variant; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]’ 2021-07-14T10:44:19,093 core/scan_wrap.cxx:4650:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = MOODS::match_with_variant; PyObject = _object]’ 2021-07-14T10:44:19,094 core/scan_wrap.cxx:3652:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]’ 2021-07-14T10:44:19,094 core/scan_wrap.cxx:24584:34: required from here 2021-07-14T10:44:19,094 core/scan_wrap.cxx:3735:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct MOODS::match_with_variant’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 2021-07-14T10:44:19,094 3735 | memset(v_def,0,sizeof(Type)); 2021-07-14T10:44:19,094 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:19,094 In file included from core/scanner.h:7, 2021-07-14T10:44:19,094 from core/moods_scan.h:7, 2021-07-14T10:44:19,095 from core/scan_wrap.cxx:3154: 2021-07-14T10:44:19,095 core/match_types.h:35:12: note: ‘struct MOODS::match_with_variant’ declared here 2021-07-14T10:44:19,095 35 | struct match_with_variant 2021-07-14T10:44:19,095 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:19,097 core/scan_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’: 2021-07-14T10:44:19,098 core/scan_wrap.cxx:3760:64: required from ‘Type swig::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’ 2021-07-14T10:44:19,098 core/scan_wrap.cxx:4323:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = std::vector]’ 2021-07-14T10:44:19,098 core/scan_wrap.cxx:4574:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]’ 2021-07-14T10:44:19,098 core/scan_wrap.cxx:4596:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::vector; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]’ 2021-07-14T10:44:19,098 core/scan_wrap.cxx:4650:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = std::vector; PyObject = _object]’ 2021-07-14T10:44:19,098 core/scan_wrap.cxx:3652:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]’ 2021-07-14T10:44:19,099 core/scan_wrap.cxx:26500:34: required from here 2021-07-14T10:44:19,099 core/scan_wrap.cxx:3735:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘class std::vector’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 2021-07-14T10:44:19,099 3735 | memset(v_def,0,sizeof(Type)); 2021-07-14T10:44:19,099 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:19,099 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:44:19,099 from core/moods.h:5, 2021-07-14T10:44:19,099 from core/scan_wrap.cxx:3153: 2021-07-14T10:44:19,100 /usr/include/c++/10/bits/stl_vector.h:389:11: note: ‘class std::vector’ declared here 2021-07-14T10:44:19,100 389 | class vector : protected _Vector_base<_Tp, _Alloc> 2021-07-14T10:44:19,100 | ^~~~~~ 2021-07-14T10:44:46,713 In file included from /usr/include/string.h:495, 2021-07-14T10:44:46,713 from /usr/include/python3.9/Python.h:30, 2021-07-14T10:44:46,713 from core/scan_wrap.cxx:171: 2021-07-14T10:44:46,713 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-14T10:44:46,713 inlined from ‘void SWIG_Python_FixMethods(PyMethodDef*, swig_const_info*, swig_type_info**, swig_type_info**)’ at core/scan_wrap.cxx:31494:22, 2021-07-14T10:44:46,713 inlined from ‘PyObject* PyInit__scan()’ at core/scan_wrap.cxx:31594:25: 2021-07-14T10:44:46,714 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 2021-07-14T10:44:46,714 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-14T10:44:46,714 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:51,543 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:44:51,544 from core/moods.h:5, 2021-07-14T10:44:51,544 from core/scan_wrap.cxx:3153: 2021-07-14T10:44:51,544 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T10:44:51,544 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:44:51,544 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:44:51,544 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:51,606 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:44:51,606 from core/moods.h:5, 2021-07-14T10:44:51,606 from core/scan_wrap.cxx:3153: 2021-07-14T10:44:51,606 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector; Difference = int]’: 2021-07-14T10:44:51,606 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:51,607 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:44:51,607 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:44:51,607 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:51,607 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:44:51,607 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:44:51,607 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:51,682 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_double_append(PyObject*, PyObject*)’: 2021-07-14T10:44:51,682 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:51,682 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:44:51,682 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:44:51,720 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_double_push_back(PyObject*, PyObject*)’: 2021-07-14T10:44:51,720 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:51,720 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:44:51,720 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:44:51,781 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:44:51,781 from core/moods.h:5, 2021-07-14T10:44:51,782 from core/scan_wrap.cxx:3153: 2021-07-14T10:44:51,782 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2021-07-14T10:44:51,782 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:44:51,782 509 | vector<_Tp, _Alloc>:: 2021-07-14T10:44:51,782 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:56,691 