2021-07-14T11:27:48,679 Created temporary directory: /tmp/pip-ephem-wheel-cache-xiqk4le9 2021-07-14T11:27:48,683 Created temporary directory: /tmp/pip-req-tracker-2u_nge0g 2021-07-14T11:27:48,684 Initialized build tracking at /tmp/pip-req-tracker-2u_nge0g 2021-07-14T11:27:48,684 Created build tracker: /tmp/pip-req-tracker-2u_nge0g 2021-07-14T11:27:48,685 Entered build tracker: /tmp/pip-req-tracker-2u_nge0g 2021-07-14T11:27:48,686 Created temporary directory: /tmp/pip-wheel-bit3ut_e 2021-07-14T11:27:48,732 1 location(s) to search for versions of asap3: 2021-07-14T11:27:48,732 * https://pypi.org/simple/asap3/ 2021-07-14T11:27:48,733 Fetching project page and analyzing links: https://pypi.org/simple/asap3/ 2021-07-14T11:27:48,734 Getting page https://pypi.org/simple/asap3/ 2021-07-14T11:27:48,736 Found index url https://pypi.org/simple 2021-07-14T11:27:48,859 Found link https://files.pythonhosted.org/packages/b3/18/a0fd1f238ed751f8882f815a62354e9e6df3077a9afe218d7754a2fd6a5d/asap3-3.9.6.tar.gz#sha256=9c2895508d6ef7806769ff2bd7d783a895b145543cf906d886192ae0ffc2280d (from https://pypi.org/simple/asap3/), version: 3.9.6 2021-07-14T11:27:48,860 Found link https://files.pythonhosted.org/packages/6d/4b/7623da3d3d4086c524a94def4340bf1e1b4aee1c935420fad6123b20d678/asap3-3.10.0.tar.gz#sha256=4ccb0640ce65acecccd4e871353d6cf94521577507c397623a31e47cf6c624eb (from https://pypi.org/simple/asap3/), version: 3.10.0 2021-07-14T11:27:48,861 Found link https://files.pythonhosted.org/packages/a8/18/3552565db206a682f6c934e8f1291a71095f21b6387d3d2c284c071efe11/asap3-3.10.2.tar.gz#sha256=60ec50c9c50d1b3115edde2ab8f2f42370e08f6eb15c14de0350724d78c47df1 (from https://pypi.org/simple/asap3/), version: 3.10.2 2021-07-14T11:27:48,862 Found link https://files.pythonhosted.org/packages/46/93/a36962deb1049cd6c189fc9944213a7456fc78d7158273a4cf494503e4b0/asap3-3.10.3.tar.gz#sha256=9fabec07296c83fc33c41ac2475e57bd3a2ef688a8364bc3000e70b7195c396e (from https://pypi.org/simple/asap3/), version: 3.10.3 2021-07-14T11:27:48,863 Found link https://files.pythonhosted.org/packages/51/a7/753ffcd46d2da6bb3d07bbe7e2bf320b71e19568b43fc9f3f774cf741f33/asap3-3.10.5.tar.gz#sha256=909682a35b7336bb7deaaa75f697ba26affbff27ad17e3b9fca4a1b3717206c7 (from https://pypi.org/simple/asap3/), version: 3.10.5 2021-07-14T11:27:48,863 Found link https://files.pythonhosted.org/packages/21/ee/fcceabc5e6c11a3398a1039f4ca39c627fafe6176cc6540aedb75f4384f6/asap3-3.10.6.tar.gz#sha256=832ab0e94903efe9ee632db20c56ed605386fc2e62bf863ae3bf81092047ae95 (from https://pypi.org/simple/asap3/), version: 3.10.6 2021-07-14T11:27:48,864 Found link https://files.pythonhosted.org/packages/28/af/109859a068fb8f90b0fa9a594486480b8ae7e9f911593441d8ce82a0f9dd/asap3-3.10.7.tar.gz#sha256=20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773 (from https://pypi.org/simple/asap3/), version: 3.10.7 2021-07-14T11:27:48,865 Found link https://files.pythonhosted.org/packages/2a/66/8dec58eb472f7855d0837b93daa75825a7bc243b773566902d00b043be18/asap3-3.10.8.tar.gz#sha256=a167e89c717cc75c1ff41bb370b9454563c29333e49b7383e668094af547d139 (from https://pypi.org/simple/asap3/), version: 3.10.8 2021-07-14T11:27:48,866 Found link https://files.pythonhosted.org/packages/31/d5/4dea3371c9d83192c450b8905074653276fb33e9f0e20207471cc0025d09/asap3-3.10.10.tar.gz#sha256=58cc70379ff3de727ad2e19882082c40a4780c72ae86e21decd15a8df1e202f0 (from https://pypi.org/simple/asap3/), version: 3.10.10 2021-07-14T11:27:48,867 Found link https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 (from https://pypi.org/simple/asap3/), version: 3.11.3 2021-07-14T11:27:48,867 Found link https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a (from https://pypi.org/simple/asap3/), version: 3.11.5 2021-07-14T11:27:48,868 Found link https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 (from https://pypi.org/simple/asap3/), version: 3.11.6 2021-07-14T11:27:48,869 Found link https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b (from https://pypi.org/simple/asap3/), version: 3.11.8 2021-07-14T11:27:48,869 Found link https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce (from https://pypi.org/simple/asap3/), version: 3.11.9 2021-07-14T11:27:48,870 Found link https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 (from https://pypi.org/simple/asap3/), version: 3.11.10 2021-07-14T11:27:48,871 Found link https://files.pythonhosted.org/packages/3a/52/77063f553b0ded38f99f97c06ee7c81cc9bfeda82b571bdcb25957f80b04/asap3-3.12.1.tar.gz#sha256=6852d7b3f668b8f740f1be7a0b8ead6b831cb1c381b02448e3e9a578d9efb182 (from https://pypi.org/simple/asap3/), version: 3.12.1 2021-07-14T11:27:48,872 Found link https://files.pythonhosted.org/packages/dd/fc/d1953b172e106f00e1cc19c0f830746cb2dec3d1cdeb5ad0ce4347f5a4d9/asap3-3.12.2.tar.gz#sha256=b6c03c790ba4c9f0d231659078c26ce8193fa21314bf2fe4adaa7899d5cd9dbe (from https://pypi.org/simple/asap3/), version: 3.12.2 2021-07-14T11:27:48,872 Found link https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 (from https://pypi.org/simple/asap3/), version: 3.12.3 2021-07-14T11:27:48,873 Found link https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 (from https://pypi.org/simple/asap3/), version: 3.12.7 2021-07-14T11:27:48,875 Found link https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 (from https://pypi.org/simple/asap3/), version: 3.12.8 2021-07-14T11:27:48,876 Skipping link: not a file: https://pypi.org/simple/asap3/ 2021-07-14T11:27:48,921 Given no hashes to check 1 links for project 'asap3': discarding no candidates 2021-07-14T11:27:48,954 Collecting asap3==3.11.9 2021-07-14T11:27:48,957 Created temporary directory: /tmp/pip-unpack-5kzoq4qn 2021-07-14T11:27:49,033 Downloading asap3-3.11.9.tar.gz (801 kB) 2021-07-14T11:27:50,886 Added asap3==3.11.9 from https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce to build tracker '/tmp/pip-req-tracker-2u_nge0g' 2021-07-14T11:27:50,888 Running setup.py (path:/tmp/pip-wheel-bit3ut_e/asap3_3b2573a7fbdf4cd398a651855e6a1f15/setup.py) egg_info for package asap3 2021-07-14T11:27:50,890 Created temporary directory: /tmp/pip-pip-egg-info-tun5vpf_ 2021-07-14T11:27:50,890 Running command python setup.py egg_info 2021-07-14T11:27:53,642 Asap version number: 3.11.9 2021-07-14T11:27:53,643 customize-local.py not found - this is OK. 2021-07-14T11:27:53,643 customize-piwheels37.py not found - this is OK. 2021-07-14T11:27:53,644 Reading customization from customize.py 2021-07-14T11:27:53,644 Recording version info into VersionInfo_autogen 2021-07-14T11:27:53,644 CC = arm-linux-gnueabihf-gcc -pthread 2021-07-14T11:27:53,645 CFLAGS = -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 2021-07-14T11:27:53,645 Identifying source files 2021-07-14T11:27:53,646 Identifying Python submodules 2021-07-14T11:27:53,646 running egg_info 2021-07-14T11:27:53,647 creating /tmp/pip-pip-egg-info-tun5vpf_/asap3.egg-info 2021-07-14T11:27:53,657 writing /tmp/pip-pip-egg-info-tun5vpf_/asap3.egg-info/PKG-INFO 2021-07-14T11:27:53,661 writing dependency_links to /tmp/pip-pip-egg-info-tun5vpf_/asap3.egg-info/dependency_links.txt 2021-07-14T11:27:53,666 writing top-level names to /tmp/pip-pip-egg-info-tun5vpf_/asap3.egg-info/top_level.txt 2021-07-14T11:27:53,668 writing manifest file '/tmp/pip-pip-egg-info-tun5vpf_/asap3.egg-info/SOURCES.txt' 2021-07-14T11:27:54,032 reading manifest file '/tmp/pip-pip-egg-info-tun5vpf_/asap3.egg-info/SOURCES.txt' 2021-07-14T11:27:54,034 reading manifest template 'MANIFEST.in' 2021-07-14T11:27:54,163 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T11:27:54,165 adding license file 'LICENSE' 2021-07-14T11:27:54,166 adding license file 'LICENSE.LESSER' 2021-07-14T11:27:54,191 writing manifest file '/tmp/pip-pip-egg-info-tun5vpf_/asap3.egg-info/SOURCES.txt' 2021-07-14T11:27:54,378 Source in /tmp/pip-wheel-bit3ut_e/asap3_3b2573a7fbdf4cd398a651855e6a1f15 has version 3.11.9, which satisfies requirement asap3==3.11.9 from https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce 2021-07-14T11:27:54,380 Removed asap3==3.11.9 from https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce from build tracker '/tmp/pip-req-tracker-2u_nge0g' 2021-07-14T11:27:54,388 Created temporary directory: /tmp/pip-unpack-tr5dghnz 2021-07-14T11:27:54,390 Building wheels for collected packages: asap3 2021-07-14T11:27:54,397 Created temporary directory: /tmp/pip-wheel-pypztgxo 2021-07-14T11:27:54,397 Building wheel for asap3 (setup.py): started 2021-07-14T11:27:54,398 Destination directory: /tmp/pip-wheel-pypztgxo 2021-07-14T11:27:54,399 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bit3ut_e/asap3_3b2573a7fbdf4cd398a651855e6a1f15/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bit3ut_e/asap3_3b2573a7fbdf4cd398a651855e6a1f15/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pypztgxo 2021-07-14T11:27:57,412 Asap version number: 3.11.9 2021-07-14T11:27:57,413 customize-local.py not found - this is OK. 2021-07-14T11:27:57,413 customize-piwheels37.py not found - this is OK. 2021-07-14T11:27:57,413 Reading customization from customize.py 2021-07-14T11:27:57,452 Identifying source files 2021-07-14T11:27:57,457 Identifying Python submodules 2021-07-14T11:27:57,871 running bdist_wheel 2021-07-14T11:27:57,887 running build 2021-07-14T11:27:57,887 running build_py 2021-07-14T11:27:58,282 creating build 2021-07-14T11:27:58,283 creating build/lib.linux-armv7l-3.9 2021-07-14T11:27:58,285 creating build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,288 copying Python/asap3/testtools.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,292 copying Python/asap3/EMT2011_py.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,297 copying Python/asap3/version.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,308 copying Python/asap3/constraints.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,312 copying Python/asap3/mpi.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,316 copying Python/asap3/memory.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,319 copying Python/asap3/fixepydoc.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,322 copying Python/asap3/EMT2013Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,327 copying Python/asap3/EMT2011Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,331 copying Python/asap3/GuptaParameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,336 copying Python/asap3/timing.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,358 copying Python/asap3/__init__.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T11:27:58,363 creating build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,365 copying Python/asap3/Tools/MaterialProperties.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,369 copying Python/asap3/Tools/niflheim.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,372 copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,375 copying Python/asap3/Tools/Timing.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,388 copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,391 copying Python/asap3/Tools/ElasticConstants.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,395 copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,399 copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,402 copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,405 copying Python/asap3/Tools/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T11:27:58,416 creating build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,426 copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,429 copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,432 copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,437 copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,441 copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,444 copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,448 copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,451 copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,455 copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,459 copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,463 copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T11:27:58,476 creating build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,477 copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,481 copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,486 copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,489 copying Python/asap3/Internal/EMTParameters.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,493 copying Python/asap3/Internal/ListOfElements.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,496 copying Python/asap3/Internal/Threads.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,500 copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,504 copying Python/asap3/Internal/CheckArray.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,508 copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,511 copying Python/asap3/Internal/Builtins.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,515 copying Python/asap3/Internal/checkversion.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,536 copying Python/asap3/Internal/Subject.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,539 copying Python/asap3/Internal/Collector.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,542 copying Python/asap3/Internal/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T11:27:58,546 creating build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T11:27:58,547 copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T11:27:58,551 creating build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:58,553 copying Python/asap3/optimize/optimize.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:58,579 copying Python/asap3/optimize/mdmin.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:58,583 copying Python/asap3/optimize/fire.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:58,587 copying Python/asap3/optimize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T11:27:58,593 creating build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:58,596 copying Python/asap3/setup/dislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:58,610 copying Python/asap3/setup/displacementfield.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:58,614 copying Python/asap3/setup/VelocityDistribution.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:58,618 copying Python/asap3/setup/multidislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:58,623 copying Python/asap3/setup/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T11:27:58,627 creating build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,630 copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,637 copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,642 copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,647 copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,659 copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,664 copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,669 copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,673 copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,677 copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T11:27:58,685 creating build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,696 copying Python/asap3/md/nvtberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,700 copying Python/asap3/md/langevin.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,704 copying Python/asap3/md/npt.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,708 copying Python/asap3/md/verlet_fast.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,712 copying Python/asap3/md/nptberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,715 copying Python/asap3/md/md.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,727 copying Python/asap3/md/verlet.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,731 copying Python/asap3/md/velocitydistribution.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,735 copying Python/asap3/md/__init__.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T11:27:58,740 creating build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:58,742 copying Python/asap3/io/cpu_setup.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:58,746 copying Python/asap3/io/ReadOldFiles.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:58,750 copying Python/asap3/io/bundletrajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:58,755 copying Python/asap3/io/trajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:58,759 copying Python/asap3/io/__init__.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T11:27:58,763 creating build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,765 copying Python/asap3/analysis/localstructure.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,769 copying Python/asap3/analysis/rdf.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,774 copying Python/asap3/analysis/cutcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,778 copying Python/asap3/analysis/findcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,781 copying Python/asap3/analysis/averagepositions.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,786 copying Python/asap3/analysis/particle.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,790 copying Python/asap3/analysis/ptm.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,794 copying Python/asap3/analysis/clusterposition.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,797 copying Python/asap3/analysis/__init__.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T11:27:58,802 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,804 copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,808 copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,812 copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,815 copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,820 copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,824 copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,828 copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,831 copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,835 copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T11:27:58,839 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:27:58,841 copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:27:58,846 copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:27:58,851 copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:27:58,857 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:58,859 copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:58,862 copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:58,866 copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:58,870 copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T11:27:58,875 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:58,877 copying Python/asap3/MonteCarlo/Basin.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:58,880 copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:58,896 copying Python/asap3/MonteCarlo/Start.