2021-07-14T15:54:35,943 Created temporary directory: /tmp/pip-ephem-wheel-cache-n19kcz92 2021-07-14T15:54:35,946 Created temporary directory: /tmp/pip-req-tracker-_pyu1wwg 2021-07-14T15:54:35,946 Initialized build tracking at /tmp/pip-req-tracker-_pyu1wwg 2021-07-14T15:54:35,946 Created build tracker: /tmp/pip-req-tracker-_pyu1wwg 2021-07-14T15:54:35,947 Entered build tracker: /tmp/pip-req-tracker-_pyu1wwg 2021-07-14T15:54:35,947 Created temporary directory: /tmp/pip-wheel-dnz4h86f 2021-07-14T15:54:35,977 1 location(s) to search for versions of gat: 2021-07-14T15:54:35,977 * https://pypi.org/simple/gat/ 2021-07-14T15:54:35,977 Fetching project page and analyzing links: https://pypi.org/simple/gat/ 2021-07-14T15:54:35,978 Getting page https://pypi.org/simple/gat/ 2021-07-14T15:54:35,980 Found index url https://pypi.org/simple 2021-07-14T15:54:36,248 Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1 2021-07-14T15:54:36,249 Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2 2021-07-14T15:54:36,249 Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1 2021-07-14T15:54:36,250 Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2 2021-07-14T15:54:36,250 Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1 2021-07-14T15:54:36,250 Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2 2021-07-14T15:54:36,251 Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0 2021-07-14T15:54:36,251 Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1 2021-07-14T15:54:36,251 Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2 2021-07-14T15:54:36,251 Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3 2021-07-14T15:54:36,252 Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4 2021-07-14T15:54:36,252 Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5 2021-07-14T15:54:36,252 Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6 2021-07-14T15:54:36,252 Skipping link: not a file: https://pypi.org/simple/gat/ 2021-07-14T15:54:36,272 Given no hashes to check 1 links for project 'gat': discarding no candidates 2021-07-14T15:54:36,294 Collecting gat==1.3.6 2021-07-14T15:54:36,295 Created temporary directory: /tmp/pip-unpack-pi8g3lv9 2021-07-14T15:54:36,516 Downloading gat-1.3.6.tar.gz (88 kB) 2021-07-14T15:54:36,646 Added gat==1.3.6 from https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a to build tracker '/tmp/pip-req-tracker-_pyu1wwg' 2021-07-14T15:54:36,647 Running setup.py (path:/tmp/pip-wheel-dnz4h86f/gat_52df967c444d47688932f686cf5eab2f/setup.py) egg_info for package gat 2021-07-14T15:54:36,648 Created temporary directory: /tmp/pip-pip-egg-info-2pfgor_u 2021-07-14T15:54:36,648 Running command python setup.py egg_info 2021-07-14T15:54:38,151 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-14T15:54:38,152 warnings.warn( 2021-07-14T15:54:38,313 running egg_info 2021-07-14T15:54:38,315 creating /tmp/pip-pip-egg-info-2pfgor_u/gat.egg-info 2021-07-14T15:54:38,317 writing /tmp/pip-pip-egg-info-2pfgor_u/gat.egg-info/PKG-INFO 2021-07-14T15:54:38,319 writing dependency_links to /tmp/pip-pip-egg-info-2pfgor_u/gat.egg-info/dependency_links.txt 2021-07-14T15:54:38,321 writing requirements to /tmp/pip-pip-egg-info-2pfgor_u/gat.egg-info/requires.txt 2021-07-14T15:54:38,322 writing top-level names to /tmp/pip-pip-egg-info-2pfgor_u/gat.egg-info/top_level.txt 2021-07-14T15:54:38,323 writing manifest file '/tmp/pip-pip-egg-info-2pfgor_u/gat.egg-info/SOURCES.txt' 2021-07-14T15:54:38,500 reading manifest file '/tmp/pip-pip-egg-info-2pfgor_u/gat.egg-info/SOURCES.txt' 2021-07-14T15:54:38,502 reading manifest template 'MANIFEST.in' 2021-07-14T15:54:38,504 warning: no files found matching 'COPYING' 2021-07-14T15:54:38,504 warning: no files found matching 'INSTALL' 2021-07-14T15:54:38,504 warning: no files found matching 'KNOWN_BUGS' 2021-07-14T15:54:38,505 warning: no files found matching 'THANKS' 2021-07-14T15:54:38,513 writing manifest file '/tmp/pip-pip-egg-info-2pfgor_u/gat.egg-info/SOURCES.txt' 2021-07-14T15:54:38,633 Source in /tmp/pip-wheel-dnz4h86f/gat_52df967c444d47688932f686cf5eab2f has version 1.3.6, which satisfies requirement gat==1.3.6 from https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a 2021-07-14T15:54:38,634 Removed gat==1.3.6 from https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a from build tracker '/tmp/pip-req-tracker-_pyu1wwg' 2021-07-14T15:54:38,638 Created temporary directory: /tmp/pip-unpack-jxlmuskc 2021-07-14T15:54:38,639 Building wheels for collected packages: gat 2021-07-14T15:54:38,643 Created temporary directory: /tmp/pip-wheel-v9mgdbw_ 2021-07-14T15:54:38,643 Building wheel for gat (setup.py): started 2021-07-14T15:54:38,644 Destination directory: /tmp/pip-wheel-v9mgdbw_ 2021-07-14T15:54:38,644 