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MOODS::match&}; _Tp = MOODS::match; _Alloc = std::allocator]’: 2021-07-14T10:44:56,691 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:44:56,691 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:44:56,691 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:44:56,755 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:44:56,755 from core/moods.h:5, 2021-07-14T10:44:56,755 from core/scan_wrap.cxx:3153: 2021-07-14T10:44:56,756 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector; Difference = int]’: 2021-07-14T10:44:56,756 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:56,756 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:44:56,756 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:44:56,756 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:56,756 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:44:56,757 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:44:56,757 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:56,834 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_match_append(PyObject*, PyObject*)’: 2021-07-14T10:44:56,834 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:56,834 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:44:56,834 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:44:56,867 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_match_push_back(PyObject*, PyObject*)’: 2021-07-14T10:44:56,867 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:44:56,867 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:44:56,868 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:44:56,929 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:44:56,929 from core/moods.h:5, 2021-07-14T10:44:56,930 from core/scan_wrap.cxx:3153: 2021-07-14T10:44:56,930 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MOODS::match; _Alloc = std::allocator]’: 2021-07-14T10:44:56,930 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:44:56,930 509 | vector<_Tp, _Alloc>:: 2021-07-14T10:44:56,930 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:02,686 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:45:02,686 from core/moods.h:5, 2021-07-14T10:45:02,686 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:02,687 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = MOODS::match_with_variant; _Alloc = std::allocator]’: 2021-07-14T10:45:02,687 /usr/include/c++/10/bits/stl_vector.h:1379:2: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-14T10:45:02,687 1379 | insert(const_iterator __position, _InputIterator __first, 2021-07-14T10:45:02,687 | ^~~~~~ 2021-07-14T10:45:02,687 /usr/include/c++/10/bits/stl_vector.h:1379:2: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-14T10:45:02,687 /usr/include/c++/10/bits/stl_vector.h:1379:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:02,688 /usr/include/c++/10/bits/stl_vector.h:1379:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:02,688 /usr/include/c++/10/bits/stl_vector.h:1379:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:02,916 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:45:02,916 from core/moods.h:5, 2021-07-14T10:45:02,916 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:02,916 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MOODS::match_with_variant&}; _Tp = MOODS::match_with_variant; _Alloc = std::allocator]’: 2021-07-14T10:45:02,917 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:45:02,917 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:45:02,917 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:03,048 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:45:03,048 from core/moods.h:5, 2021-07-14T10:45:03,048 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:03,049 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector; Difference = int]’: 2021-07-14T10:45:03,049 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:03,049 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:45:03,049 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:45:03,049 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:03,049 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:45:03,049 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:45:03,181 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_match_variant_push_back(PyObject*, PyObject*)’: 2021-07-14T10:45:03,182 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:03,182 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:45:03,182 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:45:03,236 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_match_variant_append(PyObject*, PyObject*)’: 2021-07-14T10:45:03,236 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:03,236 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:45:03,236 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:45:03,294 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:45:03,295 from core/moods.h:5, 2021-07-14T10:45:03,295 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:03,295 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = MOODS::match_with_variant; _Alloc = std::allocator]’: 2021-07-14T10:45:03,295 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:45:03,295 184 | vector<_Tp, _Alloc>:: 2021-07-14T10:45:03,295 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:03,295 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:45:03,380 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:45:03,380 from core/moods.h:5, 2021-07-14T10:45:03,380 