2021-07-14T16:18:25,762 Created temporary directory: /tmp/pip-ephem-wheel-cache-vgqgwnl7
2021-07-14T16:18:25,766 Created temporary directory: /tmp/pip-req-tracker-l8swse6p
2021-07-14T16:18:25,767 Initialized build tracking at /tmp/pip-req-tracker-l8swse6p
2021-07-14T16:18:25,767 Created build tracker: /tmp/pip-req-tracker-l8swse6p
2021-07-14T16:18:25,768 Entered build tracker: /tmp/pip-req-tracker-l8swse6p
2021-07-14T16:18:25,769 Created temporary directory: /tmp/pip-wheel-kuc9_2oe
2021-07-14T16:18:25,814 1 location(s) to search for versions of hits:
2021-07-14T16:18:25,814 * https://pypi.org/simple/hits/
2021-07-14T16:18:25,815 Fetching project page and analyzing links: https://pypi.org/simple/hits/
2021-07-14T16:18:25,816 Getting page https://pypi.org/simple/hits/
2021-07-14T16:18:25,819 Found index url https://pypi.org/simple
2021-07-14T16:18:25,939   Found link https://files.pythonhosted.org/packages/bd/a4/dab4eb36d5c301d6f60030768d14deae128e5baa9d6344eda764825d5ab7/hits-0.0.2.tar.gz#sha256=c290e0adae5371b003d2b222fe20a107f5e48fee64e3ff34207020df27a2b640 (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.2
2021-07-14T16:18:25,941   Found link https://files.pythonhosted.org/packages/4f/da/e8976e983ced405ede20b732db2cc427af7c93d14dcaf62147303742d7ec/hits-0.0.4.tar.gz#sha256=c42363838f385054dec09818e867cecf074e844d508d0ecdb24a35e33e025c37 (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.4
2021-07-14T16:18:25,943   Found link https://files.pythonhosted.org/packages/3b/b9/f2184537f182cb3456dbe14209b08019a80f064c5ec76ca0e29c01e85b45/hits-0.0.5.tar.gz#sha256=2e28072c28c056e43576bd5c8161aa94b0358d81a01795f8d1f9dd75763f0d92 (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.5
2021-07-14T16:18:25,944   Found link https://files.pythonhosted.org/packages/bc/d3/e1c183519ed10a4c5aecb860080c4d0178419ded77dbfd10b249f991dbca/hits-0.0.6.tar.gz#sha256=5ded6559414f41a88a4e5ff6e9b3b333f6c0257717c083c85a6b5bec6322101f (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.6
2021-07-14T16:18:25,946   Found link https://files.pythonhosted.org/packages/36/12/1e518a921f843e31b49c74080310bd0a99d4bc5701bb9c26e74e4d7e293d/hits-0.0.7.tar.gz#sha256=289008535d0c7dfc0690f26d0b798fc015f9d202a942176f56292851ad9667a7 (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.0.7
2021-07-14T16:18:25,947   Found link https://files.pythonhosted.org/packages/16/eb/7875f9d6728a25ea1ebf15e1b1fd7f17956b6bd984247a9402d3a3354530/hits-0.1.tar.gz#sha256=d522045c7c5f7bb68645c99bf5fde7601ecfb8f13d7c0d94090a5fd84bb86feb (from https://pypi.org/simple/hits/) (requires-python:>=3.6), version: 0.1
2021-07-14T16:18:25,948 Skipping link: not a file: https://pypi.org/simple/hits/
2021-07-14T16:18:25,981 Given no hashes to check 1 links for project 'hits': discarding no candidates
2021-07-14T16:18:26,023 Collecting hits==0.0.5
2021-07-14T16:18:26,026   Created temporary directory: /tmp/pip-unpack-lq837s7f
2021-07-14T16:18:26,477   Downloading hits-0.0.5.tar.gz (1.1 MB)
2021-07-14T16:18:27,253   Added hits==0.0.5 from https://files.pythonhosted.org/packages/3b/b9/f2184537f182cb3456dbe14209b08019a80f064c5ec76ca0e29c01e85b45/hits-0.0.5.tar.gz#sha256=2e28072c28c056e43576bd5c8161aa94b0358d81a01795f8d1f9dd75763f0d92 to build tracker '/tmp/pip-req-tracker-l8swse6p'
2021-07-14T16:18:27,255     Running setup.py (path:/tmp/pip-wheel-kuc9_2oe/hits_3fd672ade4cf4608af0084daf3d1746e/setup.py) egg_info for package hits
2021-07-14T16:18:27,255     Created temporary directory: /tmp/pip-pip-egg-info-2wagi8dr
2021-07-14T16:18:27,256     Running command python setup.py egg_info
2021-07-14T16:18:31,153     running egg_info
2021-07-14T16:18:31,157     creating /tmp/pip-pip-egg-info-2wagi8dr/hits.egg-info
2021-07-14T16:18:31,159     writing /tmp/pip-pip-egg-info-2wagi8dr/hits.egg-info/PKG-INFO
2021-07-14T16:18:31,161     writing dependency_links to /tmp/pip-pip-egg-info-2wagi8dr/hits.egg-info/dependency_links.txt
2021-07-14T16:18:31,164     writing requirements to /tmp/pip-pip-egg-info-2wagi8dr/hits.egg-info/requires.txt
2021-07-14T16:18:31,165     writing top-level names to /tmp/pip-pip-egg-info-2wagi8dr/hits.egg-info/top_level.txt
2021-07-14T16:18:31,168     writing manifest file '/tmp/pip-pip-egg-info-2wagi8dr/hits.egg-info/SOURCES.txt'
2021-07-14T16:18:31,855     reading manifest file '/tmp/pip-pip-egg-info-2wagi8dr/hits.egg-info/SOURCES.txt'
2021-07-14T16:18:31,863     writing manifest file '/tmp/pip-pip-egg-info-2wagi8dr/hits.egg-info/SOURCES.txt'
