2021-07-14T18:11:56,171 Created temporary directory: /tmp/pip-ephem-wheel-cache-tfp2uvzk
2021-07-14T18:11:56,174 Created temporary directory: /tmp/pip-req-tracker-v_c0zyta
2021-07-14T18:11:56,175 Initialized build tracking at /tmp/pip-req-tracker-v_c0zyta
2021-07-14T18:11:56,175 Created build tracker: /tmp/pip-req-tracker-v_c0zyta
2021-07-14T18:11:56,175 Entered build tracker: /tmp/pip-req-tracker-v_c0zyta
2021-07-14T18:11:56,175 Created temporary directory: /tmp/pip-wheel-ee3fojcq
2021-07-14T18:11:56,202 1 location(s) to search for versions of uga:
2021-07-14T18:11:56,202 * https://pypi.org/simple/uga/
2021-07-14T18:11:56,202 Fetching project page and analyzing links: https://pypi.org/simple/uga/
2021-07-14T18:11:56,203 Getting page https://pypi.org/simple/uga/
2021-07-14T18:11:56,204 Found index url https://pypi.org/simple
2021-07-14T18:11:56,296   Found link https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz#sha256=3c47efccfbf3b8d069d31c5644a7e1c2f174d801b25c1cbce312256aa73ef185 (from https://pypi.org/simple/uga/), version: 2.0
2021-07-14T18:11:56,297   Found link https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598 (from https://pypi.org/simple/uga/), version: 2.0.1
2021-07-14T18:11:56,297   Found link https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba (from https://pypi.org/simple/uga/), version: 2.0.2
2021-07-14T18:11:56,297   Found link https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d (from https://pypi.org/simple/uga/), version: 2.0.3
2021-07-14T18:11:56,297   Found link https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581 (from https://pypi.org/simple/uga/), version: 2.0.4
2021-07-14T18:11:56,298   Found link https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e (from https://pypi.org/simple/uga/), version: 2.0.5
2021-07-14T18:11:56,298   Found link https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5 (from https://pypi.org/simple/uga/), version: 2.0.6
2021-07-14T18:11:56,298   Found link https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67 (from https://pypi.org/simple/uga/), version: 2.0.7
2021-07-14T18:11:56,299 Skipping link: not a file: https://pypi.org/simple/uga/
2021-07-14T18:11:56,320 Given no hashes to check 1 links for project 'uga': discarding no candidates
2021-07-14T18:11:56,354 Collecting uga==2.0.6
2021-07-14T18:11:56,356   Created temporary directory: /tmp/pip-unpack-nndbnes8
2021-07-14T18:11:56,743   Downloading uga-2.0.6.tar.gz (728 kB)
2021-07-14T18:11:57,171   Added uga==2.0.6 from https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5 to build tracker '/tmp/pip-req-tracker-v_c0zyta'
2021-07-14T18:11:57,173     Running setup.py (path:/tmp/pip-wheel-ee3fojcq/uga_08153405fe1f435a956e56563ce15bda/setup.py) egg_info for package uga
2021-07-14T18:11:57,173     Created temporary directory: /tmp/pip-pip-egg-info-wj6k_9mk
2021-07-14T18:11:57,174     Running command python setup.py egg_info
2021-07-14T18:11:59,650     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ee3fojcq/uga_08153405fe1f435a956e56563ce15bda/uga/Geno.pxd
2021-07-14T18:11:59,650       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:12:09,025     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ee3fojcq/uga_08153405fe1f435a956e56563ce15bda/uga/Model.pyx
2021-07-14T18:12:09,025       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:12:20,336     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ee3fojcq/uga_08153405fe1f435a956e56563ce15bda/uga/Variant.pxd
2021-07-14T18:12:20,337       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:12:22,626     Compiling uga/Geno.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:12:22,626     Compiling uga/Model.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:12:22,626     Compiling uga/Variant.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:12:22,627     [1/3] Cythonizing uga/Geno.pyx
2021-07-14T18:12:22,627     [2/3] Cythonizing uga/Model.pyx
2021-07-14T18:12:22,627     [3/3] Cythonizing uga/Variant.pyx
2021-07-14T18:12:22,694     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:12:22,694       warnings.warn(
2021-07-14T18:12:22,854     running egg_info
2021-07-14T18:12:22,856     creating /tmp/pip-pip-egg-info-wj6k_9mk/uga.egg-info
2021-07-14T18:12:22,858     writing /tmp/pip-pip-egg-info-wj6k_9mk/uga.egg-info/PKG-INFO
2021-07-14T18:12:22,861     writing dependency_links to /tmp/pip-pip-egg-info-wj6k_9mk/uga.egg-info/dependency_links.txt
2021-07-14T18:12:22,863     writing entry points to /tmp/pip-pip-egg-info-wj6k_9mk/uga.egg-info/entry_points.txt
2021-07-14T18:12:22,865     writing requirements to /tmp/pip-pip-egg-info-wj6k_9mk/uga.egg-info/requires.txt
2021-07-14T18:12:22,866     writing top-level names to /tmp/pip-pip-egg-info-wj6k_9mk/uga.egg-info/top_level.txt