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:03,380 /usr/include/c++/10/bits/stl_vector.h: In function ‘void std_vector_Sl_MOODS_match_with_variant_Sg____setitem____SWIG_1(std::vector*, PySliceObject*)’: 2021-07-14T10:45:03,380 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:03,381 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-14T10:45:03,381 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:03,939 core/scan_wrap.cxx: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector; Difference = int; InputSeq = std::vector]’: 2021-07-14T10:45:03,939 core/scan_wrap.cxx:4001:23: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-14T10:45:03,939 4001 | self->insert(std::copy(is.begin(), isit, sb), isit, is.end()); 2021-07-14T10:45:03,939 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:03,939 core/scan_wrap.cxx:4001:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:03,939 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:45:03,940 from core/moods.h:5, 2021-07-14T10:45:03,940 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:03,940 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:03,940 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-14T10:45:03,940 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:03,940 core/scan_wrap.cxx:4011:23: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-14T10:45:03,940 4011 | self->insert(sb, is.begin(), is.end()); 2021-07-14T10:45:03,941 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:03,941 core/scan_wrap.cxx:4011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:04,059 core/scan_wrap.cxx: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector; Difference = int; InputSeq = std::vector]’: 2021-07-14T10:45:04,059 core/scan_wrap.cxx:4001:23: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-14T10:45:04,060 4001 | self->insert(std::copy(is.begin(), isit, sb), isit, is.end()); 2021-07-14T10:45:04,060 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:04,060 core/scan_wrap.cxx:4001:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:04,060 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:45:04,060 from core/moods.h:5, 2021-07-14T10:45:04,060 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:04,060 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:04,061 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-14T10:45:04,061 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:04,061 core/scan_wrap.cxx:4011:23: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-14T10:45:04,061 4011 | self->insert(sb, is.begin(), is.end()); 2021-07-14T10:45:04,061 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:04,061 core/scan_wrap.cxx:4011:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:04,139 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:45:04,139 from core/moods.h:5, 2021-07-14T10:45:04,139 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:04,139 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_match_variant___delslice__(PyObject*, PyObject*)’: 2021-07-14T10:45:04,140 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:04,140 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-14T10:45:04,140 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:04,201 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:45:04,201 from core/moods.h:5, 2021-07-14T10:45:04,201 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:04,201 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = MOODS::match_with_variant; _Tp = MOODS::match_with_variant; _Alloc = std::allocator]’: 2021-07-14T10:45:04,201 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:45:04,201 395 | vector<_Tp, _Alloc>:: 2021-07-14T10:45:04,202 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:04,370 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MOODS::match_with_variant; _Alloc = std::allocator]’: 2021-07-14T10:45:04,370 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:45:04,370 509 | vector<_Tp, _Alloc>:: 2021-07-14T10:45:04,370 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:10,564 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_vector_double_insert(PyObject*, PyObject*)’: 2021-07-14T10:45:10,564 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:10,564 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-14T10:45:10,565 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:10,565 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:45:10,565 from core/moods.h:5, 2021-07-14T10:45:10,566 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:10,566 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:10,566 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2021-07-14T10:45:10,566 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:10,732 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_double_resize(PyObject*, PyObject*)’: 2021-07-14T10:45:10,732 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:10,732 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-14T10:45:10,732 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:23,256 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:45:23,256 from core/moods.h:5, 2021-07-14T10:45:23,256 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:23,256 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_vector_match_insert(PyObject*, PyObject*)’: 2021-07-14T10:45:23,256 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:23,256 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-14T10:45:23,257 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:23,258 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:45:23,258 