2021-07-14T15:27:40,026 Created temporary directory: /tmp/pip-ephem-wheel-cache-u6x0cdjz
2021-07-14T15:27:40,029 Created temporary directory: /tmp/pip-req-tracker-entwtgye
2021-07-14T15:27:40,029 Initialized build tracking at /tmp/pip-req-tracker-entwtgye
2021-07-14T15:27:40,029 Created build tracker: /tmp/pip-req-tracker-entwtgye
2021-07-14T15:27:40,029 Entered build tracker: /tmp/pip-req-tracker-entwtgye
2021-07-14T15:27:40,030 Created temporary directory: /tmp/pip-wheel-4yy0o9he
2021-07-14T15:27:40,059 1 location(s) to search for versions of hits:
2021-07-14T15:27:40,059 * https://pypi.org/simple/hits/
2021-07-14T15:27:40,060 Fetching project page and analyzing links: https://pypi.org/simple/hits/
2021-07-14T15:27:40,060 Getting page https://pypi.org/simple/hits/
2021-07-14T15:27:40,062 Found index url https://pypi.org/simple
2021-07-14T15:27:40,152   Found link https://files.pythonhosted.org/packages/bd/a4/dab4eb36d5c301d6f60030768d14deae128e5baa9d6344eda764825d5ab7/hits-0.0.2.tar.gz#sha256=c290e0adae5371b003d2b222fe20a107f5e48fee64e3ff34207020df27a2b640 (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.2
2021-07-14T15:27:40,152   Found link https://files.pythonhosted.org/packages/4f/da/e8976e983ced405ede20b732db2cc427af7c93d14dcaf62147303742d7ec/hits-0.0.4.tar.gz#sha256=c42363838f385054dec09818e867cecf074e844d508d0ecdb24a35e33e025c37 (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.4
2021-07-14T15:27:40,153   Found link https://files.pythonhosted.org/packages/3b/b9/f2184537f182cb3456dbe14209b08019a80f064c5ec76ca0e29c01e85b45/hits-0.0.5.tar.gz#sha256=2e28072c28c056e43576bd5c8161aa94b0358d81a01795f8d1f9dd75763f0d92 (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.5
2021-07-14T15:27:40,153   Found link https://files.pythonhosted.org/packages/bc/d3/e1c183519ed10a4c5aecb860080c4d0178419ded77dbfd10b249f991dbca/hits-0.0.6.tar.gz#sha256=5ded6559414f41a88a4e5ff6e9b3b333f6c0257717c083c85a6b5bec6322101f (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.6
2021-07-14T15:27:40,154   Found link https://files.pythonhosted.org/packages/36/12/1e518a921f843e31b49c74080310bd0a99d4bc5701bb9c26e74e4d7e293d/hits-0.0.7.tar.gz#sha256=289008535d0c7dfc0690f26d0b798fc015f9d202a942176f56292851ad9667a7 (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.7
2021-07-14T15:27:40,155   Found link https://files.pythonhosted.org/packages/16/eb/7875f9d6728a25ea1ebf15e1b1fd7f17956b6bd984247a9402d3a3354530/hits-0.1.tar.gz#sha256=d522045c7c5f7bb68645c99bf5fde7601ecfb8f13d7c0d94090a5fd84bb86feb (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.1
2021-07-14T15:27:40,155 Skipping link: not a file: https://pypi.org/simple/hits/
2021-07-14T15:27:40,173 Given no hashes to check 1 links for project 'hits': discarding no candidates
2021-07-14T15:27:40,192 Collecting hits==0.0.4
2021-07-14T15:27:40,194   Created temporary directory: /tmp/pip-unpack-j13h80xn
2021-07-14T15:27:40,791   Downloading hits-0.0.4.tar.gz (1.1 MB)
2021-07-14T15:27:41,207   Added hits==0.0.4 from https://files.pythonhosted.org/packages/4f/da/e8976e983ced405ede20b732db2cc427af7c93d14dcaf62147303742d7ec/hits-0.0.4.tar.gz#sha256=c42363838f385054dec09818e867cecf074e844d508d0ecdb24a35e33e025c37 to build tracker '/tmp/pip-req-tracker-entwtgye'
2021-07-14T15:27:41,209     Running setup.py (path:/tmp/pip-wheel-4yy0o9he/hits_e2b0c4122de04358b32836c9cec63327/setup.py) egg_info for package hits
2021-07-14T15:27:41,209     Created temporary directory: /tmp/pip-pip-egg-info-5c396me_
2021-07-14T15:27:41,210     Running command python setup.py egg_info
2021-07-14T15:27:42,322     running egg_info
2021-07-14T15:27:42,324     creating /tmp/pip-pip-egg-info-5c396me_/hits.egg-info
2021-07-14T15:27:42,326     writing /tmp/pip-pip-egg-info-5c396me_/hits.egg-info/PKG-INFO
2021-07-14T15:27:42,327     writing dependency_links to /tmp/pip-pip-egg-info-5c396me_/hits.egg-info/dependency_links.txt
2021-07-14T15:27:42,329     writing requirements to /tmp/pip-pip-egg-info-5c396me_/hits.egg-info/requires.txt
2021-07-14T15:27:42,330     writing top-level names to /tmp/pip-pip-egg-info-5c396me_/hits.egg-info/top_level.txt
2021-07-14T15:27:42,332     writing manifest file '/tmp/pip-pip-egg-info-5c396me_/hits.egg-info/SOURCES.txt'
2021-07-14T15:27:42,653     reading manifest file '/tmp/pip-pip-egg-info-5c396me_/hits.egg-info/SOURCES.txt'
