2021-07-14T17:55:14,177 Created temporary directory: /tmp/pip-ephem-wheel-cache-q5x1o2rj
2021-07-14T17:55:14,180 Created temporary directory: /tmp/pip-req-tracker-l5mglll4
2021-07-14T17:55:14,181 Initialized build tracking at /tmp/pip-req-tracker-l5mglll4
2021-07-14T17:55:14,182 Created build tracker: /tmp/pip-req-tracker-l5mglll4
2021-07-14T17:55:14,182 Entered build tracker: /tmp/pip-req-tracker-l5mglll4
2021-07-14T17:55:14,183 Created temporary directory: /tmp/pip-wheel-0a68paqe
2021-07-14T17:55:14,212 1 location(s) to search for versions of uga:
2021-07-14T17:55:14,212 * https://pypi.org/simple/uga/
2021-07-14T17:55:14,213 Fetching project page and analyzing links: https://pypi.org/simple/uga/
2021-07-14T17:55:14,213 Getting page https://pypi.org/simple/uga/
2021-07-14T17:55:14,215 Found index url https://pypi.org/simple
2021-07-14T17:55:14,311   Found link https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz#sha256=3c47efccfbf3b8d069d31c5644a7e1c2f174d801b25c1cbce312256aa73ef185 (from https://pypi.org/simple/uga/), version: 2.0
2021-07-14T17:55:14,312   Found link https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598 (from https://pypi.org/simple/uga/), version: 2.0.1
2021-07-14T17:55:14,312   Found link https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba (from https://pypi.org/simple/uga/), version: 2.0.2
2021-07-14T17:55:14,313   Found link https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d (from https://pypi.org/simple/uga/), version: 2.0.3
2021-07-14T17:55:14,313   Found link https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581 (from https://pypi.org/simple/uga/), version: 2.0.4
2021-07-14T17:55:14,314   Found link https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e (from https://pypi.org/simple/uga/), version: 2.0.5
2021-07-14T17:55:14,314   Found link https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5 (from https://pypi.org/simple/uga/), version: 2.0.6
2021-07-14T17:55:14,314   Found link https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67 (from https://pypi.org/simple/uga/), version: 2.0.7
2021-07-14T17:55:14,315 Skipping link: not a file: https://pypi.org/simple/uga/
2021-07-14T17:55:14,335 Given no hashes to check 1 links for project 'uga': discarding no candidates
2021-07-14T17:55:14,355 Collecting uga==2.0.1
2021-07-14T17:55:14,356   Created temporary directory: /tmp/pip-unpack-0zg3_fsk
2021-07-14T17:55:14,806   Downloading uga-2.0.1.tar.gz (727 kB)
2021-07-14T17:55:15,302   Added uga==2.0.1 from https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598 to build tracker '/tmp/pip-req-tracker-l5mglll4'
2021-07-14T17:55:15,303     Running setup.py (path:/tmp/pip-wheel-0a68paqe/uga_8ecc4416d23e4503861ee3ac8db9813b/setup.py) egg_info for package uga
2021-07-14T17:55:15,303     Created temporary directory: /tmp/pip-pip-egg-info-ko8_jlxg
2021-07-14T17:55:15,304     Running command python setup.py egg_info
2021-07-14T17:55:17,528     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0a68paqe/uga_8ecc4416d23e4503861ee3ac8db9813b/uga/Geno.pxd
2021-07-14T17:55:17,529       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T17:55:27,713     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0a68paqe/uga_8ecc4416d23e4503861ee3ac8db9813b/uga/Model.pyx
2021-07-14T17:55:27,713       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T17:55:39,965     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0a68paqe/uga_8ecc4416d23e4503861ee3ac8db9813b/uga/Variant.pxd
2021-07-14T17:55:39,965       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T17:55:43,014     Compiling uga/Geno.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T17:55:43,014     Compiling uga/Model.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T17:55:43,015     Compiling uga/Variant.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T17:55:43,015     [1/3] Cythonizing uga/Geno.pyx
2021-07-14T17:55:43,015     [2/3] Cythonizing uga/Model.pyx
2021-07-14T17:55:43,016     [3/3] Cythonizing uga/Variant.pyx
2021-07-14T17:55:43,072     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T17:55:43,072       warnings.warn(
2021-07-14T17:55:43,260     running egg_info
2021-07-14T17:55:43,264     creating /tmp/pip-pip-egg-info-ko8_jlxg/uga.egg-info
2021-07-14T17:55:43,265     writing /tmp/pip-pip-egg-info-ko8_jlxg/uga.egg-info/PKG-INFO
2021-07-14T17:55:43,269     writing dependency_links to /tmp/pip-pip-egg-info-ko8_jlxg/uga.egg-info/dependency_links.txt
2021-07-14T17:55:43,270     writing entry points to /tmp/pip-pip-egg-info-ko8_jlxg/uga.egg-info/entry_points.txt
2021-07-14T17:55:43,272     writing requirements to /tmp/pip-pip-egg-info-ko8_jlxg/uga.egg-info/requires.txt
2021-07-14T17:55:43,273     writing top-level names to /tmp/pip-pip-egg-info-ko8_jlxg/uga.egg-info/top_level.txt
