2021-07-14T15:46:54,756 Created temporary directory: /tmp/pip-ephem-wheel-cache-a5qp9rgg
2021-07-14T15:46:54,759 Created temporary directory: /tmp/pip-req-tracker-g0a6bsvd
2021-07-14T15:46:54,760 Initialized build tracking at /tmp/pip-req-tracker-g0a6bsvd
2021-07-14T15:46:54,760 Created build tracker: /tmp/pip-req-tracker-g0a6bsvd
2021-07-14T15:46:54,760 Entered build tracker: /tmp/pip-req-tracker-g0a6bsvd
2021-07-14T15:46:54,761 Created temporary directory: /tmp/pip-wheel-20_4dox3
2021-07-14T15:46:54,790 1 location(s) to search for versions of cluskit:
2021-07-14T15:46:54,790 * https://pypi.org/simple/cluskit/
2021-07-14T15:46:54,790 Fetching project page and analyzing links: https://pypi.org/simple/cluskit/
2021-07-14T15:46:54,791 Getting page https://pypi.org/simple/cluskit/
2021-07-14T15:46:54,792 Found index url https://pypi.org/simple
2021-07-14T15:46:54,886   Found link https://files.pythonhosted.org/packages/bf/5e/17c73a8a7c16fbd1552e26200d3b6106764385c150dd0c4b785a6abd21b4/cluskit-4.1.1.tar.gz#sha256=d5f370f47250ecaf2a2ba2e01c4edc105475f3c76b8e79a6d840f79bfa77d481 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.1
2021-07-14T15:46:54,886   Found link https://files.pythonhosted.org/packages/48/ad/d145607ebeeb170a6b5f38784b3a21b656834f4980e671c7885d4b608465/cluskit-4.1.2.tar.gz#sha256=09c192625bf3afb0778cbeeb25eb1a58942a139398f4c434dd623923a85c4458 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.2
2021-07-14T15:46:54,887   Found link https://files.pythonhosted.org/packages/88/66/600bdf10dc110a5341ddac9ef53a1d6a6e76612991bd8fb8bdc18a7db0bc/cluskit-4.1.3.tar.gz#sha256=63b025cc4bde39504bb8a19eaa4b8c31c2ae9202de1d6cb51d102c3371138028 (from https://pypi.org/simple/cluskit/), version: 4.1.3
2021-07-14T15:46:54,888   Found link https://files.pythonhosted.org/packages/57/26/7bb63fb9a6d93a50883cab11e12e0f4abce59438e8469253f0cd8b31c129/cluskit-4.1.4.tar.gz#sha256=02d2b87aabd81d1023d47c364d9018189e026484707d035d16d369c7ea2e2b71 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.4
2021-07-14T15:46:54,888   Found link https://files.pythonhosted.org/packages/15/e2/fc0d985e1da25702fe824843e72d605d08dc12275aa850bd1cedf26936e3/cluskit-4.1.5.tar.gz#sha256=24fd94552eee81fb71644223a6effe4cb87c35a9f8c32be43fd65a580490e4fd (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.5
2021-07-14T15:46:54,889   Found link https://files.pythonhosted.org/packages/d7/7c/2e7baf51ea88d5900c5fe5d1958e417a3af99086d8c231ddc572f0a45912/cluskit-4.1.6.tar.gz#sha256=5b05738212e2ae2a0f343dba329600f830b2b745644bc59faa4a514fa71fe0fc (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.6
2021-07-14T15:46:54,890   Found link https://files.pythonhosted.org/packages/d8/b4/0d21a5c4ae9c947b019211b115fb5e409f00072fcb14826728d0b4474c47/cluskit-4.1.7.tar.gz#sha256=853fc5be301391cad97b86e6cb167405b8e2e4e5f4db3132faf8160daedb1434 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.7
2021-07-14T15:46:54,890   Found link https://files.pythonhosted.org/packages/df/79/1fdd4ebbb2db009fa29804ddf086376638e62fcb6fbe40b0c3a9f3fa5b42/cluskit-4.1.8.tar.gz#sha256=af38ca611e2f744dec77e9d1e08dcbacef61649eb7c89e09ffe659bd8abf7a3c (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.8
2021-07-14T15:46:54,891   Found link https://files.pythonhosted.org/packages/8a/96/d07f3e153c32d6cedd8787b8c65e7edd5370a8d8a5cf28a7fd59e6de0f9f/cluskit-4.1.9.tar.gz#sha256=e7ed2e1f051139fc39d389bbdd9a6f2165a0d8ee464f66e1a31d7a2e388be4bb (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.9
2021-07-14T15:46:54,892   Found link https://files.pythonhosted.org/packages/3c/07/5239086aec8d865d32d474ced38741764e560750fd52bb065accf18cf664/cluskit-4.2.0.tar.gz#sha256=46c41a1ed3b4322a3fd3aee65b5f861a209c8f81648b5b2fed8de8a3864e3a07 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.2.0