2021-07-14T18:12:22,868     writing manifest file '/tmp/pip-pip-egg-info-wj6k_9mk/uga.egg-info/SOURCES.txt'
2021-07-14T18:12:23,067     reading manifest file '/tmp/pip-pip-egg-info-wj6k_9mk/uga.egg-info/SOURCES.txt'
2021-07-14T18:12:23,070     reading manifest template 'MANIFEST.in'
2021-07-14T18:12:23,074     warning: no files found matching 'uga/*.pyd'
2021-07-14T18:12:23,079     writing manifest file '/tmp/pip-pip-egg-info-wj6k_9mk/uga.egg-info/SOURCES.txt'
2021-07-14T18:12:23,539   Source in /tmp/pip-wheel-ee3fojcq/uga_08153405fe1f435a956e56563ce15bda has version 2.0.6, which satisfies requirement uga==2.0.6 from https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5
2021-07-14T18:12:23,540   Removed uga==2.0.6 from https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5 from build tracker '/tmp/pip-req-tracker-v_c0zyta'
2021-07-14T18:12:23,545 Created temporary directory: /tmp/pip-unpack-rngyxand
2021-07-14T18:12:23,545 Building wheels for collected packages: uga
2021-07-14T18:12:23,549   Created temporary directory: /tmp/pip-wheel-c1wkqa03
2021-07-14T18:12:23,549   Building wheel for uga (setup.py): started
2021-07-14T18:12:23,550   Destination directory: /tmp/pip-wheel-c1wkqa03
2021-07-14T18:12:23,550   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ee3fojcq/uga_08153405fe1f435a956e56563ce15bda/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ee3fojcq/uga_08153405fe1f435a956e56563ce15bda/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-c1wkqa03
2021-07-14T18:12:25,706   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:12:25,706     warnings.warn(
2021-07-14T18:12:25,866   running bdist_wheel
2021-07-14T18:12:25,872   running build
2021-07-14T18:12:25,873   running build_py
2021-07-14T18:12:26,015   creating build
2021-07-14T18:12:26,015   creating build/lib.linux-armv7l-3.9
2021-07-14T18:12:26,016   creating build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,017   copying uga/RunSnv.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,020   copying uga/__version__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,021   copying uga/Parse.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,024   copying uga/RunTools.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,026   copying uga/Definitions.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,028   copying uga/Qsub.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,030   copying uga/RunMeta.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,032   copying uga/__init__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,034   copying uga/RunSnvgroup.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,036   copying uga/Process.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,038   copying uga/RunSnvplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,041   copying uga/__main__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,044   copying uga/Args.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,048   copying uga/RunMerge.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,050   copying uga/RunFilter.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,053   copying uga/Map.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,055   copying uga/Fxns.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,058   copying uga/RunSnvgroupplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,061   running egg_info
2021-07-14T18:12:26,075   writing uga.egg-info/PKG-INFO
2021-07-14T18:12:26,078   writing dependency_links to uga.egg-info/dependency_links.txt
2021-07-14T18:12:26,080   writing entry points to uga.egg-info/entry_points.txt
2021-07-14T18:12:26,081   writing requirements to uga.egg-info/requires.txt
2021-07-14T18:12:26,082   writing top-level names to uga.egg-info/top_level.txt
2021-07-14T18:12:26,127   reading manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:12:26,131   reading manifest template 'MANIFEST.in'
2021-07-14T18:12:26,134   warning: no files found matching 'uga/*.pyd'
2021-07-14T18:12:26,137   writing manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:12:26,140   copying uga/Geno.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,190   copying uga/Geno.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,193   copying uga/Geno.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,196   copying uga/Model.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,316   copying uga/Model.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,321   copying uga/Variant.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,341   copying uga/Variant.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,343   copying uga/Variant.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,347   running build_ext
2021-07-14T18:12:26,352   building 'uga.Geno' extension
