2021-07-14T18:12:00,782 Created temporary directory: /tmp/pip-ephem-wheel-cache-2r1_53_w
2021-07-14T18:12:00,785 Created temporary directory: /tmp/pip-req-tracker-7b9hy2r8
2021-07-14T18:12:00,785 Initialized build tracking at /tmp/pip-req-tracker-7b9hy2r8
2021-07-14T18:12:00,785 Created build tracker: /tmp/pip-req-tracker-7b9hy2r8
2021-07-14T18:12:00,785 Entered build tracker: /tmp/pip-req-tracker-7b9hy2r8
2021-07-14T18:12:00,786 Created temporary directory: /tmp/pip-wheel-fydhb8zy
2021-07-14T18:12:00,816 1 location(s) to search for versions of uga:
2021-07-14T18:12:00,816 * https://pypi.org/simple/uga/
2021-07-14T18:12:00,817 Fetching project page and analyzing links: https://pypi.org/simple/uga/
2021-07-14T18:12:00,817 Getting page https://pypi.org/simple/uga/
2021-07-14T18:12:00,819 Found index url https://pypi.org/simple
2021-07-14T18:12:00,910   Found link https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz#sha256=3c47efccfbf3b8d069d31c5644a7e1c2f174d801b25c1cbce312256aa73ef185 (from https://pypi.org/simple/uga/), version: 2.0
2021-07-14T18:12:00,910   Found link https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598 (from https://pypi.org/simple/uga/), version: 2.0.1
2021-07-14T18:12:00,911   Found link https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba (from https://pypi.org/simple/uga/), version: 2.0.2
2021-07-14T18:12:00,911   Found link https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d (from https://pypi.org/simple/uga/), version: 2.0.3
2021-07-14T18:12:00,911   Found link https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581 (from https://pypi.org/simple/uga/), version: 2.0.4
2021-07-14T18:12:00,911   Found link https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e (from https://pypi.org/simple/uga/), version: 2.0.5
2021-07-14T18:12:00,912   Found link https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5 (from https://pypi.org/simple/uga/), version: 2.0.6
2021-07-14T18:12:00,912   Found link https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67 (from https://pypi.org/simple/uga/), version: 2.0.7
2021-07-14T18:12:00,912 Skipping link: not a file: https://pypi.org/simple/uga/
2021-07-14T18:12:00,930 Given no hashes to check 1 links for project 'uga': discarding no candidates
2021-07-14T18:12:00,949 Collecting uga==2.0.7
2021-07-14T18:12:00,951   Created temporary directory: /tmp/pip-unpack-rmh4fm1h
2021-07-14T18:12:01,391   Downloading uga-2.0.7.tar.gz (728 kB)
2021-07-14T18:12:01,849   Added uga==2.0.7 from https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67 to build tracker '/tmp/pip-req-tracker-7b9hy2r8'
2021-07-14T18:12:01,851     Running setup.py (path:/tmp/pip-wheel-fydhb8zy/uga_4643d62e7fde42869d097fc437654cce/setup.py) egg_info for package uga
2021-07-14T18:12:01,851     Created temporary directory: /tmp/pip-pip-egg-info-ta03psub
2021-07-14T18:12:01,852     Running command python setup.py egg_info
2021-07-14T18:12:03,937     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fydhb8zy/uga_4643d62e7fde42869d097fc437654cce/uga/Geno.pxd
2021-07-14T18:12:03,937       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:12:13,298     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fydhb8zy/uga_4643d62e7fde42869d097fc437654cce/uga/Model.pyx
2021-07-14T18:12:13,298       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:12:24,653     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fydhb8zy/uga_4643d62e7fde42869d097fc437654cce/uga/Variant.pxd
2021-07-14T18:12:24,653       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:12:26,965     Compiling uga/Geno.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:12:26,965     Compiling uga/Model.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:12:26,965     Compiling uga/Variant.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:12:26,966     [1/3] Cythonizing uga/Geno.pyx
2021-07-14T18:12:26,966     [2/3] Cythonizing uga/Model.pyx
2021-07-14T18:12:26,966     [3/3] Cythonizing uga/Variant.pyx
2021-07-14T18:12:27,008     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:12:27,008       warnings.warn(
2021-07-14T18:12:27,146     running egg_info
2021-07-14T18:12:27,149     creating /tmp/pip-pip-egg-info-ta03psub/uga.egg-info
2021-07-14T18:12:27,150     writing /tmp/pip-pip-egg-info-ta03psub/uga.egg-info/PKG-INFO
2021-07-14T18:12:27,153     writing dependency_links to /tmp/pip-pip-egg-info-ta03psub/uga.egg-info/dependency_links.txt
2021-07-14T18:12:27,155     writing entry points to /tmp/pip-pip-egg-info-ta03psub/uga.egg-info/entry_points.txt
2021-07-14T18:12:27,156     writing requirements to /tmp/pip-pip-egg-info-ta03psub/uga.egg-info/requires.txt
2021-07-14T18:12:27,157     writing top-level names to /tmp/pip-pip-egg-info-ta03psub/uga.egg-info/top_level.txt