2021-07-14T17:55:43,275     writing manifest file '/tmp/pip-pip-egg-info-ko8_jlxg/uga.egg-info/SOURCES.txt'
2021-07-14T17:55:43,464     reading manifest file '/tmp/pip-pip-egg-info-ko8_jlxg/uga.egg-info/SOURCES.txt'
2021-07-14T17:55:43,466     reading manifest template 'MANIFEST.in'
2021-07-14T17:55:43,468     warning: no files found matching 'uga/*.pyd'
2021-07-14T17:55:43,472     writing manifest file '/tmp/pip-pip-egg-info-ko8_jlxg/uga.egg-info/SOURCES.txt'
2021-07-14T17:55:43,959   Source in /tmp/pip-wheel-0a68paqe/uga_8ecc4416d23e4503861ee3ac8db9813b has version 2.0.1, which satisfies requirement uga==2.0.1 from https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598
2021-07-14T17:55:43,960   Removed uga==2.0.1 from https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598 from build tracker '/tmp/pip-req-tracker-l5mglll4'
2021-07-14T17:55:43,966 Created temporary directory: /tmp/pip-unpack-hdw2l2p0
2021-07-14T17:55:43,966 Building wheels for collected packages: uga
2021-07-14T17:55:43,971   Created temporary directory: /tmp/pip-wheel-9ah7zdnf
2021-07-14T17:55:43,972   Building wheel for uga (setup.py): started
2021-07-14T17:55:43,972   Destination directory: /tmp/pip-wheel-9ah7zdnf
2021-07-14T17:55:43,972   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0a68paqe/uga_8ecc4416d23e4503861ee3ac8db9813b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0a68paqe/uga_8ecc4416d23e4503861ee3ac8db9813b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9ah7zdnf
2021-07-14T17:55:45,936   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T17:55:45,937     warnings.warn(
2021-07-14T17:55:46,122   running bdist_wheel
2021-07-14T17:55:46,127   running build
2021-07-14T17:55:46,128   running build_py
2021-07-14T17:55:46,269   creating build
2021-07-14T17:55:46,270   creating build/lib.linux-armv7l-3.9
2021-07-14T17:55:46,270   creating build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,271   copying uga/Map.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,273   copying uga/__version__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,275   copying uga/Fxns.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,277   copying uga/RunSnvgroupplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,280   copying uga/Parse.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,283   copying uga/RunSnvgroup.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,285   copying uga/RunTools.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,287   copying uga/Args.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,291   copying uga/RunSnv.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,294   copying uga/RunSnvplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,297   copying uga/__main__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,301   copying uga/RunMerge.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,304   copying uga/RunFilter.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,306   copying uga/RunMeta.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,309   copying uga/__init__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,311   copying uga/Definitions.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,313   copying uga/Process.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,314   running egg_info
2021-07-14T17:55:46,328   writing uga.egg-info/PKG-INFO
2021-07-14T17:55:46,330   writing dependency_links to uga.egg-info/dependency_links.txt
2021-07-14T17:55:46,332   writing entry points to uga.egg-info/entry_points.txt
2021-07-14T17:55:46,333   writing requirements to uga.egg-info/requires.txt
2021-07-14T17:55:46,335   writing top-level names to uga.egg-info/top_level.txt
2021-07-14T17:55:46,342   reading manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T17:55:46,344   reading manifest template 'MANIFEST.in'
2021-07-14T17:55:46,347   warning: no files found matching 'uga/*.pyd'
2021-07-14T17:55:46,350   writing manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T17:55:46,353   copying uga/Geno.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,395   copying uga/Geno.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,397   copying uga/Geno.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,400   copying uga/Model.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,491   copying uga/Model.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,498   copying uga/Variant.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,521   copying uga/Variant.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,523   copying uga/Variant.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,526   copying uga/settings.ini -> build/lib.linux-armv7l-3.9/uga
2021-07-14T17:55:46,529   running build_ext
2021-07-14T17:55:46,533   building 'uga.Geno' extension
2021-07-14T17:55:46,534   creating build/temp.linux-armv7l-3.9
