2021-07-14T15:46:55,938 Created temporary directory: /tmp/pip-ephem-wheel-cache-325r65m7
2021-07-14T15:46:55,941 Created temporary directory: /tmp/pip-req-tracker-yvdx03wj
2021-07-14T15:46:55,941 Initialized build tracking at /tmp/pip-req-tracker-yvdx03wj
2021-07-14T15:46:55,941 Created build tracker: /tmp/pip-req-tracker-yvdx03wj
2021-07-14T15:46:55,941 Entered build tracker: /tmp/pip-req-tracker-yvdx03wj
2021-07-14T15:46:55,942 Created temporary directory: /tmp/pip-wheel-q4j2y60m
2021-07-14T15:46:55,971 1 location(s) to search for versions of cluskit:
2021-07-14T15:46:55,971 * https://pypi.org/simple/cluskit/
2021-07-14T15:46:55,972 Fetching project page and analyzing links: https://pypi.org/simple/cluskit/
2021-07-14T15:46:55,972 Getting page https://pypi.org/simple/cluskit/
2021-07-14T15:46:55,974 Found index url https://pypi.org/simple
2021-07-14T15:46:56,067   Found link https://files.pythonhosted.org/packages/bf/5e/17c73a8a7c16fbd1552e26200d3b6106764385c150dd0c4b785a6abd21b4/cluskit-4.1.1.tar.gz#sha256=d5f370f47250ecaf2a2ba2e01c4edc105475f3c76b8e79a6d840f79bfa77d481 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.1
2021-07-14T15:46:56,068   Found link https://files.pythonhosted.org/packages/48/ad/d145607ebeeb170a6b5f38784b3a21b656834f4980e671c7885d4b608465/cluskit-4.1.2.tar.gz#sha256=09c192625bf3afb0778cbeeb25eb1a58942a139398f4c434dd623923a85c4458 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.2
2021-07-14T15:46:56,068   Found link https://files.pythonhosted.org/packages/88/66/600bdf10dc110a5341ddac9ef53a1d6a6e76612991bd8fb8bdc18a7db0bc/cluskit-4.1.3.tar.gz#sha256=63b025cc4bde39504bb8a19eaa4b8c31c2ae9202de1d6cb51d102c3371138028 (from https://pypi.org/simple/cluskit/), version: 4.1.3
2021-07-14T15:46:56,069   Found link https://files.pythonhosted.org/packages/57/26/7bb63fb9a6d93a50883cab11e12e0f4abce59438e8469253f0cd8b31c129/cluskit-4.1.4.tar.gz#sha256=02d2b87aabd81d1023d47c364d9018189e026484707d035d16d369c7ea2e2b71 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.4
2021-07-14T15:46:56,069   Found link https://files.pythonhosted.org/packages/15/e2/fc0d985e1da25702fe824843e72d605d08dc12275aa850bd1cedf26936e3/cluskit-4.1.5.tar.gz#sha256=24fd94552eee81fb71644223a6effe4cb87c35a9f8c32be43fd65a580490e4fd (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.5
2021-07-14T15:46:56,070   Found link https://files.pythonhosted.org/packages/d7/7c/2e7baf51ea88d5900c5fe5d1958e417a3af99086d8c231ddc572f0a45912/cluskit-4.1.6.tar.gz#sha256=5b05738212e2ae2a0f343dba329600f830b2b745644bc59faa4a514fa71fe0fc (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.6
2021-07-14T15:46:56,071   Found link https://files.pythonhosted.org/packages/d8/b4/0d21a5c4ae9c947b019211b115fb5e409f00072fcb14826728d0b4474c47/cluskit-4.1.7.tar.gz#sha256=853fc5be301391cad97b86e6cb167405b8e2e4e5f4db3132faf8160daedb1434 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.7
2021-07-14T15:46:56,071   Found link https://files.pythonhosted.org/packages/df/79/1fdd4ebbb2db009fa29804ddf086376638e62fcb6fbe40b0c3a9f3fa5b42/cluskit-4.1.8.tar.gz#sha256=af38ca611e2f744dec77e9d1e08dcbacef61649eb7c89e09ffe659bd8abf7a3c (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.8
2021-07-14T15:46:56,072   Found link https://files.pythonhosted.org/packages/8a/96/d07f3e153c32d6cedd8787b8c65e7edd5370a8d8a5cf28a7fd59e6de0f9f/cluskit-4.1.9.tar.gz#sha256=e7ed2e1f051139fc39d389bbdd9a6f2165a0d8ee464f66e1a31d7a2e388be4bb (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.1.9
2021-07-14T15:46:56,073   Found link https://files.pythonhosted.org/packages/3c/07/5239086aec8d865d32d474ced38741764e560750fd52bb065accf18cf664/cluskit-4.2.0.tar.gz#sha256=46c41a1ed3b4322a3fd3aee65b5f861a209c8f81648b5b2fed8de8a3864e3a07 (from https://pypi.org/simple/cluskit/) (requires-python:>=2.2, <4), version: 4.2.0