2021-07-14T15:27:42,658     writing manifest file '/tmp/pip-pip-egg-info-5c396me_/hits.egg-info/SOURCES.txt'
2021-07-14T15:27:42,731   Source in /tmp/pip-wheel-4yy0o9he/hits_e2b0c4122de04358b32836c9cec63327 has version 0.0.4, which satisfies requirement hits==0.0.4 from https://files.pythonhosted.org/packages/4f/da/e8976e983ced405ede20b732db2cc427af7c93d14dcaf62147303742d7ec/hits-0.0.4.tar.gz#sha256=c42363838f385054dec09818e867cecf074e844d508d0ecdb24a35e33e025c37
2021-07-14T15:27:42,732   Removed hits==0.0.4 from https://files.pythonhosted.org/packages/4f/da/e8976e983ced405ede20b732db2cc427af7c93d14dcaf62147303742d7ec/hits-0.0.4.tar.gz#sha256=c42363838f385054dec09818e867cecf074e844d508d0ecdb24a35e33e025c37 from build tracker '/tmp/pip-req-tracker-entwtgye'
2021-07-14T15:27:42,738 Created temporary directory: /tmp/pip-unpack-2572ljji
2021-07-14T15:27:42,738 Building wheels for collected packages: hits
2021-07-14T15:27:42,742   Created temporary directory: /tmp/pip-wheel-gm4yk8ej
2021-07-14T15:27:42,743   Building wheel for hits (setup.py): started
2021-07-14T15:27:42,743   Destination directory: /tmp/pip-wheel-gm4yk8ej
2021-07-14T15:27:42,743   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4yy0o9he/hits_e2b0c4122de04358b32836c9cec63327/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4yy0o9he/hits_e2b0c4122de04358b32836c9cec63327/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gm4yk8ej
2021-07-14T15:27:43,916   running bdist_wheel
2021-07-14T15:27:44,072   running build
2021-07-14T15:27:44,073   running build_py
2021-07-14T15:27:44,216   creating build
2021-07-14T15:27:44,216   creating build/lib.linux-armv7l-3.9
2021-07-14T15:27:44,217   creating build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,218   copying hits/ipython.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,220   copying hits/utilities.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,222   copying hits/sw.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,225   copying hits/external_sort.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,227   copying hits/adapters.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,229   copying hits/fasta.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,231   copying hits/visualize_structure.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,234   copying hits/fastq.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,236   copying hits/gff.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,239   copying hits/__init__.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,240   copying hits/annotation.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,242   copying hits/paired_end.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,245   copying hits/mapping_tools.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,248   copying hits/interval.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,250   copying hits/variants.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,253   copying hits/genomes.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,256   copying hits/genetic_code.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,258   copying hits/sam.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,262   copying hits/intensities_illumina.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T15:27:44,265   creating build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T15:27:44,266   copying hits/visualize/gels.py -> build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T15:27:44,270   copying hits/visualize/define_igv_colors.py -> build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T15:27:44,272   copying hits/visualize/fastq.py -> build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T15:27:44,274   copying hits/visualize/__init__.py -> build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T15:27:44,278   creating build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,279   copying hits/visualize/interactive/pc.py -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,282   copying hits/visualize/interactive/__init__.py -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,286   copying hits/visualize/interactive/external_coffeescript.py -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,294   copying hits/visualize/interactive/screen_errorbars_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,296   copying hits/visualize/interactive/scatter_subset_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,299   copying hits/visualize/interactive/scatter_label_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,301   copying hits/visualize/interactive/scatter_label.