2021-07-14T17:55:46,534   creating build/temp.linux-armv7l-3.9/uga
2021-07-14T17:55:46,536   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Geno.c -o build/temp.linux-armv7l-3.9/uga/Geno.o
2021-07-14T17:55:47,007   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T17:55:47,007                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T17:55:47,008                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T17:55:47,008                    from uga/Geno.c:634:
2021-07-14T17:55:47,008   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T17:55:47,008      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T17:55:47,008         |  ^~~~~~~
2021-07-14T17:57:06,923   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Geno.o -o build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so
2021-07-14T17:57:07,251   building 'uga.Model' extension
2021-07-14T17:57:07,252   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Model.c -o build/temp.linux-armv7l-3.9/uga/Model.o
2021-07-14T17:57:07,776   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T17:57:07,776                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T17:57:07,776                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T17:57:07,777                    from uga/Model.c:625:
2021-07-14T17:57:07,777   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T17:57:07,777      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T17:57:07,777         |  ^~~~~~~
2021-07-14T17:57:08,432   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_calc_variant_stats’:
2021-07-14T17:57:08,442   uga/Model.c:13919:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T17:57:08,442   13919 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T17:57:08,442         |                                     ^
2021-07-14T17:57:08,500   uga/Model.c:14611:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T17:57:08,500   14611 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T17:57:08,500         |                                     ^
2021-07-14T17:57:08,546   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_filter’:
2021-07-14T17:57:08,556   uga/Model.c:15394:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare]
2021-07-14T17:57:08,556   15394 |   for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2021-07-14T17:57:08,556         |                                 ^
2021-07-14T18:00:18,162   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Model.o -o build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:00:18,646   building 'uga.Variant' extension
2021-07-14T18:00:18,646   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Variant.c -o build/temp.linux-armv7l-3.9/uga/Variant.o
2021-07-14T18:00:19,088   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:00:19,088                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:00:19,088                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:00:19,088                    from uga/Variant.c:625:
2021-07-14T18:00:19,089   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:00:19,089      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:00:19,089         |  ^~~~~~~
2021-07-14T18:00:31,432   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Variant.o -o build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:00:31,651   installing to build/bdist.linux-armv7l/wheel
2021-07-14T18:00:31,651   running install
2021-07-14T18:00:31,653   running install_lib
2021-07-14T18:00:31,657   creating build/bdist.linux-armv7l
2021-07-14T18:00:31,657   creating build/bdist.linux-armv7l/wheel
2021-07-14T18:00:31,660   creating build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,661   copying build/lib.linux-armv7l-3.9/uga/Geno.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,663   copying build/lib.linux-armv7l-3.9/uga/Map.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,665   copying build/lib.linux-armv7l-3.9/uga/__version__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,667   copying build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,734   copying build/lib.linux-armv7l-3.9/uga/Fxns.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,737   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroupplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,740   copying build/lib.linux-armv7l-3.9/uga/Parse.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,744   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroup.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,747   copying build/lib.linux-armv7l-3.9/uga/Geno.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,796   copying build/lib.linux-armv7l-3.9/uga/RunTools.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,798   copying build/lib.linux-armv7l-3.9/uga/Args.