2021-07-14T18:03:19,805 Created temporary directory: /tmp/pip-ephem-wheel-cache-dryxrf29
2021-07-14T18:03:19,808 Created temporary directory: /tmp/pip-req-tracker-srj3wt7y
2021-07-14T18:03:19,809 Initialized build tracking at /tmp/pip-req-tracker-srj3wt7y
2021-07-14T18:03:19,809 Created build tracker: /tmp/pip-req-tracker-srj3wt7y
2021-07-14T18:03:19,809 Entered build tracker: /tmp/pip-req-tracker-srj3wt7y
2021-07-14T18:03:19,810 Created temporary directory: /tmp/pip-wheel-uo0v6dfm
2021-07-14T18:03:19,838 1 location(s) to search for versions of uga:
2021-07-14T18:03:19,838 * https://pypi.org/simple/uga/
2021-07-14T18:03:19,839 Fetching project page and analyzing links: https://pypi.org/simple/uga/
2021-07-14T18:03:19,839 Getting page https://pypi.org/simple/uga/
2021-07-14T18:03:19,841 Found index url https://pypi.org/simple
2021-07-14T18:03:19,931   Found link https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz#sha256=3c47efccfbf3b8d069d31c5644a7e1c2f174d801b25c1cbce312256aa73ef185 (from https://pypi.org/simple/uga/), version: 2.0
2021-07-14T18:03:19,932   Found link https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598 (from https://pypi.org/simple/uga/), version: 2.0.1
2021-07-14T18:03:19,932   Found link https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba (from https://pypi.org/simple/uga/), version: 2.0.2
2021-07-14T18:03:19,933   Found link https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d (from https://pypi.org/simple/uga/), version: 2.0.3
2021-07-14T18:03:19,933   Found link https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581 (from https://pypi.org/simple/uga/), version: 2.0.4
2021-07-14T18:03:19,933   Found link https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e (from https://pypi.org/simple/uga/), version: 2.0.5
2021-07-14T18:03:19,933   Found link https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5 (from https://pypi.org/simple/uga/), version: 2.0.6
2021-07-14T18:03:19,934   Found link https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67 (from https://pypi.org/simple/uga/), version: 2.0.7
2021-07-14T18:03:19,934 Skipping link: not a file: https://pypi.org/simple/uga/
2021-07-14T18:03:19,952 Given no hashes to check 1 links for project 'uga': discarding no candidates
2021-07-14T18:03:19,971 Collecting uga==2.0.2
2021-07-14T18:03:19,972   Created temporary directory: /tmp/pip-unpack-vqernffu
2021-07-14T18:03:20,218   Downloading uga-2.0.2.tar.gz (726 kB)
2021-07-14T18:03:20,656   Added uga==2.0.2 from https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba to build tracker '/tmp/pip-req-tracker-srj3wt7y'
2021-07-14T18:03:20,657     Running setup.py (path:/tmp/pip-wheel-uo0v6dfm/uga_e13bb7e477394953bbf686106a2448a7/setup.py) egg_info for package uga
2021-07-14T18:03:20,658     Created temporary directory: /tmp/pip-pip-egg-info-pe8kpuu8
2021-07-14T18:03:20,658     Running command python setup.py egg_info
2021-07-14T18:03:22,845     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-uo0v6dfm/uga_e13bb7e477394953bbf686106a2448a7/uga/Geno.pxd
2021-07-14T18:03:22,846       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:03:32,199     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-uo0v6dfm/uga_e13bb7e477394953bbf686106a2448a7/uga/Model.pyx
2021-07-14T18:03:32,200       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:03:43,620     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-uo0v6dfm/uga_e13bb7e477394953bbf686106a2448a7/uga/Variant.pxd
2021-07-14T18:03:43,621       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:03:45,930     Compiling uga/Geno.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:03:45,931     Compiling uga/Model.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:03:45,931     Compiling uga/Variant.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:03:45,931     [1/3] Cythonizing uga/Geno.pyx
2021-07-14T18:03:45,931     [2/3] Cythonizing uga/Model.pyx
2021-07-14T18:03:45,931     [3/3] Cythonizing uga/Variant.pyx
2021-07-14T18:03:45,984     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:03:45,984       warnings.warn(
2021-07-14T18:03:46,116     running egg_info
2021-07-14T18:03:46,118     creating /tmp/pip-pip-egg-info-pe8kpuu8/uga.egg-info
2021-07-14T18:03:46,119     writing /tmp/pip-pip-egg-info-pe8kpuu8/uga.egg-info/PKG-INFO
2021-07-14T18:03:46,122     writing dependency_links to /tmp/pip-pip-egg-info-pe8kpuu8/uga.egg-info/dependency_links.txt
2021-07-14T18:03:46,124     writing entry points to /tmp/pip-pip-egg-info-pe8kpuu8/uga.egg-info/entry_points.txt
2021-07-14T18:03:46,125     writing requirements to /tmp/pip-pip-egg-info-pe8kpuu8/uga.egg-info/requires.txt
2021-07-14T18:03:46,126     writing top-level names to /tmp/pip-pip-egg-info-pe8kpuu8/uga.egg-info/top_level.txt