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:58,900 copying Python/asap3/MonteCarlo/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:58,904 copying Python/asap3/MonteCarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T11:27:58,909 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T11:27:58,910 copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T11:27:58,915 copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T11:27:58,929 copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T11:27:58,933 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T11:27:58,936 copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T11:27:58,940 copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T11:27:58,944 copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T11:27:59,017 running build_ext 2021-07-14T11:27:59,026 building '_asap_p3' extension 2021-07-14T11:27:59,034 creating build/temp.linux-armv7l-3.9 2021-07-14T11:27:59,035 creating build/temp.linux-armv7l-3.9/Basics 2021-07-14T11:27:59,038 creating build/temp.linux-armv7l-3.9/Brenner 2021-07-14T11:27:59,040 creating build/temp.linux-armv7l-3.9/Interface 2021-07-14T11:27:59,042 creating build/temp.linux-armv7l-3.9/PTM 2021-07-14T11:27:59,047 creating build/temp.linux-armv7l-3.9/PTM/qcprot 2021-07-14T11:27:59,049 creating build/temp.linux-armv7l-3.9/PTM/voronoi 2021-07-14T11:27:59,051 creating build/temp.linux-armv7l-3.9/Potentials 2021-07-14T11:27:59,076 creating build/temp.linux-armv7l-3.9/Tools 2021-07-14T11:27:59,077 creating build/temp.linux-armv7l-3.9/VersionInfo_autogen 2021-07-14T11:27:59,078 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/AsapObject.cpp -o build/temp.linux-armv7l-3.9/Basics/AsapObject.o 2021-07-14T11:28:00,915 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Debug.cpp -o build/temp.linux-armv7l-3.9/Basics/Debug.o 2021-07-14T11:28:03,895 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/DynamicAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o 2021-07-14T11:28:08,868 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Exception.cpp -o build/temp.linux-armv7l-3.9/Basics/Exception.o 2021-07-14T11:28:12,587 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImageAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o 2021-07-14T11:28:15,007 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:15,008 from Basics/ImageAtoms.h:31, 2021-07-14T11:28:15,009 from Basics/ImageAtoms.cpp:27: 2021-07-14T11:28:15,009 Basics/ImageAtoms.cpp: In destructor ‘virtual AsapNS::ImageAtoms::~ImageAtoms()’: 2021-07-14T11:28:15,010 Basics/Exception.h:158:5: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 2021-07-14T11:28:15,010 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T11:28:15,010 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:15,011 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T11:28:15,011 52 | ASSERT(refcount == 0); 2021-07-14T11:28:15,012 | ^~~~~~ 2021-07-14T11:28:15,012 Basics/Exception.h:158:5: note: in C++11 destructors default to ‘noexcept’ 2021-07-14T11:28:15,013 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T11:28:15,013 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:15,013 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T11:28:15,014 52 | ASSERT(refcount == 0); 2021-07-14T11:28:15,014 | ^~~~~~ 2021-07-14T11:28:15,015 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T11:28:15,015 Basics/ImageAtoms.cpp:82:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,016 82 | if (pos.capacity() < nTot) 2021-07-14T11:28:15,016 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:28:15,016 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:15,017 from Basics/ImageAtoms.h:31, 2021-07-14T11:28:15,017 from Basics/ImageAtoms.cpp:27: 2021-07-14T11:28:15,018 Basics/ImageAtoms.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,018 84 | ASSERT(allpositions.size() >= nTot); 2021-07-14T11:28:15,019 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:28:15,019 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:15,019 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:15,020 | ^~ 2021-07-14T11:28:15,035 Basics/ImageAtoms.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,036 86 | ASSERT(pos.size() == nTot); 2021-07-14T11:28:15,036 | ~~~~~~~~~~~^~~~~~~ 2021-07-14T11:28:15,037 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:15,037 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:15,037 | ^~ 2021-07-14T11:28:15,038 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T11:28:15,038 Basics/ImageAtoms.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,039 95 | ASSERT(allpositions.size() >= n); 2021-07-14T11:28:15,039 | ~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T11:28:15,040 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:15,040 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:15,040 | ^~ 2021-07-14T11:28:15,041 Basics/ImageAtoms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,041 97 | if (pos.capacity() < n) 2021-07-14T11:28:15,042 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:15,058 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:15,058 from Basics/ImageAtoms.h:31, 2021-07-14T11:28:15,059 from Basics/ImageAtoms.cpp:27: 2021-07-14T11:28:15,059 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::make_images(double)’: 2021-07-14T11:28:15,059 Basics/ImageAtoms.cpp:170:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,060 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); 2021-07-14T11:28:15,060 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:15,061 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:15,061 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:15,062 | ^~ 2021-07-14T11:28:15,066 Basics/ImageAtoms.cpp:221:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,066 221 | if (allpositions.capacity() < nSize) 2021-07-14T11:28:15,067 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:28:15,067 Basics/ImageAtoms.cpp:223:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,068 223 | if (allnumbers.capacity() < nSize) 2021-07-14T11:28:15,068 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:28:15,069 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:15,069 from Basics/ImageAtoms.h:31, 2021-07-14T11:28:15,070 from Basics/ImageAtoms.cpp:27: 2021-07-14T11:28:15,070 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::update_images()’: 2021-07-14T11:28:15,071 Basics/ImageAtoms.cpp:238:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,071 238 | ASSERT(allpositions.size() <= nSize); 2021-07-14T11:28:15,071 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:28:15,072 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:15,072 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:15,073 | ^~ 2021-07-14T11:28:15,073 Basics/ImageAtoms.cpp:241:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:15,074 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); 2021-07-14T11:28:15,074 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:15,075 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:15,075 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:15,075 | ^~ 2021-07-14T11:28:19,783 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImagePotential.cpp -o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o 2021-07-14T11:28:22,217 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::Vec]’: 2021-07-14T11:28:22,217 Basics/ImagePotential.cpp:93:38: required from here 2021-07-14T11:28:22,218 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:22,218 139 | for (int i = 0; i < orig_map.size(); i++) 2021-07-14T11:28:22,218 | ~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:28:22,228 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::SymTensor]’: 2021-07-14T11:28:22,228 Basics/ImagePotential.cpp:118:45: required from here 2021-07-14T11:28:22,228 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:24,872 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Langevin.cpp -o build/temp.linux-armv7l-3.9/Basics/Langevin.o 2021-07-14T11:28:29,342 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Matrix3x3.cpp -o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o 2021-07-14T11:28:31,256 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MolecularDynamics.cpp -o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o 2021-07-14T11:28:33,918 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:33,918 from Basics/MolecularDynamics.h:30, 2021-07-14T11:28:33,918 from Basics/MolecularDynamics.cpp:27: 2021-07-14T11:28:33,919 Basics/MolecularDynamics.cpp: In member function ‘bool AsapNS::MolecularDynamics::CallObservers(PyObject*)’: 2021-07-14T11:28:33,919 Basics/MolecularDynamics.cpp:238:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<_object*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:33,919 238 | ASSERT(n == obs_kwargs.size()); 2021-07-14T11:28:33,920 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:33,920 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:33,921 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:33,921 | ^~ 2021-07-14T11:28:36,271 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MonteCarloAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o 2021-07-14T11:28:41,005 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborCellLocator.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o 2021-07-14T11:28:43,932 Basics/NeighborCellLocator.cpp: In destructor ‘virtual AsapNS::NeighborCellLocator::~NeighborCellLocator()’: 2021-07-14T11:28:43,933 Basics/NeighborCellLocator.cpp:87:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:43,933 87 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T11:28:43,934 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:43,938 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:43,938 from Basics/NeighborCellLocator.h:35, 2021-07-14T11:28:43,939 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T11:28:43,939 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::MakeList()’: 2021-07-14T11:28:43,939 Basics/NeighborCellLocator.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:43,940 128 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T11:28:43,940 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:28:43,941 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:43,941 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:43,941 | ^~ 2021-07-14T11:28:43,960 Basics/NeighborCellLocator.cpp:313:42: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:43,961 313 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) 2021-07-14T11:28:43,961 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:28:43,962 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:43,962 from Basics/NeighborCellLocator.h:35, 2021-07-14T11:28:43,962 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T11:28:43,963 Basics/NeighborCellLocator.cpp:324:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:43,963 324 | ASSERT(cells.size() == nTotalCells[3]); 2021-07-14T11:28:43,963 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:28:43,964 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:43,964 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:43,964 | ^~ 2021-07-14T11:28:43,965 Basics/NeighborCellLocator.cpp:325:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:43,965 325 | for (int i = 0; i < cells.size(); i++) 2021-07-14T11:28:43,966 | ~~^~~~~~~~~~~~~~ 2021-07-14T11:28:43,966 Basics/NeighborCellLocator.cpp:361:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:43,966 361 | for (int i = 0; i < cells.size(); i++) 2021-07-14T11:28:43,966 | ~~^~~~~~~~~~~~~~ 2021-07-14T11:28:44,017 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::MakeNeighboringCellLists()’: 2021-07-14T11:28:44,018 Basics/NeighborCellLocator.cpp:476:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:44,018 476 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T11:28:44,019 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:44,019 Basics/NeighborCellLocator.cpp:479:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:44,019 479 | for (int i = 0; i < cells.size(); i++) 2021-07-14T11:28:44,020 | ~~^~~~~~~~~~~~~~ 2021-07-14T11:28:44,136 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:44,136 from Basics/NeighborCellLocator.h:35, 2021-07-14T11:28:44,136 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T11:28:44,137 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::ScaleAndNormalizePositions()’: 2021-07-14T11:28:44,137 Basics/NeighborCellLocator.cpp:933:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,138 933 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T11:28:44,138 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:28:44,138 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:44,139 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:44,139 | ^~ 2021-07-14T11:28:44,139 Basics/NeighborCellLocator.cpp:940:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,140 940 | if (wrappedPositions.capacity() < spsz) 2021-07-14T11:28:44,140 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:28:44,140 Basics/NeighborCellLocator.cpp:943:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,141 943 | if (offsetPositions.capacity() < spsz) 2021-07-14T11:28:44,141 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:28:44,141 Basics/NeighborCellLocator.cpp:980:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,142 980 | if (wrappedPositions.capacity() < spsz) 2021-07-14T11:28:44,142 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:28:44,143 Basics/NeighborCellLocator.cpp:983:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,143 983 | if (scaledOffsetPositions.capacity() < spsz) 2021-07-14T11:28:44,143 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T11:28:44,164 In file included from Basics/AsapPython.h:44, 2021-07-14T11:28:44,165 from Basics/NeighborCellLocator.h:35, 2021-07-14T11:28:44,165 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T11:28:44,166 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::RenormalizePositions()’: 2021-07-14T11:28:44,166 Basics/NeighborCellLocator.cpp:1105:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,166 1105 | ASSERT(referencePositions.size() == nAtoms); 2021-07-14T11:28:44,167 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:28:44,167 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:44,167 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:44,167 | ^~ 2021-07-14T11:28:44,168 Basics/NeighborCellLocator.cpp:1106:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,168 1106 | ASSERT(offsetPositions.size() == nAllAtoms); 2021-07-14T11:28:44,168 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:28:44,169 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:44,169 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:44,169 | ^~ 2021-07-14T11:28:44,171 Basics/NeighborCellLocator.cpp:1123:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,171 1123 | ASSERT(wrappedPositions.size() == nAllAtoms); 2021-07-14T11:28:44,172 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:28:44,172 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:28:44,172 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:28:44,173 | ^~ 2021-07-14T11:28:44,197 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::print_info(int)’: 2021-07-14T11:28:44,197 Basics/NeighborCellLocator.cpp:1254:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,198 1254 | if (referencePositions.size() > n) 2021-07-14T11:28:44,198 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:44,200 Basics/NeighborCellLocator.cpp:1256:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,200 1256 | if (wrappedPositions.size() > n) 2021-07-14T11:28:44,200 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:44,202 Basics/NeighborCellLocator.cpp:1258:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,202 1258 | if (scaledPositions.size() > n) 2021-07-14T11:28:44,202 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:44,204 Basics/NeighborCellLocator.cpp:1260:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,205 1260 | if (offsetPositions.size() > n) 2021-07-14T11:28:44,205 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:44,206 Basics/NeighborCellLocator.cpp:1262:36: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,206 1262 | if (scaledOffsetPositions.size() > n) 2021-07-14T11:28:44,207 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T11:28:44,217 Basics/NeighborCellLocator.cpp: In member function ‘virtual long int AsapNS::NeighborCellLocator::PrintMemory() const’: 2021-07-14T11:28:44,217 Basics/NeighborCellLocator.cpp:1294:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:44,217 1294 | if (i->size() > longest) 2021-07-14T11:28:44,218 | ~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:28:55,931 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList.o 2021-07-14T11:28:58,979 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::MakeList()’: 2021-07-14T11:28:58,979 Basics/NeighborList.cpp:126:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:58,979 126 | if (nAllAtoms != nbList.size()) 2021-07-14T11:28:58,980 | ~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:28:58,980 Basics/NeighborList.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:58,981 128 | if (fulllists && (nAllAtoms != complNbList.size())) 2021-07-14T11:28:58,981 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:59,008 Basics/NeighborList.cpp:200:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:59,008 200 | if (nbList[i].capacity() < reservedLength) 2021-07-14T11:28:59,009 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:28:59,009 Basics/NeighborList.cpp:210:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:28:59,009 210 | if (complNbList[i].capacity() < reservedLength) 2021-07-14T11:28:59,010 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:28:59,020 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T11:28:59,021 Basics/NeighborList.cpp:357:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:59,021 357 | if (size < nbList[a1].size()) 2021-07-14T11:28:59,022 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:59,047 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetFullNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T11:28:59,048 Basics/NeighborList.cpp:477:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:59,048 477 | if (size < nbList[a1].size() + complNbList[a1].size()) 2021-07-14T11:28:59,049 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:59,162 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::RemakeLists(const std::set&, std::set&)’: 2021-07-14T11:28:59,163 Basics/NeighborList.cpp:624:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T11:28:59,163 624 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != complNbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T11:28:59,168 Basics/NeighborList.cpp:654:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T11:28:59,168 654 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != nbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T11:28:59,220 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::CheckFullListConsistency(std::string, bool)’: 2021-07-14T11:28:59,220 Basics/NeighborList.cpp:756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:28:59,221 756 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T11:28:59,221 Basics/NeighborList.cpp:758:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:28:59,221 758 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T11:28:59,242 Basics/NeighborList.cpp:795:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:28:59,242 795 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T11:28:59,243 Basics/NeighborList.cpp:797:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:28:59,243 797 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T11:28:59,262 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::print_info(int)’: 2021-07-14T11:28:59,263 Basics/NeighborList.cpp:834:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:59,263 834 | for (int i = 0; i < nbList[n].size(); i++) 2021-07-14T11:28:59,263 | ~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:59,266 Basics/NeighborList.cpp:840:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:59,266 840 | for (int i = 0; i < complNbList[n].size(); i++) 2021-07-14T11:28:59,267 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:28:59,283 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::update_translationvectors()’: 2021-07-14T11:28:59,284 Basics/NeighborList.cpp:910:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:28:59,284 910 | for (int i = 0; i < translationTable.size(); i++) 2021-07-14T11:28:59,284 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:02,437 In file included from /usr/include/c++/10/vector:72, 2021-07-14T11:29:02,437 from Basics/AtomsBasis.h:33, 2021-07-14T11:29:02,438 from Basics/Atoms.h:36, 2021-07-14T11:29:02,438 from Basics/NeighborLocator.h:41, 2021-07-14T11:29:02,438 from Basics/NeighborList.h:37, 2021-07-14T11:29:02,439 from Basics/NeighborList.cpp:29: 2021-07-14T11:29:02,439 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T11:29:02,439 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:02,440 721 | vector<_Tp, _Alloc>:: 2021-07-14T11:29:02,440 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:02,440 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:02,440 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:02,588 In file included from /usr/include/c++/10/vector:67, 2021-07-14T11:29:02,588 from Basics/AtomsBasis.h:33, 2021-07-14T11:29:02,588 from Basics/Atoms.h:36, 2021-07-14T11:29:02,588 from Basics/NeighborLocator.h:41, 2021-07-14T11:29:02,589 from Basics/NeighborList.h:37, 2021-07-14T11:29:02,589 from Basics/NeighborList.cpp:29: 2021-07-14T11:29:02,589 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T11:29:02,589 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:02,590 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:29:02,590 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:02,590 1666 | std::__iterator_category(__first)); 2021-07-14T11:29:02,590 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:02,591 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:02,636 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T11:29:02,636 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:02,637 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:29:02,637 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:02,638 1666 | std::__iterator_category(__first)); 2021-07-14T11:29:02,638 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:02,638 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:07,515 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList2013.