2021-07-14T17:29:44,672 Created temporary directory: /tmp/pip-ephem-wheel-cache-u17ca07z 2021-07-14T17:29:44,675 Created temporary directory: /tmp/pip-req-tracker-wtx88nth 2021-07-14T17:29:44,675 Initialized build tracking at /tmp/pip-req-tracker-wtx88nth 2021-07-14T17:29:44,675 Created build tracker: /tmp/pip-req-tracker-wtx88nth 2021-07-14T17:29:44,676 Entered build tracker: /tmp/pip-req-tracker-wtx88nth 2021-07-14T17:29:44,676 Created temporary directory: /tmp/pip-wheel-9n0_bktg 2021-07-14T17:29:44,705 1 location(s) to search for versions of unifrac: 2021-07-14T17:29:44,705 * https://pypi.org/simple/unifrac/ 2021-07-14T17:29:44,706 Fetching project page and analyzing links: https://pypi.org/simple/unifrac/ 2021-07-14T17:29:44,706 Getting page https://pypi.org/simple/unifrac/ 2021-07-14T17:29:44,708 Found index url https://pypi.org/simple 2021-07-14T17:29:44,888 Found link https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz#sha256=94b4a1b146b35ee7f855ae602cedfab2ca179cc87e397d535fd3e7f64d4d7349 (from https://pypi.org/simple/unifrac/), version: 0.10.0 2021-07-14T17:29:44,888 Found link https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz#sha256=e851bd56269d16b5d005e20c92af4c566bf98ceebca4901085cdb68df6183afd (from https://pypi.org/simple/unifrac/), version: 0.20.1 2021-07-14T17:29:44,889 Skipping link: not a file: https://pypi.org/simple/unifrac/ 2021-07-14T17:29:44,906 Given no hashes to check 1 links for project 'unifrac': discarding no candidates 2021-07-14T17:29:44,925 Collecting unifrac==0.10.0 2021-07-14T17:29:44,926 Created temporary directory: /tmp/pip-unpack-xjed4r_5 2021-07-14T17:29:45,195 Downloading unifrac-0.10.0.tar.gz (219 kB) 2021-07-14T17:29:45,406 Added unifrac==0.10.0 from https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz#sha256=94b4a1b146b35ee7f855ae602cedfab2ca179cc87e397d535fd3e7f64d4d7349 to build tracker '/tmp/pip-req-tracker-wtx88nth' 2021-07-14T17:29:45,407 Running setup.py (path:/tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/setup.py) egg_info for package unifrac 2021-07-14T17:29:45,408 Created temporary directory: /tmp/pip-pip-egg-info-lakpi7lt 2021-07-14T17:29:45,408 Running command python setup.py egg_info 2021-07-14T17:29:47,341 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/unifrac/_api.pxd 2021-07-14T17:29:47,341 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T17:29:53,848 Compiling unifrac/_api.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-14T17:29:53,848 [1/1] Cythonizing unifrac/_api.pyx 2021-07-14T17:29:54,040 running egg_info 2021-07-14T17:29:54,042 creating /tmp/pip-pip-egg-info-lakpi7lt/unifrac.egg-info 2021-07-14T17:29:54,043 writing /tmp/pip-pip-egg-info-lakpi7lt/unifrac.egg-info/PKG-INFO 2021-07-14T17:29:54,046 writing dependency_links to /tmp/pip-pip-egg-info-lakpi7lt/unifrac.egg-info/dependency_links.txt 2021-07-14T17:29:54,048 writing requirements to /tmp/pip-pip-egg-info-lakpi7lt/unifrac.egg-info/requires.txt 2021-07-14T17:29:54,049 writing top-level names to /tmp/pip-pip-egg-info-lakpi7lt/unifrac.egg-info/top_level.txt 2021-07-14T17:29:54,051 writing manifest file '/tmp/pip-pip-egg-info-lakpi7lt/unifrac.egg-info/SOURCES.txt' 2021-07-14T17:29:54,333 reading manifest file '/tmp/pip-pip-egg-info-lakpi7lt/unifrac.egg-info/SOURCES.txt' 2021-07-14T17:29:54,334 reading manifest template 'MANIFEST.in' 2021-07-14T17:29:54,342 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-14T17:29:54,343 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-14T17:29:54,343 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-14T17:29:54,344 warning: no previously-included files matching '*.so' found anywhere in