2021-07-14T12:25:06,414 Created temporary directory: /tmp/pip-ephem-wheel-cache-awjn9dul 2021-07-14T12:25:06,418 Created temporary directory: /tmp/pip-req-tracker-2k978_lq 2021-07-14T12:25:06,418 Initialized build tracking at /tmp/pip-req-tracker-2k978_lq 2021-07-14T12:25:06,419 Created build tracker: /tmp/pip-req-tracker-2k978_lq 2021-07-14T12:25:06,419 Entered build tracker: /tmp/pip-req-tracker-2k978_lq 2021-07-14T12:25:06,421 Created temporary directory: /tmp/pip-wheel-xiewsf_a 2021-07-14T12:25:06,461 1 location(s) to search for versions of denovonear: 2021-07-14T12:25:06,461 * https://pypi.org/simple/denovonear/ 2021-07-14T12:25:06,462 Fetching project page and analyzing links: https://pypi.org/simple/denovonear/ 2021-07-14T12:25:06,464 Getting page https://pypi.org/simple/denovonear/ 2021-07-14T12:25:06,468 Found index url https://pypi.org/simple 2021-07-14T12:25:06,684 Found link https://files.pythonhosted.org/packages/5f/25/aa72bf3769052c8002b830283a8bbacb2cd6e1a2a22c12ee9859022fece0/denovonear-0.5.0.tar.gz#sha256=a321123c913a0bde2c209e574d064032a65007545c9fe8f49ec2f0ea64c91e94 (from https://pypi.org/simple/denovonear/), version: 0.5.0 2021-07-14T12:25:06,688 Found link https://files.pythonhosted.org/packages/0a/62/5608d43d65589a21a7f6b725ec78fcce289da0e725280b7d874f8ddbe3ad/denovonear-0.5.1.tar.gz#sha256=c3c7922d17f3f1b7173077428b0721fb4d0c45fcc242b7d75a2c766c0f9a1853 (from https://pypi.org/simple/denovonear/), version: 0.5.1 2021-07-14T12:25:06,688 Found link https://files.pythonhosted.org/packages/75/b3/535a16bff66cb3cb259afae1d4e1003258b4cb4af7bc81c7b2c76adc6ff2/denovonear-0.5.2.tar.gz#sha256=c949e557ddf9691e6b48f00208f6e37f5d4d249ee8089873c6775fe67d20f661 (from https://pypi.org/simple/denovonear/), version: 0.5.2 2021-07-14T12:25:06,691 Found link https://files.pythonhosted.org/packages/38/f3/215256488f842106a640294ec42b9fe1fe4f7a7e8748b7ff6ac0374a717e/denovonear-0.5.3.tar.gz#sha256=da55e20be91e97f9a1bd83be32284afd89923d54113b00b1fe9295cbcbf662bc (from https://pypi.org/simple/denovonear/), version: 0.5.3 2021-07-14T12:25:06,692 Found link https://files.pythonhosted.org/packages/0a/ec/c9f261454f065ec4284084deffa852884382211030834ea1d29a785892de/denovonear-0.5.4.tar.gz#sha256=fa9333c246d3db5abe98d79be6bd4eeb5354e45f08421bebf7fe4f8c30ff5649 (from https://pypi.org/simple/denovonear/), version: 0.5.4 2021-07-14T12:25:06,695 Found link https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 (from https://pypi.org/simple/denovonear/), version: 0.6.0 2021-07-14T12:25:06,709 Found link https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 (from https://pypi.org/simple/denovonear/), version: 0.6.2 2021-07-14T12:25:06,710 Found link https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe (from https://pypi.org/simple/denovonear/), version: 0.6.3 2021-07-14T12:25:06,710 Found link https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 (from https://pypi.org/simple/denovonear/), version: 0.6.4 2021-07-14T12:25:06,711 Found link https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 (from https://pypi.org/simple/denovonear/), version: 0.7.0 2021-07-14T12:25:06,713 Found link https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.0 2021-07-14T12:25:06,715 Found link https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.1 2021-07-14T12:25:06,716 Found link https://files.pythonhosted.org/packages/ef/b4/e860d4a4ead9864f588d6a02e1d5f5f4faa83f7c90991c5665d0161cbd55/denovonear-0.8.2.tar.gz#sha256=9ad038ee99c90af080e3fe968015ab78f9d869474b65ec95dedcf63cdee8b05f (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.2 2021-07-14T12:25:06,718 Found link https://files.pythonhosted.org/packages/a8/fb/8601613cae1e1165ca87dd3f39442ae6f72768d1854cf05fc91fe54c74e3/denovonear-0.8.4.tar.gz#sha256=f725d7598a6470a5bff613253d1b7ebdf844c0ce592dfe31015e38e530e90be1 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.4 2021-07-14T12:25:06,729 Found link https://files.pythonhosted.org/packages/5e/40/6235d5a69a1954d94ffd5fe8db17ae0825866255cc69b8caf3057df33ec3/denovonear-0.8.5.tar.gz#sha256=dd656b8b43f511e26e701f7301b39f8c151893aab015f1f581ddc0a9a2ae5c13 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.5 2021-07-14T12:25:06,731 Found link