2021-07-14T16:18:32,107   Source in /tmp/pip-wheel-kuc9_2oe/hits_3fd672ade4cf4608af0084daf3d1746e has version 0.0.5, which satisfies requirement hits==0.0.5 from https://files.pythonhosted.org/packages/3b/b9/f2184537f182cb3456dbe14209b08019a80f064c5ec76ca0e29c01e85b45/hits-0.0.5.tar.gz#sha256=2e28072c28c056e43576bd5c8161aa94b0358d81a01795f8d1f9dd75763f0d92
2021-07-14T16:18:32,109   Removed hits==0.0.5 from https://files.pythonhosted.org/packages/3b/b9/f2184537f182cb3456dbe14209b08019a80f064c5ec76ca0e29c01e85b45/hits-0.0.5.tar.gz#sha256=2e28072c28c056e43576bd5c8161aa94b0358d81a01795f8d1f9dd75763f0d92 from build tracker '/tmp/pip-req-tracker-l8swse6p'
2021-07-14T16:18:32,179 Created temporary directory: /tmp/pip-unpack-d7o2pjd4
2021-07-14T16:18:32,182 Building wheels for collected packages: hits
2021-07-14T16:18:32,200   Created temporary directory: /tmp/pip-wheel-qb6olk67
2021-07-14T16:18:32,201   Building wheel for hits (setup.py): started
2021-07-14T16:18:32,202   Destination directory: /tmp/pip-wheel-qb6olk67
2021-07-14T16:18:32,202   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-kuc9_2oe/hits_3fd672ade4cf4608af0084daf3d1746e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-kuc9_2oe/hits_3fd672ade4cf4608af0084daf3d1746e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qb6olk67
2021-07-14T16:18:35,427   running bdist_wheel
2021-07-14T16:18:35,957   running build
2021-07-14T16:18:35,958   running build_py
2021-07-14T16:18:36,425   creating build
2021-07-14T16:18:36,427   creating build/lib.linux-armv7l-3.9
2021-07-14T16:18:36,429   creating build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,433   copying hits/mapping_tools.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,440   copying hits/adapters.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,446   copying hits/visualize_structure.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,451   copying hits/genomes.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,455   copying hits/utilities.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,459   copying hits/intensities_illumina.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,464   copying hits/__init__.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,467   copying hits/interval.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,472   copying hits/sam.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,478   copying hits/gff.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,481   copying hits/paired_end.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,486   copying hits/annotation.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,489   copying hits/variants.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,493   copying hits/fastq.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,497   copying hits/genetic_code.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,500   copying hits/external_sort.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,504   copying hits/sw.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,508   copying hits/fasta.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,511   copying hits/ipython.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,514   copying hits/bus.py -> build/lib.linux-armv7l-3.9/hits
2021-07-14T16:18:36,518   creating build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T16:18:36,520   copying hits/visualize/__init__.py -> build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T16:18:36,524   copying hits/visualize/define_igv_colors.py -> build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T16:18:36,527   copying hits/visualize/fastq.py -> build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T16:18:36,539   copying hits/visualize/gels.py -> build/lib.linux-armv7l-3.9/hits/visualize