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,304   copying hits/visualize/interactive/scatter_search.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,306   copying hits/visualize/interactive/scatter_selection.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,309   copying hits/visualize/interactive/scatter_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,311   copying hits/visualize/interactive/pc_clear.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,313   copying hits/visualize/interactive/pc_box_select.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,316   copying hits/visualize/interactive/scatter_alpha.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,318   copying hits/visualize/interactive/scatter_size_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,320   copying hits/visualize/interactive/scatter_heatmap.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,322   copying hits/visualize/interactive/scatter_range.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,324   copying hits/visualize/interactive/scatter_zoom_to_data.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,327   copying hits/visualize/interactive/scatter_size.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,329   copying hits/visualize/interactive/screen_search.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,331   copying hits/visualize/interactive/screen_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,334   copying hits/visualize/interactive/scatter_case_sensitive.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,336   copying hits/visualize/interactive/scatter_save_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,338   copying hits/visualize/interactive/screen_scatter_selection.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,340   copying hits/visualize/interactive/screen_significance_filter.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,343   copying hits/visualize/interactive/pc_search.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,345   copying hits/visualize/interactive/scatter_grid.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,347   copying hits/visualize/interactive/pc_hover.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,350   copying hits/visualize/interactive/scatter_two_level_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,352   copying hits/visualize/interactive/scatter_annotation_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,354   copying hits/visualize/interactive/pc_selection.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,356   copying hits/visualize/interactive/scatter_color.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,358   copying hits/visualize/interactive/scatter_cluster_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,361   copying hits/visualize/interactive/screen_range.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,363   copying hits/visualize/interactive/example_df.txt -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T15:27:44,430   running build_ext
2021-07-14T15:27:44,435   cythoning hits/adapters_cython.pyx to hits/adapters_cython.c
2021-07-14T15:27:45,286   cythoning hits/fastq_cython.pyx to hits/fastq_cython.c
2021-07-14T15:27:52,125   cythoning hits/sw_cython.pyx to hits/sw_cython.c
2021-07-14T15:27:57,784   building 'adapters_cython' extension
2021-07-14T15:27:57,785   creating build/temp.linux-armv7l-3.9
2021-07-14T15:27:57,785   creating build/temp.linux-armv7l-3.9/hits
2021-07-14T15:27:57,786   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c hits/adapters_cython.c -o build/temp.linux-armv7l-3.9/hits/adapters_cython.o
2021-07-14T15:27:59,618   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/hits/adapters_cython.o -o build/lib.linux-armv7l-3.9/hits/adapters_cython.cpython-39-arm-linux-gnueabihf.so
2021-07-14T15:27:59,736   building 'fastq_cython' extension
2021-07-14T15:27:59,736   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c hits/fastq_cython.c -o build/temp.linux-armv7l-3.9/hits/fastq_cython.o
2021-07-14T15:28:00,126   hits/fastq_cython.c: In function ‘__pyx_pf_12fastq_cython_2process_read’:
2021-07-14T15:28:00,127   hits/fastq_cython.c:2645:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-14T15:28:00,127    2645 |     __pyx_t_6 = ((__pyx_v_q >= __pyx_v_min_q) != 0);
2021-07-14T15:28:00,127         |                             ^~
2021-07-14T15:28:00,132   hits/fastq_cython.c: In function ‘__pyx_pf_12fastq_cython_4process_Alignment’:
2021-07-14T15:28:00,133   hits/fastq_cython.c:2919:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-14T15:28:00,133    2919 |     __pyx_t_6 = ((__pyx_v_q >= __pyx_v_min_q) != 0);
2021-07-14T15:28:00,133         |                             ^~
2021-07-14T15:28:12,027   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/hits/fastq_cython.o -o build/lib.linux-armv7l-3.9/hits/fastq_cython.cpython-39-arm-linux-gnueabihf.so
2021-07-14T15:28:12,190   building 'sw_cython' extension
2021-07-14T15:28:12,190   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c hits/sw_cython.c -o build/temp.linux-armv7l-3.9/hits/sw_cython.o
2021-07-14T15:28:12,592   hits/sw_cython.c: In function ‘__pyx_pf_9sw_cython_generate_matrices’:
2021-07-14T15:28:12,593   hits/sw_cython.c:2660:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2021-07-14T15:28:12,593    2660 |     for (__pyx_t_11 = 1; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
2021-07-14T15:28:12,594         |                                     ^
2021-07-14T15:28:12,597   hits/sw_cython.c:2721:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2021-07-14T15:28:12,597    2721 |     for (__pyx_t_11 = 1; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
2021-07-14T15:28:12,597         |                                     ^
2021-07-14T15:28:12,601   hits/sw_cython.c:2796:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2021-07-14T15:28:12,601    2796 |   for (__pyx_t_11 = 1; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
2021-07-14T15:28:12,601         |                                   ^
2021-07-14T15:28:12,602   hits/sw_cython.c:2809:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2021-07-14T15:28:12,602    2809 |     for (__pyx_t_18 = 1; __pyx_t_18 < __pyx_t_17; __pyx_t_18+=1) {
2021-07-14T15:28:12,602         |                                     ^
2021-07-14T15:28:12,654   hits/sw_cython.c: In function ‘__pyx_pf_9sw_cython_4extend_perfect_seed’:
2021-07-14T15:28:12,656   hits/sw_cython.c:4865:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-14T15:28:12,656    4865 |     __pyx_t_2 = ((__pyx_v_query_end < __pyx_t_3) != 0);
2021-07-14T15:28:12,656         |                                     ^
2021-07-14T15:28:12,658   hits/sw_cython.c:4872:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-14T15:28:12,658    4872 |     __pyx_t_2 = ((__pyx_v_target_end < __pyx_t_3) != 0);
2021-07-14T15:28:12,658         |                                      ^
2021-07-14T15:28:12,667   hits/sw_cython.c: In function ‘__pyx_pf_9sw_cython_6extend_perfect_seed_with_one_nt_deletion’:
2021-07-14T15:28:12,669   hits/sw_cython.c:5187:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-14T15:28:12,669    5187 |     __pyx_t_2 = ((__pyx_v_query_end < __pyx_t_4) != 0);
2021-07-14T15:28:12,669         |                                     ^
2021-07-14T15:28:12,672   hits/sw_cython.c:5194:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-14T15:28:12,672    5194 |     __pyx_t_2 = ((__pyx_v_target_end < __pyx_t_4) != 0);
2021-07-14T15:28:12,672         |                                      ^
2021-07-14T15:28:26,931   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/hits/sw_cython.o -o build/lib.linux-armv7l-3.9/hits/sw_cython.cpython-39-arm-linux-gnueabihf.so
2021-07-14T15:28:27,128   installing to build/bdist.linux-armv7l/wheel
2021-07-14T15:28:27,128   running install
2021-07-14T15:28:27,130   running install_lib
2021-07-14T15:28:27,134   creating build/bdist.linux-armv7l
2021-07-14T15:28:27,134   creating build/bdist.linux-armv7l/wheel