2021-07-14T18:12:27,159     writing manifest file '/tmp/pip-pip-egg-info-ta03psub/uga.egg-info/SOURCES.txt'
2021-07-14T18:12:27,310     reading manifest file '/tmp/pip-pip-egg-info-ta03psub/uga.egg-info/SOURCES.txt'
2021-07-14T18:12:27,312     reading manifest template 'MANIFEST.in'
2021-07-14T18:12:27,314     warning: no files found matching 'uga/*.pyd'
2021-07-14T18:12:27,317     writing manifest file '/tmp/pip-pip-egg-info-ta03psub/uga.egg-info/SOURCES.txt'
2021-07-14T18:12:27,686   Source in /tmp/pip-wheel-fydhb8zy/uga_4643d62e7fde42869d097fc437654cce has version 2.0.7, which satisfies requirement uga==2.0.7 from https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67
2021-07-14T18:12:27,687   Removed uga==2.0.7 from https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67 from build tracker '/tmp/pip-req-tracker-7b9hy2r8'
2021-07-14T18:12:27,692 Created temporary directory: /tmp/pip-unpack-wu2egobs
2021-07-14T18:12:27,693 Building wheels for collected packages: uga
2021-07-14T18:12:27,697   Created temporary directory: /tmp/pip-wheel-ckk9z0ew
2021-07-14T18:12:27,697   Building wheel for uga (setup.py): started
2021-07-14T18:12:27,698   Destination directory: /tmp/pip-wheel-ckk9z0ew
2021-07-14T18:12:27,698   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fydhb8zy/uga_4643d62e7fde42869d097fc437654cce/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fydhb8zy/uga_4643d62e7fde42869d097fc437654cce/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ckk9z0ew
2021-07-14T18:12:29,602   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:12:29,603     warnings.warn(
2021-07-14T18:12:29,768   running bdist_wheel
2021-07-14T18:12:29,774   running build
2021-07-14T18:12:29,774   running build_py
2021-07-14T18:12:29,909   creating build
2021-07-14T18:12:29,910   creating build/lib.linux-armv7l-3.9
2021-07-14T18:12:29,910   creating build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,912   copying uga/RunSnv.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,914   copying uga/__version__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,916   copying uga/RunSnvgroupplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,918   copying uga/Qsub.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,920   copying uga/Parse.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,922   copying uga/Process.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,924   copying uga/Map.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,926   copying uga/Args.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,929   copying uga/RunSnvplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,932   copying uga/RunTools.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,934   copying uga/Fxns.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,936   copying uga/RunFilter.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,939   copying uga/__init__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,940   copying uga/Definitions.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,942   copying uga/__main__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,946   copying uga/RunMerge.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,949   copying uga/RunMeta.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,952   copying uga/RunSnvgroup.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:29,955   running egg_info
2021-07-14T18:12:29,972   writing uga.egg-info/PKG-INFO
2021-07-14T18:12:29,975   writing dependency_links to uga.egg-info/dependency_links.txt
2021-07-14T18:12:29,977   writing entry points to uga.egg-info/entry_points.txt
2021-07-14T18:12:29,978   writing requirements to uga.egg-info/requires.txt
2021-07-14T18:12:29,979   writing top-level names to uga.egg-info/top_level.txt
2021-07-14T18:12:29,987   reading manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:12:29,990   reading manifest template 'MANIFEST.in'
2021-07-14T18:12:29,993   warning: no files found matching 'uga/*.pyd'
2021-07-14T18:12:29,997   writing manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:12:30,000   copying uga/Geno.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:30,050   copying uga/Geno.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:30,053   copying uga/Geno.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:30,056   copying uga/Model.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:30,139   copying uga/Model.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:30,144   copying uga/Variant.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:30,160   copying uga/Variant.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:30,162   copying uga/Variant.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:30,167   running build_ext
2021-07-14T18:12:30,173   building 'uga.Geno' extension