2021-07-14T18:03:46,127     writing manifest file '/tmp/pip-pip-egg-info-pe8kpuu8/uga.egg-info/SOURCES.txt'
2021-07-14T18:03:46,275     reading manifest file '/tmp/pip-pip-egg-info-pe8kpuu8/uga.egg-info/SOURCES.txt'
2021-07-14T18:03:46,277     reading manifest template 'MANIFEST.in'
2021-07-14T18:03:46,279     warning: no files found matching 'uga/*.pyd'
2021-07-14T18:03:46,281     writing manifest file '/tmp/pip-pip-egg-info-pe8kpuu8/uga.egg-info/SOURCES.txt'
2021-07-14T18:03:46,704   Source in /tmp/pip-wheel-uo0v6dfm/uga_e13bb7e477394953bbf686106a2448a7 has version 2.0.2, which satisfies requirement uga==2.0.2 from https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba
2021-07-14T18:03:46,705   Removed uga==2.0.2 from https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba from build tracker '/tmp/pip-req-tracker-srj3wt7y'
2021-07-14T18:03:46,713 Created temporary directory: /tmp/pip-unpack-d1y5g5p8
2021-07-14T18:03:46,714 Building wheels for collected packages: uga
2021-07-14T18:03:46,717   Created temporary directory: /tmp/pip-wheel-bk3m83ie
2021-07-14T18:03:46,718   Building wheel for uga (setup.py): started
2021-07-14T18:03:46,718   Destination directory: /tmp/pip-wheel-bk3m83ie
2021-07-14T18:03:46,718   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-uo0v6dfm/uga_e13bb7e477394953bbf686106a2448a7/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-uo0v6dfm/uga_e13bb7e477394953bbf686106a2448a7/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bk3m83ie
2021-07-14T18:03:48,754   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:03:48,754     warnings.warn(
2021-07-14T18:03:48,918   running bdist_wheel
2021-07-14T18:03:48,925   running build
2021-07-14T18:03:48,925   running build_py
2021-07-14T18:03:49,059   creating build
2021-07-14T18:03:49,059   creating build/lib.linux-armv7l-3.9
2021-07-14T18:03:49,060   creating build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,061   copying uga/RunSnvgroupplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,064   copying uga/Args.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,067   copying uga/__version__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,068   copying uga/Parse.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,071   copying uga/RunMerge.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,073   copying uga/__main__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,076   copying uga/Fxns.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,078   copying uga/Map.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,080   copying uga/RunSnv.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,082   copying uga/RunFilter.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,084   copying uga/Definitions.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,086   copying uga/RunMeta.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,088   copying uga/Process.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,090   copying uga/__init__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,092   copying uga/RunTools.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,094   copying uga/RunSnvgroup.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,097   copying uga/RunSnvplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,100   running egg_info
2021-07-14T18:03:49,116   writing uga.egg-info/PKG-INFO
2021-07-14T18:03:49,118   writing dependency_links to uga.egg-info/dependency_links.txt
2021-07-14T18:03:49,120   writing entry points to uga.egg-info/entry_points.txt
2021-07-14T18:03:49,121   writing requirements to uga.egg-info/requires.txt
2021-07-14T18:03:49,122   writing top-level names to uga.egg-info/top_level.txt
2021-07-14T18:03:49,129   reading manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:03:49,132   reading manifest template 'MANIFEST.in'
2021-07-14T18:03:49,134   warning: no files found matching 'uga/*.pyd'
2021-07-14T18:03:49,137   writing manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:03:49,141   copying uga/Geno.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,182   copying uga/Geno.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,184   copying uga/Geno.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,186   copying uga/Model.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,291   copying uga/Model.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,296   copying uga/Variant.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,314   copying uga/Variant.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,316   copying uga/Variant.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:03:49,320   running build_ext
