2021-07-14T18:05:03,543 Created temporary directory: /tmp/pip-ephem-wheel-cache-hpdu13q3
2021-07-14T18:05:03,546 Created temporary directory: /tmp/pip-req-tracker-xgvopoez
2021-07-14T18:05:03,547 Initialized build tracking at /tmp/pip-req-tracker-xgvopoez
2021-07-14T18:05:03,547 Created build tracker: /tmp/pip-req-tracker-xgvopoez
2021-07-14T18:05:03,547 Entered build tracker: /tmp/pip-req-tracker-xgvopoez
2021-07-14T18:05:03,548 Created temporary directory: /tmp/pip-wheel-qg1q_8l5
2021-07-14T18:05:03,578 1 location(s) to search for versions of uga:
2021-07-14T18:05:03,578 * https://pypi.org/simple/uga/
2021-07-14T18:05:03,578 Fetching project page and analyzing links: https://pypi.org/simple/uga/
2021-07-14T18:05:03,579 Getting page https://pypi.org/simple/uga/
2021-07-14T18:05:03,580 Found index url https://pypi.org/simple
2021-07-14T18:05:03,671   Found link https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz#sha256=3c47efccfbf3b8d069d31c5644a7e1c2f174d801b25c1cbce312256aa73ef185 (from https://pypi.org/simple/uga/), version: 2.0
2021-07-14T18:05:03,671   Found link https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598 (from https://pypi.org/simple/uga/), version: 2.0.1
2021-07-14T18:05:03,671   Found link https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba (from https://pypi.org/simple/uga/), version: 2.0.2
2021-07-14T18:05:03,672   Found link https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d (from https://pypi.org/simple/uga/), version: 2.0.3
2021-07-14T18:05:03,672   Found link https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581 (from https://pypi.org/simple/uga/), version: 2.0.4
2021-07-14T18:05:03,672   Found link https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e (from https://pypi.org/simple/uga/), version: 2.0.5
2021-07-14T18:05:03,673   Found link https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5 (from https://pypi.org/simple/uga/), version: 2.0.6
2021-07-14T18:05:03,673   Found link https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67 (from https://pypi.org/simple/uga/), version: 2.0.7
2021-07-14T18:05:03,673 Skipping link: not a file: https://pypi.org/simple/uga/
2021-07-14T18:05:03,695 Given no hashes to check 1 links for project 'uga': discarding no candidates
2021-07-14T18:05:03,714 Collecting uga==2.0.3
2021-07-14T18:05:03,716   Created temporary directory: /tmp/pip-unpack-hzb23j4u
2021-07-14T18:05:04,301   Downloading uga-2.0.3.tar.gz (727 kB)
2021-07-14T18:05:04,750   Added uga==2.0.3 from https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d to build tracker '/tmp/pip-req-tracker-xgvopoez'
2021-07-14T18:05:04,751     Running setup.py (path:/tmp/pip-wheel-qg1q_8l5/uga_7ad3d7e0dfb6469ea66265408b15cdf2/setup.py) egg_info for package uga
2021-07-14T18:05:04,752     Created temporary directory: /tmp/pip-pip-egg-info-40fhy_7x
2021-07-14T18:05:04,752     Running command python setup.py egg_info
2021-07-14T18:05:07,040     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-qg1q_8l5/uga_7ad3d7e0dfb6469ea66265408b15cdf2/uga/Geno.pxd
2021-07-14T18:05:07,041       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:05:16,423     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-qg1q_8l5/uga_7ad3d7e0dfb6469ea66265408b15cdf2/uga/Model.pyx
2021-07-14T18:05:16,423       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:05:27,773     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-qg1q_8l5/uga_7ad3d7e0dfb6469ea66265408b15cdf2/uga/Variant.pxd
2021-07-14T18:05:27,774       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:05:30,075     Compiling uga/Geno.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:05:30,076     Compiling uga/Model.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:05:30,076     Compiling uga/Variant.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:05:30,076     [1/3] Cythonizing uga/Geno.pyx
2021-07-14T18:05:30,076     [2/3] Cythonizing uga/Model.pyx
2021-07-14T18:05:30,076     [3/3] Cythonizing uga/Variant.pyx
2021-07-14T18:05:30,140     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:05:30,140       warnings.warn(
2021-07-14T18:05:30,297     running egg_info
2021-07-14T18:05:30,299     creating /tmp/pip-pip-egg-info-40fhy_7x/uga.egg-info
2021-07-14T18:05:30,301     writing /tmp/pip-pip-egg-info-40fhy_7x/uga.egg-info/PKG-INFO
2021-07-14T18:05:30,304     writing dependency_links to /tmp/pip-pip-egg-info-40fhy_7x/uga.egg-info/dependency_links.txt
2021-07-14T18:05:30,306     writing entry points to /tmp/pip-pip-egg-info-40fhy_7x/uga.egg-info/entry_points.txt
2021-07-14T18:05:30,307     writing requirements to /tmp/pip-pip-egg-info-40fhy_7x/uga.egg-info/requires.txt
2021-07-14T18:05:30,308     writing top-level names to /tmp/pip-pip-egg-info-40fhy_7x/uga.egg-info/top_level.txt