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-dnz4h86f/gat_52df967c444d47688932f686cf5eab2f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-dnz4h86f/gat_52df967c444d47688932f686cf5eab2f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-v9mgdbw_ 2021-07-14T15:54:40,114 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-14T15:54:40,115 warnings.warn( 2021-07-14T15:54:40,275 running bdist_wheel 2021-07-14T15:54:40,280 running build 2021-07-14T15:54:40,280 running build_py 2021-07-14T15:54:40,414 creating build 2021-07-14T15:54:40,415 creating build/lib.linux-armv7l-3.9 2021-07-14T15:54:40,415 creating build/lib.linux-armv7l-3.9/gat 2021-07-14T15:54:40,416 copying gat/Stats.py -> build/lib.linux-armv7l-3.9/gat 2021-07-14T15:54:40,419 copying gat/__init__.py -> build/lib.linux-armv7l-3.9/gat 2021-07-14T15:54:40,422 copying gat/IO.py -> build/lib.linux-armv7l-3.9/gat 2021-07-14T15:54:40,424 copying gat/Bed.py -> build/lib.linux-armv7l-3.9/gat 2021-07-14T15:54:40,427 copying gat/IOTools.py -> build/lib.linux-armv7l-3.9/gat 2021-07-14T15:54:40,430 copying gat/Experiment.py -> build/lib.linux-armv7l-3.9/gat 2021-07-14T15:54:40,432 running build_ext 2021-07-14T15:54:40,519 cythoning gat/CoordinateList.pyx to gat/CoordinateList.c 2021-07-14T15:54:41,112 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dnz4h86f/gat_52df967c444d47688932f686cf5eab2f/gat/CoordinateList.pxd 2021-07-14T15:54:41,112 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T15:54:41,393 cythoning gat/SegmentList.pyx to gat/SegmentList.c 2021-07-14T15:54:41,398 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dnz4h86f/gat_52df967c444d47688932f686cf5eab2f/gat/SegmentList.pxd 2021-07-14T15:54:41,399 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T15:54:47,487 cythoning gat/PositionList.pyx to gat/PositionList.c 2021-07-14T15:54:47,493 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dnz4h86f/gat_52df967c444d47688932f686cf5eab2f/gat/PositionList.pxd 2021-07-14T15:54:47,493 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T15:54:50,375 cythoning gat/Engine.pyx to gat/Engine.c 2021-07-14T15:54:50,380 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dnz4h86f/gat_52df967c444d47688932f686cf5eab2f/gat/Engine.pxd 2021-07-14T15:54:50,381 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T15:54:59,834 building 'gat.CoordinateList' extension 2021-07-14T15:54:59,835 creating build/temp.linux-armv7l-3.9 2021-07-14T15:54:59,835 creating build/temp.linux-armv7l-3.9/gat 2021-07-14T15:54:59,836 creating build/temp.linux-armv7l-3.9/utils 2021-07-14T15:54:59,836 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c gat/CoordinateList.c -o build/temp.linux-armv7l-3.9/gat/CoordinateList.o 2021-07-14T15:55:02,723 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-14T15:55:02,868 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-14T15:55:02,869 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-14T15:55:02,869 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-14T15:55:02,869 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T15:55:02,869 | | 2021-07-14T15:55:02,869 | size_t * {aka unsigned int *} 2021-07-14T15:55:02,871 In file included from /usr/include/zlib.h:34, 2021-07-14T15:55:02,871 from utils/gat_utils.c:2: 2021-07-14T15:55:02,871 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-14T15:55:02,871 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-14T15:55:02,871 | ^~ 2021-07-14T15:55:02,992 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/CoordinateList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so 2021-07-14T15:55:03,131 building 'gat.SegmentList' extension 2021-07-14T15:55:03,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c gat/SegmentList.c -o build/temp.linux-armv7l-3.9/gat/SegmentList.o 2021-07-14T15:55:03,535 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T15:55:03,536 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T15:55:03,536 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T15:55:03,536 from gat/SegmentList.c:623: 2021-07-14T15:55:03,536 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T15:55:03,536 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T15:55:03,537 | ^~~~~~~ 2021-07-14T15:55:03,669 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim_ends’: 2021-07-14T15:55:03,672 gat/SegmentList.c:7383:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-14T15:55:03,673 7383 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-14T15:55:03,673 | ^ 2021-07-14T15:55:03,673 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-14T15:55:03,673 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-14T15:55:03,673 | ^ 2021-07-14T15:55:03,678 gat/SegmentList.c:7433:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,678 7433 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,678 | ^~ 2021-07-14T15:55:03,683 gat/SegmentList.c:7568:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,684 7568 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,684 | ^~ 2021-07-14T15:55:03,691 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__resize’: 2021-07-14T15:55:03,695 gat/SegmentList.c:7887:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,695 7887 | if (unlikely(!