from core/moods.h:5, 2021-07-14T10:45:23,259 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:23,259 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:23,259 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2021-07-14T10:45:23,259 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:23,437 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_match_resize(PyObject*, PyObject*)’: 2021-07-14T10:45:23,437 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:23,437 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-14T10:45:23,437 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:32,734 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:45:32,734 from core/moods.h:5, 2021-07-14T10:45:32,734 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:32,734 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = MOODS::match_with_variant]’: 2021-07-14T10:45:32,735 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:32,735 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2021-07-14T10:45:32,735 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:33,560 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_vector_match_variant_insert(PyObject*, PyObject*)’: 2021-07-14T10:45:33,560 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:33,560 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2021-07-14T10:45:33,560 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:33,561 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:33,561 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-14T10:45:33,561 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:33,562 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:45:33,563 from core/moods.h:5, 2021-07-14T10:45:33,563 from core/scan_wrap.cxx:3153: 2021-07-14T10:45:33,563 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:33,563 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2021-07-14T10:45:33,563 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:33,751 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_match_variant_resize(PyObject*, PyObject*)’: 2021-07-14T10:45:33,751 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:33,751 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-14T10:45:33,752 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:33,968 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_match_variant_erase(PyObject*, PyObject*)’: 2021-07-14T10:45:33,968 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:33,968 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-14T10:45:33,968 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:53,715 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/scanner.cpp -o build/temp.linux-armv7l-3.9/core/scanner.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:45:57,586 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:45:57,586 from core/moods.h:5, 2021-07-14T10:45:57,586 from core/scanner.cpp:16: 2021-07-14T10:45:57,587 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MOODS::scan::scanner_output&}; _Tp = MOODS::scan::scanner_output; _Alloc = std::allocator]’: 2021-07-14T10:45:57,587 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:45:57,587 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:45:57,587 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:57,666 /usr/include/c++/10/bits/vector.tcc: In member function ‘void MOODS::scan::Scanner::initialise_hit_table()’: 2021-07-14T10:45:57,666 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:57,666 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:45:57,666 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:58,616 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MOODS::match}; _Tp = MOODS::match; _Alloc = std::allocator]’: 2021-07-14T10:45:58,616 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:45:58,617 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:45:58,617 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:58,862 /usr/include/c++/10/bits/vector.tcc: In member function ‘void MOODS::scan::Scanner::process_matches(const string&, T&) [with T = MOODS::scan::MaxHitsMH]’: 2021-07-14T10:45:58,862 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:58,862 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:45:58,862 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:58,864 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:58,864 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:45:58,864 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:58,864 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:58,865 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:45:58,865 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:58,866 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:58,866 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:45:58,866 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:59,518 /usr/include/c++/10/bits/vector.tcc: In member function ‘void MOODS::scan::Scanner::process_matches(const string&, T&) [with T = MOODS::scan::AllHitsMH]’: 2021-07-14T10:45:59,519 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:59,519 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:45:59,519 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:59,519 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:59,519 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:45:59,519 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:59,520 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:59,520 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:45:59,520 