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,802   copying build/lib.linux-armv7l-3.9/uga/Variant.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,804   copying build/lib.linux-armv7l-3.9/uga/RunSnv.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,807   copying build/lib.linux-armv7l-3.9/uga/settings.ini -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,809   copying build/lib.linux-armv7l-3.9/uga/RunSnvplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,812   copying build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,830   copying build/lib.linux-armv7l-3.9/uga/Variant.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,832   copying build/lib.linux-armv7l-3.9/uga/__main__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,835   copying build/lib.linux-armv7l-3.9/uga/RunMerge.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,838   copying build/lib.linux-armv7l-3.9/uga/RunFilter.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,840   copying build/lib.linux-armv7l-3.9/uga/RunMeta.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,843   copying build/lib.linux-armv7l-3.9/uga/__init__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,844   copying build/lib.linux-armv7l-3.9/uga/Model.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,850   copying build/lib.linux-armv7l-3.9/uga/Geno.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,852   copying build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:31,988   copying build/lib.linux-armv7l-3.9/uga/Variant.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:32,007   copying build/lib.linux-armv7l-3.9/uga/Definitions.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:32,009   copying build/lib.linux-armv7l-3.9/uga/Process.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:32,011   copying build/lib.linux-armv7l-3.9/uga/Model.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:00:32,119   running install_egg_info
2021-07-14T18:00:32,131   Copying uga.egg-info to build/bdist.linux-armv7l/wheel/uga-2.0.1-py3.9.egg-info
2021-07-14T18:00:32,156   running install_scripts
2021-07-14T18:00:32,223   creating build/bdist.linux-armv7l/wheel/uga-2.0.1.dist-info/WHEEL
2021-07-14T18:00:32,226   creating '/tmp/pip-wheel-9ah7zdnf/uga-2.0.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T18:00:32,232   adding 'uga/Args.py'
2021-07-14T18:00:32,234   adding 'uga/Definitions.py'
2021-07-14T18:00:32,236   adding 'uga/Fxns.py'
2021-07-14T18:00:32,395   adding 'uga/Geno.c'
2021-07-14T18:00:33,042   adding 'uga/Geno.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:00:33,068   adding 'uga/Geno.pxd'
2021-07-14T18:00:33,070   adding 'uga/Geno.pyx'
2021-07-14T18:00:33,072   adding 'uga/Map.py'
2021-07-14T18:00:33,353   adding 'uga/Model.c'
2021-07-14T18:00:34,612   adding 'uga/Model.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:00:34,670   adding 'uga/Model.pyx'
2021-07-14T18:00:34,674   adding 'uga/Parse.py'
2021-07-14T18:00:34,675   adding 'uga/Process.py'
2021-07-14T18:00:34,677   adding 'uga/RunFilter.py'
2021-07-14T18:00:34,679   adding 'uga/RunMerge.py'
2021-07-14T18:00:34,681   adding 'uga/RunMeta.py'
2021-07-14T18:00:34,683   adding 'uga/RunSnv.py'
2021-07-14T18:00:34,685   adding 'uga/RunSnvgroup.py'
2021-07-14T18:00:34,688   adding 'uga/RunSnvgroupplot.py'
2021-07-14T18:00:34,691   adding 'uga/RunSnvplot.py'
2021-07-14T18:00:34,693   adding 'uga/RunTools.py'
2021-07-14T18:00:34,745   adding 'uga/Variant.c'
2021-07-14T18:00:34,910   adding 'uga/Variant.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:00:34,916   adding 'uga/Variant.pxd'
2021-07-14T18:00:34,918   adding 'uga/Variant.pyx'
2021-07-14T18:00:34,919   adding 'uga/__init__.py'
2021-07-14T18:00:34,922   adding 'uga/__main__.py'
2021-07-14T18:00:34,923   adding 'uga/__version__.py'
2021-07-14T18:00:34,924   adding 'uga/settings.ini'
2021-07-14T18:00:34,927   adding 'uga-2.0.1.dist-info/METADATA'
2021-07-14T18:00:34,928   adding 'uga-2.0.1.dist-info/WHEEL'
2021-07-14T18:00:34,929   adding 'uga-2.0.1.dist-info/entry_points.txt'
2021-07-14T18:00:34,930   adding 'uga-2.0.1.dist-info/top_level.txt'
2021-07-14T18:00:34,931   adding 'uga-2.0.1.dist-info/RECORD'
2021-07-14T18:00:34,991   removing build/bdist.linux-armv7l/wheel
2021-07-14T18:00:35,177   Building wheel for uga (setup.py): finished with status 'done'
2021-07-14T18:00:35,234   Created wheel for uga: filename=uga-2.0.1-cp39-cp39-linux_armv7l.whl size=4351843 sha256=89b29333f3cdcb8d83850465197343059fc01a115bf3844569a14f9908a10c6e
2021-07-14T18:00:35,235   Stored in directory: /tmp/pip-ephem-wheel-cache-q5x1o2rj/wheels/0d/d4/70/a582107eb2b4599b2dc5da7aedca39ecd4c2299d3293bc4bf9
2021-07-14T18:00:35,248 Successfully built uga
2021-07-14T18:00:35,399 Removed build tracker: '/tmp/pip-req-tracker-l5mglll4'