2021-07-14T18:12:26,353   creating build/temp.linux-armv7l-3.9
2021-07-14T18:12:26,353   creating build/temp.linux-armv7l-3.9/uga
2021-07-14T18:12:26,354   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Geno.c -o build/temp.linux-armv7l-3.9/uga/Geno.o
2021-07-14T18:12:26,767   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:12:26,767                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:12:26,767                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:12:26,768                    from uga/Geno.c:634:
2021-07-14T18:12:26,768   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:12:26,768      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:12:26,768         |  ^~~~~~~
2021-07-14T18:13:32,474   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Geno.o -o build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:13:32,762   building 'uga.Model' extension
2021-07-14T18:13:32,763   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Model.c -o build/temp.linux-armv7l-3.9/uga/Model.o
2021-07-14T18:13:33,181   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:13:33,181                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:13:33,182                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:13:33,182                    from uga/Model.c:625:
2021-07-14T18:13:33,182   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:13:33,182      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:13:33,182         |  ^~~~~~~
2021-07-14T18:13:33,639   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_calc_variant_stats’:
2021-07-14T18:13:33,647   uga/Model.c:13919:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:13:33,647   13919 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:13:33,647         |                                     ^
2021-07-14T18:13:33,688   uga/Model.c:14611:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:13:33,688   14611 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:13:33,688         |                                     ^
2021-07-14T18:13:33,724   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_filter’:
2021-07-14T18:13:33,733   uga/Model.c:15394:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare]
2021-07-14T18:13:33,733   15394 |   for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2021-07-14T18:13:33,733         |                                 ^
2021-07-14T18:16:05,863   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Model.o -o build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:16:06,338   building 'uga.Variant' extension
2021-07-14T18:16:06,339   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Variant.c -o build/temp.linux-armv7l-3.9/uga/Variant.o
2021-07-14T18:16:06,743   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:16:06,744                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:16:06,744                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:16:06,744                    from uga/Variant.c:625:
2021-07-14T18:16:06,744   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:16:06,744      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:16:06,744         |  ^~~~~~~
2021-07-14T18:16:18,029   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Variant.o -o build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:16:18,193   installing to build/bdist.linux-armv7l/wheel
2021-07-14T18:16:18,193   running install
2021-07-14T18:16:18,195   running install_lib
2021-07-14T18:16:18,201   creating build/bdist.linux-armv7l
2021-07-14T18:16:18,202   creating build/bdist.linux-armv7l/wheel
2021-07-14T18:16:18,204   creating build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,206   copying build/lib.linux-armv7l-3.9/uga/RunSnv.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,208   copying build/lib.linux-armv7l-3.9/uga/Variant.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,211   copying build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,278   copying build/lib.linux-armv7l-3.9/uga/Variant.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,280   copying build/lib.linux-armv7l-3.9/uga/Geno.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,282   copying build/lib.linux-armv7l-3.9/uga/__version__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,284   copying build/lib.linux-armv7l-3.9/uga/Parse.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,287   copying build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,307   copying build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,433   copying build/lib.linux-armv7l-3.9/uga/RunTools.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,435   copying build/lib.linux-armv7l-3.9/uga/Definitions.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,437   copying build/lib.linux-armv7l-3.9/uga/Model.