2021-07-14T11:27:33,703 Created temporary directory: /tmp/pip-ephem-wheel-cache-iy57w8tj 2021-07-14T11:27:33,706 Created temporary directory: /tmp/pip-req-tracker-te1ln79s 2021-07-14T11:27:33,706 Initialized build tracking at /tmp/pip-req-tracker-te1ln79s 2021-07-14T11:27:33,706 Created build tracker: /tmp/pip-req-tracker-te1ln79s 2021-07-14T11:27:33,706 Entered build tracker: /tmp/pip-req-tracker-te1ln79s 2021-07-14T11:27:33,707 Created temporary directory: /tmp/pip-wheel-6nqc0mm2 2021-07-14T11:27:33,736 1 location(s) to search for versions of asap3: 2021-07-14T11:27:33,736 * https://pypi.org/simple/asap3/ 2021-07-14T11:27:33,736 Fetching project page and analyzing links: https://pypi.org/simple/asap3/ 2021-07-14T11:27:33,737 Getting page https://pypi.org/simple/asap3/ 2021-07-14T11:27:33,739 Found index url https://pypi.org/simple 2021-07-14T11:27:33,923 Found link https://files.pythonhosted.org/packages/b3/18/a0fd1f238ed751f8882f815a62354e9e6df3077a9afe218d7754a2fd6a5d/asap3-3.9.6.tar.gz#sha256=9c2895508d6ef7806769ff2bd7d783a895b145543cf906d886192ae0ffc2280d (from https://pypi.org/simple/asap3/), version: 3.9.6 2021-07-14T11:27:33,924 Found link https://files.pythonhosted.org/packages/6d/4b/7623da3d3d4086c524a94def4340bf1e1b4aee1c935420fad6123b20d678/asap3-3.10.0.tar.gz#sha256=4ccb0640ce65acecccd4e871353d6cf94521577507c397623a31e47cf6c624eb (from https://pypi.org/simple/asap3/), version: 3.10.0 2021-07-14T11:27:33,924 Found link https://files.pythonhosted.org/packages/a8/18/3552565db206a682f6c934e8f1291a71095f21b6387d3d2c284c071efe11/asap3-3.10.2.tar.gz#sha256=60ec50c9c50d1b3115edde2ab8f2f42370e08f6eb15c14de0350724d78c47df1 (from https://pypi.org/simple/asap3/), version: 3.10.2 2021-07-14T11:27:33,924 Found link https://files.pythonhosted.org/packages/46/93/a36962deb1049cd6c189fc9944213a7456fc78d7158273a4cf494503e4b0/asap3-3.10.3.tar.gz#sha256=9fabec07296c83fc33c41ac2475e57bd3a2ef688a8364bc3000e70b7195c396e (from https://pypi.org/simple/asap3/), version: 3.10.3 2021-07-14T11:27:33,924 Found link https://files.pythonhosted.org/packages/51/a7/753ffcd46d2da6bb3d07bbe7e2bf320b71e19568b43fc9f3f774cf741f33/asap3-3.10.5.tar.gz#sha256=909682a35b7336bb7deaaa75f697ba26affbff27ad17e3b9fca4a1b3717206c7 (from https://pypi.org/simple/asap3/), version: 3.10.5 2021-07-14T11:27:33,925 Found link https://files.pythonhosted.org/packages/21/ee/fcceabc5e6c11a3398a1039f4ca39c627fafe6176cc6540aedb75f4384f6/asap3-3.10.6.tar.gz#sha256=832ab0e94903efe9ee632db20c56ed605386fc2e62bf863ae3bf81092047ae95 (from https://pypi.org/simple/asap3/), version: 3.10.6 2021-07-14T11:27:33,925 Found link https://files.pythonhosted.org/packages/28/af/109859a068fb8f90b0fa9a594486480b8ae7e9f911593441d8ce82a0f9dd/asap3-3.10.7.tar.gz#sha256=20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773 (from https://pypi.org/simple/asap3/), version: 3.10.7 2021-07-14T11:27:33,925 Found link https://files.pythonhosted.org/packages/2a/66/8dec58eb472f7855d0837b93daa75825a7bc243b773566902d00b043be18/asap3-3.10.8.tar.gz#sha256=a167e89c717cc75c1ff41bb370b9454563c29333e49b7383e668094af547d139 (from https://pypi.org/simple/asap3/), version: 3.10.8 2021-07-14T11:27:33,926 Found link https://files.pythonhosted.org/packages/31/d5/4dea3371c9d83192c450b8905074653276fb33e9f0e20207471cc0025d09/asap3-3.10.10.tar.gz#sha256=58cc70379ff3de727ad2e19882082c40a4780c72ae86e21decd15a8df1e202f0 (from https://pypi.org/simple/asap3/), version: 3.10.10 2021-07-14T11:27:33,926 Found link https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 (from https://pypi.org/simple/asap3/), version: 3.11.3 2021-07-14T11:27:33,926 Found link https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a (from https://pypi.org/simple/asap3/), version: 3.11.5 2021-07-14T11:27:33,926 Found link https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 (from https://pypi.org/simple/asap3/), version: 3.11.6 2021-07-14T11:27:33,927 Found link https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b (from https://pypi.org/simple/asap3/), version: 3.11.8 2021-07-14T11:27:33,927 Found link https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce (from https://pypi.org/simple/asap3/), version: 3.11.9 2021-07-14T11:27:33,927 Found link https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 (from https://pypi.org/simple/asap3/), version: 3.11.10 2021-07-14T11:27:33,928 Found link https://files.pythonhosted.org/packages/3a/52/77063f553b0ded38f99f97c06ee7c81cc9bfeda82b571bdcb25957f80b04/asap3-3.12.1.tar.gz#sha256=6852d7b3f668b8f740f1be7a0b8ead6b831cb1c381b02448e3e9a578d9efb182 (from https://pypi.org/simple/asap3/), version: 3.12.1 2021-07-14T11:27:33,928 Found link https://files.pythonhosted.org/packages/dd/fc/d1953b172e106f00e1cc19c0f830746cb2dec3d1cdeb5ad0ce4347f5a4d9/asap3-3.12.2.tar.gz#sha256=b6c03c790ba4c9f0d231659078c26ce8193fa21314bf2fe4adaa7899d5cd9dbe (from https://pypi.org/simple/asap3/), version: 3.12.2 2021-07-14T11:27:33,928 Found link https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 (from https://pypi.org/simple/asap3/), version: 3.12.3 2021-07-14T11:27:33,928 Found link https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 (from https://pypi.org/simple/asap3/), version: 3.12.7 2021-07-14T11:27:33,929 Found link https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 (from https://pypi.org/simple/asap3/), version: 3.12.8 2021-07-14T11:27:33,929 Skipping link: not a file: https://pypi.org/simple/asap3/ 2021-07-14T11:27:33,952 Given no hashes to check 1 links for project 'asap3': discarding no candidates 2021-07-14T11:27:33,971 Collecting asap3==3.11.8 2021-07-14T11:27:33,973 Created temporary directory: /tmp/pip-unpack-wdtsbvrz 2021-07-14T11:27:34,016 Downloading asap3-3.11.8.tar.gz (801 kB) 2021-07-14T11:27:35,192 Added asap3==3.11.8 from https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b to build tracker '/tmp/pip-req-tracker-te1ln79s' 2021-07-14T11:27:35,193 Running setup.py (path:/tmp/pip-wheel-6nqc0mm2/asap3_ec96875230f74e36b902d1930dcf602e/setup.py) egg_info for package asap3 2021-07-14T11:27:35,194 Created temporary directory: /tmp/pip-pip-egg-info-tekvj9xt 2021-07-14T11:27:35,194 Running command python setup.py egg_info 2021-07-14T11:27:36,731 Asap version number: 3.11.8 2021-07-14T11:27:36,732 customize-local.py not found - this is OK. 2021-07-14T11:27:36,732 customize-piwheels45.py not found - this is OK. 2021-07-14T11:27:36,732 Reading customization from customize.py 2021-07-14T11:27:36,732 Recording version info into VersionInfo_autogen 2021-07-14T11:27:36,732 CC = arm-linux-gnueabihf-gcc -pthread 2021-07-14T11:27:36,733 CFLAGS = -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 2021-07-14T11:27:36,733 Identifying source files 2021-07-14T11:27:36,733 Identifying Python submodules 2021-07-14T11:27:36,733 running egg_info 2021-07-14T11:27:36,734 creating /tmp/pip-pip-egg-info-tekvj9xt/asap3.egg-info 2021-07-14T11:27:36,735 writing /tmp/pip-pip-egg-info-tekvj9xt/asap3.egg-info/PKG-INFO 2021-07-14T11:27:36,737 writing dependency_links to /tmp/pip-pip-egg-info-tekvj9xt/asap3.egg-info/dependency_links.txt 2021-07-14T11:27:36,739 writing top-level names to /tmp/pip-pip-egg-info-tekvj9xt/asap3.egg-info/top_level.txt 2021-07-14T11:27:36,741 writing manifest file '/tmp/pip-pip-egg-info-tekvj9xt/asap3.egg-info/SOURCES.txt' 2021-07-14T11:27:36,934 reading manifest file '/tmp/pip-pip-egg-info-tekvj9xt/asap3.egg-info/SOURCES.txt' 2021-07-14T11:27:36,937 reading manifest template 'MANIFEST.in' 2021-07-14T11:27:36,996 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T11:27:36,997 adding license file 'LICENSE' 2021-07-14T11:27:36,997 adding license file 'LICENSE.LESSER' 2021-07-14T11:27:37,015 writing manifest file '/tmp/pip-pip-egg-info-tekvj9xt/asap3.egg-info/SOURCES.txt' 2021-07-14T11:27:37,125 Source in /tmp/pip-wheel-6nqc0mm2/asap3_ec96875230f74e36b902d1930dcf602e has version 3.11.8, which satisfies requirement asap3==3.11.8 from https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b 2021-07-14T11:27:37,126 Removed asap3==3.11.8 from https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b from build tracker '/tmp/pip-req-tracker-te1ln79s' 2021-07-14T11:27:37,130 Created temporary directory: /tmp/pip-unpack-3jrxq9hs 2021-07-14T11:27:37,130 Building wheels for collected packages: asap3 2021-07-14T11:27:37,134 Created temporary directory: /tmp/pip-wheel-uxpaowm8 2021-07-14T11:27:37,135 Building wheel for asap3 (setup.py): started 2021-07-14T11:27:37,135 Destination directory: /tmp/pip-wheel-uxpaowm8 2021-07-14T11:27:37,135 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6nqc0mm2/asap3_ec96875230f74e36b902d1930dcf602e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6nqc0mm2/asap3_ec96875230f74e36b902d1930dcf602e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-uxpaowm8 2021-07-14T11:27:38,404 Asap version number: 3.11.8 2021-07-14T11:27:38,405 customize-local.py not found - this is OK. 2021-07-14T11:27:38,405 customize-piwheels45.py not found - this is OK. 2021-07-14T11:27:38,405 Reading customization from customize.py 2021-07-14T11:27:38,421 Identifying source files 2021-07-14T11:27:38,425 Identifying Python submodules 2021-07-14T11:27:38,623 running bdist_wheel 2021-07-14T11:27:38,626 running build 2021-07-14T11:27:38,626 running build_py 2021-07-14T11:27:38,764 creating build 2021-07-14T11:27:38,764 creating build/lib.linux-armv7l-3.9 2021-07-14T11:27:38,765 creating build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,766 copying Python/asap3/GuptaParameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,768 copying Python/asap3/constraints.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,770 copying Python/asap3/EMT2011Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,771 copying Python/asap3/EMT2011_py.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,774 copying Python/asap3/__init__.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,776 copying Python/asap3/fixepydoc.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,777 copying Python/asap3/timing.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,779 copying Python/asap3/memory.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,780 copying Python/asap3/EMT2013Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,782 copying Python/asap3/version.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,784 copying Python/asap3/testtools.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,786 copying Python/asap3/mpi.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:38,789 creating build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,790 copying Python/asap3/analysis/findcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,792 copying Python/asap3/analysis/averagepositions.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,795 copying Python/asap3/analysis/ptm.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,797 copying Python/asap3/analysis/rdf.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,800 copying Python/asap3/analysis/__init__.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,802 copying Python/asap3/analysis/localstructure.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,805 copying Python/asap3/analysis/clusterposition.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,807 copying Python/asap3/analysis/cutcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,809 copying Python/asap3/analysis/particle.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:38,811 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:38,812 copying Python/asap3/MonteCarlo/Basin.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:38,814 copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:38,816 copying Python/asap3/MonteCarlo/Start.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:38,818 copying Python/asap3/MonteCarlo/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:38,820 copying Python/asap3/MonteCarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:38,823 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T11:27:38,824 copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T11:27:38,826 copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T11:27:38,828 copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T11:27:38,831 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T11:27:38,832 copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T11:27:38,834 copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T11:27:38,836 copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T11:27:38,839 creating build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,840 copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,843 copying Python/asap3/Internal/Builtins.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,845 copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,848 copying Python/asap3/Internal/checkversion.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,849 copying Python/asap3/Internal/Collector.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,852 copying Python/asap3/Internal/CheckArray.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,853 copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,856 copying Python/asap3/Internal/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,857 copying Python/asap3/Internal/Threads.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,859 copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,861 copying Python/asap3/Internal/ListOfElements.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,863 copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,865 copying Python/asap3/Internal/EMTParameters.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,867 copying Python/asap3/Internal/Subject.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:38,869 creating build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T11:27:38,870 copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T11:27:38,873 creating build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,874 copying Python/asap3/Tools/Timing.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,876 copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,878 copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,880 copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,882 copying Python/asap3/Tools/MaterialProperties.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,884 copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,886 copying Python/asap3/Tools/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,888 copying Python/asap3/Tools/ElasticConstants.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,890 copying Python/asap3/Tools/niflheim.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,892 copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:38,895 creating build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,896 copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,897 copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,900 copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,902 copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,904 copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,908 copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,910 copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,912 copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,915 copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,917 copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,919 copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:38,922 creating build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,923 copying Python/asap3/md/verlet.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,925 copying Python/asap3/md/npt.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,927 copying Python/asap3/md/langevin.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,929 copying Python/asap3/md/md.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,931 copying Python/asap3/md/nvtberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,932 copying Python/asap3/md/__init__.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,934 copying Python/asap3/md/verlet_fast.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,936 copying Python/asap3/md/nptberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,938 copying Python/asap3/md/velocitydistribution.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:38,940 creating build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:38,941 copying Python/asap3/io/cpu_setup.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:38,943 copying Python/asap3/io/bundletrajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:38,946 copying Python/asap3/io/__init__.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:38,948 copying Python/asap3/io/trajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:38,950 copying Python/asap3/io/ReadOldFiles.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:38,953 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,953 copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,955 copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,957 copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,960 copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,962 copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,964 copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,965 copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,967 copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,969 copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:38,972 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:38,973 copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:38,975 copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:38,977 copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:38,978 copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:38,982 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:27:38,982 copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:27:38,986 copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:27:38,989 copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:27:38,992 creating build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:38,992 copying Python/asap3/optimize/optimize.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:38,994 copying Python/asap3/optimize/mdmin.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:38,996 copying Python/asap3/optimize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:38,998 copying Python/asap3/optimize/fire.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:39,000 creating build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:39,001 copying Python/asap3/setup/displacementfield.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:39,003 copying Python/asap3/setup/multidislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:39,005 copying Python/asap3/setup/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:39,007 copying Python/asap3/setup/VelocityDistribution.