2021-07-14T18:03:49,325   building 'uga.Geno' extension
2021-07-14T18:03:49,326   creating build/temp.linux-armv7l-3.9
2021-07-14T18:03:49,327   creating build/temp.linux-armv7l-3.9/uga
2021-07-14T18:03:49,328   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Geno.c -o build/temp.linux-armv7l-3.9/uga/Geno.o
2021-07-14T18:03:49,739   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:03:49,740                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:03:49,740                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:03:49,740                    from uga/Geno.c:634:
2021-07-14T18:03:49,740   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:03:49,740      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:03:49,740         |  ^~~~~~~
2021-07-14T18:04:56,128   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Geno.o -o build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:04:56,416   building 'uga.Model' extension
2021-07-14T18:04:56,416   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Model.c -o build/temp.linux-armv7l-3.9/uga/Model.o
2021-07-14T18:04:56,833   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:04:56,834                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:04:56,834                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:04:56,834                    from uga/Model.c:625:
2021-07-14T18:04:56,834   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:04:56,834      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:04:56,834         |  ^~~~~~~
2021-07-14T18:04:57,293   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_calc_variant_stats’:
2021-07-14T18:04:57,301   uga/Model.c:13919:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:04:57,302   13919 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:04:57,302         |                                     ^
2021-07-14T18:04:57,343   uga/Model.c:14611:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:04:57,343   14611 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:04:57,343         |                                     ^
2021-07-14T18:04:57,379   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_filter’:
2021-07-14T18:04:57,388   uga/Model.c:15394:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare]
2021-07-14T18:04:57,388   15394 |   for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2021-07-14T18:04:57,388         |                                 ^
2021-07-14T18:07:29,311   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Model.o -o build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:07:29,777   building 'uga.Variant' extension
2021-07-14T18:07:29,778   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Variant.c -o build/temp.linux-armv7l-3.9/uga/Variant.o
2021-07-14T18:07:30,185   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:07:30,186                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:07:30,186                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:07:30,186                    from uga/Variant.c:625:
2021-07-14T18:07:30,186   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:07:30,186      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:07:30,187         |  ^~~~~~~
2021-07-14T18:07:41,318   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Variant.o -o build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:07:41,476   installing to build/bdist.linux-armv7l/wheel
2021-07-14T18:07:41,477   running install
2021-07-14T18:07:41,479   running install_lib
2021-07-14T18:07:41,484   creating build/bdist.linux-armv7l
2021-07-14T18:07:41,485   creating build/bdist.linux-armv7l/wheel
2021-07-14T18:07:41,487   creating build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,489   copying build/lib.linux-armv7l-3.9/uga/Model.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,568   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroupplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,571   copying build/lib.linux-armv7l-3.9/uga/Args.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,574   copying build/lib.linux-armv7l-3.9/uga/__version__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,576   copying build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,644   copying build/lib.linux-armv7l-3.9/uga/Parse.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,647   copying build/lib.linux-armv7l-3.9/uga/RunMerge.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,649   copying build/lib.linux-armv7l-3.9/uga/Variant.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,650   copying build/lib.linux-armv7l-3.9/uga/Geno.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,653   copying build/lib.linux-armv7l-3.9/uga/__main__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,656   copying build/lib.linux-armv7l-3.9/uga/Variant.