distribution 2021-07-14T17:29:54,344 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2021-07-14T17:29:54,348 writing manifest file '/tmp/pip-pip-egg-info-lakpi7lt/unifrac.egg-info/SOURCES.txt' 2021-07-14T17:29:54,630 Source in /tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81 has version 0.10.0, which satisfies requirement unifrac==0.10.0 from https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz#sha256=94b4a1b146b35ee7f855ae602cedfab2ca179cc87e397d535fd3e7f64d4d7349 2021-07-14T17:29:54,631 Removed unifrac==0.10.0 from https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz#sha256=94b4a1b146b35ee7f855ae602cedfab2ca179cc87e397d535fd3e7f64d4d7349 from build tracker '/tmp/pip-req-tracker-wtx88nth' 2021-07-14T17:29:54,636 Created temporary directory: /tmp/pip-unpack-0yqcwu8h 2021-07-14T17:29:54,637 Building wheels for collected packages: unifrac 2021-07-14T17:29:54,641 Created temporary directory: /tmp/pip-wheel-ygpakg77 2021-07-14T17:29:54,642 Building wheel for unifrac (setup.py): started 2021-07-14T17:29:54,642 Destination directory: /tmp/pip-wheel-ygpakg77 2021-07-14T17:29:54,642 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ygpakg77 2021-07-14T17:29:56,583 running bdist_wheel 2021-07-14T17:29:56,588 running build 2021-07-14T17:29:56,588 running build_py 2021-07-14T17:29:56,722 creating build 2021-07-14T17:29:56,722 creating build/lib.linux-armv7l-3.9 2021-07-14T17:29:56,723 creating build/lib.linux-armv7l-3.9/unifrac 2021-07-14T17:29:56,724 copying unifrac/_methods.py -> build/lib.linux-armv7l-3.9/unifrac 2021-07-14T17:29:56,726 copying unifrac/__init__.py -> build/lib.linux-armv7l-3.9/unifrac 2021-07-14T17:29:56,728 copying unifrac/_meta.py -> build/lib.linux-armv7l-3.9/unifrac 2021-07-14T17:29:56,731 creating build/lib.linux-armv7l-3.9/unifrac/tests 2021-07-14T17:29:56,731 copying unifrac/tests/test_api.py -> build/lib.linux-armv7l-3.9/unifrac/tests 2021-07-14T17:29:56,734 copying unifrac/tests/__init__.py -> build/lib.linux-armv7l-3.9/unifrac/tests 2021-07-14T17:29:56,736 copying unifrac/tests/test_methods.py -> build/lib.linux-armv7l-3.9/unifrac/tests 2021-07-14T17:29:56,739 creating build/lib.linux-armv7l-3.9/unifrac/tests/data 2021-07-14T17:29:56,740 copying unifrac/tests/data/test.faith.exp -> build/lib.linux-armv7l-3.9/unifrac/tests/data 2021-07-14T17:29:56,742 copying unifrac/tests/data/e2.biom -> build/lib.linux-armv7l-3.9/unifrac/tests/data 2021-07-14T17:29:56,745 copying unifrac/tests/data/t1.newick -> build/lib.linux-armv7l-3.9/unifrac/tests/data 2021-07-14T17:29:56,748 copying unifrac/tests/data/crawford.biom -> build/lib.linux-armv7l-3.9/unifrac/tests/data 2021-07-14T17:29:56,754 copying unifrac/tests/data/e1.biom -> build/lib.linux-armv7l-3.9/unifrac/tests/data 2021-07-14T17:29:56,758 copying unifrac/tests/data/t2.newick -> build/lib.linux-armv7l-3.9/unifrac/tests/data 2021-07-14T17:29:56,760 copying unifrac/tests/data/crawford.tre -> build/lib.linux-armv7l-3.9/unifrac/tests/data 2021-07-14T17:29:56,765 running build_ext 2021-07-14T17:29:56,766 Compiling SSU 2021-07-14T17:29:57,119 rm -f *.o ssu 2021-07-14T17:29:57,429 h5c++ -mfma -march=native -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c tree.cpp -o tree.o 2021-07-14T17:29:57,470 arm-linux-gnueabihf-g++: error: unrecognized command-line option ‘-mfma’ 2021-07-14T17:29:57,472 make: *** [Makefile:70: tree.o] Error 1 2021-07-14T17:29:57,473 Traceback (most recent call last): 2021-07-14T17:29:57,473 File "", line 1, in 2021-07-14T17:29:57,473 File "/tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/setup.py", line 94, in 2021-07-14T17:29:57,474 setup( 2021-07-14T17:29:57,474 