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:59,520 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:45:59,521 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:45:59,521 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:45:59,883 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MOODS::match_with_variant}; _Tp = MOODS::match_with_variant; _Alloc = std::allocator]’: 2021-07-14T10:45:59,884 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:45:59,884 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:45:59,884 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:00,088 /usr/include/c++/10/bits/vector.tcc: In member function ‘void MOODS::scan::Scanner::variant_matches_recursive(std::vector >&, const MOODS::scan::state&, const string&, const std::vector&, int)’: 2021-07-14T10:46:00,089 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:00,089 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T10:46:00,089 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:03,079 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/core/match_types.o build/temp.linux-armv7l-3.9/core/moods_misc.o build/temp.linux-armv7l-3.9/core/moods_scan.o build/temp.linux-armv7l-3.9/core/moods_tools.o build/temp.linux-armv7l-3.9/core/motif_0.o build/temp.linux-armv7l-3.9/core/motif_h.o build/temp.linux-armv7l-3.9/core/scan_wrap.o build/temp.linux-armv7l-3.9/core/scanner.o -o build/lib.linux-armv7l-3.9/MOODS/_scan.cpython-39-arm-linux-gnueabihf.so 2021-07-14T10:46:04,291 building 'MOODS._parsers' extension 2021-07-14T10:46:04,291 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/match_types.cpp -o build/temp.linux-armv7l-3.9/core/match_types.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:46:05,167 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/moods_misc.cpp -o build/temp.linux-armv7l-3.9/core/moods_misc.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:46:06,397 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/moods_parsers.cpp -o build/temp.linux-armv7l-3.9/core/moods_parsers.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:46:08,372 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:46:08,372 from core/moods.h:5, 2021-07-14T10:46:08,373 from core/moods_parsers.cpp:10: 2021-07-14T10:46:08,373 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T10:46:08,373 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:46:08,373 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:46:08,373 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:08,479 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:46:08,480 from core/moods.h:5, 2021-07-14T10:46:08,480 from core/moods_parsers.cpp:10: 2021-07-14T10:46:08,480 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector > MOODS::parsers::read_table(const string&)’: 2021-07-14T10:46:08,480 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:08,480 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:46:08,480 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:46:09,463 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/moods_tools.cpp -o build/temp.linux-armv7l-3.9/core/moods_tools.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:46:10,291 core/moods_tools.cpp: In function ‘double MOODS::tools::threshold_from_p(const score_matrix&, const std::vector&, const double&)’: 2021-07-14T10:46:10,291 core/moods_tools.cpp:155:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,291 155 | for (size_t i = 0; i < n; ++i) 2021-07-14T10:46:10,291 | ~~^~~ 2021-07-14T10:46:10,292 core/moods_tools.cpp:157:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,292 157 | for (size_t j = 0; j < a; ++j) 2021-07-14T10:46:10,292 | ~~^~~ 2021-07-14T10:46:10,292 core/moods_tools.cpp:168:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,292 168 | for (size_t i = 0; i < n; ++i) 2021-07-14T10:46:10,292 | ~~^~~ 2021-07-14T10:46:10,293 core/moods_tools.cpp:172:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,293 172 | for (size_t j = 1; j < a; ++j) 2021-07-14T10:46:10,293 | ~~^~~ 2021-07-14T10:46:10,293 core/moods_tools.cpp:190:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,293 190 | for (size_t j = 0; j < a; ++j) 2021-07-14T10:46:10,294 | ~~^~~ 2021-07-14T10:46:10,294 core/moods_tools.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,294 193 | for (size_t i = 1; i < n; ++i) 2021-07-14T10:46:10,294 | ~~^~~ 2021-07-14T10:46:10,294 core/moods_tools.cpp:195:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,294 195 | for (size_t j = 0; j < a; ++j) 2021-07-14T10:46:10,294 | ~~^~~ 2021-07-14T10:46:10,300 core/moods_tools.cpp: In function ‘score_matrix MOODS::tools::log_odds(const std::vector >&, const std::vector >&, const std::vector&, double, std::size_t)’: 2021-07-14T10:46:10,301 core/moods_tools.cpp:320:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:46:10,301 320 | for (size_t PCODE = 0; PCODE < 1 << (SHIFT * r); ++PCODE ){ 2021-07-14T10:46:10,301 | ~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:10,301 core/moods_tools.cpp:328:46: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:46:10,302 328 | for (size_t SCODE = 0; SCODE < 1 << (SHIFT * (q - r - 1)); ++SCODE){ 2021-07-14T10:46:10,302 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:10,310 core/moods_tools.cpp: In function ‘double MOODS::tools::threshold_from_p(const score_matrix&, const std::vector&, const double&, std::size_t)’: 2021-07-14T10:46:10,310 core/moods_tools.cpp:454:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,310 454 | for (size_t i = 0; i < cols; ++i) 2021-07-14T10:46:10,310 | ~~^~~~~~ 2021-07-14T10:46:10,310 