2021-07-14T18:05:30,310     writing manifest file '/tmp/pip-pip-egg-info-40fhy_7x/uga.egg-info/SOURCES.txt'
2021-07-14T18:05:30,505     reading manifest file '/tmp/pip-pip-egg-info-40fhy_7x/uga.egg-info/SOURCES.txt'
2021-07-14T18:05:30,507     reading manifest template 'MANIFEST.in'
2021-07-14T18:05:30,511     warning: no files found matching 'uga/*.pyd'
2021-07-14T18:05:30,515     writing manifest file '/tmp/pip-pip-egg-info-40fhy_7x/uga.egg-info/SOURCES.txt'
2021-07-14T18:05:30,978   Source in /tmp/pip-wheel-qg1q_8l5/uga_7ad3d7e0dfb6469ea66265408b15cdf2 has version 2.0.3, which satisfies requirement uga==2.0.3 from https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d
2021-07-14T18:05:30,979   Removed uga==2.0.3 from https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d from build tracker '/tmp/pip-req-tracker-xgvopoez'
2021-07-14T18:05:30,984 Created temporary directory: /tmp/pip-unpack-ma_un6bi
2021-07-14T18:05:30,984 Building wheels for collected packages: uga
2021-07-14T18:05:30,989   Created temporary directory: /tmp/pip-wheel-_t047jcx
2021-07-14T18:05:30,990   Building wheel for uga (setup.py): started
2021-07-14T18:05:30,990   Destination directory: /tmp/pip-wheel-_t047jcx
2021-07-14T18:05:30,990   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-qg1q_8l5/uga_7ad3d7e0dfb6469ea66265408b15cdf2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-qg1q_8l5/uga_7ad3d7e0dfb6469ea66265408b15cdf2/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_t047jcx
2021-07-14T18:05:33,186   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:05:33,187     warnings.warn(
2021-07-14T18:05:33,345   running bdist_wheel
2021-07-14T18:05:33,351   running build
2021-07-14T18:05:33,351   running build_py
2021-07-14T18:05:33,489   creating build
2021-07-14T18:05:33,490   creating build/lib.linux-armv7l-3.9
2021-07-14T18:05:33,490   creating build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,491   copying uga/RunSnv.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,494   copying uga/__version__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,495   copying uga/Parse.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,498   copying uga/RunTools.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,500   copying uga/Definitions.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,502   copying uga/Qsub.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,504   copying uga/RunMeta.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,506   copying uga/__init__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,508   copying uga/RunSnvgroup.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,510   copying uga/Process.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,512   copying uga/RunSnvplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,515   copying uga/__main__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,518   copying uga/Args.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,521   copying uga/RunMerge.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,524   copying uga/RunFilter.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,526   copying uga/Map.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,528   copying uga/Fxns.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,530   copying uga/RunSnvgroupplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,533   running egg_info
2021-07-14T18:05:33,548   writing uga.egg-info/PKG-INFO
2021-07-14T18:05:33,550   writing dependency_links to uga.egg-info/dependency_links.txt
2021-07-14T18:05:33,552   writing entry points to uga.egg-info/entry_points.txt
2021-07-14T18:05:33,553   writing requirements to uga.egg-info/requires.txt
2021-07-14T18:05:33,554   writing top-level names to uga.egg-info/top_level.txt
2021-07-14T18:05:33,600   reading manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:05:33,603   reading manifest template 'MANIFEST.in'
2021-07-14T18:05:33,606   warning: no files found matching 'uga/*.pyd'
2021-07-14T18:05:33,610   writing manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:05:33,613   copying uga/Geno.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,670   copying uga/Geno.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,672   copying uga/Geno.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,675   copying uga/Model.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,768   copying uga/Model.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,773   copying uga/Variant.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,793   copying uga/Variant.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,796   copying uga/Variant.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:05:33,800   running build_ext
2021-07-14T18:05:33,806   building 'uga.Geno' extension