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o 2021-07-14T11:29:10,739 Basics/NeighborList2013.cpp: In member function ‘virtual int AsapNS::NeighborList2013::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T11:29:10,739 Basics/NeighborList2013.cpp:33:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:29:10,740 33 | if (size < nbList[a1].size()) 2021-07-14T11:29:10,740 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:11,948 In file included from /usr/include/c++/10/vector:72, 2021-07-14T11:29:11,949 from Basics/AtomsBasis.h:33, 2021-07-14T11:29:11,949 from Basics/Atoms.h:36, 2021-07-14T11:29:11,949 from Basics/NeighborLocator.h:41, 2021-07-14T11:29:11,950 from Basics/NeighborList.h:37, 2021-07-14T11:29:11,950 from Basics/NeighborList2013.h:11, 2021-07-14T11:29:11,950 from Basics/NeighborList2013.cpp:8: 2021-07-14T11:29:11,951 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T11:29:11,951 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:11,951 721 | vector<_Tp, _Alloc>:: 2021-07-14T11:29:11,951 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:11,952 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:11,952 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:12,199 In file included from /usr/include/c++/10/vector:67, 2021-07-14T11:29:12,199 from Basics/AtomsBasis.h:33, 2021-07-14T11:29:12,200 from Basics/Atoms.h:36, 2021-07-14T11:29:12,200 from Basics/NeighborLocator.h:41, 2021-07-14T11:29:12,200 from Basics/NeighborList.h:37, 2021-07-14T11:29:12,201 from Basics/NeighborList2013.h:11, 2021-07-14T11:29:12,201 from Basics/NeighborList2013.cpp:8: 2021-07-14T11:29:12,201 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T11:29:12,202 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:12,202 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:29:12,202 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:12,203 1666 | std::__iterator_category(__first)); 2021-07-14T11:29:12,203 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:12,203 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:12,242 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T11:29:12,242 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:12,243 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:29:12,243 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:12,243 1666 | std::__iterator_category(__first)); 2021-07-14T11:29:12,244 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:12,244 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:12,999 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NormalAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o 2021-07-14T11:29:15,534 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_numbers(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T11:29:15,535 Basics/NormalAtoms.cpp:426:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:15,535 426 | if (numbers.size() != nAtoms+nGhosts) 2021-07-14T11:29:15,536 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:29:15,541 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_positions(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T11:29:15,541 Basics/NormalAtoms.cpp:471:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:15,542 471 | bool pos_resized = (positions.size() != nAtoms+nGhosts); 2021-07-14T11:29:15,542 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:29:15,547 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:15,547 from Basics/NormalAtoms.cpp:27: 2021-07-14T11:29:15,548 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T11:29:15,548 Basics/NormalAtoms.cpp:529:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:15,549 529 | ASSERT(positions.size() == nAtoms + nGhosts); 2021-07-14T11:29:15,549 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:15,549 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:15,550 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:15,550 | ^~ 2021-07-14T11:29:15,550 Basics/NormalAtoms.cpp:530:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:15,551 530 | if (pos.capacity() < nAtoms + nGhosts) 2021-07-14T11:29:15,551 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:15,556 Basics/NormalAtoms.cpp:536:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T11:29:15,556 536 | if (pos.capacity() < nAtoms) 2021-07-14T11:29:15,556 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:29:15,557 In file included from Basics/AsapPython.h:44, 2021-07-14T11:29:15,557 from Basics/NormalAtoms.cpp:27: 2021-07-14T11:29:15,557 Basics/NormalAtoms.cpp:539:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T11:29:15,558 539 | ASSERT(pos.size() == nAtoms); 2021-07-14T11:29:15,558 | ~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:29:15,558 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:15,559 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:15,559 | ^~ 2021-07-14T11:29:15,560 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T11:29:15,560 Basics/NormalAtoms.cpp:551:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:15,560 551 | ASSERT(positions.size() >= n); 2021-07-14T11:29:15,561 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T11:29:15,561 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:29:15,561 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:29:15,562 | ^~ 2021-07-14T11:29:15,562 Basics/NormalAtoms.cpp:553:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:29:15,562 553 | if (pos.capacity() < n) 2021-07-14T11:29:15,563 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T11:29:18,255 In file included from /usr/include/c++/10/vector:72, 2021-07-14T11:29:18,255 from Basics/AtomsBasis.h:33, 2021-07-14T11:29:18,255 from Basics/NormalAtoms.h:33, 2021-07-14T11:29:18,256 from Basics/NormalAtoms.cpp:29: 2021-07-14T11:29:18,256 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T11:29:18,257 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:18,257 721 | vector<_Tp, _Alloc>:: 2021-07-14T11:29:18,258 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:18,258 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:18,258 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:20,183 In file included from /usr/include/c++/10/vector:67, 2021-07-14T11:29:20,183 from Basics/AtomsBasis.h:33, 2021-07-14T11:29:20,184 from Basics/NormalAtoms.h:33, 2021-07-14T11:29:20,184 from Basics/NormalAtoms.cpp:29: 2021-07-14T11:29:20,184 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T11:29:20,185 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:20,185 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:29:20,185 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:20,186 1666 | std::__iterator_category(__first)); 2021-07-14T11:29:20,186 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:20,186 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:20,187 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:29:20,187 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T11:29:20,187 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:20,188 1666 | std::__iterator_category(__first)); 2021-07-14T11:29:20,188 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:29:20,188 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:29:22,082 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/RandomNumbers.cpp -o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o 2021-07-14T11:29:25,712 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Timing.cpp -o build/temp.linux-armv7l-3.9/Basics/Timing.o 2021-07-14T11:29:28,830 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Vec.cpp -o build/temp.linux-armv7l-3.9/Basics/Vec.o 2021-07-14T11:29:31,105 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/VelocityVerlet.cpp -o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o 2021-07-14T11:29:35,651 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/BrennerPotential.cpp -o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o 2021-07-14T11:29:41,402 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/bcuint.cpp -o build/temp.linux-armv7l-3.9/Brenner/bcuint.o 2021-07-14T11:29:45,752 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/caguts.cpp -o build/temp.linux-armv7l-3.9/Brenner/caguts.o 2021-07-14T11:29:51,340 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/expand.cpp -o build/temp.linux-armv7l-3.9/Brenner/expand.o 2021-07-14T11:29:53,181 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/inter2d_iv.cpp -o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o 2021-07-14T11:29:53,355 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/mtable.cpp -o build/temp.linux-armv7l-3.9/Brenner/mtable.o 2021-07-14T11:29:58,381 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/pibond.cpp -o build/temp.linux-armv7l-3.9/Brenner/pibond.o 2021-07-14T11:30:06,825 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radic.cpp -o build/temp.linux-armv7l-3.9/Brenner/radic.o 2021-07-14T11:30:11,036 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radicdata.cpp -o build/temp.linux-armv7l-3.9/Brenner/radicdata.o 2021-07-14T11:30:11,675 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/sili_germ.cpp -o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o 2021-07-14T11:30:16,815 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/spgch.cpp -o build/temp.linux-armv7l-3.9/Brenner/spgch.o 2021-07-14T11:30:20,271 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/AsapSerial.cpp -o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o 2021-07-14T11:30:23,322 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/DynamicsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o 2021-07-14T11:30:26,101 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:26,101 from Interface/DynamicsInterface.h:29, 2021-07-14T11:30:26,101 from Interface/DynamicsInterface.cpp:26: 2021-07-14T11:30:26,102 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:30:26,102 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:26,102 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:30:26,103 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:26,103 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:26,103 | ^~ 2021-07-14T11:30:26,107 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:30:26,107 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:26,107 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:30:26,107 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:26,108 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:26,108 | ^~ 2021-07-14T11:30:26,120 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:30:26,120 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:26,121 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:30:26,121 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:26,121 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:26,122 | ^~ 2021-07-14T11:30:26,125 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:30:26,125 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:26,126 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:30:26,126 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:26,126 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:26,127 | ^~ 2021-07-14T11:30:26,142 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:30:26,143 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:26,143 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:30:26,143 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:26,144 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:26,144 | ^~ 2021-07-14T11:30:26,152 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_VelocityVerletInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:26,153 Interface/DynamicsInterface.cpp:78:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,153 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T11:30:26,153 | ^~~~~~~ 2021-07-14T11:30:26,154 Interface/DynamicsInterface.cpp:78:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,154 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T11:30:26,154 | ^~~~~~ 2021-07-14T11:30:26,155 Interface/DynamicsInterface.cpp:78:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,155 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T11:30:26,156 | ^~~~~~~~~~ 2021-07-14T11:30:26,160 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_LangevinInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:26,160 Interface/DynamicsInterface.cpp:116:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,160 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:30:26,161 | ^~~~~~~ 2021-07-14T11:30:26,165 Interface/DynamicsInterface.cpp:116:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,165 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:30:26,166 | ^~~~~~ 2021-07-14T11:30:26,166 Interface/DynamicsInterface.cpp:116:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,167 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:30:26,167 | ^~~~~~~~~~ 2021-07-14T11:30:26,171 Interface/DynamicsInterface.cpp:116:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,171 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:30:26,172 | ^~~~~~~ 2021-07-14T11:30:26,172 Interface/DynamicsInterface.cpp:116:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,173 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:30:26,173 | ^~~~~~~ 2021-07-14T11:30:26,173 Interface/DynamicsInterface.cpp:116:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,174 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:30:26,174 | ^~~~ 2021-07-14T11:30:26,174 Interface/DynamicsInterface.cpp:116:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,174 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:30:26,175 | ^~~~ 2021-07-14T11:30:26,175 Interface/DynamicsInterface.cpp:116:87: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,175 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:30:26,176 | ^~~~~~~ 2021-07-14T11:30:26,185 Interface/DynamicsInterface.cpp:116:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,186 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T11:30:26,186 | ^~~~~~ 2021-07-14T11:30:26,186 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DynamicsRun(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:26,187 Interface/DynamicsInterface.cpp:162:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,187 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T11:30:26,187 | ^~~~~~~ 2021-07-14T11:30:26,188 Interface/DynamicsInterface.cpp:162:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,188 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T11:30:26,188 | ^~~~~~~~~~~ 2021-07-14T11:30:26,189 Interface/DynamicsInterface.cpp:162:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,189 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T11:30:26,189 | ^~~~~ 2021-07-14T11:30:26,189 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetScalarConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:26,190 Interface/DynamicsInterface.cpp:190:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,190 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,190 | ^~~~~~ 2021-07-14T11:30:26,190 Interface/DynamicsInterface.cpp:190:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,190 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,191 | ^~~~ 2021-07-14T11:30:26,191 Interface/DynamicsInterface.cpp:190:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,191 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,191 | ^~~~ 2021-07-14T11:30:26,192 Interface/DynamicsInterface.cpp:190:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,192 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,192 | ^~~~~~~ 2021-07-14T11:30:26,193 Interface/DynamicsInterface.cpp:190:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,193 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,193 | ^~~~~~ 2021-07-14T11:30:26,193 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetVectorConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:26,194 Interface/DynamicsInterface.cpp:214:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,194 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,194 | ^~~~~~ 2021-07-14T11:30:26,195 Interface/DynamicsInterface.cpp:214:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,195 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,195 | ^~~~ 2021-07-14T11:30:26,196 Interface/DynamicsInterface.cpp:214:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,196 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,196 | ^~~~ 2021-07-14T11:30:26,196 Interface/DynamicsInterface.cpp:214:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,196 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,196 | ^~~~~~~ 2021-07-14T11:30:26,197 Interface/DynamicsInterface.cpp:214:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,197 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T11:30:26,197 | ^~~~~~ 2021-07-14T11:30:26,197 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvGetRandom(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:26,197 Interface/DynamicsInterface.cpp:251:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:26,197 251 | static char *kwlist[] = {"gaussian", NULL}; 2021-07-14T11:30:26,198 | ^~~~~~~~~~ 2021-07-14T11:30:27,235 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o 2021-07-14T11:30:29,461 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:29,461 from Interface/EMTParameterProviderInterface.cpp:28: 2021-07-14T11:30:29,461 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:30:29,462 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:29,462 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:30:29,462 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:29,463 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:29,463 | ^~ 2021-07-14T11:30:29,479 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:30:29,480 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:29,480 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:30:29,481 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:29,481 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:29,482 | ^~ 2021-07-14T11:30:29,494 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:30:29,494 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:29,495 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:30:29,495 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:29,495 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:29,496 | ^~ 2021-07-14T11:30:29,511 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:30:29,511 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:29,512 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:30:29,512 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:29,512 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:29,513 | ^~ 2021-07-14T11:30:29,529 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:30:29,529 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:29,529 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:30:29,530 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:29,530 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:29,530 | ^~ 2021-07-14T11:30:30,208 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ExceptionInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o 2021-07-14T11:30:32,873 