2021-07-14T16:18:36,544   creating build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,545   copying hits/visualize/interactive/external_coffeescript.py -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,548   copying hits/visualize/interactive/__init__.py -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,552   copying hits/visualize/interactive/pc.py -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,569   copying hits/visualize/interactive/screen_errorbars_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,572   copying hits/visualize/interactive/pc_search.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,575   copying hits/visualize/interactive/scatter_label_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,579   copying hits/visualize/interactive/scatter_alpha.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,582   copying hits/visualize/interactive/scatter_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,586   copying hits/visualize/interactive/scatter_size_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,589   copying hits/visualize/interactive/scatter_annotation_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,592   copying hits/visualize/interactive/scatter_cluster_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,595   copying hits/visualize/interactive/scatter_save_button.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,599   copying hits/visualize/interactive/pc_clear.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,602   copying hits/visualize/interactive/pc_box_select.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,606   copying hits/visualize/interactive/scatter_search.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,609   copying hits/visualize/interactive/scatter_two_level_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,612   copying hits/visualize/interactive/scatter_heatmap.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,616   copying hits/visualize/interactive/scatter_grid.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,628   copying hits/visualize/interactive/pc_hover.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,632   copying hits/visualize/interactive/screen_scatter_selection.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,635   copying hits/visualize/interactive/scatter_case_sensitive.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,638   copying hits/visualize/interactive/screen_range.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,644   copying hits/visualize/interactive/screen_significance_filter.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,647   copying hits/visualize/interactive/screen_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,651   copying hits/visualize/interactive/scatter_range.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,654   copying hits/visualize/interactive/scatter_zoom_to_data.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,657   copying hits/visualize/interactive/scatter_label.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,660   copying hits/visualize/interactive/screen_search.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,663   copying hits/visualize/interactive/scatter_selection.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,667   copying hits/visualize/interactive/scatter_size.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,670   copying hits/visualize/interactive/scatter_subset_menu.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,673   copying hits/visualize/interactive/scatter_color.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,677   copying hits/visualize/interactive/pc_selection.coffee -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,680   copying hits/visualize/interactive/example_df.txt -> build/lib.linux-armv7l-3.9/hits/visualize/interactive
2021-07-14T16:18:36,786   running build_ext
2021-07-14T16:18:36,799   cythoning hits/adapters_cython.pyx to hits/adapters_cython.c
2021-07-14T16:18:38,443   cythoning hits/fastq_cython.pyx to hits/fastq_cython.c
2021-07-14T16:18:55,081   cythoning hits/sw_cython.pyx to hits/sw_cython.c
2021-07-14T16:19:09,745   building 'adapters_cython' extension
2021-07-14T16:19:09,746   creating build/temp.linux-armv7l-3.9
2021-07-14T16:19:09,747   creating build/temp.linux-armv7l-3.9/hits
2021-07-14T16:19:09,749   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c hits/adapters_cython.c -o build/temp.linux-armv7l-3.9/hits/adapters_cython.o
2021-07-14T16:19:14,822   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/hits/adapters_cython.o -o build/lib.linux-armv7l-3.9/hits/adapters_cython.cpython-39-arm-linux-gnueabihf.so
2021-07-14T16:19:15,094   building 'fastq_cython' extension
2021-07-14T16:19:15,095   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c hits/fastq_cython.c -o build/temp.linux-armv7l-3.9/hits/fastq_cython.o
2021-07-14T16:19:16,049   hits/fastq_cython.c: In function ‘__pyx_pf_12fastq_cython_2process_read’:
2021-07-14T16:19:16,050   hits/fastq_cython.c:2645:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-14T16:19:16,050    2645 |     __pyx_t_6 = ((__pyx_v_q >= __pyx_v_min_q) != 0);
2021-07-14T16:19:16,051         |                             ^~
2021-07-14T16:19:16,059   hits/fastq_cython.c: In function ‘__pyx_pf_12fastq_cython_4process_Alignment’:
2021-07-14T16:19:16,060   hits/fastq_cython.c:2919:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-14T16:19:16,060    2919 |     __pyx_t_6 = ((__pyx_v_q >= __pyx_v_min_q) != 0);
2021-07-14T16:19:16,061         |                             ^~
2021-07-14T16:19:41,877   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/hits/fastq_cython.o -o build/lib.linux-armv7l-3.9/hits/fastq_cython.cpython-39-arm-linux-gnueabihf.so
2021-07-14T16:19:42,112   building 'sw_cython' extension
2021-07-14T16:19:42,112   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c hits/sw_cython.c -o build/temp.linux-armv7l-3.9/hits/sw_cython.o
2021-07-14T16:19:43,008   hits/sw_cython.c: In function ‘__pyx_pf_9sw_cython_generate_matrices’:
2021-07-14T16:19:43,010   hits/sw_cython.c:2660:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2021-07-14T16:19:43,010    2660 |     for (__pyx_t_11 = 1; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
2021-07-14T16:19:43,011         |                                     ^
2021-07-14T16:19:43,015   hits/sw_cython.c:2721:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2021-07-14T16:19:43,016    2721 |     for (__pyx_t_11 = 1; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
2021-07-14T16:19:43,016         |                                     ^
2021-07-14T16:19:43,031   hits/sw_cython.c:2796:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2021-07-14T16:19:43,031    2796 |   for (__pyx_t_11 = 1; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
2021-07-14T16:19:43,032         |                                   ^
2021-07-14T16:19:43,033   hits/sw_cython.c:2809:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2021-07-14T16:19:43,033    2809 |     for (__pyx_t_18 = 1; __pyx_t_18 < __pyx_t_17; __pyx_t_18+=1) {
2021-07-14T16:19:43,034         |                                     ^
2021-07-14T16:19:43,226   hits/sw_cython.c: In function ‘__pyx_pf_9sw_cython_4extend_perfect_seed’:
2021-07-14T16:19:43,238   hits/sw_cython.c:4865:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-14T16:19:43,239    4865 |     __pyx_t_2 = ((__pyx_v_query_end < __pyx_t_3) != 0);
2021-07-14T16:19:43,239         |                                     ^
2021-07-14T16:19:43,248   hits/sw_cython.c:4872:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-14T16:19:43,249    4872 |     __pyx_t_2 = ((__pyx_v_target_end < __pyx_t_3) != 0);
2021-07-14T16:19:43,249         |                                      ^
2021-07-14T16:19:43,275   hits/sw_cython.c: In function ‘__pyx_pf_9sw_cython_6extend_perfect_seed_with_one_nt_deletion’:
2021-07-14T16:19:43,278   hits/sw_cython.c:5187:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-14T16:19:43,278    5187 |     __pyx_t_2 = ((__pyx_v_query_end < __pyx_t_4) != 0);
2021-07-14T16:19:43,279         |                                     ^
2021-07-14T16:19:43,301   hits/sw_cython.c:5194:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-14T16:19:43,301    5194 |     __pyx_t_2 = ((__pyx_v_target_end < __pyx_t_4) != 0);
2021-07-14T16:19:43,302         |                                      ^
2021-07-14T16:20:09,872   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/hits/sw_cython.o -o build/lib.linux-armv7l-3.9/hits/sw_cython.cpython-39-arm-linux-gnueabihf.so
2021-07-14T16:20:10,347   installing to build/bdist.linux-armv7l/wheel
2021-07-14T16:20:10,347   running install
2021-07-14T16:20:10,351   running install_lib
2021-07-14T16:20:10,380   creating build/bdist.linux-armv7l
2021-07-14T16:20:10,380   creating build/bdist.linux-armv7l/wheel