2021-07-14T15:28:27,136   creating build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,137   copying build/lib.linux-armv7l-3.9/hits/adapters_cython.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,144   copying build/lib.linux-armv7l-3.9/hits/ipython.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,145   copying build/lib.linux-armv7l-3.9/hits/utilities.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,148   copying build/lib.linux-armv7l-3.9/hits/sw.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,150   copying build/lib.linux-armv7l-3.9/hits/external_sort.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,152   copying build/lib.linux-armv7l-3.9/hits/adapters.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,154   copying build/lib.linux-armv7l-3.9/hits/fasta.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,156   copying build/lib.linux-armv7l-3.9/hits/visualize_structure.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,159   copying build/lib.linux-armv7l-3.9/hits/fastq.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,162   copying build/lib.linux-armv7l-3.9/hits/gff.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,164   copying build/lib.linux-armv7l-3.9/hits/__init__.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,165   copying build/lib.linux-armv7l-3.9/hits/annotation.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,168   creating build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T15:28:27,169   copying build/lib.linux-armv7l-3.9/hits/visualize/gels.py -> build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T15:28:27,172   copying build/lib.linux-armv7l-3.9/hits/visualize/define_igv_colors.py -> build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T15:28:27,174   copying build/lib.linux-armv7l-3.9/hits/visualize/fastq.py -> build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T15:28:27,176   copying build/lib.linux-armv7l-3.9/hits/visualize/__init__.py -> build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T15:28:27,180   creating build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,181   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_errorbars_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,183   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_subset_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,184   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_label_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,186   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_label.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,188   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_search.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,190   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_selection.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,192   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,193   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_clear.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,195   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc.py -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,197   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_box_select.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,199   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_alpha.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,201   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_size_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,203   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_heatmap.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,205   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/__init__.py -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,209   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/example_df.txt -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,270   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_range.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,272   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/external_coffeescript.py -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,273   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_zoom_to_data.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,275   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_size.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,277   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_search.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,278   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,280   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_case_sensitive.