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/NeighborLocatorInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o 2021-07-14T11:30:35,572 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:35,572 from Interface/NeighborLocatorInterface.cpp:27: 2021-07-14T11:30:35,573 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:30:35,573 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:35,573 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:30:35,573 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:35,574 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:35,574 | ^~ 2021-07-14T11:30:35,598 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:30:35,598 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:35,598 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:30:35,599 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:35,599 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:35,599 | ^~ 2021-07-14T11:30:35,611 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:30:35,611 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:35,611 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:30:35,612 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:35,612 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:35,612 | ^~ 2021-07-14T11:30:35,649 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:30:35,649 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:35,649 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:30:35,650 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:35,650 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:35,650 | ^~ 2021-07-14T11:30:35,664 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:30:35,665 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:35,665 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:30:35,665 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:35,666 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:35,666 | ^~ 2021-07-14T11:30:36,084 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborList_Py(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:36,085 Interface/NeighborLocatorInterface.cpp:166:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:36,085 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T11:30:36,086 | ^~~~~~ 2021-07-14T11:30:36,086 Interface/NeighborLocatorInterface.cpp:166:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:36,086 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T11:30:36,087 | ^~~~~~~ 2021-07-14T11:30:36,087 Interface/NeighborLocatorInterface.cpp:166:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:36,087 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T11:30:36,088 | ^~~~~~~~~~~~~ 2021-07-14T11:30:36,088 Interface/NeighborLocatorInterface.cpp:166:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:36,088 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T11:30:36,089 | ^~~~~~ 2021-07-14T11:30:36,089 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborCellLocator_Serial(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:36,089 Interface/NeighborLocatorInterface.cpp:218:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:36,090 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:30:36,090 | ^~~~~~ 2021-07-14T11:30:36,090 Interface/NeighborLocatorInterface.cpp:218:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:36,091 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:30:36,091 | ^~~~~~~ 2021-07-14T11:30:36,091 Interface/NeighborLocatorInterface.cpp:218:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:36,092 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:30:36,092 | ^~~~~~~~~~~~~ 2021-07-14T11:30:36,137 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNB(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:36,138 Interface/NeighborLocatorInterface.cpp:395:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:36,138 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T11:30:36,138 | ^~~ 2021-07-14T11:30:36,139 Interface/NeighborLocatorInterface.cpp:395:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:36,139 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T11:30:36,139 | ^~~~~~ 2021-07-14T11:30:39,468 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/OpenMPInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o 2021-07-14T11:30:41,271 Interface/OpenMPInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_set_num_threads(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:41,271 Interface/OpenMPInterface.cpp:82:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:41,271 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T11:30:41,272 | ^~~ 2021-07-14T11:30:41,272 Interface/OpenMPInterface.cpp:82:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:41,273 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T11:30:41,273 | ^~~~~~~~~~~~ 2021-07-14T11:30:41,660 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PTMInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o 2021-07-14T11:30:44,304 Interface/PTMInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_PTMall(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:44,304 Interface/PTMInterface.cpp:99:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:44,305 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T11:30:44,305 | ^~~~~~~ 2021-07-14T11:30:44,305 Interface/PTMInterface.cpp:99:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:44,306 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T11:30:44,306 | ^~~~~~~~ 2021-07-14T11:30:44,306 Interface/PTMInterface.cpp:99:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:44,307 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T11:30:44,307 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:44,308 Interface/PTMInterface.cpp:100:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:44,308 100 | "calculate_strains", "quick", 2021-07-14T11:30:44,308 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:44,309 Interface/PTMInterface.cpp:100:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:44,309 100 | "calculate_strains", "quick", 2021-07-14T11:30:44,310 | ^~~~~~~ 2021-07-14T11:30:44,310 Interface/PTMInterface.cpp:101:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:44,311 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T11:30:44,311 | ^~~~~~~~~~~~~~~ 2021-07-14T11:30:44,311 Interface/PTMInterface.cpp:101:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:44,312 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T11:30:44,312 | ^~~~~~~~~~~~~~~~~ 2021-07-14T11:30:44,348 In file included from /usr/include/python3.9/Python.h:61, 2021-07-14T11:30:44,348 from Basics/AsapPython.h:38, 2021-07-14T11:30:44,349 from Interface/PTMInterface.h:30, 2021-07-14T11:30:44,349 from Interface/PTMInterface.cpp:1: 2021-07-14T11:30:44,350 Interface/PTMInterface.cpp:303:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:30:44,350 303 | assert(m < indices.size()); 2021-07-14T11:30:44,350 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T11:30:44,351 Interface/PTMInterface.cpp:305:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:30:44,352 305 | assert(idx >= 0 && idx < indices.size()); 2021-07-14T11:30:44,352 | ~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:30:44,750 Interface/PTMInterface.cpp: At global scope: 2021-07-14T11:30:44,751 Interface/PTMInterface.cpp:11:18: warning: ‘PyObject* error(PyObject*, char*)’ defined but not used [-Wunused-function] 2021-07-14T11:30:44,751 11 | static PyObject* error(PyObject* type, char* msg) 2021-07-14T11:30:44,751 | ^~~~~ 2021-07-14T11:30:47,635 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PotentialInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o 2021-07-14T11:30:50,094 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:50,095 from Interface/PotentialInterface.cpp:29: 2021-07-14T11:30:50,095 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:30:50,096 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:50,096 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:30:50,096 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:50,097 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:50,097 | ^~ 2021-07-14T11:30:50,109 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:30:50,110 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:50,110 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:30:50,111 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:50,111 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:50,111 | ^~ 2021-07-14T11:30:50,122 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:30:50,122 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:50,123 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:30:50,123 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:50,124 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:50,124 | ^~ 2021-07-14T11:30:50,137 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:30:50,138 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:50,138 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:30:50,138 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:50,139 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:50,139 | ^~ 2021-07-14T11:30:50,171 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:30:50,171 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:50,172 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:30:50,172 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:50,172 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:50,173 | ^~ 2021-07-14T11:30:50,620 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,621 Interface/PotentialInterface.cpp:201:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,621 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T11:30:50,621 | ^~~~~~ 2021-07-14T11:30:50,622 Interface/PotentialInterface.cpp:201:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,622 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T11:30:50,623 | ^~~~~~~~~ 2021-07-14T11:30:50,624 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMT2013Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,624 Interface/PotentialInterface.cpp:234:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,625 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T11:30:50,625 | ^~~~~~~~~~~~ 2021-07-14T11:30:50,626 Interface/PotentialInterface.cpp:234:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,626 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T11:30:50,626 | ^~~~~~~~~~~~~~~~~ 2021-07-14T11:30:50,627 Interface/PotentialInterface.cpp:234:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,627 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T11:30:50,627 | ^~~~~~~~~ 2021-07-14T11:30:50,628 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MonteCarloEMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,628 Interface/PotentialInterface.cpp:270:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,628 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T11:30:50,629 | ^~~~~~ 2021-07-14T11:30:50,629 Interface/PotentialInterface.cpp:270:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,629 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T11:30:50,629 | ^~~~~~~~~ 2021-07-14T11:30:50,630 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RGLInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,630 Interface/PotentialInterface.cpp:291:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,631 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:30:50,631 | ^~~~~~~~~~ 2021-07-14T11:30:50,631 Interface/PotentialInterface.cpp:291:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,632 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:30:50,632 | ^~~ 2021-07-14T11:30:50,633 Interface/PotentialInterface.cpp:291:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,633 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:30:50,633 | ^~~ 2021-07-14T11:30:50,634 Interface/PotentialInterface.cpp:291:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,634 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:30:50,634 | ^~~ 2021-07-14T11:30:50,634 Interface/PotentialInterface.cpp:291:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,635 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:30:50,635 | ^~~~~~ 2021-07-14T11:30:50,645 Interface/PotentialInterface.cpp:291:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,646 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T11:30:50,646 | ^~~~ 2021-07-14T11:30:50,646 Interface/PotentialInterface.cpp:292:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,647 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:30:50,647 | ^~~~ 2021-07-14T11:30:50,647 Interface/PotentialInterface.cpp:292:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,648 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:30:50,648 | ^~~~ 2021-07-14T11:30:50,648 Interface/PotentialInterface.cpp:292:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,649 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:30:50,649 | ^~~~ 2021-07-14T11:30:50,649 Interface/PotentialInterface.cpp:292:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,650 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:30:50,650 | ^~~~ 2021-07-14T11:30:50,650 Interface/PotentialInterface.cpp:292:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,651 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:30:50,651 | ^~~~ 2021-07-14T11:30:50,652 Interface/PotentialInterface.cpp:292:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,652 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T11:30:50,652 | ^~~~ 2021-07-14T11:30:50,653 Interface/PotentialInterface.cpp:293:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,653 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T11:30:50,653 | ^~~~~ 2021-07-14T11:30:50,654 Interface/PotentialInterface.cpp:293:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,654 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T11:30:50,654 | ^~~~~ 2021-07-14T11:30:50,655 Interface/PotentialInterface.cpp:293:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,655 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T11:30:50,665 | ^~~~~~~~~ 2021-07-14T11:30:50,666 Interface/PotentialInterface.cpp: In function ‘int PyAsap_LennardJonesInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,666 Interface/PotentialInterface.cpp:355:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,667 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T11:30:50,667 | ^~~~~~~~~~~~~ 2021-07-14T11:30:50,667 Interface/PotentialInterface.cpp:355:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,668 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T11:30:50,668 | ^~~~~~~~~~ 2021-07-14T11:30:50,668 Interface/PotentialInterface.cpp:355:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,669 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T11:30:50,669 | ^~~~~~~~~ 2021-07-14T11:30:50,670 Interface/PotentialInterface.cpp:355:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,670 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T11:30:50,670 | ^~~~~~~ 2021-07-14T11:30:50,671 Interface/PotentialInterface.cpp:356:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,671 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T11:30:50,672 | ^~~~~~~~ 2021-07-14T11:30:50,672 Interface/PotentialInterface.cpp:356:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,672 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T11:30:50,673 | ^~~~~~ 2021-07-14T11:30:50,673 Interface/PotentialInterface.cpp:356:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,674 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T11:30:50,674 | ^~~~~~~~~~ 2021-07-14T11:30:50,674 Interface/PotentialInterface.cpp:356:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,675 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T11:30:50,675 | ^~~~~~~~~ 2021-07-14T11:30:50,686 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RahmanStillingerLembergInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,686 Interface/PotentialInterface.cpp:394:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,686 394 | static char *kwlist[] = {"numElements", 2021-07-14T11:30:50,687 | ^~~~~~~~~~~~~ 2021-07-14T11:30:50,687 Interface/PotentialInterface.cpp:395:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,687 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:30:50,688 | ^~~~ 2021-07-14T11:30:50,688 Interface/PotentialInterface.cpp:395:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,688 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:30:50,689 | ^~~~ 2021-07-14T11:30:50,689 Interface/PotentialInterface.cpp:395:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,690 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:30:50,690 | ^~~ 2021-07-14T11:30:50,690 Interface/PotentialInterface.cpp:395:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,691 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:30:50,691 | ^~~~ 2021-07-14T11:30:50,692 Interface/PotentialInterface.cpp:395:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,692 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:30:50,693 | ^~~~ 2021-07-14T11:30:50,693 Interface/PotentialInterface.cpp:395:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,693 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T11:30:50,694 | ^~~~ 2021-07-14T11:30:50,694 Interface/PotentialInterface.cpp:396:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,694 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:30:50,694 | ^~~~ 2021-07-14T11:30:50,695 Interface/PotentialInterface.cpp:396:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,705 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:30:50,706 | ^~~~ 2021-07-14T11:30:50,706 Interface/PotentialInterface.cpp:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,707 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:30:50,707 | ^~~~ 2021-07-14T11:30:50,707 Interface/PotentialInterface.cpp:396:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,708 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:30:50,708 | ^~~~ 2021-07-14T11:30:50,708 Interface/PotentialInterface.cpp:396:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,709 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:30:50,709 | ^~~~ 2021-07-14T11:30:50,710 Interface/PotentialInterface.cpp:396:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,710 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T11:30:50,710 | ^~~~ 2021-07-14T11:30:50,711 Interface/PotentialInterface.cpp:397:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,711 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T11:30:50,711 | ^~~~~~~~~~ 2021-07-14T11:30:50,712 Interface/PotentialInterface.cpp:397:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,712 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T11:30:50,713 | ^~~~~~~~ 2021-07-14T11:30:50,713 Interface/PotentialInterface.cpp:397:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,713 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T11:30:50,713 | ^~~~~~ 2021-07-14T11:30:50,714 Interface/PotentialInterface.cpp:397:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,714 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T11:30:50,714 | ^~~~~~~~~ 2021-07-14T11:30:50,715 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterfaceInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,715 Interface/PotentialInterface.cpp:500:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,725 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,726 | ^~~ 2021-07-14T11:30:50,726 Interface/PotentialInterface.cpp:500:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,726 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,727 | ^~~ 2021-07-14T11:30:50,727 Interface/PotentialInterface.cpp:500:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,727 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,728 | ^~~ 2021-07-14T11:30:50,728 Interface/PotentialInterface.cpp:500:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,728 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,728 | ^~~~ 2021-07-14T11:30:50,729 Interface/PotentialInterface.cpp:500:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,729 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,729 | ^~~~ 2021-07-14T11:30:50,730 