https://files.pythonhosted.org/packages/51/a0/1e7699fe5b5a6ab27d2916c14ff76000d8026f85a668b1b50c7b51cdf187/denovonear-0.8.6.tar.gz#sha256=3241bfa633f723687359aa8928e7a68a82d2ffaac6eb6ce090401d9c6357fa2e (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.6 2021-07-14T12:25:06,732 Skipping link: not a file: https://pypi.org/simple/denovonear/ 2021-07-14T12:25:06,777 Given no hashes to check 1 links for project 'denovonear': discarding no candidates 2021-07-14T12:25:06,857 Collecting denovonear==0.7.0 2021-07-14T12:25:06,864 Created temporary directory: /tmp/pip-unpack-kuko5yuv 2021-07-14T12:25:07,277 Downloading denovonear-0.7.0.tar.gz (215 kB) 2021-07-14T12:25:07,616 Added denovonear==0.7.0 from https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 to build tracker '/tmp/pip-req-tracker-2k978_lq' 2021-07-14T12:25:07,617 Running setup.py (path:/tmp/pip-wheel-xiewsf_a/denovonear_c954677483cb406197bc8fddd1687ca2/setup.py) egg_info for package denovonear 2021-07-14T12:25:07,618 Created temporary directory: /tmp/pip-pip-egg-info-pyfb895f 2021-07-14T12:25:07,619 Running command python setup.py egg_info 2021-07-14T12:25:16,459 Compiling denovonear/weights.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-14T12:25:16,460 Compiling denovonear/transcript.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-14T12:25:16,461 Compiling denovonear/site_specific_rates.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-14T12:25:16,461 [1/3] Cythonizing denovonear/site_specific_rates.pyx 2021-07-14T12:25:16,461 [2/3] Cythonizing denovonear/weights.pyx 2021-07-14T12:25:16,461 [3/3] Cythonizing denovonear/transcript.pyx 2021-07-14T12:25:16,700 running egg_info 2021-07-14T12:25:16,704 creating /tmp/pip-pip-egg-info-pyfb895f/denovonear.egg-info 2021-07-14T12:25:16,705 writing /tmp/pip-pip-egg-info-pyfb895f/denovonear.egg-info/PKG-INFO 2021-07-14T12:25:16,709 writing dependency_links to /tmp/pip-pip-egg-info-pyfb895f/denovonear.egg-info/dependency_links.txt 2021-07-14T12:25:16,711 writing entry points to /tmp/pip-pip-egg-info-pyfb895f/denovonear.egg-info/entry_points.txt 2021-07-14T12:25:16,713 writing requirements to /tmp/pip-pip-egg-info-pyfb895f/denovonear.egg-info/requires.txt 2021-07-14T12:25:16,715 writing top-level names to /tmp/pip-pip-egg-info-pyfb895f/denovonear.egg-info/top_level.txt 2021-07-14T12:25:16,717 writing manifest file '/tmp/pip-pip-egg-info-pyfb895f/denovonear.egg-info/SOURCES.txt' 2021-07-14T12:25:16,927 reading manifest file '/tmp/pip-pip-egg-info-pyfb895f/denovonear.egg-info/SOURCES.txt' 2021-07-14T12:25:16,929 reading manifest template 'MANIFEST.in' 2021-07-14T12:25:16,949 writing manifest file '/tmp/pip-pip-egg-info-pyfb895f/denovonear.egg-info/SOURCES.txt' 2021-07-14T12:25:17,251 Source in /tmp/pip-wheel-xiewsf_a/denovonear_c954677483cb406197bc8fddd1687ca2 has version 0.7.0, which satisfies requirement denovonear==0.7.0 from https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 2021-07-14T12:25:17,253 Removed denovonear==0.7.0 from https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 from build tracker '/tmp/pip-req-tracker-2k978_lq' 2021-07-14T12:25:17,261 Created temporary directory: /tmp/pip-unpack-py1jpa4v 2021-07-14T12:25:17,262 Building wheels for collected packages: denovonear 2021-07-14T12:25:17,268 Created temporary directory: /tmp/pip-wheel-8p3bcvwp 2021-07-14T12:25:17,269 Building wheel for denovonear (setup.py): started 2021-07-14T12:25:17,269 Destination directory: /tmp/pip-wheel-8p3bcvwp 2021-07-14T12:25:17,270 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xiewsf_a/denovonear_c954677483cb406197bc8fddd1687ca2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xiewsf_a/denovonear_c954677483cb406197bc8fddd1687ca2/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8p3bcvwp 2021-07-14T12:25:19,648 running bdist_wheel 2021-07-14T12:25:19,655 running build 2021-07-14T12:25:19,656 running build_py 2021-07-14T12:25:19,860 creating build 2021-07-14T12:25:19,861 creating build/lib.linux-armv7l-3.9 2021-07-14T12:25:19,862 creating build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,864 copying denovonear/ensembl_cache.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,867 copying denovonear/load_mutation_rates.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,870 copying denovonear/log_transform_rates.