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:39,009 copying Python/asap3/setup/dislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:39,012 creating build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,013 copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,015 copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,017 copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,020 copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,023 copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,037 copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,048 copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,050 copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,053 copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:39,074 running build_ext 2021-07-14T11:27:39,080 building '_asap_p3' extension 2021-07-14T11:27:39,082 creating build/temp.linux-armv7l-3.9 2021-07-14T11:27:39,082 creating build/temp.linux-armv7l-3.9/Basics 2021-07-14T11:27:39,083 creating build/temp.linux-armv7l-3.9/Brenner 2021-07-14T11:27:39,085 creating build/temp.linux-armv7l-3.9/Interface 2021-07-14T11:27:39,085 creating build/temp.linux-armv7l-3.9/PTM 2021-07-14T11:27:39,087 creating build/temp.linux-armv7l-3.9/PTM/qcprot 2021-07-14T11:27:39,087 creating build/temp.linux-armv7l-3.9/PTM/voronoi 2021-07-14T11:27:39,088 creating build/temp.linux-armv7l-3.9/Potentials 2021-07-14T11:27:39,089 creating build/temp.linux-armv7l-3.9/Tools 2021-07-14T11:27:39,090 creating build/temp.linux-armv7l-3.9/VersionInfo_autogen 2021-07-14T11:27:39,090 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/AsapObject.cpp -o build/temp.linux-armv7l-3.9/Basics/AsapObject.o 2021-07-14T11:27:40,144 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Debug.cpp -o build/temp.linux-armv7l-3.9/Basics/Debug.o 2021-07-14T11:27:41,695 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/DynamicAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o 2021-07-14T11:27:44,391 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Exception.cpp -o build/temp.linux-armv7l-3.9/Basics/Exception.o 2021-07-14T11:27:46,582 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImageAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o 2021-07-14T11:27:48,103 In file included from Basics/AsapPython.h:44, 2021-07-14T11:27:48,103 from Basics/ImageAtoms.h:31, 2021-07-14T11:27:48,103 from Basics/ImageAtoms.cpp:27: 2021-07-14T11:27:48,103 Basics/ImageAtoms.cpp: In destructor ‘virtual AsapNS::ImageAtoms::~ImageAtoms()’: 2021-07-14T11:27:48,103 Basics/Exception.h:158:5: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 2021-07-14T11:27:48,104 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T11:27:48,104 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:27:48,104 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T11:27:48,104 52 | ASSERT(refcount == 0); 2021-07-14T11:27:48,104 | ^~~~~~ 2021-07-14T11:27:48,104 Basics/Exception.h:158:5: note: in C++11 destructors default to ‘noexcept’ 2021-07-14T11:27:48,105 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T11:27:48,105 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:27:48,105 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T11:27:48,105 52 | ASSERT(refcount == 0); 2021-07-14T11:27:48,105 | ^~~~~~ 2021-07-14T11:27:48,105 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T11:27:48,106 Basics/ImageAtoms.cpp:82:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,106 82 | if (pos.capacity() < nTot) 2021-07-14T11:27:48,106 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:27:48,106 In file included from Basics/AsapPython.h:44, 2021-07-14T11:27:48,106 from Basics/ImageAtoms.h:31, 2021-07-14T11:27:48,107 from Basics/ImageAtoms.cpp:27: 2021-07-14T11:27:48,107 Basics/ImageAtoms.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,107 84 | ASSERT(allpositions.size() >= nTot); 2021-07-14T11:27:48,107 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:27:48,107 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:27:48,107 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:27:48,107 | ^~ 2021-07-14T11:27:48,111 Basics/ImageAtoms.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,111 86 | ASSERT(pos.size() == nTot); 2021-07-14T11:27:48,111 | ~~~~~~~~~~~^~~~~~~ 2021-07-14T11:27:48,111 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:27:48,112 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:27:48,112 | ^~ 2021-07-14T11:27:48,112 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T11:27:48,112 Basics/ImageAtoms.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,112 95 | ASSERT(allpositions.size() >= n); 2021-07-14T11:27:48,112 | ~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T11:27:48,113 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:27:48,113 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:27:48,113 | ^~ 2021-07-14T11:27:48,113 Basics/ImageAtoms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,113 97 | if (pos.capacity() < n) 2021-07-14T11:27:48,113 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T11:27:48,132 In file included from Basics/AsapPython.h:44, 2021-07-14T11:27:48,133 from Basics/ImageAtoms.h:31, 2021-07-14T11:27:48,133 from Basics/ImageAtoms.cpp:27: 2021-07-14T11:27:48,133 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::make_images(double)’: 2021-07-14T11:27:48,133 Basics/ImageAtoms.cpp:170:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,133 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); 2021-07-14T11:27:48,134 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:27:48,134 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:27:48,134 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:27:48,134 | ^~ 2021-07-14T11:27:48,137 Basics/ImageAtoms.cpp:221:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,137 221 | if (allpositions.capacity() < nSize) 2021-07-14T11:27:48,137 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:27:48,137 Basics/ImageAtoms.cpp:223:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,137 223 | if (allnumbers.capacity() < nSize) 2021-07-14T11:27:48,138 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:27:48,139 In file included from Basics/AsapPython.h:44, 2021-07-14T11:27:48,139 from Basics/ImageAtoms.h:31, 2021-07-14T11:27:48,139 from Basics/ImageAtoms.cpp:27: 2021-07-14T11:27:48,139 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::update_images()’: 2021-07-14T11:27:48,139 Basics/ImageAtoms.cpp:238:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,139 238 | ASSERT(allpositions.size() <= nSize); 2021-07-14T11:27:48,140 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:27:48,140 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:27:48,140 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:27:48,140 | ^~ 2021-07-14T11:27:48,140 Basics/ImageAtoms.cpp:241:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:27:48,140 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); 2021-07-14T11:27:48,141 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:27:48,141 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:27:48,141 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:27:48,141 | ^~ 2021-07-14T11:27:50,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImagePotential.cpp -o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o 2021-07-14T11:27:52,180 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::Vec]’: 2021-07-14T11:27:52,180 Basics/ImagePotential.cpp:93:38: required from here 2021-07-14T11:27:52,180 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:27:52,180 139 | for (int i = 0; i < orig_map.size(); i++) 2021-07-14T11:27:52,180 | ~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:27:52,188 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::SymTensor]’: 2021-07-14T11:27:52,188 Basics/ImagePotential.cpp:118:45: required from here 2021-07-14T11:27:52,188 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:27:53,678 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Langevin.cpp -o build/temp.linux-armv7l-3.9/Basics/Langevin.o 2021-07-14T11:27:56,249 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Matrix3x3.cpp -o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o 2021-07-14T11:27:57,361 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MolecularDynamics.cpp -o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o 2021-07-14T11:27:58,809 In file included from Basics/AsapPython.h:44, 2021-07-14T11:27:58,810 from Basics/MolecularDynamics.h:30, 2021-07-14T11:27:58,810 from Basics/MolecularDynamics.cpp:27: 2021-07-14T11:27:58,810 Basics/MolecularDynamics.cpp: In member function ‘bool AsapNS::MolecularDynamics::CallObservers(PyObject*)’: 2021-07-14T11:27:58,810 Basics/MolecularDynamics.cpp:238:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<_object*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:27:58,810 238 | ASSERT(n == obs_kwargs.size()); 2021-07-14T11:27:58,811 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:27:58,811 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:27:58,811 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:27:58,811 | ^~ 2021-07-14T11:28:00,153 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MonteCarloAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o 2021-07-14T11:28:02,812 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborCellLocator.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o 2021-07-14T11:28:04,504 Basics/NeighborCellLocator.cpp: In destructor ‘virtual AsapNS::NeighborCellLocator::~NeighborCellLocator()’: 2021-07-14T11:28:04,504 Basics/NeighborCellLocator.cpp:87:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:04,504 87 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T11:28:04,504 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:04,508 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:04,508 from Basics/NeighborCellLocator.h:35, 2021-07-14T11:28:04,509 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T11:28:04,509 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::MakeList()’: 2021-07-14T11:28:04,509 Basics/NeighborCellLocator.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,509 128 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T11:28:04,509 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:28:04,509 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:04,509 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:04,509 | ^~ 2021-07-14T11:28:04,521 Basics/NeighborCellLocator.cpp:313:42: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,521 313 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) 2021-07-14T11:28:04,521 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:28:04,522 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:04,522 from Basics/NeighborCellLocator.h:35, 2021-07-14T11:28:04,522 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T11:28:04,522 Basics/NeighborCellLocator.cpp:324:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,522 324 | ASSERT(cells.size() == nTotalCells[3]); 2021-07-14T11:28:04,523 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:28:04,523 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:04,523 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:04,523 | ^~ 2021-07-14T11:28:04,524 Basics/NeighborCellLocator.cpp:325:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:04,524 325 | for (int i = 0; i < cells.size(); i++) 2021-07-14T11:28:04,524 | ~~^~~~~~~~~~~~~~ 2021-07-14T11:28:04,526 Basics/NeighborCellLocator.cpp:361:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:04,526 361 | for (int i = 0; i < cells.size(); i++) 2021-07-14T11:28:04,527 | ~~^~~~~~~~~~~~~~ 2021-07-14T11:28:04,544 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::MakeNeighboringCellLists()’: 2021-07-14T11:28:04,544 Basics/NeighborCellLocator.cpp:476:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:04,544 476 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T11:28:04,544 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:04,545 Basics/NeighborCellLocator.cpp:479:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:04,545 479 | for (int i = 0; i < cells.size(); i++) 2021-07-14T11:28:04,545 | ~~^~~~~~~~~~~~~~ 2021-07-14T11:28:04,600 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:04,601 from Basics/NeighborCellLocator.h:35, 2021-07-14T11:28:04,601 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T11:28:04,601 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::ScaleAndNormalizePositions()’: 2021-07-14T11:28:04,601 Basics/NeighborCellLocator.cpp:933:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,601 933 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T11:28:04,601 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:28:04,601 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:04,601 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:04,601 | ^~ 2021-07-14T11:28:04,602 Basics/NeighborCellLocator.cpp:940:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,603 940 | if (wrappedPositions.capacity() < spsz) 2021-07-14T11:28:04,603 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:28:04,603 Basics/NeighborCellLocator.cpp:943:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,604 943 | if (offsetPositions.capacity() < spsz) 2021-07-14T11:28:04,604 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:28:04,606 Basics/NeighborCellLocator.cpp:980:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,606 980 | if (wrappedPositions.capacity() < spsz) 2021-07-14T11:28:04,607 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:28:04,607 Basics/NeighborCellLocator.cpp:983:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,607 983 | if (scaledOffsetPositions.capacity() < spsz) 2021-07-14T11:28:04,607 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:28:04,621 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:04,621 from Basics/NeighborCellLocator.h:35, 2021-07-14T11:28:04,621 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T11:28:04,621 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::RenormalizePositions()’: 2021-07-14T11:28:04,621 Basics/NeighborCellLocator.cpp:1105:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,622 1105 | ASSERT(referencePositions.size() == nAtoms); 2021-07-14T11:28:04,622 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:28:04,622 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:04,622 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:04,622 | ^~ 2021-07-14T11:28:04,623 Basics/NeighborCellLocator.cpp:1106:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,623 1106 | ASSERT(offsetPositions.size() == nAllAtoms); 2021-07-14T11:28:04,623 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:28:04,623 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:04,623 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:04,624 | ^~ 2021-07-14T11:28:04,627 Basics/NeighborCellLocator.cpp:1123:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,627 1123 | ASSERT(wrappedPositions.size() == nAllAtoms); 2021-07-14T11:28:04,628 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:28:04,628 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:04,628 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:04,628 | ^~ 2021-07-14T11:28:04,643 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::print_info(int)’: 2021-07-14T11:28:04,643 Basics/NeighborCellLocator.cpp:1254:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,643 1254 | if (referencePositions.size() > n) 2021-07-14T11:28:04,644 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:04,645 Basics/NeighborCellLocator.cpp:1256:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,645 1256 | if (wrappedPositions.size() > n) 2021-07-14T11:28:04,645 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:04,646 Basics/NeighborCellLocator.cpp:1258:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,646 1258 | if (scaledPositions.size() > n) 2021-07-14T11:28:04,647 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:04,647 Basics/NeighborCellLocator.cpp:1260:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,648 1260 | if (offsetPositions.size() > n) 2021-07-14T11:28:04,648 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:04,648 Basics/NeighborCellLocator.cpp:1262:36: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,649 1262 | if (scaledOffsetPositions.size() > n) 2021-07-14T11:28:04,649 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:04,655 Basics/NeighborCellLocator.cpp: In member function ‘virtual long int AsapNS::NeighborCellLocator::PrintMemory() const’: 2021-07-14T11:28:04,655 Basics/NeighborCellLocator.cpp:1294:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:04,655 1294 | if (i->size() > longest) 2021-07-14T11:28:04,655 | ~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:28:11,272 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList.o 2021-07-14T11:28:12,950 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::MakeList()’: 2021-07-14T11:28:12,951 Basics/NeighborList.cpp:126:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:12,951 126 | if (nAllAtoms != nbList.size()) 2021-07-14T11:28:12,951 | ~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:28:12,951 Basics/NeighborList.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:12,952 128 | if (fulllists && (nAllAtoms != complNbList.size())) 2021-07-14T11:28:12,952 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:12,970 Basics/NeighborList.cpp:200:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:12,970 200 | if (nbList[i].capacity() < reservedLength) 2021-07-14T11:28:12,971 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:28:12,971 Basics/NeighborList.cpp:210:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:12,971 210 | if (complNbList[i].capacity() < reservedLength) 2021-07-14T11:28:12,971 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:28:12,977 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T11:28:12,978 Basics/NeighborList.cpp:357:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:12,978 357 | if (size < nbList[a1].size()) 2021-07-14T11:28:12,978 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:12,987 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetFullNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T11:28:12,987 Basics/NeighborList.cpp:477:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:12,987 477 | if (size < nbList[a1].size() + complNbList[a1].size()) 2021-07-14T11:28:12,987 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:13,024 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::RemakeLists(const std::set&, std::set&)’: 2021-07-14T11:28:13,024 Basics/NeighborList.cpp:624:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T11:28:13,024 624 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != complNbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T11:28:13,027 Basics/NeighborList.cpp:654:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T11:28:13,027 654 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != nbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T11:28:13,042 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::CheckFullListConsistency(std::string, bool)’: 2021-07-14T11:28:13,043 Basics/NeighborList.cpp:756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:28:13,043 756 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T11:28:13,043 Basics/NeighborList.cpp:758:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:28:13,043 758 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T11:28:13,055 Basics/NeighborList.cpp:795:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:28:13,055 795 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T11:28:13,055 Basics/NeighborList.cpp:797:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:28:13,056 797 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T11:28:13,066 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::print_info(int)’: 2021-07-14T11:28:13,066 Basics/NeighborList.cpp:834:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:13,066 834 | for (int i = 0; i < nbList[n].size(); i++) 2021-07-14T11:28:13,066 | ~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:13,068 Basics/NeighborList.cpp:840:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:13,068 840 | for (int i = 0; i < complNbList[n].size(); i++) 2021-07-14T11:28:13,068 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:13,079 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::update_translationvectors()’: 2021-07-14T11:28:13,079 Basics/NeighborList.cpp:910:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:13,079 910 | for (int i = 0; i < translationTable.size(); i++) 2021-07-14T11:28:13,079 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:14,653 In file included from /usr/include/c++/10/vector:72, 2021-07-14T11:28:14,654 from Basics/AtomsBasis.h:33, 2021-07-14T11:28:14,654 from Basics/Atoms.h:36, 2021-07-14T11:28:14,654 from Basics/NeighborLocator.h:41, 2021-07-14T11:28:14,654 from Basics/NeighborList.h:37, 2021-07-14T11:28:14,654 from Basics/NeighborList.cpp:29: 2021-07-14T11:28:14,654 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T11:28:14,654 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:28:14,654 721 | vector<_Tp, _Alloc>:: 2021-07-14T11:28:14,655 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:14,655 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:14,655 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:14,746 In file included from /usr/include/c++/10/vector:67, 2021-07-14T11:28:14,746 from Basics/AtomsBasis.h:33, 2021-07-14T11:28:14,746 from Basics/Atoms.h:36, 2021-07-14T11:28:14,746 from Basics/NeighborLocator.h:41, 2021-07-14T11:28:14,746 from Basics/NeighborList.h:37, 2021-07-14T11:28:14,746 from Basics/NeighborList.cpp:29: 2021-07-14T11:28:14,746 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T11:28:14,747 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:28:14,747 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:28:14,747 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:14,747 1666 | std::__iterator_category(__first)); 2021-07-14T11:28:14,747 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:14,747 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:14,761 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T11:28:14,761 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:28:14,762 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:28:14,762 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:14,762 1666 | std::__iterator_category(__first)); 2021-07-14T11:28:14,762 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:14,762 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:17,630 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList2013.