2021-07-14T16:20:10,384   creating build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,385   copying build/lib.linux-armv7l-3.9/hits/mapping_tools.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,390   copying build/lib.linux-armv7l-3.9/hits/adapters.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,393   copying build/lib.linux-armv7l-3.9/hits/visualize_structure.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,397   copying build/lib.linux-armv7l-3.9/hits/genomes.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,401   copying build/lib.linux-armv7l-3.9/hits/adapters_cython.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,414   copying build/lib.linux-armv7l-3.9/hits/utilities.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,418   copying build/lib.linux-armv7l-3.9/hits/intensities_illumina.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,423   copying build/lib.linux-armv7l-3.9/hits/sw_cython.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,465   copying build/lib.linux-armv7l-3.9/hits/__init__.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,479   copying build/lib.linux-armv7l-3.9/hits/interval.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,486   copying build/lib.linux-armv7l-3.9/hits/sam.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,493   copying build/lib.linux-armv7l-3.9/hits/gff.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,498   copying build/lib.linux-armv7l-3.9/hits/paired_end.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,510   copying build/lib.linux-armv7l-3.9/hits/annotation.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,514   copying build/lib.linux-armv7l-3.9/hits/variants.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,520   copying build/lib.linux-armv7l-3.9/hits/fastq.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,532   copying build/lib.linux-armv7l-3.9/hits/genetic_code.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,537   creating build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T16:20:10,541   copying build/lib.linux-armv7l-3.9/hits/visualize/__init__.py -> build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T16:20:10,549   creating build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,558   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_errorbars_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,564   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_search.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,568   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_label_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,572   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/example_df.txt -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,642   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_alpha.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,645   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/external_coffeescript.py -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,648   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,652   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/__init__.py -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,657   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_size_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,661   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_annotation_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,664   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_cluster_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,667   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_save_button.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,682   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_clear.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,687   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_box_select.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,693   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_search.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,698   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_two_level_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,702   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_heatmap.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,707   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_grid.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,712   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_hover.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,718   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_scatter_selection.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,722   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_case_sensitive.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,726   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_range.