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,674   copying build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,692   copying build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,825   copying build/lib.linux-armv7l-3.9/uga/Fxns.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,827   copying build/lib.linux-armv7l-3.9/uga/Map.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,829   copying build/lib.linux-armv7l-3.9/uga/RunSnv.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,831   copying build/lib.linux-armv7l-3.9/uga/Geno.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,877   copying build/lib.linux-armv7l-3.9/uga/RunFilter.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,879   copying build/lib.linux-armv7l-3.9/uga/Definitions.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,881   copying build/lib.linux-armv7l-3.9/uga/RunMeta.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,884   copying build/lib.linux-armv7l-3.9/uga/Variant.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,886   copying build/lib.linux-armv7l-3.9/uga/Geno.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,888   copying build/lib.linux-armv7l-3.9/uga/Model.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,893   copying build/lib.linux-armv7l-3.9/uga/Process.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,895   copying build/lib.linux-armv7l-3.9/uga/__init__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,896   copying build/lib.linux-armv7l-3.9/uga/RunTools.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,899   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroup.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,902   copying build/lib.linux-armv7l-3.9/uga/RunSnvplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:07:41,905   running install_egg_info
2021-07-14T18:07:41,917   Copying uga.egg-info to build/bdist.linux-armv7l/wheel/uga-2.0.2-py3.9.egg-info
2021-07-14T18:07:41,933   running install_scripts
2021-07-14T18:07:41,992   creating build/bdist.linux-armv7l/wheel/uga-2.0.2.dist-info/WHEEL
2021-07-14T18:07:41,995   creating '/tmp/pip-wheel-bk3m83ie/uga-2.0.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T18:07:42,001   adding 'uga/Args.py'
2021-07-14T18:07:42,003   adding 'uga/Definitions.py'
2021-07-14T18:07:42,005   adding 'uga/Fxns.py'
2021-07-14T18:07:42,154   adding 'uga/Geno.c'
2021-07-14T18:07:42,755   adding 'uga/Geno.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:07:42,784   adding 'uga/Geno.pxd'
2021-07-14T18:07:42,787   adding 'uga/Geno.pyx'
2021-07-14T18:07:42,788   adding 'uga/Map.py'
2021-07-14T18:07:43,058   adding 'uga/Model.c'
2021-07-14T18:07:44,243   adding 'uga/Model.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:07:44,302   adding 'uga/Model.pyx'
2021-07-14T18:07:44,305   adding 'uga/Parse.py'
2021-07-14T18:07:44,307   adding 'uga/Process.py'
2021-07-14T18:07:44,309   adding 'uga/RunFilter.py'
2021-07-14T18:07:44,311   adding 'uga/RunMerge.py'
2021-07-14T18:07:44,313   adding 'uga/RunMeta.py'
2021-07-14T18:07:44,315   adding 'uga/RunSnv.py'
2021-07-14T18:07:44,318   adding 'uga/RunSnvgroup.py'
2021-07-14T18:07:44,321   adding 'uga/RunSnvgroupplot.py'
2021-07-14T18:07:44,324   adding 'uga/RunSnvplot.py'
2021-07-14T18:07:44,326   adding 'uga/RunTools.py'
2021-07-14T18:07:44,375   adding 'uga/Variant.c'
2021-07-14T18:07:44,528   adding 'uga/Variant.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:07:44,536   adding 'uga/Variant.pxd'
2021-07-14T18:07:44,537   adding 'uga/Variant.pyx'
2021-07-14T18:07:44,539   adding 'uga/__init__.py'
2021-07-14T18:07:44,542   adding 'uga/__main__.py'
2021-07-14T18:07:44,543   adding 'uga/__version__.py'
2021-07-14T18:07:44,546   adding 'uga-2.0.2.dist-info/METADATA'
2021-07-14T18:07:44,547   adding 'uga-2.0.2.dist-info/WHEEL'
2021-07-14T18:07:44,548   adding 'uga-2.0.2.dist-info/entry_points.txt'
2021-07-14T18:07:44,549   adding 'uga-2.0.2.dist-info/top_level.txt'
2021-07-14T18:07:44,551   adding 'uga-2.0.2.dist-info/RECORD'
2021-07-14T18:07:44,617   removing build/bdist.linux-armv7l/wheel
2021-07-14T18:07:44,780   Building wheel for uga (setup.py): finished with status 'done'
2021-07-14T18:07:44,836   Created wheel for uga: filename=uga-2.0.2-cp39-cp39-linux_armv7l.whl size=4351440 sha256=81c811d08f5395585ef4afb30b07f59f6696b27e91c2e7dfd250659b78e2b1fb
2021-07-14T18:07:44,836   Stored in directory: /tmp/pip-ephem-wheel-cache-dryxrf29/wheels/1b/03/1c/adb5a20d9de22f17f9b43476f02036066dbc9d68be5ccd90e1
2021-07-14T18:07:44,848 Successfully built uga
2021-07-14T18:07:45,007 Removed build tracker: '/tmp/pip-req-tracker-srj3wt7y'