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o 2021-07-14T11:28:19,301 Basics/NeighborList2013.cpp: In member function ‘virtual int AsapNS::NeighborList2013::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T11:28:19,301 Basics/NeighborList2013.cpp:33:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:19,301 33 | if (size < nbList[a1].size()) 2021-07-14T11:28:19,301 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:19,943 In file included from /usr/include/c++/10/vector:72, 2021-07-14T11:28:19,944 from Basics/AtomsBasis.h:33, 2021-07-14T11:28:19,944 from Basics/Atoms.h:36, 2021-07-14T11:28:19,944 from Basics/NeighborLocator.h:41, 2021-07-14T11:28:19,944 from Basics/NeighborList.h:37, 2021-07-14T11:28:19,944 from Basics/NeighborList2013.h:11, 2021-07-14T11:28:19,944 from Basics/NeighborList2013.cpp:8: 2021-07-14T11:28:19,944 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T11:28:19,944 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:28:19,945 721 | vector<_Tp, _Alloc>:: 2021-07-14T11:28:19,945 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:19,945 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:19,945 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:20,038 In file included from /usr/include/c++/10/vector:67, 2021-07-14T11:28:20,038 from Basics/AtomsBasis.h:33, 2021-07-14T11:28:20,039 from Basics/Atoms.h:36, 2021-07-14T11:28:20,039 from Basics/NeighborLocator.h:41, 2021-07-14T11:28:20,039 from Basics/NeighborList.h:37, 2021-07-14T11:28:20,039 from Basics/NeighborList2013.h:11, 2021-07-14T11:28:20,039 from Basics/NeighborList2013.cpp:8: 2021-07-14T11:28:20,039 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T11:28:20,039 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:28:20,039 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:28:20,039 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:20,040 1666 | std::__iterator_category(__first)); 2021-07-14T11:28:20,040 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:20,040 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:20,057 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T11:28:20,057 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:28:20,057 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:28:20,057 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:20,057 1666 | std::__iterator_category(__first)); 2021-07-14T11:28:20,057 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:20,058 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:20,583 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NormalAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o 2021-07-14T11:28:22,097 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_numbers(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T11:28:22,097 Basics/NormalAtoms.cpp:426:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:22,098 426 | if (numbers.size() != nAtoms+nGhosts) 2021-07-14T11:28:22,098 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:28:22,101 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_positions(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T11:28:22,101 Basics/NormalAtoms.cpp:471:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:22,101 471 | bool pos_resized = (positions.size() != nAtoms+nGhosts); 2021-07-14T11:28:22,101 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:28:22,105 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:22,105 from Basics/NormalAtoms.cpp:27: 2021-07-14T11:28:22,105 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T11:28:22,105 Basics/NormalAtoms.cpp:529:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:22,105 529 | ASSERT(positions.size() == nAtoms + nGhosts); 2021-07-14T11:28:22,106 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:22,106 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:22,106 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:22,106 | ^~ 2021-07-14T11:28:22,106 Basics/NormalAtoms.cpp:530:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:22,106 530 | if (pos.capacity() < nAtoms + nGhosts) 2021-07-14T11:28:22,106 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:22,110 Basics/NormalAtoms.cpp:536:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T11:28:22,110 536 | if (pos.capacity() < nAtoms) 2021-07-14T11:28:22,111 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:28:22,111 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:22,111 from Basics/NormalAtoms.cpp:27: 2021-07-14T11:28:22,111 Basics/NormalAtoms.cpp:539:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T11:28:22,111 539 | ASSERT(pos.size() == nAtoms); 2021-07-14T11:28:22,112 | ~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:28:22,112 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:22,112 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:22,112 | ^~ 2021-07-14T11:28:22,112 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T11:28:22,112 Basics/NormalAtoms.cpp:551:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:22,113 551 | ASSERT(positions.size() >= n); 2021-07-14T11:28:22,113 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T11:28:22,113 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:22,113 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:22,113 | ^~ 2021-07-14T11:28:22,113 Basics/NormalAtoms.cpp:553:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:22,114 553 | if (pos.capacity() < n) 2021-07-14T11:28:22,114 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:23,577 In file included from /usr/include/c++/10/vector:72, 2021-07-14T11:28:23,577 from Basics/AtomsBasis.h:33, 2021-07-14T11:28:23,578 from Basics/NormalAtoms.h:33, 2021-07-14T11:28:23,578 from Basics/NormalAtoms.cpp:29: 2021-07-14T11:28:23,578 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T11:28:23,578 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:28:23,578 721 | vector<_Tp, _Alloc>:: 2021-07-14T11:28:23,578 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:23,578 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:23,579 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:24,706 In file included from /usr/include/c++/10/vector:67, 2021-07-14T11:28:24,706 from Basics/AtomsBasis.h:33, 2021-07-14T11:28:24,706 from Basics/NormalAtoms.h:33, 2021-07-14T11:28:24,706 from Basics/NormalAtoms.cpp:29: 2021-07-14T11:28:24,706 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T11:28:24,706 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:28:24,707 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:28:24,707 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:24,707 1666 | std::__iterator_category(__first)); 2021-07-14T11:28:24,707 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:24,707 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:24,707 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:28:24,707 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:28:24,707 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:24,708 1666 | std::__iterator_category(__first)); 2021-07-14T11:28:24,708 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:24,708 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:28:25,843 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/RandomNumbers.cpp -o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o 2021-07-14T11:28:27,654 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Timing.cpp -o build/temp.linux-armv7l-3.9/Basics/Timing.o 2021-07-14T11:28:29,290 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Vec.cpp -o build/temp.linux-armv7l-3.9/Basics/Vec.o 2021-07-14T11:28:30,374 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/VelocityVerlet.cpp -o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o 2021-07-14T11:28:32,653 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/BrennerPotential.cpp -o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o 2021-07-14T11:28:35,829 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/bcuint.cpp -o build/temp.linux-armv7l-3.9/Brenner/bcuint.o 2021-07-14T11:28:38,276 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/caguts.cpp -o build/temp.linux-armv7l-3.9/Brenner/caguts.o 2021-07-14T11:28:41,118 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/expand.cpp -o build/temp.linux-armv7l-3.9/Brenner/expand.o 2021-07-14T11:28:42,330 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/inter2d_iv.cpp -o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o 2021-07-14T11:28:42,437 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/mtable.cpp -o build/temp.linux-armv7l-3.9/Brenner/mtable.o 2021-07-14T11:28:44,898 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/pibond.cpp -o build/temp.linux-armv7l-3.9/Brenner/pibond.o 2021-07-14T11:28:49,289 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radic.cpp -o build/temp.linux-armv7l-3.9/Brenner/radic.o 2021-07-14T11:28:51,688 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radicdata.cpp -o build/temp.linux-armv7l-3.9/Brenner/radicdata.o 2021-07-14T11:28:52,152 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/sili_germ.cpp -o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o 2021-07-14T11:28:54,714 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/spgch.cpp -o build/temp.linux-armv7l-3.9/Brenner/spgch.o 2021-07-14T11:28:56,689 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/AsapSerial.cpp -o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o 2021-07-14T11:28:58,508 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/DynamicsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o 2021-07-14T11:29:00,020 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:00,020 from Interface/DynamicsInterface.h:29, 2021-07-14T11:29:00,021 from Interface/DynamicsInterface.cpp:26: 2021-07-14T11:29:00,021 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:29:00,021 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:00,021 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:29:00,021 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:00,021 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:00,022 | ^~ 2021-07-14T11:29:00,022 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:29:00,022 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:00,022 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:29:00,023 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:00,023 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:00,023 | ^~ 2021-07-14T11:29:00,030 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:29:00,031 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:00,031 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:29:00,031 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:00,031 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:00,031 | ^~ 2021-07-14T11:29:00,032 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:29:00,032 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:00,032 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:29:00,033 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:00,033 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:00,033 | ^~ 2021-07-14T11:29:00,043 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:29:00,043 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:00,043 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:29:00,043 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:00,043 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:00,044 | ^~ 2021-07-14T11:29:00,048 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_VelocityVerletInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:00,049 Interface/DynamicsInterface.cpp:78:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,049 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T11:29:00,049 | ^~~~~~~ 2021-07-14T11:29:00,049 Interface/DynamicsInterface.cpp:78:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,049 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T11:29:00,049 | ^~~~~~ 2021-07-14T11:29:00,050 Interface/DynamicsInterface.cpp:78:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,050 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T11:29:00,050 | ^~~~~~~~~~ 2021-07-14T11:29:00,050 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_LangevinInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:00,051 Interface/DynamicsInterface.cpp:116:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,051 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:29:00,051 | ^~~~~~~ 2021-07-14T11:29:00,051 Interface/DynamicsInterface.cpp:116:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,051 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:29:00,051 | ^~~~~~ 2021-07-14T11:29:00,052 Interface/DynamicsInterface.cpp:116:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,052 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:29:00,052 | ^~~~~~~~~~ 2021-07-14T11:29:00,052 Interface/DynamicsInterface.cpp:116:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,052 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:29:00,052 | ^~~~~~~ 2021-07-14T11:29:00,052 Interface/DynamicsInterface.cpp:116:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,053 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:29:00,053 | ^~~~~~~ 2021-07-14T11:29:00,053 Interface/DynamicsInterface.cpp:116:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,053 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:29:00,053 | ^~~~ 2021-07-14T11:29:00,053 Interface/DynamicsInterface.cpp:116:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,054 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:29:00,054 | ^~~~ 2021-07-14T11:29:00,054 Interface/DynamicsInterface.cpp:116:87: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,054 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:29:00,054 | ^~~~~~~ 2021-07-14T11:29:00,054 Interface/DynamicsInterface.cpp:116:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,054 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:29:00,055 | ^~~~~~ 2021-07-14T11:29:00,055 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DynamicsRun(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:00,055 Interface/DynamicsInterface.cpp:162:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,055 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T11:29:00,055 | ^~~~~~~ 2021-07-14T11:29:00,055 Interface/DynamicsInterface.cpp:162:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,055 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T11:29:00,056 | ^~~~~~~~~~~ 2021-07-14T11:29:00,056 Interface/DynamicsInterface.cpp:162:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,056 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T11:29:00,056 | ^~~~~ 2021-07-14T11:29:00,056 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetScalarConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:00,056 Interface/DynamicsInterface.cpp:190:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,056 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,057 | ^~~~~~ 2021-07-14T11:29:00,057 Interface/DynamicsInterface.cpp:190:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,057 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,057 | ^~~~ 2021-07-14T11:29:00,057 Interface/DynamicsInterface.cpp:190:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,057 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,057 | ^~~~ 2021-07-14T11:29:00,058 Interface/DynamicsInterface.cpp:190:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,058 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,058 | ^~~~~~~ 2021-07-14T11:29:00,058 Interface/DynamicsInterface.cpp:190:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,058 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,058 | ^~~~~~ 2021-07-14T11:29:00,058 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetVectorConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:00,059 Interface/DynamicsInterface.cpp:214:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,059 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,059 | ^~~~~~ 2021-07-14T11:29:00,059 Interface/DynamicsInterface.cpp:214:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,059 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,059 | ^~~~ 2021-07-14T11:29:00,060 Interface/DynamicsInterface.cpp:214:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,060 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,060 | ^~~~ 2021-07-14T11:29:00,060 Interface/DynamicsInterface.cpp:214:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,060 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,060 | ^~~~~~~ 2021-07-14T11:29:00,060 Interface/DynamicsInterface.cpp:214:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,060 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:29:00,061 | ^~~~~~ 2021-07-14T11:29:00,061 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvGetRandom(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:00,061 Interface/DynamicsInterface.cpp:251:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:00,061 251 | static char *kwlist[] = {"gaussian", NULL}; 2021-07-14T11:29:00,061 | ^~~~~~~~~~ 2021-07-14T11:29:00,772 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o 2021-07-14T11:29:02,294 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:02,294 from Interface/EMTParameterProviderInterface.cpp:28: 2021-07-14T11:29:02,294 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:29:02,294 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:02,294 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:29:02,294 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:02,294 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:02,295 | ^~ 2021-07-14T11:29:02,305 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:29:02,306 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:02,306 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:29:02,306 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:02,306 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:02,306 | ^~ 2021-07-14T11:29:02,315 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:29:02,315 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:02,315 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:29:02,316 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:02,316 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:02,316 | ^~ 2021-07-14T11:29:02,327 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:29:02,327 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:02,327 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:29:02,327 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:02,327 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:02,328 | ^~ 2021-07-14T11:29:02,338 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:29:02,338 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:02,339 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:29:02,339 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:02,339 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:02,339 | ^~ 2021-07-14T11:29:02,742 