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,281   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_save_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,283   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_scatter_selection.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,285   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_significance_filter.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,287   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_search.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,289   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_grid.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,291   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_hover.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,293   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_two_level_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,295   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_annotation_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,297   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_selection.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,299   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_color.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,302   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_cluster_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,304   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_range.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T15:28:27,306   copying build/lib.linux-armv7l-3.9/hits/paired_end.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,309   copying build/lib.linux-armv7l-3.9/hits/mapping_tools.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,312   copying build/lib.linux-armv7l-3.9/hits/interval.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,315   copying build/lib.linux-armv7l-3.9/hits/variants.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,318   copying build/lib.linux-armv7l-3.9/hits/genomes.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,320   copying build/lib.linux-armv7l-3.9/hits/sw_cython.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,346   copying build/lib.linux-armv7l-3.9/hits/genetic_code.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,348   copying build/lib.linux-armv7l-3.9/hits/fastq_cython.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,365   copying build/lib.linux-armv7l-3.9/hits/sam.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,368   copying build/lib.linux-armv7l-3.9/hits/intensities_illumina.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T15:28:27,370   running install_egg_info
2021-07-14T15:28:27,395   running egg_info
2021-07-14T15:28:27,396   writing hits.egg-info/PKG-INFO
2021-07-14T15:28:27,398   writing dependency_links to hits.egg-info/dependency_links.txt
2021-07-14T15:28:27,400   writing requirements to hits.egg-info/requires.txt
2021-07-14T15:28:27,401   writing top-level names to hits.egg-info/top_level.txt
2021-07-14T15:28:27,415   reading manifest file 'hits.egg-info/SOURCES.txt'
2021-07-14T15:28:27,423   writing manifest file 'hits.egg-info/SOURCES.txt'
2021-07-14T15:28:27,424   Copying hits.egg-info to build/bdist.linux-armv7l/wheel/hits-0.0.4-py3.9.egg-info
2021-07-14T15:28:27,435   running install_scripts
2021-07-14T15:28:27,482   creating build/bdist.linux-armv7l/wheel/hits-0.0.4.dist-info/WHEEL
2021-07-14T15:28:27,485   creating '/tmp/pip-wheel-gm4yk8ej/hits-0.0.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T15:28:27,488   adding 'hits/__init__.py'
2021-07-14T15:28:27,489   adding 'hits/adapters.py'
2021-07-14T15:28:27,514   adding 'hits/adapters_cython.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T15:28:27,516   adding 'hits/annotation.py'
2021-07-14T15:28:27,517   adding 'hits/external_sort.py'
2021-07-14T15:28:27,519   adding 'hits/fasta.py'
2021-07-14T15:28:27,521   adding 'hits/fastq.py'
2021-07-14T15:28:27,690   adding 'hits/fastq_cython.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T15:28:27,698   adding 'hits/genetic_code.py'
2021-07-14T15:28:27,699   adding 'hits/genomes.py'
2021-07-14T15:28:27,701   adding 'hits/gff.py'
2021-07-14T15:28:27,703   adding 'hits/intensities_illumina.py'
2021-07-14T15:28:27,705   adding 'hits/interval.py'
2021-07-14T15:28:27,706   adding 'hits/ipython.py'
2021-07-14T15:28:27,709   adding 'hits/mapping_tools.py'
2021-07-14T15:28:27,712   adding 'hits/paired_end.py'