2021-07-14T15:46:54,892 Skipping link: not a file: https://pypi.org/simple/cluskit/
2021-07-14T15:46:54,911 Given no hashes to check 1 links for project 'cluskit': discarding no candidates
2021-07-14T15:46:54,929 Collecting cluskit==4.1.7
2021-07-14T15:46:54,931   Created temporary directory: /tmp/pip-unpack-mj_6swcn
2021-07-14T15:46:55,119   Downloading cluskit-4.1.7.tar.gz (22 kB)
2021-07-14T15:46:55,195   Added cluskit==4.1.7 from https://files.pythonhosted.org/packages/d8/b4/0d21a5c4ae9c947b019211b115fb5e409f00072fcb14826728d0b4474c47/cluskit-4.1.7.tar.gz#sha256=853fc5be301391cad97b86e6cb167405b8e2e4e5f4db3132faf8160daedb1434 to build tracker '/tmp/pip-req-tracker-g0a6bsvd'
2021-07-14T15:46:55,196     Running setup.py (path:/tmp/pip-wheel-20_4dox3/cluskit_c3a33834aff94d21ba0e38e482048e19/setup.py) egg_info for package cluskit
2021-07-14T15:46:55,197     Created temporary directory: /tmp/pip-pip-egg-info-840_dt8x
2021-07-14T15:46:55,197     Running command python setup.py egg_info
2021-07-14T15:46:56,325     running egg_info
2021-07-14T15:46:56,328     creating /tmp/pip-pip-egg-info-840_dt8x/cluskit.egg-info
2021-07-14T15:46:56,329     writing /tmp/pip-pip-egg-info-840_dt8x/cluskit.egg-info/PKG-INFO
2021-07-14T15:46:56,331     writing dependency_links to /tmp/pip-pip-egg-info-840_dt8x/cluskit.egg-info/dependency_links.txt
2021-07-14T15:46:56,333     writing requirements to /tmp/pip-pip-egg-info-840_dt8x/cluskit.egg-info/requires.txt
2021-07-14T15:46:56,334     writing top-level names to /tmp/pip-pip-egg-info-840_dt8x/cluskit.egg-info/top_level.txt
2021-07-14T15:46:56,335     writing manifest file '/tmp/pip-pip-egg-info-840_dt8x/cluskit.egg-info/SOURCES.txt'
2021-07-14T15:46:56,672     reading manifest file '/tmp/pip-pip-egg-info-840_dt8x/cluskit.egg-info/SOURCES.txt'
2021-07-14T15:46:56,674     reading manifest template 'MANIFEST.in'
2021-07-14T15:46:56,675     adding license file 'LICENSE'
2021-07-14T15:46:56,677     writing manifest file '/tmp/pip-pip-egg-info-840_dt8x/cluskit.egg-info/SOURCES.txt'
2021-07-14T15:46:56,749   Source in /tmp/pip-wheel-20_4dox3/cluskit_c3a33834aff94d21ba0e38e482048e19 has version 4.1.7, which satisfies requirement cluskit==4.1.7 from https://files.pythonhosted.org/packages/d8/b4/0d21a5c4ae9c947b019211b115fb5e409f00072fcb14826728d0b4474c47/cluskit-4.1.7.tar.gz#sha256=853fc5be301391cad97b86e6cb167405b8e2e4e5f4db3132faf8160daedb1434
2021-07-14T15:46:56,750   Removed cluskit==4.1.7 from https://files.pythonhosted.org/packages/d8/b4/0d21a5c4ae9c947b019211b115fb5e409f00072fcb14826728d0b4474c47/cluskit-4.1.7.tar.gz#sha256=853fc5be301391cad97b86e6cb167405b8e2e4e5f4db3132faf8160daedb1434 from build tracker '/tmp/pip-req-tracker-g0a6bsvd'
2021-07-14T15:46:56,759 Created temporary directory: /tmp/pip-unpack-7ypda4fb
2021-07-14T15:46:56,759 Building wheels for collected packages: cluskit
2021-07-14T15:46:56,763   Created temporary directory: /tmp/pip-wheel-kdyzwsjn
2021-07-14T15:46:56,764   Building wheel for cluskit (setup.py): started
2021-07-14T15:46:56,764   Destination directory: /tmp/pip-wheel-kdyzwsjn
2021-07-14T15:46:56,764   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-20_4dox3/cluskit_c3a33834aff94d21ba0e38e482048e19/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-20_4dox3/cluskit_c3a33834aff94d21ba0e38e482048e19/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-kdyzwsjn
2021-07-14T15:46:57,894   running bdist_wheel
2021-07-14T15:46:58,051   running build
2021-07-14T15:46:58,051   running build_py
2021-07-14T15:46:58,191   creating build
2021-07-14T15:46:58,192   creating build/lib.linux-armv7l-3.9