((__pyx_v_nsegments >= __pyx_v_self->nsegments) != 0))) { 2021-07-14T15:55:03,696 | ^~ 2021-07-14T15:55:03,696 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-14T15:55:03,696 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-14T15:55:03,696 | ^ 2021-07-14T15:55:03,698 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_insert’: 2021-07-14T15:55:03,703 gat/SegmentList.c:8135:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T15:55:03,703 8135 | if (((__pyx_t_4 > __pyx_t_5) != 0)) { 2021-07-14T15:55:03,703 | ^ 2021-07-14T15:55:03,709 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim’: 2021-07-14T15:55:03,713 gat/SegmentList.c:8396:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-14T15:55:03,713 8396 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-14T15:55:03,713 | ^ 2021-07-14T15:55:03,713 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-14T15:55:03,714 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-14T15:55:03,714 | ^ 2021-07-14T15:55:03,719 gat/SegmentList.c:8464:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,719 8464 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,719 | ^~ 2021-07-14T15:55:03,725 gat/SegmentList.c:8541:31: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,725 8541 | __pyx_t_9 = ((__pyx_v_p == (__pyx_v_self->segments[__pyx_v_idx]).start) != 0); 2021-07-14T15:55:03,726 | ^~ 2021-07-14T15:55:03,730 gat/SegmentList.c:8649:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,730 8649 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,730 | ^~ 2021-07-14T15:55:03,738 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_normalize’: 2021-07-14T15:55:03,742 gat/SegmentList.c:8933:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,743 8933 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,743 | ^ 2021-07-14T15:55:03,749 gat/SegmentList.c:8961:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,749 8961 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,749 | ^~ 2021-07-14T15:55:03,753 gat/SegmentList.c:9030:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,753 9030 | __pyx_t_5 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,754 | ^ 2021-07-14T15:55:03,760 gat/SegmentList.c:9107:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,760 9107 | if (unlikely(!((__pyx_v_insertion_idx < __pyx_v_self->nsegments) != 0))) { 2021-07-14T15:55:03,760 | ^ 2021-07-14T15:55:03,760 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-14T15:55:03,761 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-14T15:55:03,761 | ^ 2021-07-14T15:55:03,767 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_merge’: 2021-07-14T15:55:03,772 gat/SegmentList.c:9449:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,772 9449 | __pyx_t_7 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,772 | ^ 2021-07-14T15:55:03,778 gat/SegmentList.c:9477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,778 9477 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,779 | ^~ 2021-07-14T15:55:03,783 gat/SegmentList.c:9546:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,783 9546 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,783 | ^ 2021-07-14T15:55:03,792 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_check’: 2021-07-14T15:55:03,797 gat/SegmentList.c:9958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,797 9958 | for (__pyx_v_idx = 1; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-14T15:55:03,797 | ^ 2021-07-14T15:55:03,801 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__getInsertionPoint’: 2021-07-14T15:55:03,806 gat/SegmentList.c:10294:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,807 10294 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,807 | ^~ 2021-07-14T15:55:03,820 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlap’: 2021-07-14T15:55:03,825 gat/SegmentList.c:11010:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,825 11010 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,826 | ^~ 2021-07-14T15:55:03,831 gat/SegmentList.c:11078:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,831 11078 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,831 | ^ 2021-07-14T15:55:03,834 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getOverlappingSegments’: 2021-07-14T15:55:03,839 gat/SegmentList.c:11189:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,839 11189 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,840 | ^~ 2021-07-14T15:55:03,845 gat/SegmentList.c:11269:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,845 11269 