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,731   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_significance_filter.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,735   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,740   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_range.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,745   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_zoom_to_data.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,749   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc.py -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,754   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_label.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,758   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/screen_search.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,763   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_selection.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,768   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_size.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,772   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_subset_menu.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,776   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/scatter_color.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,781   copying build/lib.linux-armv7l-3.9/hits/visualize/interactive/pc_selection.coffee -> build/bdist.linux-armv7l/wheel/hits/visualize/interactive
2021-07-14T16:20:10,786   copying build/lib.linux-armv7l-3.9/hits/visualize/define_igv_colors.py -> build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T16:20:10,791   copying build/lib.linux-armv7l-3.9/hits/visualize/fastq.py -> build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T16:20:10,795   copying build/lib.linux-armv7l-3.9/hits/visualize/gels.py -> build/bdist.linux-armv7l/wheel/hits/visualize
2021-07-14T16:20:10,800   copying build/lib.linux-armv7l-3.9/hits/external_sort.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,803   copying build/lib.linux-armv7l-3.9/hits/sw.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,808   copying build/lib.linux-armv7l-3.9/hits/fasta.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,812   copying build/lib.linux-armv7l-3.9/hits/ipython.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,817   copying build/lib.linux-armv7l-3.9/hits/fastq_cython.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,872   copying build/lib.linux-armv7l-3.9/hits/bus.py -> build/bdist.linux-armv7l/wheel/hits
2021-07-14T16:20:10,874   running install_egg_info
2021-07-14T16:20:10,913   running egg_info
2021-07-14T16:20:10,914   writing hits.egg-info/PKG-INFO
2021-07-14T16:20:10,917   writing dependency_links to hits.egg-info/dependency_links.txt
2021-07-14T16:20:10,921   writing requirements to hits.egg-info/requires.txt
2021-07-14T16:20:10,923   writing top-level names to hits.egg-info/top_level.txt
2021-07-14T16:20:10,995   reading manifest file 'hits.egg-info/SOURCES.txt'
2021-07-14T16:20:11,006   writing manifest file 'hits.egg-info/SOURCES.txt'
2021-07-14T16:20:11,011   Copying hits.egg-info to build/bdist.linux-armv7l/wheel/hits-0.0.5-py3.9.egg-info
2021-07-14T16:20:11,034   running install_scripts
2021-07-14T16:20:11,121   creating build/bdist.linux-armv7l/wheel/hits-0.0.5.dist-info/WHEEL
2021-07-14T16:20:11,126   creating '/tmp/pip-wheel-qb6olk67/hits-0.0.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T16:20:11,140   adding 'hits/__init__.py'
2021-07-14T16:20:11,142   adding 'hits/adapters.py'
2021-07-14T16:20:11,195   adding 'hits/adapters_cython.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T16:20:11,220   adding 'hits/annotation.py'
2021-07-14T16:20:11,222   adding 'hits/bus.py'
2021-07-14T16:20:11,224   adding 'hits/external_sort.py'
2021-07-14T16:20:11,227   adding 'hits/fasta.py'
2021-07-14T16:20:11,230   adding 'hits/fastq.py'
2021-07-14T16:20:11,700   adding 'hits/fastq_cython.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T16:20:11,716   adding 'hits/genetic_code.py'
2021-07-14T16:20:11,718   adding 'hits/genomes.py'
2021-07-14T16:20:11,721   adding 'hits/gff.py'
2021-07-14T16:20:11,724   adding 'hits/intensities_illumina.py'
2021-07-14T16:20:11,727   adding 'hits/interval.py'
2021-07-14T16:20:11,729   adding 'hits/ipython.py'
2021-07-14T16:20:11,734   adding 'hits/mapping_tools.py'