2021-07-14T18:12:30,174   creating build/temp.linux-armv7l-3.9
2021-07-14T18:12:30,174   creating build/temp.linux-armv7l-3.9/uga
2021-07-14T18:12:30,175   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Geno.c -o build/temp.linux-armv7l-3.9/uga/Geno.o
2021-07-14T18:12:30,552   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:12:30,552                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:12:30,552                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:12:30,552                    from uga/Geno.c:634:
2021-07-14T18:12:30,553   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:12:30,553      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:12:30,553         |  ^~~~~~~
2021-07-14T18:13:36,111   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Geno.o -o build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:13:36,413   building 'uga.Model' extension
2021-07-14T18:13:36,413   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Model.c -o build/temp.linux-armv7l-3.9/uga/Model.o
2021-07-14T18:13:36,838   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:13:36,838                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:13:36,839                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:13:36,839                    from uga/Model.c:625:
2021-07-14T18:13:36,839   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:13:36,839      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:13:36,839         |  ^~~~~~~
2021-07-14T18:13:37,301   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_calc_variant_stats’:
2021-07-14T18:13:37,309   uga/Model.c:13919:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:13:37,309   13919 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:13:37,309         |                                     ^
2021-07-14T18:13:37,351   uga/Model.c:14611:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:13:37,351   14611 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:13:37,351         |                                     ^
2021-07-14T18:13:37,387   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_filter’:
2021-07-14T18:13:37,396   uga/Model.c:15394:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare]
2021-07-14T18:13:37,396   15394 |   for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2021-07-14T18:13:37,396         |                                 ^
2021-07-14T18:16:09,013   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Model.o -o build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:16:09,467   building 'uga.Variant' extension
2021-07-14T18:16:09,468   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Variant.c -o build/temp.linux-armv7l-3.9/uga/Variant.o
2021-07-14T18:16:09,879   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:16:09,879                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:16:09,879                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:16:09,880                    from uga/Variant.c:625:
2021-07-14T18:16:09,880   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:16:09,880      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:16:09,880         |  ^~~~~~~
2021-07-14T18:16:21,062   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Variant.o -o build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:16:21,220   installing to build/bdist.linux-armv7l/wheel
2021-07-14T18:16:21,221   running install
2021-07-14T18:16:21,222   running install_lib
2021-07-14T18:16:21,227   creating build/bdist.linux-armv7l
2021-07-14T18:16:21,228   creating build/bdist.linux-armv7l/wheel
2021-07-14T18:16:21,231   creating build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,233   copying build/lib.linux-armv7l-3.9/uga/Geno.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,236   copying build/lib.linux-armv7l-3.9/uga/RunSnv.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,240   copying build/lib.linux-armv7l-3.9/uga/__version__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,242   copying build/lib.linux-armv7l-3.9/uga/Variant.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,260   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroupplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,264   copying build/lib.linux-armv7l-3.9/uga/Model.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,270   copying build/lib.linux-armv7l-3.9/uga/Geno.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,273   copying build/lib.linux-armv7l-3.9/uga/Qsub.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,276   copying build/lib.linux-armv7l-3.9/uga/Parse.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,280   copying build/lib.linux-armv7l-3.9/uga/Process.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,283   copying build/lib.linux-armv7l-3.9/uga/Map.