2021-07-14T18:05:33,807   creating build/temp.linux-armv7l-3.9
2021-07-14T18:05:33,808   creating build/temp.linux-armv7l-3.9/uga
2021-07-14T18:05:33,808   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Geno.c -o build/temp.linux-armv7l-3.9/uga/Geno.o
2021-07-14T18:05:34,217   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:05:34,217                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:05:34,217                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:05:34,217                    from uga/Geno.c:634:
2021-07-14T18:05:34,217   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:05:34,218      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:05:34,218         |  ^~~~~~~
2021-07-14T18:06:39,825   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Geno.o -o build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:06:40,139   building 'uga.Model' extension
2021-07-14T18:06:40,140   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Model.c -o build/temp.linux-armv7l-3.9/uga/Model.o
2021-07-14T18:06:40,569   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:06:40,569                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:06:40,569                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:06:40,569                    from uga/Model.c:625:
2021-07-14T18:06:40,569   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:06:40,569      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:06:40,570         |  ^~~~~~~
2021-07-14T18:06:41,029   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_calc_variant_stats’:
2021-07-14T18:06:41,037   uga/Model.c:13919:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:06:41,038   13919 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:06:41,038         |                                     ^
2021-07-14T18:06:41,079   uga/Model.c:14611:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:06:41,079   14611 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:06:41,079         |                                     ^
2021-07-14T18:06:41,116   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_filter’:
2021-07-14T18:06:41,125   uga/Model.c:15394:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare]
2021-07-14T18:06:41,126   15394 |   for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2021-07-14T18:06:41,126         |                                 ^
2021-07-14T18:09:12,810   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Model.o -o build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:09:13,265   building 'uga.Variant' extension
2021-07-14T18:09:13,265   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Variant.c -o build/temp.linux-armv7l-3.9/uga/Variant.o
2021-07-14T18:09:13,680   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:09:13,680                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:09:13,680                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:09:13,681                    from uga/Variant.c:625:
2021-07-14T18:09:13,681   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:09:13,681      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:09:13,681         |  ^~~~~~~
2021-07-14T18:09:24,856   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Variant.o -o build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:09:25,016   installing to build/bdist.linux-armv7l/wheel
2021-07-14T18:09:25,016   running install
2021-07-14T18:09:25,018   running install_lib
2021-07-14T18:09:25,022   creating build/bdist.linux-armv7l
2021-07-14T18:09:25,022   creating build/bdist.linux-armv7l/wheel
2021-07-14T18:09:25,024   creating build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,025   copying build/lib.linux-armv7l-3.9/uga/RunSnv.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,028   copying build/lib.linux-armv7l-3.9/uga/Variant.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,030   copying build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,096   copying build/lib.linux-armv7l-3.9/uga/Variant.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,098   copying build/lib.linux-armv7l-3.9/uga/Geno.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,100   copying build/lib.linux-armv7l-3.9/uga/__version__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,102   copying build/lib.linux-armv7l-3.9/uga/Parse.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,104   copying build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,122   copying build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,239   copying build/lib.linux-armv7l-3.9/uga/RunTools.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,242   copying build/lib.linux-armv7l-3.9/uga/Definitions.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,243   copying build/lib.linux-armv7l-3.9/uga/Model.