2021-07-14T15:46:58,192   creating build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:58,193   copying examples/build_clusters.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:58,195   copying examples/example_different_methods.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:58,197   copying examples/nh3_on_cluster.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:58,199   copying examples/__init__.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:58,200   copying examples/quick_guide.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:58,202   creating build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:58,203   copying cluskit/utils.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:58,206   copying cluskit/cluster.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:58,208   copying cluskit/build.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:58,211   copying cluskit/__init__.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:58,212   copying cluskit/delaunay.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:58,216   running build_ext
2021-07-14T15:46:58,223   building 'lib.libcluskit3' extension
2021-07-14T15:46:58,223   creating build/temp.linux-armv7l-3.9
2021-07-14T15:46:58,224   creating build/temp.linux-armv7l-3.9/src
2021-07-14T15:46:58,224   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/cluskit.c -o build/temp.linux-armv7l-3.9/src/cluskit.o -O3 -std=c99
2021-07-14T15:46:58,342   src/cluskit.c: In function ‘findSurf’:
2021-07-14T15:46:58,342   src/cluskit.c:56:7: warning: unused variable ‘maxAtomIndx’ [-Wunused-variable]
2021-07-14T15:46:58,343      56 |   int maxAtomIndx;  double minVal;  int minAtomsI;
2021-07-14T15:46:58,343         |       ^~~~~~~~~~~
2021-07-14T15:46:58,343   src/cluskit.c:55:8: warning: unused variable ‘isSurf’ [-Wunused-variable]
2021-07-14T15:46:58,343      55 |   int* isSurf = (int*) malloc(sizeof(int)*size);
2021-07-14T15:46:58,343         |        ^~~~~~
2021-07-14T15:46:58,343   src/cluskit.c:53:10: warning: unused variable ‘xPosInit’ [-Wunused-variable]
2021-07-14T15:46:58,344      53 |   double xPosInit = xPos; double yPosInit = yPos; double zPosInit = zPos;
2021-07-14T15:46:58,344         |          ^~~~~~~~
2021-07-14T15:46:58,344   src/cluskit.c: In function ‘getEta1’:
2021-07-14T15:46:58,345   src/cluskit.c:92:10: warning: unused variable ‘distBuf’ [-Wunused-variable]
2021-07-14T15:46:58,345      92 |   double distBuf;
2021-07-14T15:46:58,345         |          ^~~~~~~
2021-07-14T15:46:58,472   src/cluskit.c: In function ‘findSurf’:
2021-07-14T15:46:58,472   src/cluskit.c:68:36: warning: ‘minAtomsI’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-14T15:46:58,472      68 |             surfAtomsBuff[marcher] = minAtomsI;
2021-07-14T15:46:58,472         |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2021-07-14T15:46:59,109   creating build/lib.linux-armv7l-3.9/lib
2021-07-14T15:46:59,110   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/cluskit.o -lm -o build/lib.linux-armv7l-3.9/lib/libcluskit3.cpython-39-arm-linux-gnueabihf.so
2021-07-14T15:46:59,245   installing to build/bdist.linux-armv7l/wheel
2021-07-14T15:46:59,245   running install
2021-07-14T15:46:59,247   running install_lib
2021-07-14T15:46:59,251   creating build/bdist.linux-armv7l
2021-07-14T15:46:59,251   creating build/bdist.linux-armv7l/wheel