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,286   copying build/lib.linux-armv7l-3.9/uga/Args.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,291   copying build/lib.linux-armv7l-3.9/uga/RunSnvplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,295   copying build/lib.linux-armv7l-3.9/uga/Variant.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,298   copying build/lib.linux-armv7l-3.9/uga/RunTools.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,301   copying build/lib.linux-armv7l-3.9/uga/Fxns.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,304   copying build/lib.linux-armv7l-3.9/uga/RunFilter.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,307   copying build/lib.linux-armv7l-3.9/uga/__init__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,309   copying build/lib.linux-armv7l-3.9/uga/Definitions.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,312   copying build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,434   copying build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,453   copying build/lib.linux-armv7l-3.9/uga/Model.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,545   copying build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,663   copying build/lib.linux-armv7l-3.9/uga/__main__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,666   copying build/lib.linux-armv7l-3.9/uga/RunMerge.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,668   copying build/lib.linux-armv7l-3.9/uga/Geno.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,756   copying build/lib.linux-armv7l-3.9/uga/RunMeta.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,760   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroup.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,764   copying build/lib.linux-armv7l-3.9/uga/Variant.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:21,767   running install_egg_info
2021-07-14T18:16:21,779   Copying uga.egg-info to build/bdist.linux-armv7l/wheel/uga-2.0.7-py3.9.egg-info
2021-07-14T18:16:21,795   running install_scripts
2021-07-14T18:16:21,852   creating build/bdist.linux-armv7l/wheel/uga-2.0.7.dist-info/WHEEL
2021-07-14T18:16:21,854   creating '/tmp/pip-wheel-ckk9z0ew/uga-2.0.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T18:16:21,860   adding 'uga/Args.py'
2021-07-14T18:16:21,862   adding 'uga/Definitions.py'
2021-07-14T18:16:21,863   adding 'uga/Fxns.py'
2021-07-14T18:16:22,014   adding 'uga/Geno.c'
2021-07-14T18:16:22,633   adding 'uga/Geno.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:16:22,658   adding 'uga/Geno.pxd'
2021-07-14T18:16:22,661   adding 'uga/Geno.pyx'
2021-07-14T18:16:22,662   adding 'uga/Map.py'
2021-07-14T18:16:22,933   adding 'uga/Model.c'
2021-07-14T18:16:24,151   adding 'uga/Model.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:16:24,209   adding 'uga/Model.pyx'
2021-07-14T18:16:24,213   adding 'uga/Parse.py'
2021-07-14T18:16:24,214   adding 'uga/Process.py'
2021-07-14T18:16:24,216   adding 'uga/Qsub.py'
2021-07-14T18:16:24,217   adding 'uga/RunFilter.py'
2021-07-14T18:16:24,219   adding 'uga/RunMerge.py'
2021-07-14T18:16:24,220   adding 'uga/RunMeta.py'
2021-07-14T18:16:24,222   adding 'uga/RunSnv.py'
2021-07-14T18:16:24,224   adding 'uga/RunSnvgroup.py'
2021-07-14T18:16:24,227   adding 'uga/RunSnvgroupplot.py'
2021-07-14T18:16:24,230   adding 'uga/RunSnvplot.py'
2021-07-14T18:16:24,232   adding 'uga/RunTools.py'
2021-07-14T18:16:24,281   adding 'uga/Variant.c'
2021-07-14T18:16:24,439   adding 'uga/Variant.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:16:24,446   adding 'uga/Variant.pxd'
2021-07-14T18:16:24,447   adding 'uga/Variant.pyx'
2021-07-14T18:16:24,448   adding 'uga/__init__.py'
2021-07-14T18:16:24,451   adding 'uga/__main__.py'
2021-07-14T18:16:24,452   adding 'uga/__version__.py'
2021-07-14T18:16:24,455   adding 'uga-2.0.7.dist-info/METADATA'
2021-07-14T18:16:24,456   adding 'uga-2.0.7.dist-info/WHEEL'
2021-07-14T18:16:24,458   adding 'uga-2.0.7.dist-info/entry_points.txt'
2021-07-14T18:16:24,459   adding 'uga-2.0.7.dist-info/top_level.txt'
2021-07-14T18:16:24,460   adding 'uga-2.0.7.dist-info/RECORD'
2021-07-14T18:16:24,524   removing build/bdist.linux-armv7l/wheel
2021-07-14T18:16:24,694   Building wheel for uga (setup.py): finished with status 'done'
2021-07-14T18:16:24,752   Created wheel for uga: filename=uga-2.0.7-cp39-cp39-linux_armv7l.whl size=4353749 sha256=b4fb6eb8856ba46db111a66a8eb2b11d1aea08b4eb620a3ea7274516893c3af5
2021-07-14T18:16:24,753   Stored in directory: /tmp/pip-ephem-wheel-cache-2r1_53_w/wheels/c9/37/a6/782d3afc29b1722985fe3d0c6cc1d789632060ae3314e0890d
2021-07-14T18:16:24,765 Successfully built uga
2021-07-14T18:16:24,902 Removed build tracker: '/tmp/pip-req-tracker-7b9hy2r8'