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ExceptionInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o 2021-07-14T11:29:04,263 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/NeighborLocatorInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o 2021-07-14T11:29:05,771 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:05,771 from Interface/NeighborLocatorInterface.cpp:27: 2021-07-14T11:29:05,771 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:29:05,771 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:05,771 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:29:05,772 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:05,772 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:05,772 | ^~ 2021-07-14T11:29:05,781 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:29:05,781 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:05,782 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:29:05,782 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:05,782 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:05,782 | ^~ 2021-07-14T11:29:05,790 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:29:05,790 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:05,790 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:29:05,791 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:05,791 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:05,791 | ^~ 2021-07-14T11:29:05,801 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:29:05,801 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:05,801 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:29:05,801 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:05,801 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:05,802 | ^~ 2021-07-14T11:29:05,811 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:29:05,811 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:05,812 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:29:05,812 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:05,812 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:05,812 | ^~ 2021-07-14T11:29:06,010 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborList_Py(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:06,011 Interface/NeighborLocatorInterface.cpp:166:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:06,011 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T11:29:06,011 | ^~~~~~ 2021-07-14T11:29:06,011 Interface/NeighborLocatorInterface.cpp:166:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:06,011 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T11:29:06,011 | ^~~~~~~ 2021-07-14T11:29:06,012 Interface/NeighborLocatorInterface.cpp:166:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:06,012 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T11:29:06,012 | ^~~~~~~~~~~~~ 2021-07-14T11:29:06,012 Interface/NeighborLocatorInterface.cpp:166:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:06,012 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T11:29:06,012 | ^~~~~~ 2021-07-14T11:29:06,013 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborCellLocator_Serial(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:06,013 Interface/NeighborLocatorInterface.cpp:218:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:06,014 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:29:06,014 | ^~~~~~ 2021-07-14T11:29:06,014 Interface/NeighborLocatorInterface.cpp:218:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:06,014 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:29:06,014 | ^~~~~~~ 2021-07-14T11:29:06,014 Interface/NeighborLocatorInterface.cpp:218:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:06,015 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:29:06,015 | ^~~~~~~~~~~~~ 2021-07-14T11:29:06,048 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNB(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:06,048 Interface/NeighborLocatorInterface.cpp:395:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:06,048 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T11:29:06,048 | ^~~ 2021-07-14T11:29:06,049 Interface/NeighborLocatorInterface.cpp:395:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:06,049 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T11:29:06,049 | ^~~~~~ 2021-07-14T11:29:08,042 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/OpenMPInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o 2021-07-14T11:29:09,301 Interface/OpenMPInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_set_num_threads(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:09,301 Interface/OpenMPInterface.cpp:82:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:09,302 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T11:29:09,302 | ^~~ 2021-07-14T11:29:09,302 Interface/OpenMPInterface.cpp:82:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:09,302 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T11:29:09,302 | ^~~~~~~~~~~~ 2021-07-14T11:29:09,544 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PTMInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o 2021-07-14T11:29:11,166 Interface/PTMInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_PTMall(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:11,167 Interface/PTMInterface.cpp:99:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:11,167 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T11:29:11,167 | ^~~~~~~ 2021-07-14T11:29:11,167 Interface/PTMInterface.cpp:99:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:11,167 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T11:29:11,168 | ^~~~~~~~ 2021-07-14T11:29:11,168 Interface/PTMInterface.cpp:99:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:11,168 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T11:29:11,168 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:11,168 Interface/PTMInterface.cpp:100:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:11,168 100 | "calculate_strains", "quick", 2021-07-14T11:29:11,169 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:11,169 Interface/PTMInterface.cpp:100:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:11,169 100 | "calculate_strains", "quick", 2021-07-14T11:29:11,169 | ^~~~~~~ 2021-07-14T11:29:11,169 Interface/PTMInterface.cpp:101:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:11,169 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T11:29:11,169 | ^~~~~~~~~~~~~~~ 2021-07-14T11:29:11,170 Interface/PTMInterface.cpp:101:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:11,170 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T11:29:11,170 | ^~~~~~~~~~~~~~~~~ 2021-07-14T11:29:11,193 In file included from /usr/include/python3.9/Python.h:61, 2021-07-14T11:29:11,193 from Basics/AsapPython.h:38, 2021-07-14T11:29:11,193 from Interface/PTMInterface.h:30, 2021-07-14T11:29:11,193 from Interface/PTMInterface.cpp:1: 2021-07-14T11:29:11,193 Interface/PTMInterface.cpp:303:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:11,194 303 | assert(m < indices.size()); 2021-07-14T11:29:11,194 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T11:29:11,194 Interface/PTMInterface.cpp:305:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:11,194 305 | assert(idx >= 0 && idx < indices.size()); 2021-07-14T11:29:11,194 | ~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:29:11,418 Interface/PTMInterface.cpp: At global scope: 2021-07-14T11:29:11,418 Interface/PTMInterface.cpp:11:18: warning: ‘PyObject* error(PyObject*, char*)’ defined but not used [-Wunused-function] 2021-07-14T11:29:11,419 11 | static PyObject* error(PyObject* type, char* msg) 2021-07-14T11:29:11,419 | ^~~~~ 2021-07-14T11:29:12,995 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PotentialInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o 2021-07-14T11:29:14,486 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:14,486 from Interface/PotentialInterface.cpp:29: 2021-07-14T11:29:14,486 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:29:14,486 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:14,487 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:29:14,487 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:14,487 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:14,487 | ^~ 2021-07-14T11:29:14,496 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:29:14,497 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:14,497 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:29:14,497 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:14,497 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:14,497 | ^~ 2021-07-14T11:29:14,505 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:29:14,505 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:14,506 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:29:14,506 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:14,506 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:14,506 | ^~ 2021-07-14T11:29:14,516 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:29:14,516 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:14,517 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:29:14,517 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:14,517 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:14,517 | ^~ 2021-07-14T11:29:14,527 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:29:14,527 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:14,527 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:29:14,527 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:14,528 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:14,528 | ^~ 2021-07-14T11:29:14,786 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,786 Interface/PotentialInterface.cpp:201:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,786 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T11:29:14,786 | ^~~~~~ 2021-07-14T11:29:14,786 Interface/PotentialInterface.cpp:201:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,787 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T11:29:14,787 | ^~~~~~~~~ 2021-07-14T11:29:14,788 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMT2013Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,788 Interface/PotentialInterface.cpp:234:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,788 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T11:29:14,789 | ^~~~~~~~~~~~ 2021-07-14T11:29:14,789 Interface/PotentialInterface.cpp:234:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,789 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T11:29:14,789 | ^~~~~~~~~~~~~~~~~ 2021-07-14T11:29:14,789 Interface/PotentialInterface.cpp:234:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,789 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T11:29:14,789 | ^~~~~~~~~ 2021-07-14T11:29:14,790 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MonteCarloEMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,790 Interface/PotentialInterface.cpp:270:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,791 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T11:29:14,791 | ^~~~~~ 2021-07-14T11:29:14,791 Interface/PotentialInterface.cpp:270:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,791 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T11:29:14,791 | ^~~~~~~~~ 2021-07-14T11:29:14,792 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RGLInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,792 Interface/PotentialInterface.cpp:291:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,792 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:29:14,792 | ^~~~~~~~~~ 2021-07-14T11:29:14,792 Interface/PotentialInterface.cpp:291:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,793 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:29:14,793 | ^~~ 2021-07-14T11:29:14,793 Interface/PotentialInterface.cpp:291:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,793 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:29:14,793 | ^~~ 2021-07-14T11:29:14,793 Interface/PotentialInterface.cpp:291:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,793 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:29:14,794 | ^~~ 2021-07-14T11:29:14,794 Interface/PotentialInterface.cpp:291:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,794 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:29:14,794 | ^~~~~~ 2021-07-14T11:29:14,794 Interface/PotentialInterface.cpp:291:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,794 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:29:14,794 | ^~~~ 2021-07-14T11:29:14,795 Interface/PotentialInterface.cpp:292:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,795 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:29:14,795 | ^~~~ 2021-07-14T11:29:14,795 Interface/PotentialInterface.cpp:292:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,795 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:29:14,795 | ^~~~ 2021-07-14T11:29:14,795 Interface/PotentialInterface.cpp:292:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,796 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:29:14,796 | ^~~~ 2021-07-14T11:29:14,796 Interface/PotentialInterface.cpp:292:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,796 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:29:14,796 | ^~~~ 2021-07-14T11:29:14,796 Interface/PotentialInterface.cpp:292:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,796 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:29:14,797 | ^~~~ 2021-07-14T11:29:14,797 Interface/PotentialInterface.cpp:292:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,797 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:29:14,797 | ^~~~ 2021-07-14T11:29:14,797 Interface/PotentialInterface.cpp:293:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,797 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T11:29:14,797 | ^~~~~ 2021-07-14T11:29:14,798 Interface/PotentialInterface.cpp:293:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,798 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T11:29:14,798 | ^~~~~ 2021-07-14T11:29:14,798 Interface/PotentialInterface.cpp:293:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,798 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T11:29:14,798 | ^~~~~~~~~ 2021-07-14T11:29:14,800 Interface/PotentialInterface.cpp: In function ‘int PyAsap_LennardJonesInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,800 Interface/PotentialInterface.cpp:355:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,800 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T11:29:14,800 | ^~~~~~~~~~~~~ 2021-07-14T11:29:14,801 Interface/PotentialInterface.cpp:355:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,801 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T11:29:14,801 | ^~~~~~~~~~ 2021-07-14T11:29:14,801 Interface/PotentialInterface.cpp:355:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,801 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T11:29:14,801 | ^~~~~~~~~ 2021-07-14T11:29:14,802 Interface/PotentialInterface.cpp:355:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,802 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T11:29:14,802 | ^~~~~~~ 2021-07-14T11:29:14,802 Interface/PotentialInterface.cpp:356:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,802 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T11:29:14,802 | ^~~~~~~~ 2021-07-14T11:29:14,802 Interface/PotentialInterface.cpp:356:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,803 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T11:29:14,803 | ^~~~~~ 2021-07-14T11:29:14,803 Interface/PotentialInterface.cpp:356:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,803 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T11:29:14,803 | ^~~~~~~~~~ 2021-07-14T11:29:14,803 Interface/PotentialInterface.cpp:356:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,803 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T11:29:14,804 | ^~~~~~~~~ 2021-07-14T11:29:14,806 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RahmanStillingerLembergInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,806 Interface/PotentialInterface.cpp:394:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,806 394 | static char *kwlist[] = {"numElements", 2021-07-14T11:29:14,807 | ^~~~~~~~~~~~~ 2021-07-14T11:29:14,807 Interface/PotentialInterface.cpp:395:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,807 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:29:14,807 | ^~~~ 2021-07-14T11:29:14,807 Interface/PotentialInterface.cpp:395:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,807 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:29:14,807 | ^~~~ 2021-07-14T11:29:14,808 Interface/PotentialInterface.cpp:395:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,808 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:29:14,808 | ^~~ 2021-07-14T11:29:14,808 Interface/PotentialInterface.cpp:395:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,808 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:29:14,808 | ^~~~ 2021-07-14T11:29:14,808 Interface/PotentialInterface.cpp:395:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,809 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:29:14,809 | ^~~~ 2021-07-14T11:29:14,809 Interface/PotentialInterface.cpp:395:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,809 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:29:14,809 | ^~~~ 2021-07-14T11:29:14,809 Interface/PotentialInterface.cpp:396:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,809 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:29:14,809 | ^~~~ 2021-07-14T11:29:14,810 Interface/PotentialInterface.cpp:396:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,810 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:29:14,810 | ^~~~ 2021-07-14T11:29:14,810 Interface/PotentialInterface.cpp:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,810 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:29:14,810 | ^~~~ 2021-07-14T11:29:14,810 Interface/PotentialInterface.cpp:396:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,810 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:29:14,810 | ^~~~ 2021-07-14T11:29:14,811 Interface/PotentialInterface.cpp:396:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,811 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:29:14,811 | ^~~~ 2021-07-14T11:29:14,811 Interface/PotentialInterface.cpp:396:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,811 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:29:14,811 | ^~~~ 2021-07-14T11:29:14,811 Interface/PotentialInterface.cpp:397:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,811 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T11:29:14,812 | ^~~~~~~~~~ 2021-07-14T11:29:14,812 Interface/PotentialInterface.cpp:397:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,812 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T11:29:14,812 | ^~~~~~~~ 2021-07-14T11:29:14,812 Interface/PotentialInterface.cpp:397:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,812 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T11:29:14,812 | ^~~~~~ 2021-07-14T11:29:14,813 Interface/PotentialInterface.cpp:397:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,813 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T11:29:14,813 | ^~~~~~~~~ 2021-07-14T11:29:14,813 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterfaceInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,813 Interface/PotentialInterface.cpp:500:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,813 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,813 | ^~~ 2021-07-14T11:29:14,814 Interface/PotentialInterface.cpp:500:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,814 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,814 | ^~~ 2021-07-14T11:29:14,814 Interface/PotentialInterface.cpp:500:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,814 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,814 | ^~~ 2021-07-14T11:29:14,814 Interface/PotentialInterface.cpp:500:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,814 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,815 | ^~~~ 2021-07-14T11:29:14,815 