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,873 copying denovonear/cluster_test.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,877 copying denovonear/frameshift_rate.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,880 copying denovonear/load_de_novos.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,883 copying denovonear/load_gene.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,887 copying denovonear/__init__.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,890 copying denovonear/ensembl_requester.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,894 copying denovonear/__main__.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,898 copying denovonear/simulate.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,901 creating build/lib.linux-armv7l-3.9/denovonear/data 2021-07-14T12:25:19,902 copying denovonear/data/rates.txt -> build/lib.linux-armv7l-3.9/denovonear/data 2021-07-14T12:25:19,906 copying denovonear/weights.pxd -> build/lib.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,910 running build_ext 2021-07-14T12:25:19,918 building 'denovonear.weights' extension 2021-07-14T12:25:19,919 creating build/temp.linux-armv7l-3.9 2021-07-14T12:25:19,919 creating build/temp.linux-armv7l-3.9/denovonear 2021-07-14T12:25:19,921 creating build/temp.linux-armv7l-3.9/src 2021-07-14T12:25:19,922 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/weights.cpp -o build/temp.linux-armv7l-3.9/denovonear/weights.o -std=c++11 2021-07-14T12:25:32,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/simulate.cpp -o build/temp.linux-armv7l-3.9/src/simulate.o -std=c++11 2021-07-14T12:25:35,729 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-14T12:25:35,729 from /usr/include/c++/10/algorithm:62, 2021-07-14T12:25:35,730 from src/simulate.cpp:2: 2021-07-14T12:25:35,730 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-14T12:25:35,731 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:35,731 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-14T12:25:35,731 | ^~~~~~~~~~~~~ 2021-07-14T12:25:35,848 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T12:25:35,849 from src/simulate.cpp:2: 2021-07-14T12:25:35,849 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-14T12:25:35,850 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:35,850 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-14T12:25:35,850 | ^~~~~~~~~~~~~~~~ 2021-07-14T12:25:35,850 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:35,851 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:35,973 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-14T12:25:35,973 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:35,973 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-14T12:25:35,974 | ^~~~~~~~~~~~~~~~ 2021-07-14T12:25:35,974 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:35,975 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:35,975 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:35,975 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-14T12:25:35,976 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:36,373 In file included from /usr/include/c++/10/vector:72, 2021-07-14T12:25:36,373 from src/simulate.cpp:4: 2021-07-14T12:25:36,374 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T12:25:36,374 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T12:25:36,374 426 | vector<_Tp, _Alloc>:: 2021-07-14T12:25:36,375 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:36,510 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector _simulate_distribution(Chooser&, int, int)’: 2021-07-14T12:25:36,511 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:36,511 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T12:25:36,511 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:36,512 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T12:25:36,512 from src/simulate.cpp:2: 2021-07-14T12:25:36,512 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:36,513 1974 | std::__introsort_loop(__first, __last, 2021-07-14T12:25:36,513 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T12:25:36,513 1975 | std::__lg(__last - __first) * 2, 2021-07-14T12:25:36,513 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:36,514 