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,845 | ^ 2021-07-14T15:55:03,874 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlapWithSegments’: 2021-07-14T15:55:03,880 gat/SegmentList.c:12032:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,880 12032 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,881 | ^ 2021-07-14T15:55:03,886 gat/SegmentList.c:12038:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,886 12038 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-14T15:55:03,887 | ^ 2021-07-14T15:55:03,897 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersectionWithSegments’: 2021-07-14T15:55:03,903 gat/SegmentList.c:12580:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,904 12580 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,904 | ^ 2021-07-14T15:55:03,910 gat/SegmentList.c:12586:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,910 12586 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-14T15:55:03,910 | ^ 2021-07-14T15:55:03,919 gat/SegmentList.c:12742:50: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-14T15:55:03,919 12742 | __pyx_t_8 = (__pyx_v_other_segment.start <= __pyx_t_11); 2021-07-14T15:55:03,919 | ^~ 2021-07-14T15:55:03,925 gat/SegmentList.c:12752:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,925 12752 | __pyx_t_8 = (__pyx_t_11 < __pyx_v_other_segment.end); 2021-07-14T15:55:03,925 | ^ 2021-07-14T15:55:03,936 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_36getLengthDistribution’: 2021-07-14T15:55:03,943 gat/SegmentList.c:13254:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,943 13254 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_15; __pyx_v_idx++) { 2021-07-14T15:55:03,943 | ^ 2021-07-14T15:55:03,955 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_truncate’: 2021-07-14T15:55:03,962 gat/SegmentList.c:13543:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,962 13543 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-14T15:55:03,962 | ^ 2021-07-14T15:55:03,969 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_subtract’: 2021-07-14T15:55:03,976 gat/SegmentList.c:13929:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,976 13929 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:03,976 | ^ 2021-07-14T15:55:03,983 gat/SegmentList.c:13935:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,983 13935 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-14T15:55:03,983 | ^ 2021-07-14T15:55:03,993 gat/SegmentList.c:13947:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:03,993 13947 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-14T15:55:03,993 | ^~ 2021-07-14T15:55:04,000 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_summarize’: 2021-07-14T15:55:04,007 gat/SegmentList.c:14519:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,007 14519 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-14T15:55:04,007 | ^ 2021-07-14T15:55:04,015 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromStart’: 2021-07-14T15:55:04,023 gat/SegmentList.c:14800:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,023 14800 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-14T15:55:04,023 | ^ 2021-07-14T15:55:04,033 gat/SegmentList.c:14915:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,034 14915 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:04,034 | ^~ 2021-07-14T15:55:04,045 gat/SegmentList.c:15016:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,045 15016 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:04,045 | ^~ 2021-07-14T15:55:04,057 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromEnd’: 2021-07-14T15:55:04,065 gat/SegmentList.c:15311:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,065 15311 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-14T15:55:04,065 | ^ 2021-07-14T15:55:04,076 gat/SegmentList.c:15426:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,076 15426 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:04,076 | ^~ 2021-07-14T15:55:04,092 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_filter’: 2021-07-14T15:55:04,100 gat/SegmentList.c:15966:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,100 15966 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:04,100 | ^ 2021-07-14T15:55:04,108 gat/SegmentList.c:15972:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,108 15972 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-14T15:55:04,108 | ^ 2021-07-14T15:55:04,119 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersect’: 2021-07-14T15:55:04,128 gat/SegmentList.c:16635:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,128 16635 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-14T15:55:04,128 | ^ 2021-07-14T15:55:04,136 gat/SegmentList.c:16641:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,136 16641 