File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 153, in setup 2021-07-14T17:29:57,475 return distutils.core.setup(**attrs) 2021-07-14T17:29:57,475 File "/usr/lib/python3.9/distutils/core.py", line 148, in setup 2021-07-14T17:29:57,475 dist.run_commands() 2021-07-14T17:29:57,476 File "/usr/lib/python3.9/distutils/dist.py", line 966, in run_commands 2021-07-14T17:29:57,476 self.run_command(cmd) 2021-07-14T17:29:57,477 File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command 2021-07-14T17:29:57,478 cmd_obj.run() 2021-07-14T17:29:57,478 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 223, in run 2021-07-14T17:29:57,478 self.run_command('build') 2021-07-14T17:29:57,478 File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command 2021-07-14T17:29:57,479 self.distribution.run_command(command) 2021-07-14T17:29:57,479 File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command 2021-07-14T17:29:57,480 cmd_obj.run() 2021-07-14T17:29:57,480 File "/usr/lib/python3.9/distutils/command/build.py", line 135, in run 2021-07-14T17:29:57,481 self.run_command(cmd_name) 2021-07-14T17:29:57,481 File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command 2021-07-14T17:29:57,481 self.distribution.run_command(command) 2021-07-14T17:29:57,481 File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command 2021-07-14T17:29:57,482 cmd_obj.run() 2021-07-14T17:29:57,482 File "/tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/setup.py", line 61, in run 2021-07-14T17:29:57,483 self.run_compile_ssu() 2021-07-14T17:29:57,483 File "/tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/setup.py", line 65, in run_compile_ssu 2021-07-14T17:29:57,483 self.execute(compile_ssu, [], 'Compiling SSU') 2021-07-14T17:29:57,483 File "/usr/lib/python3.9/distutils/cmd.py", line 335, in execute 2021-07-14T17:29:57,484 util.execute(func, args, msg, dry_run=self.dry_run) 2021-07-14T17:29:57,484 File "/usr/lib/python3.9/distutils/util.py", line 304, in execute 2021-07-14T17:29:57,485 func(*args) 2021-07-14T17:29:57,485 File "/tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/setup.py", line 44, in compile_ssu 2021-07-14T17:29:57,485 raise Exception('Error compiling ssu!') 2021-07-14T17:29:57,485 Exception: Error compiling ssu! 2021-07-14T17:29:57,629 Building wheel for unifrac (setup.py): finished with status 'error' 2021-07-14T17:29:57,630 ERROR: Failed building wheel for unifrac 2021-07-14T17:29:57,630 Running setup.py clean for unifrac 2021-07-14T17:29:57,631 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-9n0_bktg/unifrac_ba7106fa42414746a76fea97f462bf81/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-14T17:29:59,586 running clean 2021-07-14T17:29:59,589 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-14T17:29:59,596 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-14T17:29:59,596 'build/scripts-3.9' does not exist -- can't clean it 2021-07-14T17:29:59,596 removing 'build' 2021-07-14T17:29:59,716 Failed to build unifrac 2021-07-14T17:29:59,717 ERROR: Failed to build one or more wheels 2021-07-14T17:29:59,718 Exception information: 2021-07-14T17:29:59,718 Traceback (most recent call last): 2021-07-14T17:29:59,718 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-14T17:29:59,718 status = self.run(options, args) 2021-07-14T17:29:59,718 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-14T17:29:59,718 return func(self, options, args) 2021-07-14T17:29:59,718 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-14T17:29:59,718 raise CommandError( 2021-07-14T17:29:59,718 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-14T17:29:59,939 Removed build tracker: '/tmp/pip-req-tracker-wtx88nth'