Interface/PotentialInterface.cpp:500:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,730 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,730 | ^~~~~~~~~ 2021-07-14T11:30:50,731 Interface/PotentialInterface.cpp:501:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,731 501 | "q", "kappa", 2021-07-14T11:30:50,731 | ^~~ 2021-07-14T11:30:50,732 Interface/PotentialInterface.cpp:501:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,732 501 | "q", "kappa", 2021-07-14T11:30:50,732 | ^~~~~~~ 2021-07-14T11:30:50,733 Interface/PotentialInterface.cpp:502:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,733 502 | "D", "alpha", "R0", 2021-07-14T11:30:50,733 | ^~~ 2021-07-14T11:30:50,734 Interface/PotentialInterface.cpp:502:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,734 502 | "D", "alpha", "R0", 2021-07-14T11:30:50,735 | ^~~~~~~ 2021-07-14T11:30:50,735 Interface/PotentialInterface.cpp:502:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,746 502 | "D", "alpha", "R0", 2021-07-14T11:30:50,746 | ^~~~ 2021-07-14T11:30:50,747 Interface/PotentialInterface.cpp:503:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,747 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:30:50,748 | ^~~ 2021-07-14T11:30:50,748 Interface/PotentialInterface.cpp:503:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,748 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:30:50,749 | ^~~ 2021-07-14T11:30:50,749 Interface/PotentialInterface.cpp:503:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,750 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:30:50,750 | ^~~~ 2021-07-14T11:30:50,750 Interface/PotentialInterface.cpp:503:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,751 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:30:50,751 | ^~~~~~~~~~~ 2021-07-14T11:30:50,752 Interface/PotentialInterface.cpp:504:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,752 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T11:30:50,753 | ^~~~~~ 2021-07-14T11:30:50,753 Interface/PotentialInterface.cpp:504:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,753 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T11:30:50,754 | ^~~~~~~ 2021-07-14T11:30:50,754 Interface/PotentialInterface.cpp:504:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,755 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T11:30:50,755 | ^~~~~~~~~~~~~~~ 2021-07-14T11:30:50,766 Interface/PotentialInterface.cpp:504:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,766 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T11:30:50,766 | ^~~~~~~~~ 2021-07-14T11:30:50,767 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterface2Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,767 Interface/PotentialInterface.cpp:565:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,767 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,768 | ^~~ 2021-07-14T11:30:50,768 Interface/PotentialInterface.cpp:565:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,768 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,769 | ^~~ 2021-07-14T11:30:50,769 Interface/PotentialInterface.cpp:565:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,769 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,770 | ^~~ 2021-07-14T11:30:50,770 Interface/PotentialInterface.cpp:565:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,770 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,771 | ^~~~ 2021-07-14T11:30:50,771 Interface/PotentialInterface.cpp:565:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,771 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,772 | ^~~~ 2021-07-14T11:30:50,772 Interface/PotentialInterface.cpp:565:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,773 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T11:30:50,773 | ^~~~~~~~~ 2021-07-14T11:30:50,773 Interface/PotentialInterface.cpp:566:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,774 566 | "q", "kappa", 2021-07-14T11:30:50,774 | ^~~ 2021-07-14T11:30:50,775 Interface/PotentialInterface.cpp:566:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,785 566 | "q", "kappa", 2021-07-14T11:30:50,786 | ^~~~~~~ 2021-07-14T11:30:50,786 Interface/PotentialInterface.cpp:567:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,787 567 | "D", "alpha", "R0", 2021-07-14T11:30:50,787 | ^~~ 2021-07-14T11:30:50,787 Interface/PotentialInterface.cpp:567:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,788 567 | "D", "alpha", "R0", 2021-07-14T11:30:50,788 | ^~~~~~~ 2021-07-14T11:30:50,789 Interface/PotentialInterface.cpp:567:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,789 567 | "D", "alpha", "R0", 2021-07-14T11:30:50,790 | ^~~~ 2021-07-14T11:30:50,790 Interface/PotentialInterface.cpp:568:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,790 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:30:50,791 | ^~~ 2021-07-14T11:30:50,791 Interface/PotentialInterface.cpp:568:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,792 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:30:50,792 | ^~~ 2021-07-14T11:30:50,792 Interface/PotentialInterface.cpp:568:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,793 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:30:50,793 | ^~~~ 2021-07-14T11:30:50,794 Interface/PotentialInterface.cpp:568:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,794 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T11:30:50,794 | ^~~~~~~~~~~ 2021-07-14T11:30:50,795 Interface/PotentialInterface.cpp:569:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,805 569 | "E", "rho0", "l0", 2021-07-14T11:30:50,806 | ^~~ 2021-07-14T11:30:50,806 Interface/PotentialInterface.cpp:569:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,807 569 | "E", "rho0", "l0", 2021-07-14T11:30:50,807 | ^~~~~~ 2021-07-14T11:30:50,808 Interface/PotentialInterface.cpp:569:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,808 569 | "E", "rho0", "l0", 2021-07-14T11:30:50,809 | ^~~~ 2021-07-14T11:30:50,809 Interface/PotentialInterface.cpp:570:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,809 570 | "B", "C", 2021-07-14T11:30:50,810 | ^~~ 2021-07-14T11:30:50,810 Interface/PotentialInterface.cpp:570:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,811 570 | "B", "C", 2021-07-14T11:30:50,811 | ^~~ 2021-07-14T11:30:50,811 Interface/PotentialInterface.cpp:571:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,812 571 | "interface_cut", "verbose", NULL}; 2021-07-14T11:30:50,812 | ^~~~~~~~~~~~~~~ 2021-07-14T11:30:50,813 Interface/PotentialInterface.cpp:571:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,813 571 | "interface_cut", "verbose", NULL}; 2021-07-14T11:30:50,813 | ^~~~~~~~~ 2021-07-14T11:30:50,814 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MorseInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,814 Interface/PotentialInterface.cpp:647:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,815 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T11:30:50,815 | ^~~~~~~~~~ 2021-07-14T11:30:50,826 Interface/PotentialInterface.cpp:647:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,826 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T11:30:50,827 | ^~~~~~~~~ 2021-07-14T11:30:50,827 Interface/PotentialInterface.cpp:647:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,827 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T11:30:50,828 | ^~~~~~~ 2021-07-14T11:30:50,828 Interface/PotentialInterface.cpp:647:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,829 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T11:30:50,829 | ^~~~~~ 2021-07-14T11:30:50,830 Interface/PotentialInterface.cpp:648:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,830 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T11:30:50,831 | ^~~~~~ 2021-07-14T11:30:50,831 Interface/PotentialInterface.cpp:648:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,832 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T11:30:50,832 | ^~~~~~~~~~ 2021-07-14T11:30:50,833 Interface/PotentialInterface.cpp:648:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,833 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T11:30:50,833 | ^~~~~~~~~ 2021-07-14T11:30:50,834 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetPotentialEnergy(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:30:50,834 Interface/PotentialInterface.cpp:711:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,835 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T11:30:50,845 | ^~~~~~~ 2021-07-14T11:30:50,846 Interface/PotentialInterface.cpp:711:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:30:50,846 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T11:30:50,846 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T11:30:50,847 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetExtra(AsapNS::PyAsap_PotentialObject*, PyObject*)’: 2021-07-14T11:30:50,847 Interface/PotentialInterface.cpp:863:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:30:50,847 863 | for (int i = 0; i < s1.size(); i++) 2021-07-14T11:30:50,848 | ~~^~~~~~~~~~~ 2021-07-14T11:30:55,874 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PythonConversions.cpp -o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o 2021-07-14T11:30:58,274 In file included from Basics/AsapPython.h:44, 2021-07-14T11:30:58,275 from Interface/PythonConversions.h:30, 2021-07-14T11:30:58,275 from Interface/PythonConversions.cpp:24: 2021-07-14T11:30:58,276 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:30:58,276 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:58,277 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:30:58,278 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:58,278 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:58,279 | ^~ 2021-07-14T11:30:58,291 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:30:58,291 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:58,292 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:30:58,292 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:58,292 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:58,293 | ^~ 2021-07-14T11:30:58,305 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:30:58,305 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:58,305 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:30:58,306 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:58,306 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:58,306 | ^~ 2021-07-14T11:30:58,320 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:30:58,321 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:58,321 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:30:58,322 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:58,322 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:58,322 | ^~ 2021-07-14T11:30:58,336 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:30:58,336 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:30:58,337 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:30:58,337 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:30:58,338 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:30:58,338 | ^~ 2021-07-14T11:30:59,792 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/RDFInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o 2021-07-14T11:31:02,696 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:02,697 from Interface/RDFInterface.h:30, 2021-07-14T11:31:02,697 from Interface/RDFInterface.cpp:27: 2021-07-14T11:31:02,697 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:31:02,698 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:02,698 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:31:02,698 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:02,699 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:02,699 | ^~ 2021-07-14T11:31:02,720 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:31:02,721 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:02,721 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:31:02,722 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:02,722 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:02,722 | ^~ 2021-07-14T11:31:02,732 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:31:02,733 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:02,733 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:31:02,734 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:02,734 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:02,734 | ^~ 2021-07-14T11:31:02,749 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:31:02,749 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:02,750 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:31:02,750 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:02,751 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:02,751 | ^~ 2021-07-14T11:31:02,763 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:31:02,763 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:02,764 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:31:02,764 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:02,764 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:02,764 | ^~ 2021-07-14T11:31:06,601 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ToolsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o 2021-07-14T11:31:08,937 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:08,937 from Interface/ToolsInterface.cpp:27: 2021-07-14T11:31:08,937 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:31:08,938 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:08,938 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:31:08,938 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:08,939 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:08,939 | ^~ 2021-07-14T11:31:08,952 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:31:08,952 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:08,952 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:31:08,953 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:08,953 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:08,954 | ^~ 2021-07-14T11:31:08,963 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:31:08,963 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:08,963 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:31:08,964 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:08,964 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:08,964 | ^~ 2021-07-14T11:31:08,975 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:31:08,976 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:08,976 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:31:08,976 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:08,977 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:08,977 | ^~ 2021-07-14T11:31:08,989 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:31:08,990 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:31:08,990 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:31:08,991 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:08,991 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:08,991 | ^~ 2021-07-14T11:31:09,325 Interface/ToolsInterface.cpp: In function ‘int AsapNS::PyAsap_FullCNAInit(AsapNS::PyAsap_FullCNAObject*, PyObject*, PyObject*)’: 2021-07-14T11:31:09,326 Interface/ToolsInterface.cpp:92:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:31:09,326 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T11:31:09,326 | ^~~~~~~ 2021-07-14T11:31:09,327 Interface/ToolsInterface.cpp:92:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:31:09,327 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T11:31:09,328 | ^~~~~~~~ 2021-07-14T11:31:10,845 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/alloy_types.cpp -o build/temp.linux-armv7l-3.9/PTM/alloy_types.o 2021-07-14T11:31:13,715 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/canonical.cpp -o build/temp.linux-armv7l-3.9/PTM/canonical.o 2021-07-14T11:31:16,609 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/convex_hull_incremental.cpp -o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o 2021-07-14T11:31:19,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/deformation_gradient.cpp -o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o 2021-07-14T11:31:22,373 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/graph_data.cpp -o build/temp.linux-armv7l-3.9/PTM/graph_data.o 2021-07-14T11:31:25,275 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/index_ptm.cpp -o build/temp.linux-armv7l-3.9/PTM/index_ptm.o 2021-07-14T11:31:28,753 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/initialize_data.cpp -o build/temp.linux-armv7l-3.9/PTM/initialize_data.o 2021-07-14T11:31:32,375 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/neighbour_ordering.cpp -o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o 2021-07-14T11:31:35,345 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/normalize_vertices.cpp -o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o 2021-07-14T11:31:35,877 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/polar.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o 2021-07-14T11:31:37,425 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/quat.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o 2021-07-14T11:31:38,203 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/voronoi/cell.cpp -o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o 2021-07-14T11:31:44,539 In file included from /usr/include/c++/10/vector:72, 2021-07-14T11:31:44,539 from PTM/voronoi/cell.hpp:15, 2021-07-14T11:31:44,539 from PTM/voronoi/cell.cpp:16: 2021-07-14T11:31:44,540 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T11:31:44,540 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T11:31:44,540 426 | vector<_Tp, _Alloc>:: 2021-07-14T11:31:44,541 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:44,713 /usr/include/c++/10/bits/vector.tcc: In member function ‘void voro::voronoicell_base::face_areas(std::vector&)’: 2021-07-14T11:31:44,713 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:31:44,713 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T11:31:44,714 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:45,028 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT.o 2021-07-14T11:31:48,762 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::SetAtoms(PyObject*, AsapNS::Atoms*)’: 2021-07-14T11:31:48,762 Potentials/EMT.cpp:193:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:48,763 193 | for (int i = 0; i < parameters.size(); i++) 2021-07-14T11:31:48,763 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:48,816 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::Allocate()’: 2021-07-14T11:31:48,816 Potentials/EMT.cpp:242:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:48,816 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T11:31:48,817 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-14T11:31:48,817 Potentials/EMT.cpp:242:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:48,818 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T11:31:48,818 | ~~~~~~~^~~~~~~~~~~~~ 2021-07-14T11:31:48,819 Potentials/EMT.cpp:251:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:48,820 251 | if (force.capacity() < nSize) 2021-07-14T11:31:48,820 | ~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:31:48,821 Potentials/EMT.cpp:262:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:48,822 262 | if (Eas.capacity() < nAtoms) 2021-07-14T11:31:48,822 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:31:48,825 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::AllocateStress()’: 2021-07-14T11:31:48,825 Potentials/EMT.cpp:302:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:48,825 302 | if (ghostatoms && (virials.capacity() < nSize)) 2021-07-14T11:31:48,826 | ~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:31:48,836 In file included from Basics/AsapPython.h:44, 2021-07-14T11:31:48,836 from Potentials/EMT.h:34, 2021-07-14T11:31:48,836 from Potentials/EMT.cpp:34: 2021-07-14T11:31:48,837 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::InitParameters()’: 2021-07-14T11:31:48,837 Potentials/EMT.cpp:324:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:48,838 324 | ASSERT(nelements == elements_set.size()); 2021-07-14T11:31:48,838 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:31:48,838 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:48,838 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:48,839 | ^~ 2021-07-14T11:31:48,877 Potentials/EMT.cpp: In member function ‘virtual const std::vector& AsapNS::EMT::GetPotentialEnergies(PyObject*)’: 2021-07-14T11:31:48,877 Potentials/EMT.