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-14T15:55:04,136 | ^ 2021-07-14T15:55:04,148 gat/SegmentList.c:16821:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,149 16821 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-14T15:55:04,149 | ^~ 2021-07-14T15:55:04,156 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_extend_segments’: 2021-07-14T15:55:04,164 gat/SegmentList.c:17135:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,165 17135 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-14T15:55:04,165 | ^ 2021-07-14T15:55:04,172 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_expand_segments’: 2021-07-14T15:55:04,180 gat/SegmentList.c:17369:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,181 17369 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_7; __pyx_v_idx++) { 2021-07-14T15:55:04,181 | ^ 2021-07-14T15:55:04,183 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_54shift’: 2021-07-14T15:55:04,192 gat/SegmentList.c:17560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,192 17560 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-14T15:55:04,192 | ^ 2021-07-14T15:55:04,198 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_sum’: 2021-07-14T15:55:04,207 gat/SegmentList.c:17732:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,207 17732 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-14T15:55:04,207 | ^ 2021-07-14T15:55:04,208 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_58largest’: 2021-07-14T15:55:04,217 gat/SegmentList.c:17929:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,218 17929 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_3; __pyx_v_idx++) { 2021-07-14T15:55:04,218 | ^ 2021-07-14T15:55:04,248 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_74asList’: 2021-07-14T15:55:04,257 gat/SegmentList.c:19075:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,258 19075 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-14T15:55:04,258 | ^ 2021-07-14T15:55:04,259 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_76asLengths’: 2021-07-14T15:55:04,269 gat/SegmentList.c:19189:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,269 19189 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-14T15:55:04,269 | ^ 2021-07-14T15:55:04,279 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_82compare’: 2021-07-14T15:55:04,289 gat/SegmentList.c:19578:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:04,289 19578 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_8; __pyx_v_idx++) { 2021-07-14T15:55:04,289 | ^ 2021-07-14T15:55:05,273 At top level: 2021-07-14T15:55:05,275 gat/SegmentList.c:3559:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpDouble’ defined but not used [-Wunused-function] 2021-07-14T15:55:05,275 3559 | static int __pyx_f_3gat_11SegmentList_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-14T15:55:05,275 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T15:55:05,277 gat/SegmentList.c:3525:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpPosition’ defined but not used [-Wunused-function] 2021-07-14T15:55:05,277 3525 | static int __pyx_f_3gat_11SegmentList_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-14T15:55:05,277 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T15:55:20,742 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-14T15:55:20,881 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-14T15:55:20,882 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-14T15:55:20,882 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-14T15:55:20,882 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T15:55:20,882 | | 2021-07-14T15:55:20,883 | size_t * {aka unsigned int *} 2021-07-14T15:55:20,883 In file included from /usr/include/zlib.h:34, 2021-07-14T15:55:20,883 from utils/gat_utils.c:2: 2021-07-14T15:55:20,884 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-14T15:55:20,884 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-14T15:55:20,884 | ^~ 2021-07-14T15:55:21,000 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/SegmentList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so 2021-07-14T15:55:21,188 building 'gat.PositionList' extension 2021-07-14T15:55:21,188 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c gat/PositionList.c -o build/temp.linux-armv7l-3.9/gat/PositionList.o 2021-07-14T15:55:21,652 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_normalize’: 2021-07-14T15:55:21,654 gat/PositionList.c:5779:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:21,655 5779 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-14T15:55:21,655 | ^ 2021-07-14T15:55:21,656 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList__resize’: 2021-07-14T15:55:21,659 gat/PositionList.c:5986:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:21,659 5986 | if (unlikely(!