core/moods_tools.cpp:456:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,311 456 | for (size_t CODE = 0; CODE < rows; ++CODE) 2021-07-14T10:46:10,311 | ~~~~~^~~~~~ 2021-07-14T10:46:10,311 core/moods_tools.cpp:468:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,311 468 | for (size_t i = 0; i < cols; ++i) 2021-07-14T10:46:10,311 | ~~^~~~~~ 2021-07-14T10:46:10,311 core/moods_tools.cpp:472:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,311 472 | for (size_t CODE = 1; CODE < rows; ++CODE) 2021-07-14T10:46:10,312 | ~~~~~^~~~~~ 2021-07-14T10:46:10,312 core/moods_tools.cpp:489:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:46:10,312 489 | for (size_t CODE = 0; CODE < (1 << (SHIFT * q)); ++CODE){ 2021-07-14T10:46:10,312 | ~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:10,313 core/moods_tools.cpp:500:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T10:46:10,313 500 | for (size_t i = 1; i < cols; ++i) 2021-07-14T10:46:10,313 | ~~^~~~~~ 2021-07-14T10:46:10,313 core/moods_tools.cpp:503:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T10:46:10,313 503 | for (size_t CODE = 0; CODE < (1 << (SHIFT * q)); ++CODE) 2021-07-14T10:46:10,314 | ~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:14,637 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icore/ -I/usr/include/python3.9 -c core/parsers_wrap.cxx -o build/temp.linux-armv7l-3.9/core/parsers_wrap.o -march=native -O3 -fPIC --std=c++11 2021-07-14T10:46:17,074 core/parsers_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’: 2021-07-14T10:46:17,074 core/parsers_wrap.cxx:3738:64: required from ‘Type swig::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]’ 2021-07-14T10:46:17,074 core/parsers_wrap.cxx:4301:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = std::vector]’ 2021-07-14T10:46:17,075 core/parsers_wrap.cxx:4552:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]’ 2021-07-14T10:46:17,075 core/parsers_wrap.cxx:4574:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::vector; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]’ 2021-07-14T10:46:17,075 core/parsers_wrap.cxx:4628:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = std::vector; PyObject = _object]’ 2021-07-14T10:46:17,075 core/parsers_wrap.cxx:3630:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]’ 2021-07-14T10:46:17,075 core/parsers_wrap.cxx:10066:34: required from here 2021-07-14T10:46:17,075 core/parsers_wrap.cxx:3713:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘class std::vector’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 2021-07-14T10:46:17,076 3713 | memset(v_def,0,sizeof(Type)); 2021-07-14T10:46:17,076 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:17,076 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:46:17,076 from core/moods.h:5, 2021-07-14T10:46:17,076 from core/parsers_wrap.cxx:3133: 2021-07-14T10:46:17,076 /usr/include/c++/10/bits/stl_vector.h:389:11: note: ‘class std::vector’ declared here 2021-07-14T10:46:17,076 389 | class vector : protected _Vector_base<_Tp, _Alloc> 2021-07-14T10:46:17,077 | ^~~~~~ 2021-07-14T10:46:25,550 In file included from /usr/include/string.h:495, 2021-07-14T10:46:25,550 from /usr/include/python3.9/Python.h:30, 2021-07-14T10:46:25,550 from core/parsers_wrap.cxx:171: 2021-07-14T10:46:25,550 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-14T10:46:25,550 inlined from ‘void SWIG_Python_FixMethods(PyMethodDef*, swig_const_info*, swig_type_info**, swig_type_info**)’ at core/parsers_wrap.cxx:13249:22, 2021-07-14T10:46:25,550 inlined from ‘PyObject* PyInit__parsers()’ at core/parsers_wrap.cxx:13349:25: 2021-07-14T10:46:25,551 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 2021-07-14T10:46:25,551 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-14T10:46:25,551 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:27,671 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:46:27,672 from core/moods.h:5, 2021-07-14T10:46:27,672 from core/parsers_wrap.cxx:3133: 2021-07-14T10:46:27,672 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T10:46:27,672 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:46:27,672 426 | vector<_Tp, _Alloc>:: 2021-07-14T10:46:27,672 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:27,735 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:46:27,735 from core/moods.h:5, 2021-07-14T10:46:27,735 from core/parsers_wrap.cxx:3133: 2021-07-14T10:46:27,735 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector; Difference = int]’: 2021-07-14T10:46:27,736 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:27,736 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:46:27,736 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:46:27,736 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:27,736 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:46:27,736 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:46:27,736 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:27,813 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_double_append(PyObject*, PyObject*)’: 2021-07-14T10:46:27,813 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:27,813 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:46:27,813 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:46:27,851 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_double_push_back(PyObject*, PyObject*)’: 2021-07-14T10:46:27,851 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:27,851 1198 | _M_realloc_insert(end(), __x); 2021-07-14T10:46:27,851 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T10:46:27,913 