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:48,877 538 | ASSERT(Epot.size() == nAtoms); 2021-07-14T11:31:48,878 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:31:48,878 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:48,879 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:48,879 | ^~ 2021-07-14T11:31:48,935 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T11:31:48,935 Potentials/EMT.cpp:1259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:48,935 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T11:31:48,936 | ~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:31:48,936 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:48,936 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:48,936 | ^~ 2021-07-14T11:31:48,937 Potentials/EMT.cpp:1259:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:48,938 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T11:31:48,938 | ~~~~~~~^~~~~~~~~~~~ 2021-07-14T11:31:48,938 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:48,939 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:48,939 | ^~ 2021-07-14T11:31:48,940 Potentials/EMT.cpp:1260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:31:48,940 1260 | nSize == dEds.size()); 2021-07-14T11:31:48,940 | ~~~~~~^~~~~~~~~~~~~~ 2021-07-14T11:31:48,941 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:48,941 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:48,941 | ^~ 2021-07-14T11:31:48,958 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergies()’: 2021-07-14T11:31:48,959 Potentials/EMT.cpp:1425:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:48,959 1425 | ASSERT(virials.size() == nSize); 2021-07-14T11:31:48,959 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:31:48,960 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:48,960 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:48,960 | ^~ 2021-07-14T11:31:48,972 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergiesSingle()’: 2021-07-14T11:31:48,973 Potentials/EMT.cpp:1544:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:48,973 1544 | ASSERT(this->force.size() >= nSize); 2021-07-14T11:31:48,973 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:31:48,974 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:48,974 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:48,974 | ^~ 2021-07-14T11:31:48,976 Potentials/EMT.cpp:1547:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:31:48,976 1547 | ASSERT(virials.size() == nSize); 2021-07-14T11:31:48,976 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:31:48,977 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:31:48,977 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:31:48,977 | ^~ 2021-07-14T11:32:01,119 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT2013.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o 2021-07-14T11:32:04,850 In file included from Basics/AsapPython.h:44, 2021-07-14T11:32:04,850 from Potentials/EMT.h:34, 2021-07-14T11:32:04,850 from Potentials/EMT2013.h:13, 2021-07-14T11:32:04,850 from Potentials/EMT2013.cpp:8: 2021-07-14T11:32:04,851 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::InitParameters()’: 2021-07-14T11:32:04,851 Potentials/EMT2013.cpp:105:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:32:04,851 105 | ASSERT(nelements == elements_set.size()); 2021-07-14T11:32:04,851 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:32:04,852 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:04,852 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:04,852 | ^~ 2021-07-14T11:32:04,911 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T11:32:04,912 Potentials/EMT2013.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:32:04,912 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T11:32:04,912 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:32:04,913 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:04,913 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:04,913 | ^~ 2021-07-14T11:32:04,914 Potentials/EMT2013.cpp:568:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:32:04,914 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T11:32:04,915 | ~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:32:04,915 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:04,915 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:04,916 | ^~ 2021-07-14T11:32:04,916 Potentials/EMT2013.cpp:569:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:32:04,917 569 | nSize == this->dEds.size()); 2021-07-14T11:32:04,917 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:32:04,918 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:04,918 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:04,918 | ^~ 2021-07-14T11:32:10,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o 2021-07-14T11:32:14,470 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o 2021-07-14T11:32:18,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o 2021-07-14T11:32:22,277 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/LennardJones.cpp -o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o 2021-07-14T11:32:25,421 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetVirials(PyObject*)’: 2021-07-14T11:32:25,421 Potentials/LennardJones.cpp:374:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:32:25,422 374 | if (nAtoms != virials.size()) 2021-07-14T11:32:25,422 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:32:25,433 In file included from Basics/AsapPython.h:44, 2021-07-14T11:32:25,434 from Potentials/LennardJones.cpp:43: 2021-07-14T11:32:25,434 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetForces(PyObject*)’: 2021-07-14T11:32:25,434 Potentials/LennardJones.cpp:484:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:32:25,435 484 | ASSERT(forces.size() == nSize); 2021-07-14T11:32:25,435 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:32:25,436 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:25,436 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:25,436 | ^~ 2021-07-14T11:32:25,442 Potentials/LennardJones.cpp: In member function ‘double AsapNS::LennardJones::CalculateEnergyAndEnergies()’: 2021-07-14T11:32:25,443 Potentials/LennardJones.cpp:580:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:32:25,443 580 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:32:25,443 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:32:25,444 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:25,444 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:25,444 | ^~ 2021-07-14T11:32:30,889 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o 2021-07-14T11:32:34,530 In file included from Basics/AsapPython.h:44, 2021-07-14T11:32:34,530 from Potentials/MetalOxideInterface.cpp:29: 2021-07-14T11:32:34,531 Potentials/MetalOxideInterface.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface::GetForces(PyObject*)’: 2021-07-14T11:32:34,531 Potentials/MetalOxideInterface.cpp:316:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:32:34,532 316 | ASSERT(forces.size() == nSize); 2021-07-14T11:32:34,532 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:32:34,532 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:34,533 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:34,533 | ^~ 2021-07-14T11:32:34,558 Potentials/MetalOxideInterface.cpp: In member function ‘double AsapNS::MetalOxideInterface::CalculateEnergyAndEnergies()’: 2021-07-14T11:32:34,559 Potentials/MetalOxideInterface.cpp:571:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:32:34,559 571 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:32:34,559 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:32:34,560 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:34,560 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:34,560 | ^~ 2021-07-14T11:32:40,777 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface2.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o 2021-07-14T11:32:43,866 In file included from Basics/AsapPython.h:44, 2021-07-14T11:32:43,866 from Potentials/MetalOxideInterface2.cpp:43: 2021-07-14T11:32:43,866 Potentials/MetalOxideInterface2.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface2::GetForces(PyObject*)’: 2021-07-14T11:32:43,867 Potentials/MetalOxideInterface2.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:32:43,867 330 | ASSERT(forces.size() == nSize); 2021-07-14T11:32:43,867 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:32:43,868 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:43,868 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:43,868 | ^~ 2021-07-14T11:32:43,891 Potentials/MetalOxideInterface2.cpp: In member function ‘double AsapNS::MetalOxideInterface2::CalculateEnergyAndEnergies()’: 2021-07-14T11:32:43,891 Potentials/MetalOxideInterface2.cpp:552:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:32:43,892 552 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:32:43,892 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:32:43,892 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:32:43,892 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:32:43,893 | ^~ 2021-07-14T11:32:50,879 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MonteCarloEMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o 2021-07-14T11:32:57,845 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Morse.cpp -o build/temp.linux-armv7l-3.9/Potentials/Morse.o 2021-07-14T11:33:01,465 In file included from Basics/AsapPython.h:44, 2021-07-14T11:33:01,465 from Potentials/Morse.cpp:43: 2021-07-14T11:33:01,466 Potentials/Morse.cpp: In member function ‘double AsapNS::Morse::CalculateEnergyAndEnergies()’: 2021-07-14T11:33:01,466 Potentials/Morse.cpp:472:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:33:01,466 472 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:33:01,467 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:33:01,467 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:33:01,467 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:33:01,468 | ^~ 2021-07-14T11:33:05,654 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T11:33:05,654 from Potentials/Morse.cpp:54: 2021-07-14T11:33:05,654 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:33:05,655 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,655 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-14T11:33:05,655 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,656 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,656 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,657 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,684 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-14T11:33:05,685 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,685 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-14T11:33:05,685 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,708 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:33:05,708 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,709 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-14T11:33:05,709 | ^~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,709 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,749 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-14T11:33:05,749 from /usr/include/c++/10/algorithm:62, 2021-07-14T11:33:05,750 from Potentials/Morse.cpp:54: 2021-07-14T11:33:05,750 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:33:05,750 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,751 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-14T11:33:05,751 | ^~~~~~~~~~~~~ 2021-07-14T11:33:05,806 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T11:33:05,806 from Potentials/Morse.cpp:54: 2021-07-14T11:33:05,806 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:33:05,807 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,807 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-14T11:33:05,807 | ^~~~~~~~~~~~~ 2021-07-14T11:33:05,808 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,808 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,809 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,853 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T11:33:05,853 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,854 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-14T11:33:05,854 | ^~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,854 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,855 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,855 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,855 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-14T11:33:05,856 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,856 1925 | __comp); 2021-07-14T11:33:05,856 | ~~~~~~~ 2021-07-14T11:33:05,857 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,857 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,857 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-14T11:33:05,858 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,858 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,858 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-14T11:33:05,858 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,957 /usr/include/c++/10/bits/stl_algo.h: In member function ‘double AsapNS::Morse::Add(std::vector&)’: 2021-07-14T11:33:05,957 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,958 1974 | std::__introsort_loop(__first, __last, 2021-07-14T11:33:05,958 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,958 1975 | std::__lg(__last - __first) * 2, 2021-07-14T11:33:05,958 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,959 1976 | __comp); 2021-07-14T11:33:05,959 | ~~~~~~~ 2021-07-14T11:33:05,959 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,959 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-14T11:33:05,960 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:05,960 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T11:33:05,960 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-14T11:33:05,960 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:06,534 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Potential.cpp -o build/temp.linux-armv7l-3.9/Potentials/Potential.o 2021-07-14T11:33:09,582 Potentials/Potential.cpp: In member function ‘virtual AsapNS::SymTensor AsapNS::Potential::GetVirial(PyObject*)’: 2021-07-14T11:33:09,583 Potentials/Potential.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:33:09,583 52 | for (int i = 0; i < virials.size(); i++) 2021-07-14T11:33:09,584 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T11:33:10,366 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RGL.cpp -o build/temp.linux-armv7l-3.9/Potentials/RGL.o 2021-07-14T11:33:13,774 Potentials/RGL.cpp: In member function ‘void AsapNS::RGL::Allocate()’: 2021-07-14T11:33:13,775 Potentials/RGL.cpp:127:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:33:13,775 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T11:33:13,775 | ~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T11:33:13,776 Potentials/RGL.cpp:127:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:33:13,776 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T11:33:13,776 | ~~~~~~~^~~~~~~~~~~~~~ 2021-07-14T11:33:18,862 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o 2021-07-14T11:33:22,276 In file included from Basics/AsapPython.h:44, 2021-07-14T11:33:22,276 from Potentials/RahmanStillingerLemberg.cpp:43: 2021-07-14T11:33:22,276 Potentials/RahmanStillingerLemberg.cpp: In member function ‘virtual const std::vector& AsapNS::RahmanStillingerLemberg::GetForces(PyObject*)’: 2021-07-14T11:33:22,277 Potentials/RahmanStillingerLemberg.cpp:355:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:33:22,277 355 | ASSERT(forces.size() == nSize); 2021-07-14T11:33:22,278 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T11:33:22,278 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:33:22,278 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:33:22,279 | ^~ 2021-07-14T11:33:22,289 Potentials/RahmanStillingerLemberg.cpp: In member function ‘double AsapNS::RahmanStillingerLemberg::CalculateEnergyAndEnergies()’: 2021-07-14T11:33:22,289 Potentials/RahmanStillingerLemberg.cpp:452:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:33:22,289 452 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T11:33:22,290 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T11:33:22,290 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:33:22,291 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:33:22,291 | ^~ 2021-07-14T11:33:27,630 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CNA.cpp -o build/temp.linux-armv7l-3.9/Tools/CNA.o 2021-07-14T11:33:31,340 Tools/CNA.cpp: In function ‘void AsapNS::CNA(PyObject*, double, std::vector&)’: 2021-07-14T11:33:31,340 Tools/CNA.cpp:54:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:33:31,341 54 | for (unsigned int a2 = 0; a2 < nTotal; a2++) 2021-07-14T11:33:31,341 | ~~~^~~~~~~~ 2021-07-14T11:33:31,345 Tools/CNA.cpp:62:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:33:31,346 62 | if (a1 < a2) 2021-07-14T11:33:31,346 | ~~~^~~~ 2021-07-14T11:33:31,347 Tools/CNA.cpp:82:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T11:33:31,348 82 | for (unsigned int j1 = 0; j1 < j2; j1++) 2021-07-14T11:33:31,348 | ~~~^~~~ 2021-07-14T11:33:33,550 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CoordinationNumbers.cpp -o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o 2021-07-14T11:33:38,083 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/FullCNA.cpp -o build/temp.linux-armv7l-3.9/Tools/FullCNA.o 2021-07-14T11:33:46,168 In file included from /usr/include/c++/10/map:60, 2021-07-14T11:33:46,169 from Tools/FullCNA.h:35, 2021-07-14T11:33:46,169 from Tools/FullCNA.cpp:24: 2021-07-14T11:33:46,169 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T11:33:46,170 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T11:33:46,170 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T11:33:46,170 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:46,909 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T11:33:46,910 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T11:33:46,910 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T11:33:46,911 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:46,996 In file included from /usr/include/c++/10/map:61, 2021-07-14T11:33:46,996 from Tools/FullCNA.h:35, 2021-07-14T11:33:46,997 from Tools/FullCNA.cpp:24: 2021-07-14T11:33:46,997 /usr/include/c++/10/bits/stl_map.h: In member function ‘void AsapNS::FullCNA::SetMultipleCutoffs(std::map, double>&)’: 2021-07-14T11:33:46,997 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T11:33:46,997 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T11:33:46,998 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:46,998 502 | std::tuple(__k), 2021-07-14T11:33:46,998 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:46,998 503 | std::tuple<>()); 2021-07-14T11:33:46,999 | ~~~~~~~~~~~~~~~ 2021-07-14T11:33:47,000 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T11:33:47,000 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T11:33:47,001 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:47,001 502 | std::tuple(__k), 2021-07-14T11:33:47,001 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:33:47,002 503 | std::tuple<>()); 2021-07-14T11:33:47,002 | ~~~~~~~~~~~~~~~ 2021-07-14T11:33:48,518 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/GetNeighborList.cpp -o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o 2021-07-14T11:33:52,498 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/RawRadialDistribution.cpp -o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o 2021-07-14T11:33:55,053 In file included from Basics/AsapPython.h:44, 2021-07-14T11:33:55,054 from Tools/RawRadialDistribution.cpp:29: 2021-07-14T11:33:55,054 Tools/RawRadialDistribution.cpp: In function ‘void AsapNS::RawRadialDistribution(PyObject*, int, const int*, double, int, AsapNS::RDFtype&, AsapNS::RDFcountType&, long int*)’: 