Interface/PotentialInterface.cpp:500:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,815 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,815 | ^~~~ 2021-07-14T11:29:14,815 Interface/PotentialInterface.cpp:500:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,815 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,815 | ^~~~~~~~~ 2021-07-14T11:29:14,815 Interface/PotentialInterface.cpp:501:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,815 501 | "q", "kappa", 2021-07-14T11:29:14,816 | ^~~ 2021-07-14T11:29:14,816 Interface/PotentialInterface.cpp:501:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,816 501 | "q", "kappa", 2021-07-14T11:29:14,816 | ^~~~~~~ 2021-07-14T11:29:14,816 Interface/PotentialInterface.cpp:502:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,816 502 | "D", "alpha", "R0", 2021-07-14T11:29:14,816 | ^~~ 2021-07-14T11:29:14,816 Interface/PotentialInterface.cpp:502:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,817 502 | "D", "alpha", "R0", 2021-07-14T11:29:14,817 | ^~~~~~~ 2021-07-14T11:29:14,817 Interface/PotentialInterface.cpp:502:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,817 502 | "D", "alpha", "R0", 2021-07-14T11:29:14,817 | ^~~~ 2021-07-14T11:29:14,817 Interface/PotentialInterface.cpp:503:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,817 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:29:14,817 | ^~~ 2021-07-14T11:29:14,818 Interface/PotentialInterface.cpp:503:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,818 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:29:14,818 | ^~~ 2021-07-14T11:29:14,818 Interface/PotentialInterface.cpp:503:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,818 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:29:14,818 | ^~~~ 2021-07-14T11:29:14,818 Interface/PotentialInterface.cpp:503:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,819 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:29:14,819 | ^~~~~~~~~~~ 2021-07-14T11:29:14,819 Interface/PotentialInterface.cpp:504:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,819 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T11:29:14,819 | ^~~~~~ 2021-07-14T11:29:14,819 Interface/PotentialInterface.cpp:504:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,819 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T11:29:14,819 | ^~~~~~~ 2021-07-14T11:29:14,819 Interface/PotentialInterface.cpp:504:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,820 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T11:29:14,820 | ^~~~~~~~~~~~~~~ 2021-07-14T11:29:14,820 Interface/PotentialInterface.cpp:504:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,820 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T11:29:14,820 | ^~~~~~~~~ 2021-07-14T11:29:14,820 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterface2Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,820 Interface/PotentialInterface.cpp:565:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,821 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,821 | ^~~ 2021-07-14T11:29:14,821 Interface/PotentialInterface.cpp:565:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,821 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,821 | ^~~ 2021-07-14T11:29:14,821 Interface/PotentialInterface.cpp:565:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,821 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,822 | ^~~ 2021-07-14T11:29:14,822 Interface/PotentialInterface.cpp:565:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,822 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,822 | ^~~~ 2021-07-14T11:29:14,822 Interface/PotentialInterface.cpp:565:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,822 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,822 | ^~~~ 2021-07-14T11:29:14,822 Interface/PotentialInterface.cpp:565:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,823 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:29:14,823 | ^~~~~~~~~ 2021-07-14T11:29:14,823 Interface/PotentialInterface.cpp:566:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,823 566 | "q", "kappa", 2021-07-14T11:29:14,823 | ^~~ 2021-07-14T11:29:14,824 Interface/PotentialInterface.cpp:566:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,824 566 | "q", "kappa", 2021-07-14T11:29:14,824 | ^~~~~~~ 2021-07-14T11:29:14,824 Interface/PotentialInterface.cpp:567:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,824 567 | "D", "alpha", "R0", 2021-07-14T11:29:14,824 | ^~~ 2021-07-14T11:29:14,824 Interface/PotentialInterface.cpp:567:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,824 567 | "D", "alpha", "R0", 2021-07-14T11:29:14,825 | ^~~~~~~ 2021-07-14T11:29:14,825 Interface/PotentialInterface.cpp:567:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,825 567 | "D", "alpha", "R0", 2021-07-14T11:29:14,825 | ^~~~ 2021-07-14T11:29:14,825 Interface/PotentialInterface.cpp:568:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,825 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:29:14,826 | ^~~ 2021-07-14T11:29:14,826 Interface/PotentialInterface.cpp:568:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,826 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:29:14,826 | ^~~ 2021-07-14T11:29:14,826 Interface/PotentialInterface.cpp:568:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,826 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:29:14,826 | ^~~~ 2021-07-14T11:29:14,826 Interface/PotentialInterface.cpp:568:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,827 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:29:14,827 | ^~~~~~~~~~~ 2021-07-14T11:29:14,827 Interface/PotentialInterface.cpp:569:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,827 569 | "E", "rho0", "l0", 2021-07-14T11:29:14,827 | ^~~ 2021-07-14T11:29:14,827 Interface/PotentialInterface.cpp:569:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,827 569 | "E", "rho0", "l0", 2021-07-14T11:29:14,828 | ^~~~~~ 2021-07-14T11:29:14,828 Interface/PotentialInterface.cpp:569:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,828 569 | "E", "rho0", "l0", 2021-07-14T11:29:14,828 | ^~~~ 2021-07-14T11:29:14,828 Interface/PotentialInterface.cpp:570:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,828 570 | "B", "C", 2021-07-14T11:29:14,828 | ^~~ 2021-07-14T11:29:14,829 Interface/PotentialInterface.cpp:570:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,829 570 | "B", "C", 2021-07-14T11:29:14,829 | ^~~ 2021-07-14T11:29:14,829 Interface/PotentialInterface.cpp:571:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,829 571 | "interface_cut", "verbose", NULL}; 2021-07-14T11:29:14,829 | ^~~~~~~~~~~~~~~ 2021-07-14T11:29:14,829 Interface/PotentialInterface.cpp:571:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,829 571 | "interface_cut", "verbose", NULL}; 2021-07-14T11:29:14,830 | ^~~~~~~~~ 2021-07-14T11:29:14,830 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MorseInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,830 Interface/PotentialInterface.cpp:647:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,830 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T11:29:14,830 | ^~~~~~~~~~ 2021-07-14T11:29:14,830 Interface/PotentialInterface.cpp:647:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,830 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T11:29:14,831 | ^~~~~~~~~ 2021-07-14T11:29:14,831 Interface/PotentialInterface.cpp:647:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,831 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T11:29:14,831 | ^~~~~~~ 2021-07-14T11:29:14,831 Interface/PotentialInterface.cpp:647:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,831 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T11:29:14,832 | ^~~~~~ 2021-07-14T11:29:14,832 Interface/PotentialInterface.cpp:648:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,832 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T11:29:14,832 | ^~~~~~ 2021-07-14T11:29:14,832 Interface/PotentialInterface.cpp:648:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,832 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T11:29:14,832 | ^~~~~~~~~~ 2021-07-14T11:29:14,833 Interface/PotentialInterface.cpp:648:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,833 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T11:29:14,833 | ^~~~~~~~~ 2021-07-14T11:29:14,833 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetPotentialEnergy(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:14,833 Interface/PotentialInterface.cpp:711:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,833 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T11:29:14,833 | ^~~~~~~ 2021-07-14T11:29:14,834 Interface/PotentialInterface.cpp:711:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:14,834 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T11:29:14,834 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:14,840 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetExtra(AsapNS::PyAsap_PotentialObject*, PyObject*)’: 2021-07-14T11:29:14,840 Interface/PotentialInterface.cpp:863:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:14,840 863 | for (int i = 0; i < s1.size(); i++) 2021-07-14T11:29:14,840 | ~~^~~~~~~~~~~ 2021-07-14T11:29:17,507 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PythonConversions.cpp -o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o 2021-07-14T11:29:18,968 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:18,969 from Interface/PythonConversions.h:30, 2021-07-14T11:29:18,969 from Interface/PythonConversions.cpp:24: 2021-07-14T11:29:18,969 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:29:18,969 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:18,969 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:29:18,969 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:18,970 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:18,970 | ^~ 2021-07-14T11:29:18,979 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:29:18,979 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:18,979 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:29:18,980 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:18,980 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:18,980 | ^~ 2021-07-14T11:29:18,988 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:29:18,988 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:18,988 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:29:18,988 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:18,988 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:18,989 | ^~ 2021-07-14T11:29:18,999 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:29:18,999 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:18,999 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:29:18,999 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:18,999 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:18,999 | ^~ 2021-07-14T11:29:19,009 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:29:19,009 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:19,009 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:29:19,010 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:19,010 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:19,010 | ^~ 2021-07-14T11:29:19,875 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/RDFInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o 2021-07-14T11:29:21,429 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:21,429 from Interface/RDFInterface.h:30, 2021-07-14T11:29:21,429 from Interface/RDFInterface.cpp:27: 2021-07-14T11:29:21,430 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:29:21,430 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:21,430 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:29:21,430 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:21,430 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:21,430 | ^~ 2021-07-14T11:29:21,440 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:29:21,440 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:21,440 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:29:21,440 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:21,440 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:21,440 | ^~ 2021-07-14T11:29:21,448 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:29:21,448 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:21,448 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:29:21,448 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:21,449 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:21,449 | ^~ 2021-07-14T11:29:21,459 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:29:21,459 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:21,459 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:29:21,459 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:21,460 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:21,460 | ^~ 2021-07-14T11:29:21,469 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:29:21,470 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:21,470 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:29:21,470 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:21,470 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:21,470 | ^~ 2021-07-14T11:29:23,408 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ToolsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o 2021-07-14T11:29:24,881 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:24,881 from Interface/ToolsInterface.cpp:27: 2021-07-14T11:29:24,882 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:29:24,882 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:24,882 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:29:24,882 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:24,882 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:24,882 | ^~ 2021-07-14T11:29:24,893 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:29:24,893 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:24,893 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:29:24,893 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:24,893 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:24,894 | ^~ 2021-07-14T11:29:24,902 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:29:24,903 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:24,903 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:29:24,903 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:24,903 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:24,903 | ^~ 2021-07-14T11:29:24,915 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:29:24,915 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:24,916 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:29:24,916 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:24,916 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:24,916 | ^~ 2021-07-14T11:29:24,928 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:29:24,928 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:29:24,928 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:29:24,928 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:24,928 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:24,928 | ^~ 2021-07-14T11:29:25,125 Interface/ToolsInterface.cpp: In function ‘int AsapNS::PyAsap_FullCNAInit(AsapNS::PyAsap_FullCNAObject*, PyObject*, PyObject*)’: 2021-07-14T11:29:25,125 Interface/ToolsInterface.cpp:92:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:25,126 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T11:29:25,126 | ^~~~~~~ 2021-07-14T11:29:25,126 Interface/ToolsInterface.cpp:92:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:29:25,126 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T11:29:25,126 | ^~~~~~~~ 2021-07-14T11:29:25,852 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/alloy_types.cpp -o build/temp.linux-armv7l-3.9/PTM/alloy_types.o 2021-07-14T11:29:27,477 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/canonical.cpp -o build/temp.linux-armv7l-3.9/PTM/canonical.o 2021-07-14T11:29:29,324 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/convex_hull_incremental.cpp -o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o 2021-07-14T11:29:31,322 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/deformation_gradient.cpp -o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o 2021-07-14T11:29:32,861 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/graph_data.cpp -o build/temp.linux-armv7l-3.9/PTM/graph_data.o 2021-07-14T11:29:34,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/index_ptm.cpp -o build/temp.linux-armv7l-3.9/PTM/index_ptm.o 2021-07-14T11:29:36,580 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/initialize_data.cpp -o build/temp.linux-armv7l-3.9/PTM/initialize_data.o 2021-07-14T11:29:38,317 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/neighbour_ordering.cpp -o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o 2021-07-14T11:29:39,735 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/normalize_vertices.cpp -o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o 2021-07-14T11:29:40,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/polar.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o 2021-07-14T11:29:40,944 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/quat.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o 2021-07-14T11:29:41,476 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/voronoi/cell.cpp -o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o 2021-07-14T11:29:44,916 In file included from /usr/include/c++/10/vector:72, 2021-07-14T11:29:44,916 from PTM/voronoi/cell.hpp:15, 2021-07-14T11:29:44,917 from PTM/voronoi/cell.cpp:16: 2021-07-14T11:29:44,917 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T11:29:44,917 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:44,917 426 | vector<_Tp, _Alloc>:: 2021-07-14T11:29:44,917 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:44,978 /usr/include/c++/10/bits/vector.tcc: In member function ‘void voro::voronoicell_base::face_areas(std::vector&)’: 2021-07-14T11:29:44,978 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:44,979 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T11:29:44,979 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:45,251 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT.o 2021-07-14T11:29:47,140 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::SetAtoms(PyObject*, AsapNS::Atoms*)’: 2021-07-14T11:29:47,140 Potentials/EMT.cpp:193:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:47,140 193 | for (int i = 0; i < parameters.size(); i++) 2021-07-14T11:29:47,140 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:47,153 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::Allocate()’: 2021-07-14T11:29:47,154 Potentials/EMT.cpp:242:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:47,154 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T11:29:47,154 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-14T11:29:47,154 Potentials/EMT.cpp:242:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:47,154 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T11:29:47,155 | ~~~~~~~^~~~~~~~~~~~~ 2021-07-14T11:29:47,155 Potentials/EMT.cpp:251:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:47,155 251 | if (force.capacity() < nSize) 2021-07-14T11:29:47,155 | ~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:29:47,155 Potentials/EMT.cpp:262:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:47,155 262 | if (Eas.capacity() < nAtoms) 2021-07-14T11:29:47,155 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:29:47,157 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::AllocateStress()’: 2021-07-14T11:29:47,157 Potentials/EMT.cpp:302:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:47,157 302 | if (ghostatoms && (virials.capacity() < nSize)) 2021-07-14T11:29:47,157 | ~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:29:47,160 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:47,160 from Potentials/EMT.h:34, 2021-07-14T11:29:47,160 from Potentials/EMT.cpp:34: 2021-07-14T11:29:47,160 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::InitParameters()’: 2021-07-14T11:29:47,160 Potentials/EMT.cpp:324:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:47,161 324 | ASSERT(nelements == elements_set.size()); 2021-07-14T11:29:47,161 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:47,161 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:47,161 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:47,161 | ^~ 2021-07-14T11:29:47,177 Potentials/EMT.cpp: In member function ‘virtual const std::vector& AsapNS::EMT::GetPotentialEnergies(PyObject*)’: 2021-07-14T11:29:47,178 Potentials/EMT.