2021-07-14T16:20:11,739   adding 'hits/paired_end.py'
2021-07-14T16:20:11,749   adding 'hits/sam.py'
2021-07-14T16:20:11,754   adding 'hits/sw.py'
2021-07-14T16:20:12,103   adding 'hits/sw_cython.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T16:20:12,114   adding 'hits/utilities.py'
2021-07-14T16:20:12,118   adding 'hits/variants.py'
2021-07-14T16:20:12,122   adding 'hits/visualize_structure.py'
2021-07-14T16:20:12,126   adding 'hits/visualize/__init__.py'
2021-07-14T16:20:12,128   adding 'hits/visualize/define_igv_colors.py'
2021-07-14T16:20:12,130   adding 'hits/visualize/fastq.py'
2021-07-14T16:20:12,134   adding 'hits/visualize/gels.py'
2021-07-14T16:20:12,154   adding 'hits/visualize/interactive/__init__.py'
2021-07-14T16:20:13,152   adding 'hits/visualize/interactive/example_df.txt'
2021-07-14T16:20:13,200   adding 'hits/visualize/interactive/external_coffeescript.py'
2021-07-14T16:20:13,202   adding 'hits/visualize/interactive/pc.py'
2021-07-14T16:20:13,204   adding 'hits/visualize/interactive/pc_box_select.coffee'
2021-07-14T16:20:13,206   adding 'hits/visualize/interactive/pc_clear.coffee'
2021-07-14T16:20:13,208   adding 'hits/visualize/interactive/pc_hover.coffee'
2021-07-14T16:20:13,217   adding 'hits/visualize/interactive/pc_search.coffee'
2021-07-14T16:20:13,220   adding 'hits/visualize/interactive/pc_selection.coffee'
2021-07-14T16:20:13,222   adding 'hits/visualize/interactive/scatter_alpha.coffee'
2021-07-14T16:20:13,224   adding 'hits/visualize/interactive/scatter_annotation_button.coffee'
2021-07-14T16:20:13,226   adding 'hits/visualize/interactive/scatter_case_sensitive.coffee'
2021-07-14T16:20:13,228   adding 'hits/visualize/interactive/scatter_cluster_button.coffee'
2021-07-14T16:20:13,239   adding 'hits/visualize/interactive/scatter_color.coffee'
2021-07-14T16:20:13,241   adding 'hits/visualize/interactive/scatter_grid.coffee'
2021-07-14T16:20:13,243   adding 'hits/visualize/interactive/scatter_heatmap.coffee'
2021-07-14T16:20:13,245   adding 'hits/visualize/interactive/scatter_label.coffee'
2021-07-14T16:20:13,246   adding 'hits/visualize/interactive/scatter_label_button.coffee'
2021-07-14T16:20:13,251   adding 'hits/visualize/interactive/scatter_menu.coffee'
2021-07-14T16:20:13,256   adding 'hits/visualize/interactive/scatter_range.coffee'
2021-07-14T16:20:13,258   adding 'hits/visualize/interactive/scatter_save_button.coffee'
2021-07-14T16:20:13,261   adding 'hits/visualize/interactive/scatter_search.coffee'
2021-07-14T16:20:13,267   adding 'hits/visualize/interactive/scatter_selection.coffee'
2021-07-14T16:20:13,285   adding 'hits/visualize/interactive/scatter_size.coffee'
2021-07-14T16:20:13,290   adding 'hits/visualize/interactive/scatter_size_menu.coffee'
2021-07-14T16:20:13,292   adding 'hits/visualize/interactive/scatter_subset_menu.coffee'
2021-07-14T16:20:13,294   adding 'hits/visualize/interactive/scatter_two_level_menu.coffee'
2021-07-14T16:20:13,299   adding 'hits/visualize/interactive/scatter_zoom_to_data.coffee'
2021-07-14T16:20:13,301   adding 'hits/visualize/interactive/screen_errorbars_button.coffee'
2021-07-14T16:20:13,303   adding 'hits/visualize/interactive/screen_menu.coffee'
2021-07-14T16:20:13,305   adding 'hits/visualize/interactive/screen_range.coffee'
2021-07-14T16:20:13,308   adding 'hits/visualize/interactive/screen_scatter_selection.coffee'
2021-07-14T16:20:13,310   adding 'hits/visualize/interactive/screen_search.coffee'
2021-07-14T16:20:13,311   adding 'hits/visualize/interactive/screen_significance_filter.coffee'
2021-07-14T16:20:13,314   adding 'hits-0.0.5.dist-info/METADATA'
2021-07-14T16:20:13,316   adding 'hits-0.0.5.dist-info/WHEEL'
2021-07-14T16:20:13,319   adding 'hits-0.0.5.dist-info/top_level.txt'
2021-07-14T16:20:13,322   adding 'hits-0.0.5.dist-info/RECORD'
2021-07-14T16:20:13,358   removing build/bdist.linux-armv7l/wheel
2021-07-14T16:20:14,115   Building wheel for hits (setup.py): finished with status 'done'
2021-07-14T16:20:14,170   Created wheel for hits: filename=hits-0.0.5-cp39-cp39-linux_armv7l.whl size=1790306 sha256=c356a15220764f7c2a991d778edda826574d5428f56fb47fa994cf2578309c63
2021-07-14T16:20:14,171   Stored in directory: /tmp/pip-ephem-wheel-cache-vgqgwnl7/wheels/18/79/7c/0f1d08feb80f948844eeed421788f70985bd5bb49f66d17eea
2021-07-14T16:20:14,199 Successfully built hits
2021-07-14T16:20:14,279 Removed build tracker: '/tmp/pip-req-tracker-l8swse6p'