1976 | __comp); 2021-07-14T12:25:36,514 | ~~~~~~~ 2021-07-14T12:25:36,514 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:36,515 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-14T12:25:36,515 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:36,515 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:36,515 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-14T12:25:36,516 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:37,312 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11 2021-07-14T12:25:40,846 In file included from /usr/include/c++/10/vector:72, 2021-07-14T12:25:40,846 from /usr/include/c++/10/bits/random.h:34, 2021-07-14T12:25:40,847 from /usr/include/c++/10/random:49, 2021-07-14T12:25:40,847 from src/weighted_choice.cpp:1: 2021-07-14T12:25:40,847 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T12:25:40,848 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T12:25:40,848 426 | vector<_Tp, _Alloc>:: 2021-07-14T12:25:40,849 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:40,999 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-14T12:25:41,000 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T12:25:41,219 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-14T12:25:41,219 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T12:25:41,568 In file included from /usr/include/c++/10/vector:67, 2021-07-14T12:25:41,569 from /usr/include/c++/10/bits/random.h:34, 2021-07-14T12:25:41,569 from /usr/include/c++/10/random:49, 2021-07-14T12:25:41,570 from src/weighted_choice.cpp:1: 2021-07-14T12:25:41,570 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’: 2021-07-14T12:25:41,570 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:41,571 1198 | _M_realloc_insert(end(), __x); 2021-07-14T12:25:41,571 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T12:25:41,581 In file included from /usr/include/c++/10/vector:72, 2021-07-14T12:25:41,581 from /usr/include/c++/10/bits/random.h:34, 2021-07-14T12:25:41,582 from /usr/include/c++/10/random:49, 2021-07-14T12:25:41,582 from src/weighted_choice.cpp:1: 2021-07-14T12:25:41,582 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:41,583 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T12:25:41,583 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:41,806 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T12:25:41,807 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T12:25:41,807 426 | vector<_Tp, _Alloc>:: 2021-07-14T12:25:41,808 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:41,983 /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’: 2021-07-14T12:25:41,983 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:41,983 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T12:25:41,984 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T12:25:41,985 In file included from /usr/include/c++/10/vector:67, 2021-07-14T12:25:41,985 from /usr/include/c++/10/bits/random.h:34, 2021-07-14T12:25:41,985 from /usr/include/c++/10/random:49, 2021-07-14T12:25:41,986 from src/weighted_choice.cpp:1: 2021-07-14T12:25:41,986 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:25:41,986 1198 | _M_realloc_insert(end(), __x); 2021-07-14T12:25:41,987 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T12:25:42,547 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/weights.o build/temp.linux-armv7l-3.9/src/simulate.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so 2021-07-14T12:25:43,052 building 'denovonear.transcript' extension 2021-07-14T12:25:43,052 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/transcript.cpp -o build/temp.linux-armv7l-3.9/denovonear/transcript.o -std=c++11 2021-07-14T12:26:18,130 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11 2021-07-14T12:26:34,508 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/transcript.o build/temp.linux-armv7l-3.9/src/tx.o -o build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so 2021-07-14T12:26:35,085 building 'denovonear.site_specific_rates' extension 2021-07-14T12:26:35,086 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/site_specific_rates.cpp -o build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o -std=c++11 2021-07-14T12:26:56,961 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/site_rates.cpp -o build/temp.linux-armv7l-3.9/src/site_rates.o -std=c++11 2021-07-14T12:27:07,360 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11 2021-07-14T12:27:23,299 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11 2021-07-14T12:27:26,660 In file included from /usr/include/c++/10/vector:72, 2021-07-14T12:27:26,660 from /usr/include/c++/10/bits/random.h:34, 2021-07-14T12:27:26,661 from /usr/include/c++/10/random:49, 2021-07-14T12:27:26,661 from src/weighted_choice.cpp:1: 2021-07-14T12:27:26,661 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T12:27:26,662 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T12:27:26,662 426 | vector<_Tp, _Alloc>:: 2021-07-14T12:27:26,662 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T12:27:26,860 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-14T12:27:26,861 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T12:27:27,116 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-14T12:27:27,117 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T12:27:27,331 In file included from /usr/include/c++/10/vector:67, 2021-07-14T12:27:27,331 from /usr/include/c++/10/bits/random.h:34, 2021-07-14T12:27:27,332 from /usr/include/c++/10/random:49, 2021-07-14T12:27:27,332 from src/weighted_choice.cpp:1: 2021-07-14T12:27:27,332 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’: 2021-07-14T12:27:27,333 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:27:27,333 1198 | _M_realloc_insert(end(), __x); 2021-07-14T12:27:27,334 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T12:27:27,334 In file included from /usr/include/c++/10/vector:72, 2021-07-14T12:27:27,335 from /usr/include/c++/10/bits/random.h:34, 2021-07-14T12:27:27,335 from /usr/include/c++/10/random:49, 2021-07-14T12:27:27,335 from src/weighted_choice.cpp:1: 2021-07-14T12:27:27,335 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:27:27,336 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T12:27:27,336 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T12:27:27,568 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T12:27:27,568 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T12:27:27,569 426 | vector<_Tp, _Alloc>:: 2021-07-14T12:27:27,569 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T12:27:27,643 /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’: 2021-07-14T12:27:27,643 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:27:27,644 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T12:27:27,644 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T12:27:27,645 In file included from /usr/include/c++/10/vector:67, 2021-07-14T12:27:27,645 from /usr/include/c++/10/bits/random.h:34, 2021-07-14T12:27:27,646 from /usr/include/c++/10/random:49, 2021-07-14T12:27:27,646 from src/weighted_choice.cpp:1: 2021-07-14T12:27:27,646 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T12:27:27,647 1198 | _M_realloc_insert(end(), __x); 2021-07-14T12:27:27,647 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T12:27:28,157 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o build/temp.linux-armv7l-3.9/src/site_rates.o build/temp.linux-armv7l-3.9/src/tx.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so 2021-07-14T12:27:28,814 installing to build/bdist.linux-armv7l/wheel 2021-07-14T12:27:28,814 running install 2021-07-14T12:27:28,817 running install_lib 2021-07-14T12:27:28,823 creating build/bdist.linux-armv7l 2021-07-14T12:27:28,824 creating build/bdist.linux-armv7l/wheel 2021-07-14T12:27:28,828 creating build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,830 copying build/lib.linux-armv7l-3.9/denovonear/weights.pxd -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,833 copying build/lib.linux-armv7l-3.9/denovonear/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,837 copying build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,861 copying build/lib.linux-armv7l-3.9/denovonear/load_mutation_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,866 creating build/bdist.linux-armv7l/wheel/denovonear/data 2021-07-14T12:27:28,868 copying build/lib.linux-armv7l-3.9/denovonear/data/rates.txt -> build/bdist.linux-armv7l/wheel/denovonear/data 2021-07-14T12:27:28,873 copying build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,955 copying build/lib.linux-armv7l-3.9/denovonear/log_transform_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,957 copying build/lib.linux-armv7l-3.9/denovonear/cluster_test.