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:47,178 538 | ASSERT(Epot.size() == nAtoms); 2021-07-14T11:29:47,178 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:29:47,178 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:47,178 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:47,178 | ^~ 2021-07-14T11:29:47,213 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T11:29:47,214 Potentials/EMT.cpp:1259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:47,214 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T11:29:47,214 | ~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:29:47,214 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:47,214 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:47,215 | ^~ 2021-07-14T11:29:47,215 Potentials/EMT.cpp:1259:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:47,215 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T11:29:47,215 | ~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:29:47,215 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:47,215 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:47,215 | ^~ 2021-07-14T11:29:47,216 Potentials/EMT.cpp:1260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:47,216 1260 | nSize == dEds.size()); 2021-07-14T11:29:47,216 | ~~~~~~^~~~~~~~~~~~~~ 2021-07-14T11:29:47,216 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:47,216 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:47,216 | ^~ 2021-07-14T11:29:47,226 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergies()’: 2021-07-14T11:29:47,227 Potentials/EMT.cpp:1425:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:47,227 1425 | ASSERT(virials.size() == nSize); 2021-07-14T11:29:47,227 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:29:47,227 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:47,227 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:47,227 | ^~ 2021-07-14T11:29:47,236 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergiesSingle()’: 2021-07-14T11:29:47,236 Potentials/EMT.cpp:1544:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:47,236 1544 | ASSERT(this->force.size() >= nSize); 2021-07-14T11:29:47,236 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:29:47,237 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:47,237 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:47,237 | ^~ 2021-07-14T11:29:47,237 Potentials/EMT.cpp:1547:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:47,237 1547 | ASSERT(virials.size() == nSize); 2021-07-14T11:29:47,237 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:29:47,238 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:47,238 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:47,238 | ^~ 2021-07-14T11:29:53,896 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT2013.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o 2021-07-14T11:29:55,744 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:55,745 from Potentials/EMT.h:34, 2021-07-14T11:29:55,745 from Potentials/EMT2013.h:13, 2021-07-14T11:29:55,745 from Potentials/EMT2013.cpp:8: 2021-07-14T11:29:55,745 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::InitParameters()’: 2021-07-14T11:29:55,745 Potentials/EMT2013.cpp:105:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:55,745 105 | ASSERT(nelements == elements_set.size()); 2021-07-14T11:29:55,745 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:55,746 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:55,746 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:55,746 | ^~ 2021-07-14T11:29:55,780 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T11:29:55,781 Potentials/EMT2013.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:55,781 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T11:29:55,781 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:55,781 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:55,781 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:55,781 | ^~ 2021-07-14T11:29:55,782 Potentials/EMT2013.cpp:568:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:55,782 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T11:29:55,782 | ~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:55,782 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:55,782 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:55,782 | ^~ 2021-07-14T11:29:55,782 Potentials/EMT2013.cpp:569:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:55,783 569 | nSize == this->dEds.size()); 2021-07-14T11:29:55,783 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:55,783 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:55,783 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:55,783 | ^~ 2021-07-14T11:29:58,479 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o 2021-07-14T11:30:00,894 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o 2021-07-14T11:30:03,153 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o 2021-07-14T11:30:05,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/LennardJones.cpp -o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o 2021-07-14T11:30:06,966 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetVirials(PyObject*)’: 2021-07-14T11:30:06,966 Potentials/LennardJones.cpp:374:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:30:06,966 374 | if (nAtoms != virials.size()) 2021-07-14T11:30:06,967 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:30:06,972 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:06,973 from Potentials/LennardJones.cpp:43: 2021-07-14T11:30:06,973 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetForces(PyObject*)’: 2021-07-14T11:30:06,973 Potentials/LennardJones.cpp:484:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:06,973 484 | ASSERT(forces.size() == nSize); 2021-07-14T11:30:06,973 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:30:06,974 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:06,974 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:06,974 | ^~ 2021-07-14T11:30:06,977 Potentials/LennardJones.cpp: In member function ‘double AsapNS::LennardJones::CalculateEnergyAndEnergies()’: 2021-07-14T11:30:06,977 Potentials/LennardJones.cpp:580:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:06,977 580 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:30:06,978 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:30:06,978 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:06,978 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:06,978 | ^~ 2021-07-14T11:30:09,679 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o 2021-07-14T11:30:11,492 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:11,493 from Potentials/MetalOxideInterface.cpp:29: 2021-07-14T11:30:11,493 Potentials/MetalOxideInterface.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface::GetForces(PyObject*)’: 2021-07-14T11:30:11,493 Potentials/MetalOxideInterface.cpp:316:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:11,493 316 | ASSERT(forces.size() == nSize); 2021-07-14T11:30:11,493 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:30:11,494 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:11,494 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:11,494 | ^~ 2021-07-14T11:30:11,510 Potentials/MetalOxideInterface.cpp: In member function ‘double AsapNS::MetalOxideInterface::CalculateEnergyAndEnergies()’: 2021-07-14T11:30:11,510 Potentials/MetalOxideInterface.cpp:571:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:11,510 571 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:30:11,510 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:30:11,510 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:11,511 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:11,511 | ^~ 2021-07-14T11:30:15,057 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface2.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o 2021-07-14T11:30:16,873 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:16,873 from Potentials/MetalOxideInterface2.cpp:43: 2021-07-14T11:30:16,873 Potentials/MetalOxideInterface2.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface2::GetForces(PyObject*)’: 2021-07-14T11:30:16,873 Potentials/MetalOxideInterface2.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:16,874 330 | ASSERT(forces.size() == nSize); 2021-07-14T11:30:16,874 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:30:16,874 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:16,874 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:16,874 | ^~ 2021-07-14T11:30:16,888 Potentials/MetalOxideInterface2.cpp: In member function ‘double AsapNS::MetalOxideInterface2::CalculateEnergyAndEnergies()’: 2021-07-14T11:30:16,889 Potentials/MetalOxideInterface2.cpp:552:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:16,889 552 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:30:16,889 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:30:16,889 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:16,889 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:16,890 | ^~ 2021-07-14T11:30:20,625 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MonteCarloEMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o 2021-07-14T11:30:24,466 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Morse.cpp -o build/temp.linux-armv7l-3.9/Potentials/Morse.o 2021-07-14T11:30:26,300 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:26,300 from Potentials/Morse.cpp:43: 2021-07-14T11:30:26,301 Potentials/Morse.cpp: In member function ‘double AsapNS::Morse::CalculateEnergyAndEnergies()’: 2021-07-14T11:30:26,301 Potentials/Morse.cpp:472:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:26,301 472 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:30:26,301 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:30:26,301 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:26,301 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:26,302 | ^~ 2021-07-14T11:30:28,338 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T11:30:28,339 from Potentials/Morse.cpp:54: 2021-07-14T11:30:28,339 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:30:28,339 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,339 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-14T11:30:28,339 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,339 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,339 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,339 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,361 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-14T11:30:28,361 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,361 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-14T11:30:28,361 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,377 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:30:28,377 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,377 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-14T11:30:28,377 | ^~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,377 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,406 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-14T11:30:28,407 from /usr/include/c++/10/algorithm:62, 2021-07-14T11:30:28,407 from Potentials/Morse.cpp:54: 2021-07-14T11:30:28,407 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:30:28,407 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,407 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-14T11:30:28,407 | ^~~~~~~~~~~~~ 2021-07-14T11:30:28,447 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T11:30:28,448 from Potentials/Morse.cpp:54: 2021-07-14T11:30:28,448 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:30:28,448 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,448 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-14T11:30:28,448 | ^~~~~~~~~~~~~ 2021-07-14T11:30:28,448 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,448 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,449 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,482 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:30:28,482 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,482 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-14T11:30:28,482 | ^~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,482 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,482 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,483 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,483 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-14T11:30:28,483 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,483 1925 | __comp); 2021-07-14T11:30:28,483 | ~~~~~~~ 2021-07-14T11:30:28,483 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,483 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,483 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-14T11:30:28,484 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,484 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,484 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-14T11:30:28,484 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,522 /usr/include/c++/10/bits/stl_algo.h: In member function ‘double AsapNS::Morse::Add(std::vector&)’: 2021-07-14T11:30:28,523 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,523 1974 | std::__introsort_loop(__first, __last, 2021-07-14T11:30:28,523 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,523 1975 | std::__lg(__last - __first) * 2, 2021-07-14T11:30:28,523 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,523 1976 | __comp); 2021-07-14T11:30:28,523 | ~~~~~~~ 2021-07-14T11:30:28,524 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,524 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-14T11:30:28,524 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,524 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:30:28,524 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-14T11:30:28,524 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:28,913 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Potential.cpp -o build/temp.linux-armv7l-3.9/Potentials/Potential.o 2021-07-14T11:30:30,438 Potentials/Potential.cpp: In member function ‘virtual AsapNS::SymTensor AsapNS::Potential::GetVirial(PyObject*)’: 2021-07-14T11:30:30,438 Potentials/Potential.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:30:30,439 52 | for (int i = 0; i < virials.size(); i++) 2021-07-14T11:30:30,439 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T11:30:30,850 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RGL.cpp -o build/temp.linux-armv7l-3.9/Potentials/RGL.o 2021-07-14T11:30:32,690 Potentials/RGL.cpp: In member function ‘void AsapNS::RGL::Allocate()’: 2021-07-14T11:30:32,690 Potentials/RGL.cpp:127:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:30:32,690 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T11:30:32,690 | ~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:30:32,691 Potentials/RGL.cpp:127:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:30:32,691 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T11:30:32,691 | ~~~~~~~^~~~~~~~~~~~~~ 2021-07-14T11:30:35,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o 2021-07-14T11:30:37,291 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:37,291 from Potentials/RahmanStillingerLemberg.cpp:43: 2021-07-14T11:30:37,291 Potentials/RahmanStillingerLemberg.cpp: In member function ‘virtual const std::vector& AsapNS::RahmanStillingerLemberg::GetForces(PyObject*)’: 2021-07-14T11:30:37,291 Potentials/RahmanStillingerLemberg.cpp:355:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:37,291 355 | ASSERT(forces.size() == nSize); 2021-07-14T11:30:37,291 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:30:37,292 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:37,292 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:37,292 | ^~ 2021-07-14T11:30:37,300 Potentials/RahmanStillingerLemberg.cpp: In member function ‘double AsapNS::RahmanStillingerLemberg::CalculateEnergyAndEnergies()’: 2021-07-14T11:30:37,301 Potentials/RahmanStillingerLemberg.cpp:452:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:37,301 452 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:30:37,301 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:30:37,301 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:37,301 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:37,301 | ^~ 2021-07-14T11:30:40,231 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CNA.cpp -o build/temp.linux-armv7l-3.9/Tools/CNA.o 2021-07-14T11:30:41,919 Tools/CNA.cpp: In function ‘void AsapNS::CNA(PyObject*, double, std::vector&)’: 2021-07-14T11:30:41,919 Tools/CNA.cpp:54:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:30:41,919 54 | for (unsigned int a2 = 0; a2 < nTotal; a2++) 2021-07-14T11:30:41,920 | ~~~^~~~~~~~ 2021-07-14T11:30:41,923 Tools/CNA.cpp:62:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:41,923 62 | if (a1 < a2) 2021-07-14T11:30:41,923 | ~~~^~~~ 2021-07-14T11:30:41,924 Tools/CNA.cpp:82:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:30:41,924 82 | for (unsigned int j1 = 0; j1 < j2; j1++) 2021-07-14T11:30:41,924 | ~~~^~~~ 2021-07-14T11:30:42,993 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CoordinationNumbers.cpp -o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o 2021-07-14T11:30:45,252 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/FullCNA.cpp -o build/temp.linux-armv7l-3.9/Tools/FullCNA.o 2021-07-14T11:30:49,777 In file included from /usr/include/c++/10/map:60, 2021-07-14T11:30:49,777 from Tools/FullCNA.h:35, 2021-07-14T11:30:49,777 from Tools/FullCNA.cpp:24: 2021-07-14T11:30:49,777 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T11:30:49,777 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T11:30:49,777 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T11:30:49,778 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:50,164 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T11:30:50,165 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T11:30:50,165 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T11:30:50,165 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:50,210 In file included from /usr/include/c++/10/map:61, 2021-07-14T11:30:50,210 from Tools/FullCNA.h:35, 2021-07-14T11:30:50,211 from Tools/FullCNA.cpp:24: 2021-07-14T11:30:50,211 /usr/include/c++/10/bits/stl_map.h: In member function ‘void AsapNS::FullCNA::SetMultipleCutoffs(std::map, double>&)’: 2021-07-14T11:30:50,211 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T11:30:50,211 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T11:30:50,211 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:50,211 502 | std::tuple(__k), 2021-07-14T11:30:50,211 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:50,211 503 | std::tuple<>()); 2021-07-14T11:30:50,212 | ~~~~~~~~~~~~~~~ 2021-07-14T11:30:50,212 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T11:30:50,212 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T11:30:50,212 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:50,212 502 | std::tuple(__k), 2021-07-14T11:30:50,212 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:50,212 503 | std::tuple<>()); 2021-07-14T11:30:50,212 | ~~~~~~~~~~~~~~~ 2021-07-14T11:30:51,114 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/GetNeighborList.cpp -o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o 2021-07-14T11:30:53,404 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/RawRadialDistribution.cpp -o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o 2021-07-14T11:30:55,064 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:55,065 from Tools/RawRadialDistribution.cpp:29: 2021-07-14T11:30:55,065 Tools/RawRadialDistribution.cpp: In function ‘void AsapNS::RawRadialDistribution(PyObject*, int, const