((__pyx_v_npositions >= __pyx_v_self->npositions) != 0))) { 2021-07-14T15:55:21,659 | ^~ 2021-07-14T15:55:21,659 gat/PositionList.c:808:43: note: in definition of macro ‘unlikely’ 2021-07-14T15:55:21,660 808 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-14T15:55:21,660 | ^ 2021-07-14T15:55:21,662 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_overlap’: 2021-07-14T15:55:21,665 gat/PositionList.c:6351:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:21,665 6351 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->npositions) != 0); 2021-07-14T15:55:21,666 | ^~ 2021-07-14T15:55:21,670 gat/PositionList.c:6478:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:21,670 6478 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->npositions) != 0); 2021-07-14T15:55:21,670 | ^ 2021-07-14T15:55:21,685 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersectionWithSegments’: 2021-07-14T15:55:21,689 gat/PositionList.c:7014:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:21,689 7014 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-14T15:55:21,689 | ^ 2021-07-14T15:55:21,692 gat/PositionList.c:7020:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:21,692 7020 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-14T15:55:21,692 | ^ 2021-07-14T15:55:21,702 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersect’: 2021-07-14T15:55:21,706 gat/PositionList.c:7554:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:21,706 7554 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-14T15:55:21,706 | ^ 2021-07-14T15:55:21,709 gat/PositionList.c:7560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:21,709 7560 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-14T15:55:21,710 | ^ 2021-07-14T15:55:21,714 gat/PositionList.c: In function ‘__pyx_pf_3gat_12PositionList_12PositionList_30asList’: 2021-07-14T15:55:21,718 gat/PositionList.c:7945:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:21,718 7945 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-14T15:55:21,718 | ^ 2021-07-14T15:55:22,052 At top level: 2021-07-14T15:55:22,053 gat/PositionList.c:1800:18: warning: ‘__pyx_f_3gat_12PositionList_force_bytes’ defined but not used [-Wunused-function] 2021-07-14T15:55:22,053 1800 | static PyObject *__pyx_f_3gat_12PositionList_force_bytes(PyObject *__pyx_v_s, struct __pyx_opt_args_3gat_12PositionList_force_bytes *__pyx_optional_args) { 2021-07-14T15:55:22,054 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T15:55:29,431 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-14T15:55:29,577 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-14T15:55:29,577 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-14T15:55:29,578 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-14T15:55:29,578 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T15:55:29,578 | | 2021-07-14T15:55:29,578 | size_t * {aka unsigned int *} 2021-07-14T15:55:29,578 In file included from /usr/include/zlib.h:34, 2021-07-14T15:55:29,579 from utils/gat_utils.c:2: 2021-07-14T15:55:29,579 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-14T15:55:29,580 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-14T15:55:29,580 | ^~ 2021-07-14T15:55:29,697 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/PositionList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so 2021-07-14T15:55:29,845 building 'gat.Engine' extension 2021-07-14T15:55:29,846 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c gat/Engine.c -o build/temp.linux-armv7l-3.9/gat/Engine.o 2021-07-14T15:55:30,305 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T15:55:30,305 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T15:55:30,305 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T15:55:30,305 from gat/Engine.c:621: 2021-07-14T15:55:30,306 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T15:55:30,306 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T15:55:30,306 | ^~~~~~~ 2021-07-14T15:55:30,439 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_33SegmentListSamplerWithEdgeEffects___init__’: 2021-07-14T15:55:30,443 gat/Engine.c:6588:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-14T15:55:30,444 6588 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-14T15:55:30,444 | ^ 2021-07-14T15:55:30,462 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_18SegmentListSampler___init__’: 2021-07-14T15:55:30,467 gat/Engine.c:7553:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-14T15:55:30,467 7553 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-14T15:55:30,467 | ^ 2021-07-14T15:55:30,473 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_18SegmentListSampler_sample’: 2021-07-14T15:55:30,478 gat/Engine.c:7769:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T15:55:30,479 7769 | __pyx_t_8 = (__pyx_v_segment_index < __pyx_v_self->nsegments); 