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,247   copying build/lib.linux-armv7l-3.9/uga/Qsub.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,249   copying build/lib.linux-armv7l-3.9/uga/RunMeta.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,251   copying build/lib.linux-armv7l-3.9/uga/Model.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,334   copying build/lib.linux-armv7l-3.9/uga/__init__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,335   copying build/lib.linux-armv7l-3.9/uga/Variant.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,351   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroup.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,354   copying build/lib.linux-armv7l-3.9/uga/Process.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,355   copying build/lib.linux-armv7l-3.9/uga/Geno.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,400   copying build/lib.linux-armv7l-3.9/uga/RunSnvplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,403   copying build/lib.linux-armv7l-3.9/uga/__main__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,405   copying build/lib.linux-armv7l-3.9/uga/Geno.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,407   copying build/lib.linux-armv7l-3.9/uga/Args.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,411   copying build/lib.linux-armv7l-3.9/uga/RunMerge.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,413   copying build/lib.linux-armv7l-3.9/uga/RunFilter.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,415   copying build/lib.linux-armv7l-3.9/uga/Map.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,417   copying build/lib.linux-armv7l-3.9/uga/Fxns.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,419   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroupplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:09:25,422   running install_egg_info
2021-07-14T18:09:25,427   Copying uga.egg-info to build/bdist.linux-armv7l/wheel/uga-2.0.3-py3.9.egg-info
2021-07-14T18:09:25,444   running install_scripts
2021-07-14T18:09:25,501   creating build/bdist.linux-armv7l/wheel/uga-2.0.3.dist-info/WHEEL
2021-07-14T18:09:25,505   creating '/tmp/pip-wheel-_t047jcx/uga-2.0.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T18:09:25,511   adding 'uga/Args.py'
2021-07-14T18:09:25,512   adding 'uga/Definitions.py'
2021-07-14T18:09:25,514   adding 'uga/Fxns.py'
2021-07-14T18:09:25,664   adding 'uga/Geno.c'
2021-07-14T18:09:26,266   adding 'uga/Geno.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:09:26,292   adding 'uga/Geno.pxd'
2021-07-14T18:09:26,295   adding 'uga/Geno.pyx'
2021-07-14T18:09:26,296   adding 'uga/Map.py'
2021-07-14T18:09:26,562   adding 'uga/Model.c'
2021-07-14T18:09:27,757   adding 'uga/Model.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:09:27,816   adding 'uga/Model.pyx'
2021-07-14T18:09:27,819   adding 'uga/Parse.py'
2021-07-14T18:09:27,820   adding 'uga/Process.py'
2021-07-14T18:09:27,822   adding 'uga/Qsub.py'
2021-07-14T18:09:27,823   adding 'uga/RunFilter.py'
2021-07-14T18:09:27,825   adding 'uga/RunMerge.py'
2021-07-14T18:09:27,827   adding 'uga/RunMeta.py'
2021-07-14T18:09:27,829   adding 'uga/RunSnv.py'
2021-07-14T18:09:27,831   adding 'uga/RunSnvgroup.py'
2021-07-14T18:09:27,833   adding 'uga/RunSnvgroupplot.py'
2021-07-14T18:09:27,836   adding 'uga/RunSnvplot.py'
2021-07-14T18:09:27,838   adding 'uga/RunTools.py'
2021-07-14T18:09:27,886   adding 'uga/Variant.c'
2021-07-14T18:09:28,044   adding 'uga/Variant.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:09:28,051   adding 'uga/Variant.pxd'
2021-07-14T18:09:28,052   adding 'uga/Variant.pyx'
2021-07-14T18:09:28,053   adding 'uga/__init__.py'
2021-07-14T18:09:28,055   adding 'uga/__main__.py'
2021-07-14T18:09:28,057   adding 'uga/__version__.py'
2021-07-14T18:09:28,059   adding 'uga-2.0.3.dist-info/METADATA'
2021-07-14T18:09:28,060   adding 'uga-2.0.3.dist-info/WHEEL'
2021-07-14T18:09:28,061   adding 'uga-2.0.3.dist-info/entry_points.txt'
2021-07-14T18:09:28,062   adding 'uga-2.0.3.dist-info/top_level.txt'
2021-07-14T18:09:28,063   adding 'uga-2.0.3.dist-info/RECORD'
2021-07-14T18:09:28,129   removing build/bdist.linux-armv7l/wheel
2021-07-14T18:09:28,301   Building wheel for uga (setup.py): finished with status 'done'
2021-07-14T18:09:28,364   Created wheel for uga: filename=uga-2.0.3-cp39-cp39-linux_armv7l.whl size=4352770 sha256=19595ba8c837169226774abafcd5d1796cfd63893d5df5993f6f02631cf3f9e8
2021-07-14T18:09:28,364   Stored in directory: /tmp/pip-ephem-wheel-cache-hpdu13q3/wheels/88/8b/46/9edf9b065331dac28e133cb4feb3943c7d730a6fdba67cf1aa
2021-07-14T18:09:28,377 Successfully built uga
2021-07-14T18:09:28,518 Removed build tracker: '/tmp/pip-req-tracker-xgvopoez'