2021-07-14T11:33:55,054 Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integer expressions of different signedness: ‘std::vector, long int*> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:33:55,055 55 | ASSERT(result.size() == nGroups); 2021-07-14T11:33:55,055 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T11:33:55,055 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:33:55,055 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:33:55,056 | ^~ 2021-07-14T11:33:55,066 Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:33:55,067 56 | ASSERT(counts.size() == nGroups); 2021-07-14T11:33:55,067 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T11:33:55,067 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:33:55,068 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:33:55,068 | ^~ 2021-07-14T11:33:57,722 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o 2021-07-14T11:34:02,220 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c VersionInfo_autogen/version_piwheels37_s.cpp -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels37_s.o 2021-07-14T11:34:02,540 VersionInfo_autogen/version_piwheels37_s.cpp:15:61: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2021-07-14T11:34:02,540 15 | return ("ASAP version 3.11.9 serial, compiled " __DATE__ " " __TIME__ " on piwheels37 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T11:34:02,540 | ^~~~~~~~ 2021-07-14T11:34:02,555 VersionInfo_autogen/version_piwheels37_s.cpp:15:74: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2021-07-14T11:34:02,555 15 | return ("ASAP version 3.11.9 serial, compiled " __DATE__ " " __TIME__ " on piwheels37 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T11:34:02,556 | ^~~~~~~~ 2021-07-14T11:34:03,459 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels37_s.o -lm -o build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so 2021-07-14T11:34:05,649 *** Building the asap-python executable *** 2021-07-14T11:34:05,653 *** COMPILING: ['ParallelInterface/mpi.c'] 2021-07-14T11:34:05,654 mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o -c ParallelInterface/mpi.c 2021-07-14T11:34:08,059 *** COMPILING: ['Parallel/ParallelAtoms.cpp', 'Parallel/ParallelPotential.cpp', 'Parallel/RegularGridDecomposition.cpp', 'ParallelInterface/AsapParallel.cpp', 'ParallelInterface/ParallelAtomsInterface.cpp', 'ParallelInterface/ParallelNeighborListInterface.cpp', 'ParallelInterface/ParallelPotentialInterface.cpp', 'VersionInfo_autogen/version_piwheels37_p.cpp'] 2021-07-14T11:34:08,059 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o -c Parallel/ParallelAtoms.cpp 2021-07-14T11:34:11,427 In file included from Basics/AsapPython.h:44, 2021-07-14T11:34:11,427 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:34:11,428 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:34:11,428 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T11:34:11,429 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:34:11,429 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T11:34:11,429 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,430 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:11,430 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:11,431 | ^~ 2021-07-14T11:34:11,432 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T11:34:11,433 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:34:11,433 301 | ASSERT(sendbuf.size() == size); 2021-07-14T11:34:11,433 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:34:11,434 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:11,434 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:11,434 | ^~ 2021-07-14T11:34:11,486 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::Migrate(bool)’: 2021-07-14T11:34:11,486 Parallel/ParallelAtoms.cpp:241:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:34:11,487 241 | (sendlist->size() < nProcessors)); 2021-07-14T11:34:11,487 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2021-07-14T11:34:11,487 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:11,488 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:11,488 | ^~ 2021-07-14T11:34:11,541 Parallel/ParallelAtoms.cpp:318:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,541 318 | for (int j = 0; j < arrays.size(); j++) 2021-07-14T11:34:11,542 | ~~^~~~~~~~~~~~~~~ 2021-07-14T11:34:11,544 Parallel/ParallelAtoms.cpp:338:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,544 338 | for (int j = 0; j < new_arrays.size(); j++) 2021-07-14T11:34:11,545 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,546 In file included from Basics/AsapPython.h:44, 2021-07-14T11:34:11,547 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:34:11,547 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:34:11,547 Parallel/ParallelAtoms.cpp:345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,548 345 | ASSERT(b - b0 == receiveBuffer.size()); 2021-07-14T11:34:11,548 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,549 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:11,549 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:11,549 | ^~ 2021-07-14T11:34:11,653 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::UpdateGhostData()’: 2021-07-14T11:34:11,654 Parallel/ParallelAtoms.cpp:609:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,654 609 | for (int i = 0; i < array_names.size(); i++) 2021-07-14T11:34:11,655 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,658 Parallel/ParallelAtoms.cpp:630:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,659 630 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T11:34:11,659 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,660 Parallel/ParallelAtoms.cpp:637:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,661 637 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T11:34:11,661 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,672 In file included from Basics/AsapPython.h:44, 2021-07-14T11:34:11,672 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:34:11,673 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:34:11,673 Parallel/ParallelAtoms.cpp:649:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,674 649 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); 2021-07-14T11:34:11,674 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,674 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:11,675 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:11,675 | ^~ 2021-07-14T11:34:11,677 Parallel/ParallelAtoms.cpp:659:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,677 659 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T11:34:11,677 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,686 Parallel/ParallelAtoms.cpp: In member function ‘virtual void AsapNS::ParallelAtoms::CommunicateData(double*, int)’: 2021-07-14T11:34:11,687 Parallel/ParallelAtoms.cpp:717:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,687 717 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T11:34:11,687 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,740 In file included from Basics/AsapPython.h:44, 2021-07-14T11:34:11,740 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:34:11,740 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:34:11,741 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T11:34:11,741 Parallel/ParallelAtoms.cpp:1105:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:34:11,741 1105 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T11:34:11,742 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,742 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:11,742 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:11,743 | ^~ 2021-07-14T11:34:11,745 Parallel/ParallelAtoms.cpp:1111:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,745 1111 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T11:34:11,746 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,763 In file included from Basics/AsapPython.h:44, 2021-07-14T11:34:11,764 from Parallel/ParallelAtoms.h:28, 2021-07-14T11:34:11,764 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T11:34:11,764 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T11:34:11,765 Parallel/ParallelAtoms.cpp:1138:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:34:11,765 1138 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T11:34:11,765 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:11,766 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:11,766 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:11,766 | ^~ 2021-07-14T11:34:11,768 Parallel/ParallelAtoms.cpp:1144:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T11:34:11,769 1144 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T11:34:11,769 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:21,878 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o -c Parallel/ParallelPotential.cpp 2021-07-14T11:34:25,146 In file included from Basics/AsapPython.h:44, 2021-07-14T11:34:25,146 from Parallel/ParallelPotential.h:28, 2021-07-14T11:34:25,147 from Parallel/ParallelPotential.cpp:24: 2021-07-14T11:34:25,147 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T11:34:25,147 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:34:25,148 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T11:34:25,148 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:25,148 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:25,149 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:25,149 | ^~ 2021-07-14T11:34:25,151 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T11:34:25,151 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:34:25,152 301 | ASSERT(sendbuf.size() == size); 2021-07-14T11:34:25,152 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:34:25,152 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:25,152 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:25,153 | ^~ 2021-07-14T11:34:28,351 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o -c Parallel/RegularGridDecomposition.cpp 2021-07-14T11:34:32,021 In file included from Basics/AsapPython.h:44, 2021-07-14T11:34:32,021 from Parallel/RegularGridDecomposition.cpp:24: 2021-07-14T11:34:32,022 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T11:34:32,022 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:34:32,023 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T11:34:32,023 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T11:34:32,024 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:32,024 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:32,025 | ^~ 2021-07-14T11:34:32,028 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T11:34:32,028 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T11:34:32,029 301 | ASSERT(sendbuf.size() == size); 2021-07-14T11:34:32,029 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T11:34:32,030 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:32,030 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:32,031 | ^~ 2021-07-14T11:34:36,769 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o -c ParallelInterface/AsapParallel.cpp 2021-07-14T11:34:40,857 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o -c ParallelInterface/ParallelAtomsInterface.cpp 2021-07-14T11:34:44,586 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o -c ParallelInterface/ParallelNeighborListInterface.cpp 2021-07-14T11:34:47,464 In file included from Basics/AsapPython.h:44, 2021-07-14T11:34:47,465 from ParallelInterface/ParallelNeighborListInterface.cpp:2: 2021-07-14T11:34:47,465 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T11:34:47,465 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:34:47,466 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T11:34:47,466 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:47,466 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:47,466 | ^~ 2021-07-14T11:34:47,481 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T11:34:47,482 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:34:47,482 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T11:34:47,483 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:47,483 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:47,484 | ^~ 2021-07-14T11:34:47,495 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T11:34:47,495 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:34:47,496 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T11:34:47,496 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:47,496 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:47,497 | ^~ 2021-07-14T11:34:47,513 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T11:34:47,513 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:34:47,514 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T11:34:47,514 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:47,514 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:47,514 | ^~ 2021-07-14T11:34:47,528 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T11:34:47,528 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T11:34:47,529 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T11:34:47,529 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T11:34:47,529 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T11:34:47,530 | ^~ 2021-07-14T11:34:48,026 ParallelInterface/ParallelNeighborListInterface.cpp: In function ‘PyObject* PyAsap_NewNeighborCellLocator_Parallel(PyObject*, PyObject*, PyObject*)’: 2021-07-14T11:34:48,026 ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:34:48,026 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:34:48,027 | ^~~~~~ 2021-07-14T11:34:48,027 ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:34:48,028 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:34:48,028 | ^~~~~~~ 2021-07-14T11:34:48,029 ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:34:48,029 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T11:34:48,029 | ^~~~~~~~~~~~~ 2021-07-14T11:34:48,734 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o -c ParallelInterface/ParallelPotentialInterface.cpp 2021-07-14T11:34:51,153 ParallelInterface/ParallelPotentialInterface.cpp: In function ‘int PyAsap_ParPotInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T11:34:51,153 ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T11:34:51,153 48 | static char *kwlist[] = {"potential", NULL}; 2021-07-14T11:34:51,154 | ^~~~~~~~~~~ 2021-07-14T11:34:51,821 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels37_p.o -c VersionInfo_autogen/version_piwheels37_p.cpp 2021-07-14T11:34:53,296 mpicxx -o build/bin.linux-armv7l-3.9/asap-python build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels37_p.o -L/usr/lib/python3.9/config-3.9-arm-linux-gnueabihf -lm -lpython3.9 -lm -lpython3.9 -lcrypt -lpthread -ldl -lutil -lm -lm -Wl,-z,relro -g -fwrapv -O2 -lexpat -L/usr/lib -lz -lexpat -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-14T11:34:55,908 running build_scripts 2021-07-14T11:34:55,909 Protecting build/bin.linux-armv7l-3.9/asap-python from ajustment 2021-07-14T11:34:55,910 creating build/scripts-3.9 2021-07-14T11:34:55,913 copying and adjusting scripts/asap-qsub -> build/scripts-3.9 2021-07-14T11:34:55,917 copying and adjusting scripts/asap-sbatch -> build/scripts-3.9 2021-07-14T11:34:55,920 changing mode of build/scripts-3.9/asap-qsub from 644 to 755 2021-07-14T11:34:55,921 changing mode of build/scripts-3.9/asap-sbatch from 644 to 755 2021-07-14T11:34:55,923 copying build/bin.linux-armv7l-3.9/asap-python -> build/scripts-3.9 2021-07-14T11:34:56,337 installing to build/bdist.linux-armv7l/wheel 2021-07-14T11:34:56,338 running install 2021-07-14T11:34:56,340 running install_lib 2021-07-14T11:34:56,346 creating build/bdist.linux-armv7l 2021-07-14T11:34:56,347 creating build/bdist.linux-armv7l/wheel 2021-07-14T11:34:56,349 copying build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-14T11:34:56,726 creating build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:56,729 creating build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,731 copying build/lib.linux-armv7l-3.9/asap3/Tools/MaterialProperties.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,735 copying build/lib.linux-armv7l-3.9/asap3/Tools/niflheim.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,738 copying build/lib.linux-armv7l-3.9/asap3/Tools/EMT_two_atom_test.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,742 copying build/lib.linux-armv7l-3.9/asap3/Tools/Timing.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,746 copying build/lib.linux-armv7l-3.9/asap3/Tools/AsapFileToTrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,749 copying build/lib.linux-armv7l-3.9/asap3/Tools/ElasticConstants.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,753 creating build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,755 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/RGL.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,758 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/GetParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,761 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,766 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Optimization.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,770 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Performance.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,774 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Search.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,779 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Sampling.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,784 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,788 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Quantities.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,795 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/EMT.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,800 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T11:34:56,803 copying build/lib.linux-armv7l-3.9/asap3/Tools/OptimizationDatabase.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,808 copying build/lib.linux-armv7l-3.9/asap3/Tools/SurfaceEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,813 copying build/lib.linux-armv7l-3.9/asap3/Tools/AtomicEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,817 copying build/lib.linux-armv7l-3.9/asap3/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T11:34:56,820 copying build/lib.linux-armv7l-3.9/asap3/testtools.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:56,825 creating build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,827 copying build/lib.linux-armv7l-3.9/asap3/Internal/OpenKIMcalculator.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,832 copying build/lib.linux-armv7l-3.9/asap3/Internal/BuiltinPotentials.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,837 copying build/lib.linux-armv7l-3.9/asap3/Internal/MonteCarloAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,840 copying build/lib.linux-armv7l-3.9/asap3/Internal/EMTParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,845 copying build/lib.linux-armv7l-3.9/asap3/Internal/ListOfElements.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,849 copying build/lib.linux-armv7l-3.9/asap3/Internal/Threads.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,854 copying build/lib.linux-armv7l-3.9/asap3/Internal/UtilityFunctions.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,859 copying build/lib.linux-armv7l-3.9/asap3/Internal/CheckArray.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,862 copying build/lib.linux-armv7l-3.9/asap3/Internal/ParallelListOfAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,868 copying build/lib.linux-armv7l-3.9/asap3/Internal/Builtins.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,873 creating build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T11:34:56,875 copying build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T11:34:56,879 copying build/lib.linux-armv7l-3.9/asap3/Internal/checkversion.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,883 copying build/lib.linux-armv7l-3.9/asap3/Internal/Subject.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,887 copying build/lib.linux-armv7l-3.9/asap3/Internal/Collector.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,891 copying build/lib.linux-armv7l-3.9/asap3/Internal/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T11:34:56,894 copying build/lib.linux-armv7l-3.9/asap3/EMT2011_py.