In file included from /usr/include/c++/10/vector:72, 2021-07-14T10:46:27,914 from core/moods.h:5, 2021-07-14T10:46:27,914 from core/parsers_wrap.cxx:3133: 2021-07-14T10:46:27,914 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2021-07-14T10:46:27,914 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T10:46:27,914 509 | vector<_Tp, _Alloc>:: 2021-07-14T10:46:27,914 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:31,967 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_vector_double_insert(PyObject*, PyObject*)’: 2021-07-14T10:46:31,968 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:31,968 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-14T10:46:31,968 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:31,970 In file included from /usr/include/c++/10/vector:67, 2021-07-14T10:46:31,970 from core/moods.h:5, 2021-07-14T10:46:31,970 from core/parsers_wrap.cxx:3133: 2021-07-14T10:46:31,971 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:31,971 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2021-07-14T10:46:31,971 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:32,241 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_vector_double_resize(PyObject*, PyObject*)’: 2021-07-14T10:46:32,242 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T10:46:32,242 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-14T10:46:32,242 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T10:46:42,487 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/core/match_types.o build/temp.linux-armv7l-3.9/core/moods_misc.o build/temp.linux-armv7l-3.9/core/moods_parsers.o build/temp.linux-armv7l-3.9/core/moods_tools.o build/temp.linux-armv7l-3.9/core/parsers_wrap.o -o build/lib.linux-armv7l-3.9/MOODS/_parsers.cpython-39-arm-linux-gnueabihf.so 2021-07-14T10:46:43,009 installing to build/bdist.linux-armv7l/wheel 2021-07-14T10:46:43,010 running install 2021-07-14T10:46:43,011 running install_lib 2021-07-14T10:46:43,015 creating build/bdist.linux-armv7l 2021-07-14T10:46:43,015 creating build/bdist.linux-armv7l/wheel 2021-07-14T10:46:43,017 creating build/bdist.linux-armv7l/wheel/MOODS 2021-07-14T10:46:43,018 copying build/lib.linux-armv7l-3.9/MOODS/tools.py -> build/bdist.linux-armv7l/wheel/MOODS 2021-07-14T10:46:43,020 copying build/lib.linux-armv7l-3.9/MOODS/_scan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MOODS 2021-07-14T10:46:43,258 copying build/lib.linux-armv7l-3.9/MOODS/_parsers.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MOODS 2021-07-14T10:46:43,328 copying build/lib.linux-armv7l-3.9/MOODS/__init__.py -> build/bdist.linux-armv7l/wheel/MOODS 2021-07-14T10:46:43,330 copying build/lib.linux-armv7l-3.9/MOODS/_tools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MOODS 2021-07-14T10:46:43,431 copying build/lib.linux-armv7l-3.9/MOODS/scan.py -> build/bdist.linux-armv7l/wheel/MOODS 2021-07-14T10:46:43,434 copying build/lib.linux-armv7l-3.9/MOODS/parsers.py -> build/bdist.linux-armv7l/wheel/MOODS 2021-07-14T10:46:43,437 copying build/lib.linux-armv7l-3.9/MOODS/misc.py -> build/bdist.linux-armv7l/wheel/MOODS 2021-07-14T10:46:43,439 running install_egg_info 2021-07-14T10:46:43,475 running egg_info 2021-07-14T10:46:43,476 creating MOODS_python.egg-info 2021-07-14T10:46:43,478 writing MOODS_python.egg-info/PKG-INFO 2021-07-14T10:46:43,484 writing dependency_links to MOODS_python.egg-info/dependency_links.txt 2021-07-14T10:46:43,486 writing top-level names to MOODS_python.egg-info/top_level.txt 2021-07-14T10:46:43,489 writing manifest file 'MOODS_python.egg-info/SOURCES.txt' 2021-07-14T10:46:43,538 reading manifest file 'MOODS_python.egg-info/SOURCES.txt' 2021-07-14T10:46:43,544 writing manifest file 'MOODS_python.egg-info/SOURCES.txt' 2021-07-14T10:46:43,545 Copying MOODS_python.egg-info to build/bdist.linux-armv7l/wheel/MOODS_python-1.9.3.1-py3.9.egg-info 2021-07-14T10:46:43,554 running install_scripts 2021-07-14T10:46:43,632 creating build/bdist.linux-armv7l/wheel/MOODS_python-1.9.3.1.dist-info/WHEEL 2021-07-14T10:46:43,635 creating '/tmp/pip-wheel-dh8xlagn/MOODS_python-1.9.3.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T10:46:43,637 adding 'MOODS/__init__.py' 2021-07-14T10:46:44,223 adding 'MOODS/_parsers.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T10:46:46,059 adding 'MOODS/_scan.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T10:46:46,834 adding 'MOODS/_tools.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T10:46:46,869 adding 'MOODS/misc.py' 2021-07-14T10:46:46,871 adding 'MOODS/parsers.py' 2021-07-14T10:46:46,874 adding 'MOODS/scan.py' 2021-07-14T10:46:46,877 adding 'MOODS/tools.py' 2021-07-14T10:46:46,879 adding 'MOODS_python-1.9.3.1.dist-info/METADATA' 2021-07-14T10:46:46,880 adding 'MOODS_python-1.9.3.1.dist-info/WHEEL' 2021-07-14T10:46:46,880 adding 'MOODS_python-1.9.3.1.dist-info/top_level.txt' 2021-07-14T10:46:46,881 adding 'MOODS_python-1.9.3.1.dist-info/RECORD' 2021-07-14T10:46:46,975 removing build/bdist.linux-armv7l/wheel 2021-07-14T10:46:47,084 Building wheel for moods-python (setup.py): finished with status 'done' 2021-07-14T10:46:47,159 Created wheel for moods-python: filename=MOODS_python-1.9.3.1-cp39-cp39-linux_armv7l.whl size=5964270 sha256=b8a1baa518236789c1510cd5d7ea383f2c2d764857ee57ffa4a79e023dfe1e5d 2021-07-14T10:46:47,160 Stored in directory: /tmp/pip-ephem-wheel-cache-r5b3hscv/wheels/85/6e/7b/39dda7e6af286d3d291f617fb0f1435a4e85dfb2afb4b1aafd 2021-07-14T10:46:47,172 Successfully built moods-python 2021-07-14T10:46:47,371 Removed build tracker: '/tmp/pip-req-tracker-r5ub71i0'