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,961 copying build/lib.linux-armv7l-3.9/denovonear/frameshift_rate.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,963 copying build/lib.linux-armv7l-3.9/denovonear/load_de_novos.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,966 copying build/lib.linux-armv7l-3.9/denovonear/load_gene.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,969 copying build/lib.linux-armv7l-3.9/denovonear/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,972 copying build/lib.linux-armv7l-3.9/denovonear/ensembl_requester.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:28,975 copying build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:29,042 copying build/lib.linux-armv7l-3.9/denovonear/__main__.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:29,046 copying build/lib.linux-armv7l-3.9/denovonear/simulate.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-14T12:27:29,050 running install_egg_info 2021-07-14T12:27:29,093 running egg_info 2021-07-14T12:27:29,094 writing denovonear.egg-info/PKG-INFO 2021-07-14T12:27:29,097 writing dependency_links to denovonear.egg-info/dependency_links.txt 2021-07-14T12:27:29,101 writing entry points to denovonear.egg-info/entry_points.txt 2021-07-14T12:27:29,103 writing requirements to denovonear.egg-info/requires.txt 2021-07-14T12:27:29,105 writing top-level names to denovonear.egg-info/top_level.txt 2021-07-14T12:27:29,119 reading manifest file 'denovonear.egg-info/SOURCES.txt' 2021-07-14T12:27:29,131 reading manifest template 'MANIFEST.in' 2021-07-14T12:27:29,149 writing manifest file 'denovonear.egg-info/SOURCES.txt' 2021-07-14T12:27:29,151 Copying denovonear.egg-info to build/bdist.linux-armv7l/wheel/denovonear-0.7.0-py3.9.egg-info 2021-07-14T12:27:29,176 running install_scripts 2021-07-14T12:27:29,289 creating build/bdist.linux-armv7l/wheel/denovonear-0.7.0.dist-info/WHEEL 2021-07-14T12:27:29,293 creating '/tmp/pip-wheel-8p3bcvwp/denovonear-0.7.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T12:27:29,297 adding 'denovonear/__init__.py' 2021-07-14T12:27:29,300 adding 'denovonear/__main__.py' 2021-07-14T12:27:29,302 adding 'denovonear/cluster_test.py' 2021-07-14T12:27:29,304 adding 'denovonear/ensembl_cache.py' 2021-07-14T12:27:29,307 adding 'denovonear/ensembl_requester.py' 2021-07-14T12:27:29,310 adding 'denovonear/frameshift_rate.py' 2021-07-14T12:27:29,312 adding 'denovonear/load_de_novos.py' 2021-07-14T12:27:29,314 adding 'denovonear/load_gene.py' 2021-07-14T12:27:29,316 adding 'denovonear/load_mutation_rates.py' 2021-07-14T12:27:29,318 adding 'denovonear/log_transform_rates.py' 2021-07-14T12:27:29,321 adding 'denovonear/simulate.py' 2021-07-14T12:27:30,160 adding 'denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T12:27:30,942 adding 'denovonear/transcript.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T12:27:31,289 adding 'denovonear/weights.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T12:27:31,310 adding 'denovonear/weights.pxd' 2021-07-14T12:27:31,313 adding 'denovonear/data/rates.txt' 2021-07-14T12:27:31,317 adding 'denovonear-0.7.0.dist-info/METADATA' 2021-07-14T12:27:31,319 adding 'denovonear-0.7.0.dist-info/WHEEL' 2021-07-14T12:27:31,320 adding 'denovonear-0.7.0.dist-info/entry_points.txt' 2021-07-14T12:27:31,322 adding 'denovonear-0.7.0.dist-info/top_level.txt' 2021-07-14T12:27:31,323 adding 'denovonear-0.7.0.dist-info/RECORD' 2021-07-14T12:27:31,362 removing build/bdist.linux-armv7l/wheel 2021-07-14T12:27:31,565 Building wheel for denovonear (setup.py): finished with status 'done' 2021-07-14T12:27:31,599 Created wheel for denovonear: filename=denovonear-0.7.0-cp39-cp39-linux_armv7l.whl size=2267938 sha256=b65ede2ec05291d79b61d6e5154898671c93dfeaeb019794c083dbeeafe07767 2021-07-14T12:27:31,600 Stored in directory: /tmp/pip-ephem-wheel-cache-awjn9dul/wheels/ed/f6/7b/d11ff4379879bb526dc7b9aca5000be19f01fdd7d319d72d59 2021-07-14T12:27:31,617 Successfully built denovonear 2021-07-14T12:27:31,709 Removed build tracker: '/tmp/pip-req-tracker-2k978_lq'