2021-07-14T15:55:30,479 | ^ 2021-07-14T15:55:30,706 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_12SamplerShift_sample’: 2021-07-14T15:55:30,717 gat/Engine.c:15870:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-14T15:55:30,717 15870 | for (__pyx_v_x = 0; __pyx_v_x < __pyx_t_9; __pyx_v_x++) { 2021-07-14T15:55:30,717 | ^ 2021-07-14T15:55:31,079 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_compressSampleIndex’: 2021-07-14T15:55:31,096 gat/Engine.c:24291:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:31,096 24291 | __pyx_t_3 = ((__pyx_v_observed_idx < __pyx_v_l) != 0); 2021-07-14T15:55:31,096 | ^ 2021-07-14T15:55:31,127 gat/Engine.c:24450:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:31,128 24450 | __pyx_t_2 = ((__pyx_v_x < __pyx_v_l) != 0); 2021-07-14T15:55:31,128 | ^ 2021-07-14T15:55:33,910 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_isSampleSignificantAtPvalue’: 2021-07-14T15:55:33,951 gat/Engine.c:57932:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T15:55:33,951 57932 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_l) != 0); 2021-07-14T15:55:33,951 | ^ 2021-07-14T15:55:40,084 At top level: 2021-07-14T15:55:40,104 gat/Engine.c:24251:13: warning: ‘__pyx_f_3gat_6Engine_compressSampleIndex’ defined but not used [-Wunused-function] 2021-07-14T15:55:40,105 24251 | static void __pyx_f_3gat_6Engine_compressSampleIndex(__pyx_t_3gat_6Engine_EnrichmentStatistics *__pyx_v_stats) { 2021-07-14T15:55:40,105 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T15:55:40,108 gat/Engine.c:5228:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function] 2021-07-14T15:55:40,108 5228 | static int __pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-14T15:55:40,109 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T15:55:40,112 gat/Engine.c:5191:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegments’ defined but not used [-Wunused-function] 2021-07-14T15:55:40,113 5191 | static int __pyx_f_3gat_6Engine_cmpSegments(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-14T15:55:40,113 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T15:56:19,595 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_24SamplerGlobalPermutation_sample’: 2021-07-14T15:56:19,596 gat/Engine.c:526:40: warning: ‘__pyx_v_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-14T15:56:19,596 526 | #define PyInt_FromLong PyLong_FromLong 2021-07-14T15:56:19,596 | ^~~~~~~~~~~~~~~ 2021-07-14T15:56:19,609 gat/Engine.c:17948:49: note: ‘__pyx_v_start’ was declared here 2021-07-14T15:56:19,609 17948 | __pyx_t_3gat_11SegmentList_PositionDifference __pyx_v_start; 2021-07-14T15:56:19,610 | ^~~~~~~~~~~~~ 2021-07-14T15:56:52,826 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-14T15:56:52,983 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-14T15:56:52,983 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-14T15:56:52,984 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-14T15:56:52,984 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T15:56:52,984 | | 2021-07-14T15:56:52,984 | size_t * {aka unsigned int *} 2021-07-14T15:56:52,985 In file included from /usr/include/zlib.h:34, 2021-07-14T15:56:52,986 from utils/gat_utils.c:2: 2021-07-14T15:56:52,986 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-14T15:56:52,986 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-14T15:56:52,986 | ^~ 2021-07-14T15:56:53,102 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/Engine.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so 2021-07-14T15:56:53,519 running build_scripts 2021-07-14T15:56:53,520 creating build/scripts-3.9 2021-07-14T15:56:53,521 copying and adjusting scripts/gat-run.py -> build/scripts-3.9 2021-07-14T15:56:53,524 copying and adjusting scripts/gat-great.py -> build/scripts-3.9 2021-07-14T15:56:53,526 copying and adjusting scripts/gat-compare.py -> build/scripts-3.9 2021-07-14T15:56:53,529 copying and adjusting scripts/gat-plot.py -> build/scripts-3.9 2021-07-14T15:56:53,531 changing mode of build/scripts-3.9/gat-run.py from 644 to 755 2021-07-14T15:56:53,531 changing mode of build/scripts-3.9/gat-great.py from 644 to 755 2021-07-14T15:56:53,531 changing mode of build/scripts-3.9/gat-compare.py from 644 to 755 2021-07-14T15:56:53,532 changing mode of build/scripts-3.9/gat-plot.py from 644 to 755 2021-07-14T15:56:53,542 installing to build/bdist.linux-armv7l/wheel 2021-07-14T15:56:53,542 running install 2021-07-14T15:56:53,543 running install_lib 2021-07-14T15:56:53,548 creating build/bdist.linux-armv7l 2021-07-14T15:56:53,548 creating build/bdist.linux-armv7l/wheel 2021-07-14T15:56:53,550 creating build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,551 copying build/lib.linux-armv7l-3.9/gat/Stats.