2021-07-14T15:46:56,073 Skipping link: not a file: https://pypi.org/simple/cluskit/
2021-07-14T15:46:56,092 Given no hashes to check 1 links for project 'cluskit': discarding no candidates
2021-07-14T15:46:56,114 Collecting cluskit==4.1.8
2021-07-14T15:46:56,115   Created temporary directory: /tmp/pip-unpack-uh_gtl2l
2021-07-14T15:46:56,288   Downloading cluskit-4.1.8.tar.gz (22 kB)
2021-07-14T15:46:56,359   Added cluskit==4.1.8 from https://files.pythonhosted.org/packages/df/79/1fdd4ebbb2db009fa29804ddf086376638e62fcb6fbe40b0c3a9f3fa5b42/cluskit-4.1.8.tar.gz#sha256=af38ca611e2f744dec77e9d1e08dcbacef61649eb7c89e09ffe659bd8abf7a3c to build tracker '/tmp/pip-req-tracker-yvdx03wj'
2021-07-14T15:46:56,360     Running setup.py (path:/tmp/pip-wheel-q4j2y60m/cluskit_bf343cf19c7e410c9d23170b0945eecf/setup.py) egg_info for package cluskit
2021-07-14T15:46:56,360     Created temporary directory: /tmp/pip-pip-egg-info-yuf9paw6
2021-07-14T15:46:56,361     Running command python setup.py egg_info
2021-07-14T15:46:57,560     running egg_info
2021-07-14T15:46:57,562     creating /tmp/pip-pip-egg-info-yuf9paw6/cluskit.egg-info
2021-07-14T15:46:57,563     writing /tmp/pip-pip-egg-info-yuf9paw6/cluskit.egg-info/PKG-INFO
2021-07-14T15:46:57,565     writing dependency_links to /tmp/pip-pip-egg-info-yuf9paw6/cluskit.egg-info/dependency_links.txt
2021-07-14T15:46:57,567     writing requirements to /tmp/pip-pip-egg-info-yuf9paw6/cluskit.egg-info/requires.txt
2021-07-14T15:46:57,568     writing top-level names to /tmp/pip-pip-egg-info-yuf9paw6/cluskit.egg-info/top_level.txt
2021-07-14T15:46:57,570     writing manifest file '/tmp/pip-pip-egg-info-yuf9paw6/cluskit.egg-info/SOURCES.txt'
2021-07-14T15:46:57,921     reading manifest file '/tmp/pip-pip-egg-info-yuf9paw6/cluskit.egg-info/SOURCES.txt'
2021-07-14T15:46:57,924     reading manifest template 'MANIFEST.in'
2021-07-14T15:46:57,925     adding license file 'LICENSE'
2021-07-14T15:46:57,928     writing manifest file '/tmp/pip-pip-egg-info-yuf9paw6/cluskit.egg-info/SOURCES.txt'
2021-07-14T15:46:58,017   Source in /tmp/pip-wheel-q4j2y60m/cluskit_bf343cf19c7e410c9d23170b0945eecf has version 4.1.8, which satisfies requirement cluskit==4.1.8 from https://files.pythonhosted.org/packages/df/79/1fdd4ebbb2db009fa29804ddf086376638e62fcb6fbe40b0c3a9f3fa5b42/cluskit-4.1.8.tar.gz#sha256=af38ca611e2f744dec77e9d1e08dcbacef61649eb7c89e09ffe659bd8abf7a3c
2021-07-14T15:46:58,018   Removed cluskit==4.1.8 from https://files.pythonhosted.org/packages/df/79/1fdd4ebbb2db009fa29804ddf086376638e62fcb6fbe40b0c3a9f3fa5b42/cluskit-4.1.8.tar.gz#sha256=af38ca611e2f744dec77e9d1e08dcbacef61649eb7c89e09ffe659bd8abf7a3c from build tracker '/tmp/pip-req-tracker-yvdx03wj'
2021-07-14T15:46:58,024 Created temporary directory: /tmp/pip-unpack-_qxan3kf
2021-07-14T15:46:58,025 Building wheels for collected packages: cluskit
2021-07-14T15:46:58,029   Created temporary directory: /tmp/pip-wheel-msbpm3l3
2021-07-14T15:46:58,030   Building wheel for cluskit (setup.py): started
2021-07-14T15:46:58,030   Destination directory: /tmp/pip-wheel-msbpm3l3
2021-07-14T15:46:58,030   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-q4j2y60m/cluskit_bf343cf19c7e410c9d23170b0945eecf/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-q4j2y60m/cluskit_bf343cf19c7e410c9d23170b0945eecf/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-msbpm3l3
2021-07-14T15:46:59,237   running bdist_wheel
2021-07-14T15:46:59,396   running build
2021-07-14T15:46:59,397   running build_py
2021-07-14T15:46:59,536   creating build
2021-07-14T15:46:59,536   creating build/lib.linux-armv7l-3.9