2021-07-14T15:46:59,253   creating build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:46:59,254   copying build/lib.linux-armv7l-3.9/examples/build_clusters.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:46:59,256   copying build/lib.linux-armv7l-3.9/examples/example_different_methods.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:46:59,258   copying build/lib.linux-armv7l-3.9/examples/nh3_on_cluster.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:46:59,260   copying build/lib.linux-armv7l-3.9/examples/__init__.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:46:59,262   copying build/lib.linux-armv7l-3.9/examples/quick_guide.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:46:59,264   creating build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:46:59,265   copying build/lib.linux-armv7l-3.9/cluskit/utils.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:46:59,268   copying build/lib.linux-armv7l-3.9/cluskit/cluster.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:46:59,270   copying build/lib.linux-armv7l-3.9/cluskit/build.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:46:59,273   copying build/lib.linux-armv7l-3.9/cluskit/__init__.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:46:59,275   copying build/lib.linux-armv7l-3.9/cluskit/delaunay.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:46:59,278   creating build/bdist.linux-armv7l/wheel/lib
2021-07-14T15:46:59,279   copying build/lib.linux-armv7l-3.9/lib/libcluskit3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lib
2021-07-14T15:46:59,282   running install_egg_info
2021-07-14T15:46:59,307   running egg_info
2021-07-14T15:46:59,308   writing cluskit.egg-info/PKG-INFO
2021-07-14T15:46:59,310   writing dependency_links to cluskit.egg-info/dependency_links.txt
2021-07-14T15:46:59,312   writing requirements to cluskit.egg-info/requires.txt
2021-07-14T15:46:59,313   writing top-level names to cluskit.egg-info/top_level.txt
2021-07-14T15:46:59,318   reading manifest file 'cluskit.egg-info/SOURCES.txt'
2021-07-14T15:46:59,319   reading manifest template 'MANIFEST.in'
2021-07-14T15:46:59,320   adding license file 'LICENSE'
2021-07-14T15:46:59,323   writing manifest file 'cluskit.egg-info/SOURCES.txt'
2021-07-14T15:46:59,324   Copying cluskit.egg-info to build/bdist.linux-armv7l/wheel/cluskit-4.1.7-py3.9.egg-info
2021-07-14T15:46:59,334   running install_scripts
2021-07-14T15:46:59,415   creating build/bdist.linux-armv7l/wheel/cluskit-4.1.7.dist-info/WHEEL
2021-07-14T15:46:59,417   creating '/tmp/pip-wheel-kdyzwsjn/cluskit-4.1.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T15:46:59,420   adding 'cluskit/__init__.py'
2021-07-14T15:46:59,422   adding 'cluskit/build.py'
2021-07-14T15:46:59,425   adding 'cluskit/cluster.py'
2021-07-14T15:46:59,427   adding 'cluskit/delaunay.py'
2021-07-14T15:46:59,429   adding 'cluskit/utils.py'
2021-07-14T15:46:59,432   adding 'examples/__init__.py'
2021-07-14T15:46:59,433   adding 'examples/build_clusters.py'
2021-07-14T15:46:59,435   adding 'examples/example_different_methods.py'
2021-07-14T15:46:59,436   adding 'examples/nh3_on_cluster.py'
2021-07-14T15:46:59,437   adding 'examples/quick_guide.py'
2021-07-14T15:46:59,444   adding 'lib/libcluskit3.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T15:46:59,446   adding 'cluskit-4.1.7.dist-info/LICENSE'
2021-07-14T15:46:59,447   adding 'cluskit-4.1.7.dist-info/METADATA'
2021-07-14T15:46:59,447   adding 'cluskit-4.1.7.dist-info/WHEEL'
2021-07-14T15:46:59,448   adding 'cluskit-4.1.7.dist-info/top_level.txt'
2021-07-14T15:46:59,449   adding 'cluskit-4.1.7.dist-info/RECORD'
2021-07-14T15:46:59,451   removing build/bdist.linux-armv7l/wheel
2021-07-14T15:46:59,543   Building wheel for cluskit (setup.py): finished with status 'done'
2021-07-14T15:46:59,546   Created wheel for cluskit: filename=cluskit-4.1.7-cp39-cp39-linux_armv7l.whl size=37988 sha256=ddc530cafc9867783b935923f67b2782d000810ce6ca11031cac493228ccef13
2021-07-14T15:46:59,546   Stored in directory: /tmp/pip-ephem-wheel-cache-a5qp9rgg/wheels/13/2e/49/80f608c8b5b973496b5ce4ef9aeb58caeb0792675426091a1c
2021-07-14T15:46:59,555 Successfully built cluskit
2021-07-14T15:46:59,560 Removed build tracker: '/tmp/pip-req-tracker-g0a6bsvd'