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,554 copying build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,570 copying build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,669 copying build/lib.linux-armv7l-3.9/gat/__init__.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,672 copying build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,679 copying build/lib.linux-armv7l-3.9/gat/IO.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,681 copying build/lib.linux-armv7l-3.9/gat/Bed.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,684 copying build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,714 copying build/lib.linux-armv7l-3.9/gat/IOTools.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,717 copying build/lib.linux-armv7l-3.9/gat/Experiment.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-14T15:56:53,719 running install_egg_info 2021-07-14T15:56:53,745 running egg_info 2021-07-14T15:56:53,746 writing gat.egg-info/PKG-INFO 2021-07-14T15:56:53,748 writing dependency_links to gat.egg-info/dependency_links.txt 2021-07-14T15:56:53,750 writing requirements to gat.egg-info/requires.txt 2021-07-14T15:56:53,751 writing top-level names to gat.egg-info/top_level.txt 2021-07-14T15:56:53,798 reading manifest file 'gat.egg-info/SOURCES.txt' 2021-07-14T15:56:53,803 reading manifest template 'MANIFEST.in' 2021-07-14T15:56:53,804 warning: no files found matching 'COPYING' 2021-07-14T15:56:53,805 warning: no files found matching 'INSTALL' 2021-07-14T15:56:53,805 warning: no files found matching 'KNOWN_BUGS' 2021-07-14T15:56:53,805 warning: no files found matching 'THANKS' 2021-07-14T15:56:53,814 writing manifest file 'gat.egg-info/SOURCES.txt' 2021-07-14T15:56:53,816 Copying gat.egg-info to build/bdist.linux-armv7l/wheel/gat-1.3.6-py3.9.egg-info 2021-07-14T15:56:53,829 running install_scripts 2021-07-14T15:56:53,853 creating build/bdist.linux-armv7l/wheel/gat-1.3.6.data 2021-07-14T15:56:53,853 creating build/bdist.linux-armv7l/wheel/gat-1.3.6.data/scripts 2021-07-14T15:56:53,855 copying build/scripts-3.9/gat-great.py -> build/bdist.linux-armv7l/wheel/gat-1.3.6.data/scripts 2021-07-14T15:56:53,857 copying build/scripts-3.9/gat-run.py -> build/bdist.linux-armv7l/wheel/gat-1.3.6.data/scripts 2021-07-14T15:56:53,859 copying build/scripts-3.9/gat-plot.py -> build/bdist.linux-armv7l/wheel/gat-1.3.6.data/scripts 2021-07-14T15:56:53,862 copying build/scripts-3.9/gat-compare.py -> build/bdist.linux-armv7l/wheel/gat-1.3.6.data/scripts 2021-07-14T15:56:53,864 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.6.data/scripts/gat-great.py to 755 2021-07-14T15:56:53,864 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.6.data/scripts/gat-run.py to 755 2021-07-14T15:56:53,864 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.6.data/scripts/gat-plot.py to 755 2021-07-14T15:56:53,864 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.6.data/scripts/gat-compare.py to 755 2021-07-14T15:56:53,885 creating build/bdist.linux-armv7l/wheel/gat-1.3.6.dist-info/WHEEL 2021-07-14T15:56:53,888 creating '/tmp/pip-wheel-v9mgdbw_/gat-1.3.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T15:56:53,891 adding 'gat/Bed.py' 2021-07-14T15:56:53,938 adding 'gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T15:56:54,820 adding 'gat/Engine.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T15:56:54,862 adding 'gat/Experiment.py' 2021-07-14T15:56:54,865 adding 'gat/IO.py' 2021-07-14T15:56:54,867 adding 'gat/IOTools.py' 2021-07-14T15:56:54,986 adding 'gat/PositionList.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T15:56:55,225 adding 'gat/SegmentList.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T15:56:55,236 adding 'gat/Stats.py' 2021-07-14T15:56:55,241 adding 'gat/__init__.py' 2021-07-14T15:56:55,244 adding 'gat-1.3.6.data/scripts/gat-compare.py' 2021-07-14T15:56:55,247 adding 'gat-1.3.6.data/scripts/gat-great.py' 2021-07-14T15:56:55,248 adding 'gat-1.3.6.data/scripts/gat-plot.py' 2021-07-14T15:56:55,250 adding 'gat-1.3.6.data/scripts/gat-run.py' 2021-07-14T15:56:55,252 adding 'gat-1.3.6.dist-info/METADATA' 2021-07-14T15:56:55,253 adding 'gat-1.3.6.dist-info/WHEEL' 2021-07-14T15:56:55,254 adding 'gat-1.3.6.dist-info/top_level.txt' 2021-07-14T15:56:55,255 adding 'gat-1.3.6.dist-info/RECORD' 2021-07-14T15:56:55,304 removing build/bdist.linux-armv7l/wheel 2021-07-14T15:56:55,801 Building wheel for gat (setup.py): finished with status 'done' 2021-07-14T15:56:55,841 Created wheel for gat: filename=gat-1.3.6-cp39-cp39-linux_armv7l.whl size=2458765 sha256=c221402148c7573c722188408f4423a6374bd89761d3b80be3d34566e83936be 2021-07-14T15:56:55,841 Stored in directory: /tmp/pip-ephem-wheel-cache-n19kcz92/wheels/0f/bb/29/581462c1558164d4095d560fb7d11fbfa4365fb57496d4f204 2021-07-14T15:56:55,851 Successfully built gat 2021-07-14T15:56:55,942 Removed build tracker: '/tmp/pip-req-tracker-_pyu1wwg'