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,442   copying build/lib.linux-armv7l-3.9/uga/Qsub.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,444   copying build/lib.linux-armv7l-3.9/uga/RunMeta.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,446   copying build/lib.linux-armv7l-3.9/uga/Model.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,556   copying build/lib.linux-armv7l-3.9/uga/__init__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,558   copying build/lib.linux-armv7l-3.9/uga/Variant.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,573   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroup.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,576   copying build/lib.linux-armv7l-3.9/uga/Process.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,579   copying build/lib.linux-armv7l-3.9/uga/Geno.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,629   copying build/lib.linux-armv7l-3.9/uga/RunSnvplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,632   copying build/lib.linux-armv7l-3.9/uga/__main__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,634   copying build/lib.linux-armv7l-3.9/uga/Geno.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,636   copying build/lib.linux-armv7l-3.9/uga/Args.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,640   copying build/lib.linux-armv7l-3.9/uga/RunMerge.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,643   copying build/lib.linux-armv7l-3.9/uga/RunFilter.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,645   copying build/lib.linux-armv7l-3.9/uga/Map.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,647   copying build/lib.linux-armv7l-3.9/uga/Fxns.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,649   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroupplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:18,652   running install_egg_info
2021-07-14T18:16:18,658   Copying uga.egg-info to build/bdist.linux-armv7l/wheel/uga-2.0.6-py3.9.egg-info
2021-07-14T18:16:18,676   running install_scripts
2021-07-14T18:16:18,731   creating build/bdist.linux-armv7l/wheel/uga-2.0.6.dist-info/WHEEL
2021-07-14T18:16:18,734   creating '/tmp/pip-wheel-c1wkqa03/uga-2.0.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T18:16:18,739   adding 'uga/Args.py'
2021-07-14T18:16:18,741   adding 'uga/Definitions.py'
2021-07-14T18:16:18,743   adding 'uga/Fxns.py'
2021-07-14T18:16:18,892   adding 'uga/Geno.c'
2021-07-14T18:16:19,503   adding 'uga/Geno.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:16:19,529   adding 'uga/Geno.pxd'
2021-07-14T18:16:19,532   adding 'uga/Geno.pyx'
2021-07-14T18:16:19,533   adding 'uga/Map.py'
2021-07-14T18:16:19,801   adding 'uga/Model.c'
2021-07-14T18:16:21,007   adding 'uga/Model.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:16:21,066   adding 'uga/Model.pyx'
2021-07-14T18:16:21,069   adding 'uga/Parse.py'
2021-07-14T18:16:21,070   adding 'uga/Process.py'
2021-07-14T18:16:21,072   adding 'uga/Qsub.py'
2021-07-14T18:16:21,073   adding 'uga/RunFilter.py'
2021-07-14T18:16:21,075   adding 'uga/RunMerge.py'
2021-07-14T18:16:21,076   adding 'uga/RunMeta.py'
2021-07-14T18:16:21,078   adding 'uga/RunSnv.py'
2021-07-14T18:16:21,080   adding 'uga/RunSnvgroup.py'
2021-07-14T18:16:21,083   adding 'uga/RunSnvgroupplot.py'
2021-07-14T18:16:21,086   adding 'uga/RunSnvplot.py'
2021-07-14T18:16:21,088   adding 'uga/RunTools.py'
2021-07-14T18:16:21,137   adding 'uga/Variant.c'
2021-07-14T18:16:21,293   adding 'uga/Variant.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:16:21,299   adding 'uga/Variant.pxd'
2021-07-14T18:16:21,301   adding 'uga/Variant.pyx'
2021-07-14T18:16:21,302   adding 'uga/__init__.py'
2021-07-14T18:16:21,305   adding 'uga/__main__.py'
2021-07-14T18:16:21,306   adding 'uga/__version__.py'
2021-07-14T18:16:21,308   adding 'uga-2.0.6.dist-info/METADATA'
2021-07-14T18:16:21,309   adding 'uga-2.0.6.dist-info/WHEEL'
2021-07-14T18:16:21,310   adding 'uga-2.0.6.dist-info/entry_points.txt'
2021-07-14T18:16:21,311   adding 'uga-2.0.6.dist-info/top_level.txt'
2021-07-14T18:16:21,312   adding 'uga-2.0.6.dist-info/RECORD'
2021-07-14T18:16:21,377   removing build/bdist.linux-armv7l/wheel
2021-07-14T18:16:21,552   Building wheel for uga (setup.py): finished with status 'done'
2021-07-14T18:16:21,614   Created wheel for uga: filename=uga-2.0.6-cp39-cp39-linux_armv7l.whl size=4353673 sha256=19e6ca063f7eaa8a1c777d24590b2235a74e5bd0b4ebf6f9f84e18a5f275b703
2021-07-14T18:16:21,614   Stored in directory: /tmp/pip-ephem-wheel-cache-tfp2uvzk/wheels/32/0d/92/01edc5ddb49941e43b17a33f4b45e0e87499fed2c084dbd803
2021-07-14T18:16:21,626 Successfully built uga
2021-07-14T18:16:21,777 Removed build tracker: '/tmp/pip-req-tracker-v_c0zyta'