2021-07-14T15:46:59,537   creating build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:59,538   copying examples/nh3_on_cluster.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:59,540   copying examples/example_different_methods.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:59,542   copying examples/quick_guide.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:59,544   copying examples/__init__.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:59,545   copying examples/build_clusters.py -> build/lib.linux-armv7l-3.9/examples
2021-07-14T15:46:59,547   creating build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:59,548   copying cluskit/cluster.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:59,551   copying cluskit/build.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:59,554   copying cluskit/utils.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:59,556   copying cluskit/delaunay.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:59,559   copying cluskit/__init__.py -> build/lib.linux-armv7l-3.9/cluskit
2021-07-14T15:46:59,562   running build_ext
2021-07-14T15:46:59,568   building 'lib.libcluskit3' extension
2021-07-14T15:46:59,569   creating build/temp.linux-armv7l-3.9
2021-07-14T15:46:59,569   creating build/temp.linux-armv7l-3.9/src
2021-07-14T15:46:59,570   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/cluskit.c -o build/temp.linux-armv7l-3.9/src/cluskit.o -O3 -std=c99
2021-07-14T15:46:59,687   src/cluskit.c: In function ‘findSurf’:
2021-07-14T15:46:59,688   src/cluskit.c:56:7: warning: unused variable ‘maxAtomIndx’ [-Wunused-variable]
2021-07-14T15:46:59,688      56 |   int maxAtomIndx;  double minVal;  int minAtomsI;
2021-07-14T15:46:59,688         |       ^~~~~~~~~~~
2021-07-14T15:46:59,688   src/cluskit.c:55:8: warning: unused variable ‘isSurf’ [-Wunused-variable]
2021-07-14T15:46:59,688      55 |   int* isSurf = (int*) malloc(sizeof(int)*size);
2021-07-14T15:46:59,688         |        ^~~~~~
2021-07-14T15:46:59,689   src/cluskit.c:53:10: warning: unused variable ‘xPosInit’ [-Wunused-variable]
2021-07-14T15:46:59,689      53 |   double xPosInit = xPos; double yPosInit = yPos; double zPosInit = zPos;
2021-07-14T15:46:59,689         |          ^~~~~~~~
2021-07-14T15:46:59,689   src/cluskit.c: In function ‘getEta1’:
2021-07-14T15:46:59,690   src/cluskit.c:92:10: warning: unused variable ‘distBuf’ [-Wunused-variable]
2021-07-14T15:46:59,690      92 |   double distBuf;
2021-07-14T15:46:59,690         |          ^~~~~~~
2021-07-14T15:46:59,817   src/cluskit.c: In function ‘findSurf’:
2021-07-14T15:46:59,818   src/cluskit.c:68:36: warning: ‘minAtomsI’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-14T15:46:59,818      68 |             surfAtomsBuff[marcher] = minAtomsI;
2021-07-14T15:46:59,818         |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2021-07-14T15:47:00,456   creating build/lib.linux-armv7l-3.9/lib
2021-07-14T15:47:00,456   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/cluskit.o -lm -o build/lib.linux-armv7l-3.9/lib/libcluskit3.cpython-39-arm-linux-gnueabihf.so
2021-07-14T15:47:00,602   installing to build/bdist.linux-armv7l/wheel
2021-07-14T15:47:00,602   running install
2021-07-14T15:47:00,603   running install_lib
2021-07-14T15:47:00,608   creating build/bdist.linux-armv7l
2021-07-14T15:47:00,608   creating build/bdist.linux-armv7l/wheel