int*, double, int, AsapNS::RDFtype&, AsapNS::RDFcountType&, long int*)’: 2021-07-14T11:30:55,065 Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integer expressions of different signedness: ‘std::vector, long int*> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:55,065 55 | ASSERT(result.size() == nGroups); 2021-07-14T11:30:55,065 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T11:30:55,065 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:55,065 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:55,066 | ^~ 2021-07-14T11:30:55,074 Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:30:55,074 56 | ASSERT(counts.size() == nGroups); 2021-07-14T11:30:55,074 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T11:30:55,074 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:55,074 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:55,075 | ^~ 2021-07-14T11:30:56,685 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o 2021-07-14T11:30:59,246 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c VersionInfo_autogen/version_piwheels45_s.cpp -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels45_s.o 2021-07-14T11:30:59,464 VersionInfo_autogen/version_piwheels45_s.cpp:15:61: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2021-07-14T11:30:59,465 15 | return ("ASAP version 3.11.8 serial, compiled " __DATE__ " " __TIME__ " on piwheels45 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T11:30:59,465 | ^~~~~~~~ 2021-07-14T11:30:59,465 VersionInfo_autogen/version_piwheels45_s.cpp:15:74: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2021-07-14T11:30:59,465 15 | return ("ASAP version 3.11.8 serial, compiled " __DATE__ " " __TIME__ " on piwheels45 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T11:30:59,465 | ^~~~~~~~ 2021-07-14T11:31:00,082 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels45_s.o -lm -o build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so 2021-07-14T11:31:01,552 *** Building the asap-python executable *** 2021-07-14T11:31:01,554 *** COMPILING: ['ParallelInterface/mpi.c'] 2021-07-14T11:31:01,554 mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o -c ParallelInterface/mpi.c 2021-07-14T11:31:02,998 *** COMPILING: ['Parallel/ParallelAtoms.cpp', 'Parallel/ParallelPotential.cpp', 'Parallel/RegularGridDecomposition.cpp', 'ParallelInterface/AsapParallel.cpp', 'ParallelInterface/ParallelAtomsInterface.cpp', 'ParallelInterface/ParallelNeighborListInterface.cpp', 'ParallelInterface/ParallelPotentialInterface.cpp', 'VersionInfo_autogen/version_piwheels45_p.cpp'] 2021-07-14T11:31:02,998 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o -c Parallel/ParallelAtoms.cpp 2021-07-14T11:31:04,837 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:04,838 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:31:04,838 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:31:04,838 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T11:31:04,838 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:04,838 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T11:31:04,838 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:04,839 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:04,839 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:04,839 | ^~ 2021-07-14T11:31:04,839 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T11:31:04,839 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:04,839 301 | ASSERT(sendbuf.size() == size); 2021-07-14T11:31:04,840 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:31:04,840 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:04,840 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:04,840 | ^~ 2021-07-14T11:31:04,874 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::Migrate(bool)’: 2021-07-14T11:31:04,875 Parallel/ParallelAtoms.cpp:241:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:04,875 241 | (sendlist->size() < nProcessors)); 2021-07-14T11:31:04,875 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2021-07-14T11:31:04,875 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:04,875 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:04,875 | ^~ 2021-07-14T11:31:04,910 Parallel/ParallelAtoms.cpp:318:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:04,910 318 | for (int j = 0; j < arrays.size(); j++) 2021-07-14T11:31:04,910 | ~~^~~~~~~~~~~~~~~ 2021-07-14T11:31:04,911 Parallel/ParallelAtoms.cpp:338:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:04,911 338 | for (int j = 0; j < new_arrays.size(); j++) 2021-07-14T11:31:04,911 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:04,912 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:04,912 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:31:04,912 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:31:04,912 Parallel/ParallelAtoms.cpp:345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:04,912 345 | ASSERT(b - b0 == receiveBuffer.size()); 2021-07-14T11:31:04,912 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:04,912 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:04,913 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:04,913 | ^~ 2021-07-14T11:31:04,957 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::UpdateGhostData()’: 2021-07-14T11:31:04,957 Parallel/ParallelAtoms.cpp:609:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:04,958 609 | for (int i = 0; i < array_names.size(); i++) 2021-07-14T11:31:04,958 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:04,959 Parallel/ParallelAtoms.cpp:630:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:04,960 630 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T11:31:04,960 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:04,960 Parallel/ParallelAtoms.cpp:637:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:04,960 637 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T11:31:04,960 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:04,967 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:04,968 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:31:04,968 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:31:04,968 Parallel/ParallelAtoms.cpp:649:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:04,968 649 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); 2021-07-14T11:31:04,968 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:04,968 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:04,968 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:04,969 | ^~ 2021-07-14T11:31:04,969 Parallel/ParallelAtoms.cpp:659:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:04,969 659 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T11:31:04,969 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:04,974 Parallel/ParallelAtoms.cpp: In member function ‘virtual void AsapNS::ParallelAtoms::CommunicateData(double*, int)’: 2021-07-14T11:31:04,975 Parallel/ParallelAtoms.cpp:717:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:04,975 717 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T11:31:04,975 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:05,008 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:05,008 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:31:05,009 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:31:05,009 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T11:31:05,009 Parallel/ParallelAtoms.cpp:1105:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:05,009 1105 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T11:31:05,009 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:05,009 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:05,010 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:05,010 | ^~ 2021-07-14T11:31:05,010 Parallel/ParallelAtoms.cpp:1111:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:05,010 1111 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T11:31:05,010 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:05,021 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:05,021 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:31:05,021 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:31:05,022 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T11:31:05,022 Parallel/ParallelAtoms.cpp:1138:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:05,022 1138 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T11:31:05,022 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:05,022 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:05,022 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:05,023 | ^~ 2021-07-14T11:31:05,023 Parallel/ParallelAtoms.cpp:1144:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:05,023 1144 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T11:31:05,023 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:10,399 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o -c Parallel/ParallelPotential.cpp 2021-07-14T11:31:12,221 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:12,221 from Parallel/ParallelPotential.h:28, 2021-07-14T11:31:12,221 from Parallel/ParallelPotential.cpp:24: 2021-07-14T11:31:12,221 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T11:31:12,222 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:12,222 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T11:31:12,222 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:12,222 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:12,222 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:12,222 | ^~ 2021-07-14T11:31:12,222 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T11:31:12,223 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:12,223 301 | ASSERT(sendbuf.size() == size); 2021-07-14T11:31:12,223 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:31:12,223 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:12,223 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:12,223 | ^~ 2021-07-14T11:31:13,988 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o -c Parallel/RegularGridDecomposition.cpp 2021-07-14T11:31:15,839 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:15,839 from Parallel/RegularGridDecomposition.cpp:24: 2021-07-14T11:31:15,839 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T11:31:15,839 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:15,839 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T11:31:15,840 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:15,840 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:15,840 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:15,840 | ^~ 2021-07-14T11:31:15,840 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T11:31:15,840 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:15,840 301 | ASSERT(sendbuf.size() == size); 2021-07-14T11:31:15,841 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:31:15,841 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:15,841 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:15,841 | ^~ 2021-07-14T11:31:18,535 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o -c ParallelInterface/AsapParallel.cpp 2021-07-14T11:31:20,708 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o -c ParallelInterface/ParallelAtomsInterface.cpp 2021-07-14T11:31:22,546 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o -c ParallelInterface/ParallelNeighborListInterface.cpp 2021-07-14T11:31:23,975 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:23,975 from ParallelInterface/ParallelNeighborListInterface.cpp:2: 2021-07-14T11:31:23,976 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:31:23,976 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:23,976 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:31:23,976 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:23,976 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:23,976 | ^~ 2021-07-14T11:31:23,986 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:31:23,986 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:23,986 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:31:23,986 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:23,987 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:23,987 | ^~ 2021-07-14T11:31:23,994 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:31:23,994 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:23,994 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:31:23,994 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:23,995 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:23,995 | ^~ 2021-07-14T11:31:24,006 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:31:24,006 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:24,007 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:31:24,007 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:24,007 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:24,007 | ^~ 2021-07-14T11:31:24,018 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:31:24,019 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:24,019 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:31:24,019 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:24,019 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:24,019 | ^~ 2021-07-14T11:31:24,211 ParallelInterface/ParallelNeighborListInterface.cpp: In function ‘PyObject* PyAsap_NewNeighborCellLocator_Parallel(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:31:24,211 ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:31:24,211 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:31:24,211 | ^~~~~~ 2021-07-14T11:31:24,212 ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:31:24,212 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:31:24,212 | ^~~~~~~ 2021-07-14T11:31:24,212 ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:31:24,212 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:31:24,212 | ^~~~~~~~~~~~~ 2021-07-14T11:31:24,595 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o -c ParallelInterface/ParallelPotentialInterface.cpp 2021-07-14T11:31:25,964 ParallelInterface/ParallelPotentialInterface.cpp: In function ‘int PyAsap_ParPotInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:31:25,964 ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:31:25,965 48 | static char *kwlist[] = {"potential", NULL}; 2021-07-14T11:31:25,965 | ^~~~~~~~~~~ 2021-07-14T11:31:26,360 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels45_p.o -c VersionInfo_autogen/version_piwheels45_p.cpp 2021-07-14T11:31:27,170 mpicxx -o build/bin.linux-armv7l-3.9/asap-python build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels45_p.o -L/usr/lib/python3.9/config-3.9-arm-linux-gnueabihf -lm -lpython3.9 -lm -lpython3.9 -lcrypt -lpthread -ldl -lutil -lm -lm -Wl,-z,relro -g -fwrapv -O2 -lexpat -L/usr/lib -lz -lexpat -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-14T11:31:28,930 running build_scripts 2021-07-14T11:31:28,930 Protecting build/bin.linux-armv7l-3.9/asap-python from ajustment 2021-07-14T11:31:28,930 creating build/scripts-3.9 2021-07-14T11:31:28,932 copying and adjusting scripts/asap-qsub -> build/scripts-3.9 2021-07-14T11:31:28,934 copying and adjusting scripts/asap-sbatch -> build/scripts-3.9 2021-07-14T11:31:28,936 changing mode of build/scripts-3.9/asap-qsub from 644 to 755 2021-07-14T11:31:28,936 changing mode of build/scripts-3.9/asap-sbatch from 644 to 755 2021-07-14T11:31:28,937 copying build/bin.linux-armv7l-3.9/asap-python -> build/scripts-3.9 2021-07-14T11:31:29,222 installing to build/bdist.linux-armv7l/wheel 2021-07-14T11:31:29,223 running install 2021-07-14T11:31:29,224 running install_lib 2021-07-14T11:31:29,229 creating build/bdist.linux-armv7l 2021-07-14T11:31:29,229 creating build/bdist.linux-armv7l/wheel 2021-07-14T11:31:29,230 copying build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-14T11:31:29,438 creating build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,440 creating build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,441 copying build/lib.linux-armv7l-3.9/asap3/analysis/findcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,444 copying build/lib.linux-armv7l-3.9/asap3/analysis/averagepositions.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,447 copying build/lib.linux-armv7l-3.9/asap3/analysis/ptm.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,450 copying build/lib.linux-armv7l-3.9/asap3/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,452 copying build/lib.linux-armv7l-3.9/asap3/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,455 copying build/lib.linux-armv7l-3.9/asap3/analysis/localstructure.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,458 copying build/lib.linux-armv7l-3.9/asap3/analysis/clusterposition.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,460 copying build/lib.linux-armv7l-3.9/asap3/analysis/cutcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,462 copying build/lib.linux-armv7l-3.9/asap3/analysis/particle.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:31:29,465 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:31:29,467 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Basin.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:31:29,469 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Metropolis.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:31:29,471 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Start.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:31:29,474 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:31:29,476 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:31:29,479 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T11:31:29,480 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T11:31:29,482 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T11:31:29,485 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T11:31:29,487 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T11:31:29,490 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T11:31:29,493 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T11:31:29,495 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Surface.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T11:31:29,499 creating build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,500 copying build/lib.linux-armv7l-3.9/asap3/Internal/BuiltinPotentials.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,504 copying build/lib.linux-armv7l-3.9/asap3/Internal/Builtins.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,506 copying build/lib.linux-armv7l-3.9/asap3/Internal/ParallelListOfAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,509 copying build/lib.linux-armv7l-3.9/asap3/Internal/checkversion.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,511 copying build/lib.linux-armv7l-3.9/asap3/Internal/Collector.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,515 copying build/lib.linux-armv7l-3.9/asap3/Internal/CheckArray.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,517 copying build/lib.linux-armv7l-3.9/asap3/Internal/OpenKIMcalculator.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,520 copying build/lib.linux-armv7l-3.9/asap3/Internal/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,522 copying build/lib.linux-armv7l-3.9/asap3/Internal/Threads.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,525 creating build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T11:31:29,526 copying build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T11:31:29,528 copying build/lib.linux-armv7l-3.9/asap3/Internal/UtilityFunctions.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,530 copying build/lib.linux-armv7l-3.9/asap3/Internal/ListOfElements.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,533 copying build/lib.linux-armv7l-3.9/asap3/Internal/MonteCarloAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,535 copying build/lib.linux-armv7l-3.9/asap3/Internal/EMTParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,538 copying build/lib.linux-armv7l-3.9/asap3/Internal/Subject.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:31:29,540 copying build/lib.linux-armv7l-3.9/asap3/GuptaParameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,542 copying build/lib.linux-armv7l-3.9/asap3/constraints.