2021-07-14T15:28:27,719   adding 'hits/sam.py'
2021-07-14T15:28:27,723   adding 'hits/sw.py'
2021-07-14T15:28:27,920   adding 'hits/sw_cython.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T15:28:27,930   adding 'hits/utilities.py'
2021-07-14T15:28:27,933   adding 'hits/variants.py'
2021-07-14T15:28:27,936   adding 'hits/visualize_structure.py'
2021-07-14T15:28:27,939   adding 'hits/visualize/__init__.py'
2021-07-14T15:28:27,940   adding 'hits/visualize/define_igv_colors.py'
2021-07-14T15:28:27,942   adding 'hits/visualize/fastq.py'
2021-07-14T15:28:27,945   adding 'hits/visualize/gels.py'
2021-07-14T15:28:27,951   adding 'hits/visualize/interactive/__init__.py'
2021-07-14T15:28:28,398   adding 'hits/visualize/interactive/example_df.txt'
2021-07-14T15:28:28,421   adding 'hits/visualize/interactive/external_coffeescript.py'
2021-07-14T15:28:28,423   adding 'hits/visualize/interactive/pc.py'
2021-07-14T15:28:28,424   adding 'hits/visualize/interactive/pc_box_select.coffee'
2021-07-14T15:28:28,425   adding 'hits/visualize/interactive/pc_clear.coffee'
2021-07-14T15:28:28,426   adding 'hits/visualize/interactive/pc_hover.coffee'
2021-07-14T15:28:28,427   adding 'hits/visualize/interactive/pc_search.coffee'
2021-07-14T15:28:28,429   adding 'hits/visualize/interactive/pc_selection.coffee'
2021-07-14T15:28:28,430   adding 'hits/visualize/interactive/scatter_alpha.coffee'
2021-07-14T15:28:28,431   adding 'hits/visualize/interactive/scatter_annotation_button.coffee'
2021-07-14T15:28:28,432   adding 'hits/visualize/interactive/scatter_case_sensitive.coffee'
2021-07-14T15:28:28,433   adding 'hits/visualize/interactive/scatter_cluster_button.coffee'
2021-07-14T15:28:28,434   adding 'hits/visualize/interactive/scatter_color.coffee'
2021-07-14T15:28:28,435   adding 'hits/visualize/interactive/scatter_grid.coffee'
2021-07-14T15:28:28,437   adding 'hits/visualize/interactive/scatter_heatmap.coffee'
2021-07-14T15:28:28,438   adding 'hits/visualize/interactive/scatter_label.coffee'
2021-07-14T15:28:28,439   adding 'hits/visualize/interactive/scatter_label_button.coffee'
2021-07-14T15:28:28,440   adding 'hits/visualize/interactive/scatter_menu.coffee'
2021-07-14T15:28:28,441   adding 'hits/visualize/interactive/scatter_range.coffee'
2021-07-14T15:28:28,442   adding 'hits/visualize/interactive/scatter_save_button.coffee'
2021-07-14T15:28:28,443   adding 'hits/visualize/interactive/scatter_search.coffee'
2021-07-14T15:28:28,445   adding 'hits/visualize/interactive/scatter_selection.coffee'
2021-07-14T15:28:28,446   adding 'hits/visualize/interactive/scatter_size.coffee'
2021-07-14T15:28:28,447   adding 'hits/visualize/interactive/scatter_size_menu.coffee'
2021-07-14T15:28:28,448   adding 'hits/visualize/interactive/scatter_subset_menu.coffee'
2021-07-14T15:28:28,449   adding 'hits/visualize/interactive/scatter_two_level_menu.coffee'
2021-07-14T15:28:28,451   adding 'hits/visualize/interactive/scatter_zoom_to_data.coffee'
2021-07-14T15:28:28,452   adding 'hits/visualize/interactive/screen_errorbars_button.coffee'
2021-07-14T15:28:28,453   adding 'hits/visualize/interactive/screen_menu.coffee'
2021-07-14T15:28:28,454   adding 'hits/visualize/interactive/screen_range.coffee'
2021-07-14T15:28:28,455   adding 'hits/visualize/interactive/screen_scatter_selection.coffee'
2021-07-14T15:28:28,456   adding 'hits/visualize/interactive/screen_search.coffee'
2021-07-14T15:28:28,457   adding 'hits/visualize/interactive/screen_significance_filter.coffee'
2021-07-14T15:28:28,460   adding 'hits-0.0.4.dist-info/METADATA'
2021-07-14T15:28:28,461   adding 'hits-0.0.4.dist-info/WHEEL'
2021-07-14T15:28:28,462   adding 'hits-0.0.4.dist-info/top_level.txt'
2021-07-14T15:28:28,463   adding 'hits-0.0.4.dist-info/RECORD'
2021-07-14T15:28:28,494   removing build/bdist.linux-armv7l/wheel
2021-07-14T15:28:28,819   Building wheel for hits (setup.py): finished with status 'done'
2021-07-14T15:28:28,844   Created wheel for hits: filename=hits-0.0.4-cp39-cp39-linux_armv7l.whl size=1789271 sha256=9b8a8f08764382866ddbea62bb43f555936f5cfb83d603c7b0e411f5ab1cd8f3
2021-07-14T15:28:28,844   Stored in directory: /tmp/pip-ephem-wheel-cache-u6x0cdjz/wheels/07/6f/70/e91c7ddc84674e046b08cee30d11ee7ac07178b3fa50c4d55e
2021-07-14T15:28:28,857 Successfully built hits
2021-07-14T15:28:28,913 Removed build tracker: '/tmp/pip-req-tracker-entwtgye'