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:56,899 copying build/lib.linux-armv7l-3.9/asap3/version.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:56,903 copying build/lib.linux-armv7l-3.9/asap3/constraints.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:56,908 creating build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:34:56,910 copying build/lib.linux-armv7l-3.9/asap3/optimize/optimize.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:34:56,914 copying build/lib.linux-armv7l-3.9/asap3/optimize/mdmin.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:34:56,918 copying build/lib.linux-armv7l-3.9/asap3/optimize/fire.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:34:56,923 copying build/lib.linux-armv7l-3.9/asap3/optimize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T11:34:56,928 creating build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:34:56,930 copying build/lib.linux-armv7l-3.9/asap3/setup/dislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:34:56,937 creating build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,938 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/quat_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,943 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,947 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/plane_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,950 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/dislocated.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,954 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/grain_structures.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,958 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/helpers.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,963 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/energy.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,967 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,971 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T11:34:56,975 copying build/lib.linux-armv7l-3.9/asap3/setup/displacementfield.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:34:56,987 copying build/lib.linux-armv7l-3.9/asap3/setup/VelocityDistribution.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:34:56,991 copying build/lib.linux-armv7l-3.9/asap3/setup/multidislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:34:56,995 copying build/lib.linux-armv7l-3.9/asap3/setup/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T11:34:56,998 copying build/lib.linux-armv7l-3.9/asap3/mpi.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:57,002 copying build/lib.linux-armv7l-3.9/asap3/memory.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:57,006 copying build/lib.linux-armv7l-3.9/asap3/fixepydoc.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:57,028 creating build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,030 copying build/lib.linux-armv7l-3.9/asap3/md/nvtberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,034 copying build/lib.linux-armv7l-3.9/asap3/md/langevin.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,039 copying build/lib.linux-armv7l-3.9/asap3/md/npt.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,043 copying build/lib.linux-armv7l-3.9/asap3/md/verlet_fast.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,047 copying build/lib.linux-armv7l-3.9/asap3/md/nptberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,051 copying build/lib.linux-armv7l-3.9/asap3/md/md.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,055 copying build/lib.linux-armv7l-3.9/asap3/md/verlet.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,068 copying build/lib.linux-armv7l-3.9/asap3/md/velocitydistribution.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,072 copying build/lib.linux-armv7l-3.9/asap3/md/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T11:34:57,075 copying build/lib.linux-armv7l-3.9/asap3/EMT2013Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:57,079 creating build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:34:57,081 copying build/lib.linux-armv7l-3.9/asap3/io/cpu_setup.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:34:57,084 copying build/lib.linux-armv7l-3.9/asap3/io/ReadOldFiles.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:34:57,087 copying build/lib.linux-armv7l-3.9/asap3/io/bundletrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:34:57,097 copying build/lib.linux-armv7l-3.9/asap3/io/trajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:34:57,101 copying build/lib.linux-armv7l-3.9/asap3/io/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T11:34:57,106 creating build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,108 copying build/lib.linux-armv7l-3.9/asap3/analysis/localstructure.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,112 copying build/lib.linux-armv7l-3.9/asap3/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,117 copying build/lib.linux-armv7l-3.9/asap3/analysis/cutcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,121 copying build/lib.linux-armv7l-3.9/asap3/analysis/findcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,126 copying build/lib.linux-armv7l-3.9/asap3/analysis/averagepositions.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,130 copying build/lib.linux-armv7l-3.9/asap3/analysis/particle.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,134 copying build/lib.linux-armv7l-3.9/asap3/analysis/ptm.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,139 copying build/lib.linux-armv7l-3.9/asap3/analysis/clusterposition.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,143 copying build/lib.linux-armv7l-3.9/asap3/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T11:34:57,146 copying build/lib.linux-armv7l-3.9/asap3/EMT2011Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:57,151 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,152 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/clusteratom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,157 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/atommontecarlodata.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,162 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/langmuirExpression.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,166 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/cluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,172 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:34:57,174 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/surface.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:34:57,180 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/atom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:34:57,186 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T11:34:57,189 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/mc_result.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,193 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/Logger.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,198 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:34:57,200 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:34:57,204 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:34:57,208 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/au.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:34:57,212 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T11:34:57,216 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/resizecluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,220 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/AdsCalc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,224 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T11:34:57,228 copying build/lib.linux-armv7l-3.9/asap3/GuptaParameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:57,232 copying build/lib.linux-armv7l-3.9/asap3/timing.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:57,237 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:34:57,238 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Basin.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:34:57,242 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Metropolis.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:34:57,245 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Start.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:34:57,249 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:34:57,254 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T11:34:57,256 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T11:34:57,260 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Surface.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T11:34:57,265 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T11:34:57,267 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T11:34:57,271 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T11:34:57,275 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T11:34:57,279 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T11:34:57,282 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T11:34:57,285 copying build/lib.linux-armv7l-3.9/asap3/__init__.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T11:34:57,289 running install_egg_info 2021-07-14T11:34:57,328 running egg_info 2021-07-14T11:34:57,336 creating asap3.egg-info 2021-07-14T11:34:57,338 writing asap3.egg-info/PKG-INFO 2021-07-14T11:34:57,342 writing dependency_links to asap3.egg-info/dependency_links.txt 2021-07-14T11:34:57,348 writing top-level names to asap3.egg-info/top_level.txt 2021-07-14T11:34:57,357 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T11:34:57,439 reading manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T11:34:57,442 reading manifest template 'MANIFEST.in' 2021-07-14T11:34:57,671 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T11:34:57,673 adding license file 'LICENSE' 2021-07-14T11:34:57,673 adding license file 'LICENSE.LESSER' 2021-07-14T11:34:57,693 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T11:34:57,696 Copying asap3.egg-info to build/bdist.linux-armv7l/wheel/asap3-3.11.9-py3.9.egg-info 2021-07-14T11:34:57,711 running install_scripts 2021-07-14T11:34:57,808 creating build/bdist.linux-armv7l/wheel/asap3-3.11.9.data 2021-07-14T11:34:57,808 creating build/bdist.linux-armv7l/wheel/asap3-3.11.9.data/scripts 2021-07-14T11:34:57,810 copying build/scripts-3.9/asap-sbatch -> build/bdist.linux-armv7l/wheel/asap3-3.11.9.data/scripts 2021-07-14T11:34:57,814 copying build/scripts-3.9/asap-qsub -> build/bdist.linux-armv7l/wheel/asap3-3.11.9.data/scripts 2021-07-14T11:34:57,817 copying build/scripts-3.9/asap-python -> build/bdist.linux-armv7l/wheel/asap3-3.11.9.data/scripts 2021-07-14T11:34:58,116 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.9.data/scripts/asap-sbatch to 755 2021-07-14T11:34:58,116 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.9.data/scripts/asap-qsub to 755 2021-07-14T11:34:58,117 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.9.data/scripts/asap-python to 755 2021-07-14T11:34:58,146 adding license file "LICENSE.LESSER" (matched pattern "LICEN[CS]E*") 2021-07-14T11:34:58,147 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-14T11:34:58,157 creating build/bdist.linux-armv7l/wheel/asap3-3.11.9.dist-info/WHEEL 2021-07-14T11:34:58,167 creating '/tmp/pip-wheel-pypztgxo/asap3-3.11.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T11:35:01,194 adding '_asap_p3.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T11:35:01,314 adding 'asap3/EMT2011Parameters.py' 2021-07-14T11:35:01,317 adding 'asap3/EMT2011_py.py' 2021-07-14T11:35:01,320 adding 'asap3/EMT2013Parameters.py' 2021-07-14T11:35:01,322 adding 'asap3/GuptaParameters.py' 2021-07-14T11:35:01,324 adding 'asap3/__init__.py' 2021-07-14T11:35:01,326 adding 'asap3/constraints.py' 2021-07-14T11:35:01,328 adding 'asap3/fixepydoc.py' 2021-07-14T11:35:01,330 adding 'asap3/memory.py' 2021-07-14T11:35:01,332 adding 'asap3/mpi.py' 2021-07-14T11:35:01,334 adding 'asap3/testtools.py' 2021-07-14T11:35:01,336 adding 'asap3/timing.py' 2021-07-14T11:35:01,338 adding 'asap3/version.py' 2021-07-14T11:35:01,343 adding 'asap3/Internal/BuiltinPotentials.py' 2021-07-14T11:35:01,345 adding 'asap3/Internal/Builtins.py' 2021-07-14T11:35:01,347 adding 'asap3/Internal/CheckArray.py' 2021-07-14T11:35:01,349 adding 'asap3/Internal/Collector.py' 2021-07-14T11:35:01,352 adding 'asap3/Internal/EMTParameters.py' 2021-07-14T11:35:01,354 adding 'asap3/Internal/ListOfElements.py' 2021-07-14T11:35:01,356 adding 'asap3/Internal/MonteCarloAtoms.py' 2021-07-14T11:35:01,366 adding 'asap3/Internal/OpenKIMcalculator.py' 2021-07-14T11:35:01,387 adding 'asap3/Internal/ParallelListOfAtoms.py' 2021-07-14T11:35:01,391 adding 'asap3/Internal/Subject.py' 2021-07-14T11:35:01,393 adding 'asap3/Internal/Threads.py' 2021-07-14T11:35:01,396 adding 'asap3/Internal/UtilityFunctions.py' 2021-07-14T11:35:01,417 adding 'asap3/Internal/__init__.py' 2021-07-14T11:35:01,419 adding 'asap3/Internal/checkversion.py' 2021-07-14T11:35:01,422 adding 'asap3/Internal/Compatibility/__init__.py' 2021-07-14T11:35:01,426 adding 'asap3/MonteCarlo/Base.py' 2021-07-14T11:35:01,438 adding 'asap3/MonteCarlo/Basin.py' 2021-07-14T11:35:01,440 adding 'asap3/MonteCarlo/Metropolis.py' 2021-07-14T11:35:01,442 adding 'asap3/MonteCarlo/Start.py' 2021-07-14T11:35:01,445 adding 'asap3/MonteCarlo/__init__.py' 2021-07-14T11:35:01,458 adding 'asap3/MonteCarlo/Moves/Base.py' 2021-07-14T11:35:01,461 adding 'asap3/MonteCarlo/Moves/Surface.py' 2021-07-14T11:35:01,464 adding 'asap3/MonteCarlo/Moves/__init__.py' 2021-07-14T11:35:01,479 adding 'asap3/MonteCarlo/Moves/Data/__init__.py' 2021-07-14T11:35:01,482 adding 'asap3/MonteCarlo/Moves/Data/fcc.py' 2021-07-14T11:35:01,485 adding 'asap3/MonteCarlo/Moves/Data/symmetry.py' 2021-07-14T11:35:01,507 adding 'asap3/Tools/AsapFileToTrajectory.py' 2021-07-14T11:35:01,510 adding 'asap3/Tools/AtomicEnergies.py' 2021-07-14T11:35:01,513 adding 'asap3/Tools/EMT_two_atom_test.py' 2021-07-14T11:35:01,515 adding 'asap3/Tools/ElasticConstants.py' 2021-07-14T11:35:01,518 adding 'asap3/Tools/MaterialProperties.py' 2021-07-14T11:35:01,537 adding 'asap3/Tools/OptimizationDatabase.py' 2021-07-14T11:35:01,539 adding 'asap3/Tools/SurfaceEnergies.py' 2021-07-14T11:35:01,542 adding 'asap3/Tools/Timing.py' 2021-07-14T11:35:01,557 adding 'asap3/Tools/__init__.py' 2021-07-14T11:35:01,559 adding 'asap3/Tools/niflheim.py' 2021-07-14T11:35:01,563 adding 'asap3/Tools/ParameterOptimization/EMT.py' 2021-07-14T11:35:01,576 adding 'asap3/Tools/ParameterOptimization/GetParameters.py' 2021-07-14T11:35:01,580 adding 'asap3/Tools/ParameterOptimization/Optimization.py' 2021-07-14T11:35:01,583 adding 'asap3/Tools/ParameterOptimization/Performance.py' 2021-07-14T11:35:01,599 adding 'asap3/Tools/ParameterOptimization/Quantities.py' 2021-07-14T11:35:01,607 adding 'asap3/Tools/ParameterOptimization/RGL.py' 2021-07-14T11:35:01,609 adding 'asap3/Tools/ParameterOptimization/Sampling.py' 2021-07-14T11:35:01,625 adding 'asap3/Tools/ParameterOptimization/ScipyFmin.py' 2021-07-14T11:35:01,648 adding 'asap3/Tools/ParameterOptimization/Search.py' 2021-07-14T11:35:01,652 adding 'asap3/Tools/ParameterOptimization/SearchParallel.py' 2021-07-14T11:35:01,667 adding 'asap3/Tools/ParameterOptimization/__init__.py' 2021-07-14T11:35:01,671 adding 'asap3/analysis/__init__.py' 2021-07-14T11:35:01,673 adding 'asap3/analysis/averagepositions.py' 2021-07-14T11:35:01,679 adding 'asap3/analysis/clusterposition.py' 2021-07-14T11:35:01,681 adding 'asap3/analysis/cutcluster.py' 2021-07-14T11:35:01,693 adding 'asap3/analysis/findcluster.py' 2021-07-14T11:35:01,696 adding 'asap3/analysis/localstructure.py' 2021-07-14T11:35:01,699 adding 'asap3/analysis/particle.py' 2021-07-14T11:35:01,703 adding 'asap3/analysis/ptm.py' 2021-07-14T11:35:01,708 adding 'asap3/analysis/rdf.py' 2021-07-14T11:35:01,716 adding 'asap3/io/ReadOldFiles.py' 2021-07-14T11:35:01,721 adding 'asap3/io/__init__.py' 2021-07-14T11:35:01,735 adding 'asap3/io/bundletrajectory.py' 2021-07-14T11:35:01,738 adding 'asap3/io/cpu_setup.py' 2021-07-14T11:35:01,742 adding 'asap3/io/trajectory.py' 2021-07-14T11:35:01,745 adding 'asap3/md/__init__.py' 2021-07-14T11:35:01,753 adding 'asap3/md/langevin.py' 2021-07-14T11:35:01,756 adding 'asap3/md/md.py' 2021-07-14T11:35:01,758 adding 'asap3/md/npt.py' 2021-07-14T11:35:01,777 adding 'asap3/md/nptberendsen.py' 2021-07-14T11:35:01,779 adding 'asap3/md/nvtberendsen.py' 2021-07-14T11:35:01,781 adding 'asap3/md/velocitydistribution.py' 2021-07-14T11:35:01,786 adding 'asap3/md/verlet.py' 2021-07-14T11:35:01,788 adding 'asap3/md/verlet_fast.py' 2021-07-14T11:35:01,797 adding 'asap3/nanoparticle_mc/AdsCalc.py' 2021-07-14T11:35:01,807 adding 'asap3/nanoparticle_mc/Logger.py' 2021-07-14T11:35:01,808 adding 'asap3/nanoparticle_mc/__init__.py' 2021-07-14T11:35:01,811 adding 'asap3/nanoparticle_mc/atommontecarlodata.py' 2021-07-14T11:35:01,818 adding 'asap3/nanoparticle_mc/cluster.py' 2021-07-14T11:35:01,837 adding 'asap3/nanoparticle_mc/clusteratom.py' 2021-07-14T11:35:01,841 adding 'asap3/nanoparticle_mc/langmuirExpression.py' 2021-07-14T11:35:01,843 adding 'asap3/nanoparticle_mc/mc_result.py' 2021-07-14T11:35:01,845 adding 'asap3/nanoparticle_mc/resizecluster.py' 2021-07-14T11:35:01,848 adding 'asap3/nanoparticle_mc/data/__init__.py' 2021-07-14T11:35:01,850 adding 'asap3/nanoparticle_mc/data/au.py' 2021-07-14T11:35:01,867 adding 'asap3/nanoparticle_mc/data/fcc.py' 2021-07-14T11:35:01,869 adding 'asap3/nanoparticle_mc/data/symmetry.py' 2021-07-14T11:35:01,872 adding 'asap3/nanoparticle_mc/montecarlo/__init__.py' 2021-07-14T11:35:01,880 adding 'asap3/nanoparticle_mc/montecarlo/atom.py' 2021-07-14T11:35:01,898 adding 'asap3/nanoparticle_mc/montecarlo/surface.py' 2021-07-14T11:35:01,908 adding 'asap3/optimize/__init__.py' 2021-07-14T11:35:01,910 adding 'asap3/optimize/fire.py' 2021-07-14T11:35:01,912 adding 'asap3/optimize/mdmin.py' 2021-07-14T11:35:01,917 adding 'asap3/optimize/optimize.py' 2021-07-14T11:35:01,920 adding 'asap3/setup/VelocityDistribution.py' 2021-07-14T11:35:01,927 adding 'asap3/setup/__init__.py' 2021-07-14T11:35:01,929 adding 'asap3/setup/dislocation.py' 2021-07-14T11:35:01,932 adding 'asap3/setup/displacementfield.py' 2021-07-14T11:35:01,937 adding 'asap3/setup/multidislocation.py' 2021-07-14T11:35:01,948 adding 'asap3/setup/nanocrystalline/__init__.py' 2021-07-14T11:35:01,950 adding 'asap3/setup/nanocrystalline/dislocated.py' 2021-07-14T11:35:01,953 adding 'asap3/setup/nanocrystalline/energy.py' 2021-07-14T11:35:01,956 adding 'asap3/setup/nanocrystalline/grain_structures.py' 2021-07-14T11:35:01,967 adding 'asap3/setup/nanocrystalline/helpers.py' 2021-07-14T11:35:01,970 adding 'asap3/setup/nanocrystalline/nanocrystalline.py' 2021-07-14T11:35:01,973 adding 'asap3/setup/nanocrystalline/nanocrystalline_orig.py' 2021-07-14T11:35:01,975 adding 'asap3/setup/nanocrystalline/plane_utils.py' 2021-07-14T11:35:01,987 adding 'asap3/setup/nanocrystalline/quat_utils.py' 2021-07-14T11:35:05,915 adding 'asap3-3.11.9.data/scripts/asap-python' 2021-07-14T11:35:06,101 adding 'asap3-3.11.9.data/scripts/asap-qsub' 2021-07-14T11:35:06,104 adding 'asap3-3.11.9.data/scripts/asap-sbatch' 2021-07-14T11:35:06,124 adding 'asap3-3.11.9.dist-info/LICENSE' 2021-07-14T11:35:06,137 adding 'asap3-3.11.9.dist-info/LICENSE.LESSER' 2021-07-14T11:35:06,139 adding 'asap3-3.11.9.dist-info/METADATA' 2021-07-14T11:35:06,141 adding 'asap3-3.11.9.dist-info/WHEEL' 2021-07-14T11:35:06,143 adding 'asap3-3.11.9.dist-info/top_level.txt' 2021-07-14T11:35:06,146 adding 'asap3-3.11.9.dist-info/RECORD' 2021-07-14T11:35:06,309 removing build/bdist.linux-armv7l/wheel 2021-07-14T11:35:06,563 Building wheel for asap3 (setup.py): finished with status 'done' 2021-07-14T11:35:06,683 Created wheel for asap3: filename=asap3-3.11.9-cp39-cp39-linux_armv7l.whl size=8561624 sha256=4dec5c904d8c97d26ed35e3406a16f0bd6cf76e0094839a01cb92adf11a681f0 2021-07-14T11:35:06,684 Stored in directory: /tmp/pip-ephem-wheel-cache-xiqk4le9/wheels/da/cc/3c/f719ab0806362a50055f6561099b67fcd35a32eaee19151cea 2021-07-14T11:35:06,710 Successfully built asap3 2021-07-14T11:35:07,023 Removed build tracker: '/tmp/pip-req-tracker-2u_nge0g'