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,545 copying build/lib.linux-armv7l-3.9/asap3/EMT2011Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,548 creating build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,549 copying build/lib.linux-armv7l-3.9/asap3/Tools/Timing.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,552 copying build/lib.linux-armv7l-3.9/asap3/Tools/AtomicEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,555 creating build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,556 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/GetParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,558 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Search.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,561 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/EMT.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,564 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Sampling.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,567 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,571 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,574 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Performance.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,577 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Quantities.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,581 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,584 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Optimization.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,587 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/RGL.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:31:29,589 copying build/lib.linux-armv7l-3.9/asap3/Tools/SurfaceEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,592 copying build/lib.linux-armv7l-3.9/asap3/Tools/AsapFileToTrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,595 copying build/lib.linux-armv7l-3.9/asap3/Tools/MaterialProperties.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,598 copying build/lib.linux-armv7l-3.9/asap3/Tools/OptimizationDatabase.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,600 copying build/lib.linux-armv7l-3.9/asap3/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,602 copying build/lib.linux-armv7l-3.9/asap3/Tools/ElasticConstants.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,605 copying build/lib.linux-armv7l-3.9/asap3/Tools/niflheim.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,607 copying build/lib.linux-armv7l-3.9/asap3/Tools/EMT_two_atom_test.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:31:29,611 creating build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,612 copying build/lib.linux-armv7l-3.9/asap3/md/verlet.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,614 copying build/lib.linux-armv7l-3.9/asap3/md/npt.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,616 copying build/lib.linux-armv7l-3.9/asap3/md/langevin.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,619 copying build/lib.linux-armv7l-3.9/asap3/md/md.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,622 copying build/lib.linux-armv7l-3.9/asap3/md/nvtberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,624 copying build/lib.linux-armv7l-3.9/asap3/md/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,626 copying build/lib.linux-armv7l-3.9/asap3/md/verlet_fast.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,629 copying build/lib.linux-armv7l-3.9/asap3/md/nptberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,631 copying build/lib.linux-armv7l-3.9/asap3/md/velocitydistribution.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:31:29,633 copying build/lib.linux-armv7l-3.9/asap3/EMT2011_py.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,637 creating build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:31:29,638 copying build/lib.linux-armv7l-3.9/asap3/io/cpu_setup.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:31:29,640 copying build/lib.linux-armv7l-3.9/asap3/io/bundletrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:31:29,643 copying build/lib.linux-armv7l-3.9/asap3/io/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:31:29,645 copying build/lib.linux-armv7l-3.9/asap3/io/trajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:31:29,648 copying build/lib.linux-armv7l-3.9/asap3/io/ReadOldFiles.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:31:29,650 copying build/lib.linux-armv7l-3.9/asap3/__init__.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,652 copying build/lib.linux-armv7l-3.9/asap3/fixepydoc.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,654 copying build/lib.linux-armv7l-3.9/asap3/timing.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,656 copying build/lib.linux-armv7l-3.9/asap3/memory.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,658 copying build/lib.linux-armv7l-3.9/asap3/EMT2013Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,661 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,662 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/AdsCalc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,664 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/mc_result.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,666 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/cluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,668 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/resizecluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,670 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/clusteratom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,673 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,675 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:31:29,676 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:31:29,678 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/au.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:31:29,680 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:31:29,681 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:31:29,684 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/langmuirExpression.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,686 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/atommontecarlodata.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,688 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/Logger.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:31:29,690 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:31:29,691 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/atom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:31:29,694 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/surface.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:31:29,697 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:31:29,700 creating build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:31:29,701 copying build/lib.linux-armv7l-3.9/asap3/optimize/optimize.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:31:29,703 copying build/lib.linux-armv7l-3.9/asap3/optimize/mdmin.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:31:29,705 copying build/lib.linux-armv7l-3.9/asap3/optimize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:31:29,707 copying build/lib.linux-armv7l-3.9/asap3/optimize/fire.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:31:29,709 copying build/lib.linux-armv7l-3.9/asap3/version.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,710 copying build/lib.linux-armv7l-3.9/asap3/testtools.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,712 copying build/lib.linux-armv7l-3.9/asap3/mpi.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:31:29,715 creating build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:31:29,716 copying build/lib.linux-armv7l-3.9/asap3/setup/displacementfield.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:31:29,718 copying build/lib.linux-armv7l-3.9/asap3/setup/multidislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:31:29,721 creating build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,722 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,725 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/energy.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,727 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,729 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/quat_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,732 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/dislocated.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,734 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/grain_structures.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,737 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,739 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/helpers.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,741 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/plane_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:31:29,743 copying build/lib.linux-armv7l-3.9/asap3/setup/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:31:29,745 copying build/lib.linux-armv7l-3.9/asap3/setup/VelocityDistribution.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:31:29,747 copying build/lib.linux-armv7l-3.9/asap3/setup/dislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:31:29,749 running install_egg_info 2021-07-14T11:31:29,778 running egg_info 2021-07-14T11:31:29,779 creating asap3.egg-info 2021-07-14T11:31:29,780 writing asap3.egg-info/PKG-INFO 2021-07-14T11:31:29,782 writing dependency_links to asap3.egg-info/dependency_links.txt 2021-07-14T11:31:29,784 writing top-level names to asap3.egg-info/top_level.txt 2021-07-14T11:31:29,786 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T11:31:29,868 reading manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T11:31:29,870 reading manifest template 'MANIFEST.in' 2021-07-14T11:31:29,966 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T11:31:29,967 adding license file 'LICENSE' 2021-07-14T11:31:29,967 adding license file 'LICENSE.LESSER' 2021-07-14T11:31:29,991 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T11:31:29,994 Copying asap3.egg-info to build/bdist.linux-armv7l/wheel/asap3-3.11.8-py3.9.egg-info 2021-07-14T11:31:30,003 running install_scripts 2021-07-14T11:31:30,070 creating build/bdist.linux-armv7l/wheel/asap3-3.11.8.data 2021-07-14T11:31:30,070 creating build/bdist.linux-armv7l/wheel/asap3-3.11.8.data/scripts 2021-07-14T11:31:30,072 copying build/scripts-3.9/asap-python -> build/bdist.linux-armv7l/wheel/asap3-3.11.8.data/scripts 2021-07-14T11:31:30,338 copying build/scripts-3.9/asap-sbatch -> build/bdist.linux-armv7l/wheel/asap3-3.11.8.data/scripts 2021-07-14T11:31:30,340 copying build/scripts-3.9/asap-qsub -> build/bdist.linux-armv7l/wheel/asap3-3.11.8.data/scripts 2021-07-14T11:31:30,342 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.8.data/scripts/asap-python to 755 2021-07-14T11:31:30,343 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.8.data/scripts/asap-sbatch to 755 2021-07-14T11:31:30,343 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.8.data/scripts/asap-qsub to 755 2021-07-14T11:31:30,359 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-14T11:31:30,359 adding license file "LICENSE.LESSER" (matched pattern "LICEN[CS]E*") 2021-07-14T11:31:30,367 creating build/bdist.linux-armv7l/wheel/asap3-3.11.8.dist-info/WHEEL 2021-07-14T11:31:30,370 creating '/tmp/pip-wheel-uxpaowm8/asap3-3.11.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T11:31:32,435 adding '_asap_p3.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T11:31:32,521 adding 'asap3/EMT2011Parameters.py' 2021-07-14T11:31:32,524 adding 'asap3/EMT2011_py.py' 2021-07-14T11:31:32,526 adding 'asap3/EMT2013Parameters.py' 2021-07-14T11:31:32,527 adding 'asap3/GuptaParameters.py' 2021-07-14T11:31:32,529 adding 'asap3/__init__.py' 2021-07-14T11:31:32,530 adding 'asap3/constraints.py' 2021-07-14T11:31:32,531 adding 'asap3/fixepydoc.py' 2021-07-14T11:31:32,532 adding 'asap3/memory.py' 2021-07-14T11:31:32,533 adding 'asap3/mpi.py' 2021-07-14T11:31:32,535 adding 'asap3/testtools.py' 2021-07-14T11:31:32,536 adding 'asap3/timing.py' 2021-07-14T11:31:32,537 adding 'asap3/version.py' 2021-07-14T11:31:32,541 adding 'asap3/Internal/BuiltinPotentials.py' 2021-07-14T11:31:32,542 adding 'asap3/Internal/Builtins.py' 2021-07-14T11:31:32,543 adding 'asap3/Internal/CheckArray.py' 2021-07-14T11:31:32,545 adding 'asap3/Internal/Collector.py' 2021-07-14T11:31:32,546 adding 'asap3/Internal/EMTParameters.py' 2021-07-14T11:31:32,548 adding 'asap3/Internal/ListOfElements.py' 2021-07-14T11:31:32,549 adding 'asap3/Internal/MonteCarloAtoms.py' 2021-07-14T11:31:32,551 adding 'asap3/Internal/OpenKIMcalculator.py' 2021-07-14T11:31:32,554 adding 'asap3/Internal/ParallelListOfAtoms.py' 2021-07-14T11:31:32,555 adding 'asap3/Internal/Subject.py' 2021-07-14T11:31:32,557 adding 'asap3/Internal/Threads.py' 2021-07-14T11:31:32,558 adding 'asap3/Internal/UtilityFunctions.py' 2021-07-14T11:31:32,559 adding 'asap3/Internal/__init__.py' 2021-07-14T11:31:32,560 adding 'asap3/Internal/checkversion.py' 2021-07-14T11:31:32,562 adding 'asap3/Internal/Compatibility/__init__.py' 2021-07-14T11:31:32,564 adding 'asap3/MonteCarlo/Base.py' 2021-07-14T11:31:32,565 adding 'asap3/MonteCarlo/Basin.py' 2021-07-14T11:31:32,566 adding 'asap3/MonteCarlo/Metropolis.py' 2021-07-14T11:31:32,567 adding 'asap3/MonteCarlo/Start.py' 2021-07-14T11:31:32,568 adding 'asap3/MonteCarlo/__init__.py' 2021-07-14T11:31:32,571 adding 'asap3/MonteCarlo/Moves/Base.py' 2021-07-14T11:31:32,573 adding 'asap3/MonteCarlo/Moves/Surface.py' 2021-07-14T11:31:32,575 adding 'asap3/MonteCarlo/Moves/__init__.py' 2021-07-14T11:31:32,576 adding 'asap3/MonteCarlo/Moves/Data/__init__.py' 2021-07-14T11:31:32,578 adding 'asap3/MonteCarlo/Moves/Data/fcc.py' 2021-07-14T11:31:32,579 adding 'asap3/MonteCarlo/Moves/Data/symmetry.py' 2021-07-14T11:31:32,582 adding 'asap3/Tools/AsapFileToTrajectory.py' 2021-07-14T11:31:32,583 adding 'asap3/Tools/AtomicEnergies.py' 2021-07-14T11:31:32,584 adding 'asap3/Tools/EMT_two_atom_test.py' 2021-07-14T11:31:32,586 adding 'asap3/Tools/ElasticConstants.py' 2021-07-14T11:31:32,588 adding 'asap3/Tools/MaterialProperties.py' 2021-07-14T11:31:32,589 adding 'asap3/Tools/OptimizationDatabase.py' 2021-07-14T11:31:32,591 adding 'asap3/Tools/SurfaceEnergies.py' 2021-07-14T11:31:32,592 adding 'asap3/Tools/Timing.py' 2021-07-14T11:31:32,594 adding 'asap3/Tools/__init__.py' 2021-07-14T11:31:32,595 adding 'asap3/Tools/niflheim.py' 2021-07-14T11:31:32,597 adding 'asap3/Tools/ParameterOptimization/EMT.py' 2021-07-14T11:31:32,598 adding 'asap3/Tools/ParameterOptimization/GetParameters.py' 2021-07-14T11:31:32,600 adding 'asap3/Tools/ParameterOptimization/Optimization.py' 2021-07-14T11:31:32,602 adding 'asap3/Tools/ParameterOptimization/Performance.py' 2021-07-14T11:31:32,605 adding 'asap3/Tools/ParameterOptimization/Quantities.py' 2021-07-14T11:31:32,607 adding 'asap3/Tools/ParameterOptimization/RGL.py' 2021-07-14T11:31:32,608 adding 'asap3/Tools/ParameterOptimization/Sampling.py' 2021-07-14T11:31:32,616 adding 'asap3/Tools/ParameterOptimization/ScipyFmin.py' 2021-07-14T11:31:32,618 adding 'asap3/Tools/ParameterOptimization/Search.py' 2021-07-14T11:31:32,620 adding 'asap3/Tools/ParameterOptimization/SearchParallel.py' 2021-07-14T11:31:32,622 adding 'asap3/Tools/ParameterOptimization/__init__.py' 2021-07-14T11:31:32,623 adding 'asap3/analysis/__init__.py' 2021-07-14T11:31:32,625 adding 'asap3/analysis/averagepositions.py' 2021-07-14T11:31:32,626 adding 'asap3/analysis/clusterposition.py' 2021-07-14T11:31:32,627 adding 'asap3/analysis/cutcluster.py' 2021-07-14T11:31:32,629 adding 'asap3/analysis/findcluster.py' 2021-07-14T11:31:32,631 adding 'asap3/analysis/localstructure.py' 2021-07-14T11:31:32,632 adding 'asap3/analysis/particle.py' 2021-07-14T11:31:32,635 adding 'asap3/analysis/ptm.py' 2021-07-14T11:31:32,637 adding 'asap3/analysis/rdf.py' 2021-07-14T11:31:32,639 adding 'asap3/io/ReadOldFiles.py' 2021-07-14T11:31:32,640 adding 'asap3/io/__init__.py' 2021-07-14T11:31:32,643 adding 'asap3/io/bundletrajectory.py' 2021-07-14T11:31:32,644 adding 'asap3/io/cpu_setup.py' 2021-07-14T11:31:32,646 adding 'asap3/io/trajectory.py' 2021-07-14T11:31:32,648 adding 'asap3/md/__init__.py' 2021-07-14T11:31:32,649 adding 'asap3/md/langevin.py' 2021-07-14T11:31:32,651 adding 'asap3/md/md.py' 2021-07-14T11:31:32,652 adding 'asap3/md/npt.py' 2021-07-14T11:31:32,653 adding 'asap3/md/nptberendsen.py' 2021-07-14T11:31:32,654 adding 'asap3/md/nvtberendsen.py' 2021-07-14T11:31:32,655 adding 'asap3/md/velocitydistribution.py' 2021-07-14T11:31:32,656 adding 'asap3/md/verlet.py' 2021-07-14T11:31:32,657 adding 'asap3/md/verlet_fast.py' 2021-07-14T11:31:32,659 adding 'asap3/nanoparticle_mc/AdsCalc.py' 2021-07-14T11:31:32,660 adding 'asap3/nanoparticle_mc/Logger.py' 2021-07-14T11:31:32,661 adding 'asap3/nanoparticle_mc/__init__.py' 2021-07-14T11:31:32,663 adding 'asap3/nanoparticle_mc/atommontecarlodata.py' 2021-07-14T11:31:32,666 adding 'asap3/nanoparticle_mc/cluster.py' 2021-07-14T11:31:32,667 adding 'asap3/nanoparticle_mc/clusteratom.py' 2021-07-14T11:31:32,669 adding 'asap3/nanoparticle_mc/langmuirExpression.py' 2021-07-14T11:31:32,670 adding 'asap3/nanoparticle_mc/mc_result.py' 2021-07-14T11:31:32,671 adding 'asap3/nanoparticle_mc/resizecluster.py' 2021-07-14T11:31:32,673 adding 'asap3/nanoparticle_mc/data/__init__.py' 2021-07-14T11:31:32,674 adding 'asap3/nanoparticle_mc/data/au.py' 2021-07-14T11:31:32,675 adding 'asap3/nanoparticle_mc/data/fcc.py' 2021-07-14T11:31:32,677 adding 'asap3/nanoparticle_mc/data/symmetry.py' 2021-07-14T11:31:32,679 adding 'asap3/nanoparticle_mc/montecarlo/__init__.py' 2021-07-14T11:31:32,683 adding 'asap3/nanoparticle_mc/montecarlo/atom.py' 2021-07-14T11:31:32,687 adding 'asap3/nanoparticle_mc/montecarlo/surface.py' 2021-07-14T11:31:32,689 adding 'asap3/optimize/__init__.py' 2021-07-14T11:31:32,690 adding 'asap3/optimize/fire.py' 2021-07-14T11:31:32,691 adding 'asap3/optimize/mdmin.py' 2021-07-14T11:31:32,692 adding 'asap3/optimize/optimize.py' 2021-07-14T11:31:32,694 adding 'asap3/setup/VelocityDistribution.py' 2021-07-14T11:31:32,695 adding 'asap3/setup/__init__.py' 2021-07-14T11:31:32,697 adding 'asap3/setup/dislocation.py' 2021-07-14T11:31:32,699 adding 'asap3/setup/displacementfield.py' 2021-07-14T11:31:32,701 adding 'asap3/setup/multidislocation.py' 2021-07-14T11:31:32,703 adding 'asap3/setup/nanocrystalline/__init__.py' 2021-07-14T11:31:32,704 adding 'asap3/setup/nanocrystalline/dislocated.py' 2021-07-14T11:31:32,705 adding 'asap3/setup/nanocrystalline/energy.py' 2021-07-14T11:31:32,707 adding 'asap3/setup/nanocrystalline/grain_structures.py' 2021-07-14T11:31:32,709 adding 'asap3/setup/nanocrystalline/helpers.py' 2021-07-14T11:31:32,710 adding 'asap3/setup/nanocrystalline/nanocrystalline.py' 2021-07-14T11:31:32,712 adding 'asap3/setup/nanocrystalline/nanocrystalline_orig.py' 2021-07-14T11:31:32,713 adding 'asap3/setup/nanocrystalline/plane_utils.py' 2021-07-14T11:31:32,715 adding 'asap3/setup/nanocrystalline/quat_utils.py' 2021-07-14T11:31:35,038 adding 'asap3-3.11.8.data/scripts/asap-python' 2021-07-14T11:31:35,133 adding 'asap3-3.11.8.data/scripts/asap-qsub' 2021-07-14T11:31:35,135 adding 'asap3-3.11.8.data/scripts/asap-sbatch' 2021-07-14T11:31:35,142 adding 'asap3-3.11.8.dist-info/LICENSE' 2021-07-14T11:31:35,143 adding 'asap3-3.11.8.dist-info/LICENSE.LESSER' 2021-07-14T11:31:35,144 adding 'asap3-3.11.8.dist-info/METADATA' 2021-07-14T11:31:35,145 adding 'asap3-3.11.8.dist-info/WHEEL' 2021-07-14T11:31:35,146 adding 'asap3-3.11.8.dist-info/top_level.txt' 2021-07-14T11:31:35,148 adding 'asap3-3.11.8.dist-info/RECORD' 2021-07-14T11:31:35,263 removing build/bdist.linux-armv7l/wheel 2021-07-14T11:31:35,442 Building wheel for asap3 (setup.py): finished with status 'done' 2021-07-14T11:31:35,556 Created wheel for asap3: filename=asap3-3.11.8-cp39-cp39-linux_armv7l.whl size=8570932 sha256=848b22dc293ab4a1212857ae4822b3793802bd64adcd625b2c52aec65c5358ea 2021-07-14T11:31:35,557 Stored in directory: /tmp/pip-ephem-wheel-cache-iy57w8tj/wheels/ca/34/5d/2d42c47f16963fdb709e7b3900d28fcfc365fc8072d8872a09 2021-07-14T11:31:35,574 Successfully built asap3 2021-07-14T11:31:35,831 Removed build tracker: '/tmp/pip-req-tracker-te1ln79s'