2021-07-14T15:47:00,610   creating build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:47:00,611   copying build/lib.linux-armv7l-3.9/examples/nh3_on_cluster.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:47:00,613   copying build/lib.linux-armv7l-3.9/examples/example_different_methods.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:47:00,615   copying build/lib.linux-armv7l-3.9/examples/quick_guide.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:47:00,617   copying build/lib.linux-armv7l-3.9/examples/__init__.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:47:00,619   copying build/lib.linux-armv7l-3.9/examples/build_clusters.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-14T15:47:00,621   creating build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:47:00,622   copying build/lib.linux-armv7l-3.9/cluskit/cluster.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:47:00,625   copying build/lib.linux-armv7l-3.9/cluskit/build.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:47:00,627   copying build/lib.linux-armv7l-3.9/cluskit/utils.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:47:00,630   copying build/lib.linux-armv7l-3.9/cluskit/delaunay.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:47:00,632   copying build/lib.linux-armv7l-3.9/cluskit/__init__.py -> build/bdist.linux-armv7l/wheel/cluskit
2021-07-14T15:47:00,635   creating build/bdist.linux-armv7l/wheel/lib
2021-07-14T15:47:00,635   copying build/lib.linux-armv7l-3.9/lib/libcluskit3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lib
2021-07-14T15:47:00,638   running install_egg_info
2021-07-14T15:47:00,661   running egg_info
2021-07-14T15:47:00,662   writing cluskit.egg-info/PKG-INFO
2021-07-14T15:47:00,664   writing dependency_links to cluskit.egg-info/dependency_links.txt
2021-07-14T15:47:00,666   writing requirements to cluskit.egg-info/requires.txt
2021-07-14T15:47:00,667   writing top-level names to cluskit.egg-info/top_level.txt
2021-07-14T15:47:00,696   reading manifest file 'cluskit.egg-info/SOURCES.txt'
2021-07-14T15:47:00,698   reading manifest template 'MANIFEST.in'
2021-07-14T15:47:00,700   adding license file 'LICENSE'
2021-07-14T15:47:00,703   writing manifest file 'cluskit.egg-info/SOURCES.txt'
2021-07-14T15:47:00,705   Copying cluskit.egg-info to build/bdist.linux-armv7l/wheel/cluskit-4.1.8-py3.9.egg-info
2021-07-14T15:47:00,718   running install_scripts
2021-07-14T15:47:00,803   creating build/bdist.linux-armv7l/wheel/cluskit-4.1.8.dist-info/WHEEL
2021-07-14T15:47:00,806   creating '/tmp/pip-wheel-msbpm3l3/cluskit-4.1.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T15:47:00,808   adding 'cluskit/__init__.py'
2021-07-14T15:47:00,811   adding 'cluskit/build.py'
2021-07-14T15:47:00,814   adding 'cluskit/cluster.py'
2021-07-14T15:47:00,816   adding 'cluskit/delaunay.py'
2021-07-14T15:47:00,818   adding 'cluskit/utils.py'
2021-07-14T15:47:00,821   adding 'examples/__init__.py'
2021-07-14T15:47:00,822   adding 'examples/build_clusters.py'
2021-07-14T15:47:00,824   adding 'examples/example_different_methods.py'
2021-07-14T15:47:00,825   adding 'examples/nh3_on_cluster.py'
2021-07-14T15:47:00,826   adding 'examples/quick_guide.py'
2021-07-14T15:47:00,833   adding 'lib/libcluskit3.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T15:47:00,835   adding 'cluskit-4.1.8.dist-info/LICENSE'
2021-07-14T15:47:00,836   adding 'cluskit-4.1.8.dist-info/METADATA'
2021-07-14T15:47:00,837   adding 'cluskit-4.1.8.dist-info/WHEEL'
2021-07-14T15:47:00,838   adding 'cluskit-4.1.8.dist-info/top_level.txt'
2021-07-14T15:47:00,839   adding 'cluskit-4.1.8.dist-info/RECORD'
2021-07-14T15:47:00,840   removing build/bdist.linux-armv7l/wheel
2021-07-14T15:47:00,940   Building wheel for cluskit (setup.py): finished with status 'done'
2021-07-14T15:47:00,942   Created wheel for cluskit: filename=cluskit-4.1.8-cp39-cp39-linux_armv7l.whl size=37988 sha256=bee4400105ac7d3867f590dd3c8f3a805d06cc9bd9c2f12ac539d172126f3a9f
2021-07-14T15:47:00,943   Stored in directory: /tmp/pip-ephem-wheel-cache-325r65m7/wheels/7a/b5/a3/d28c99520fb7834d4b20e17a38e1115a7abcdc33c5dfb7c741
2021-07-14T15:47:00,952 Successfully built cluskit
2021-07-14T15:47:00,956 Removed build tracker: '/tmp/pip-req-tracker-yvdx03wj'