2021-07-14T18:11:54,125 Created temporary directory: /tmp/pip-ephem-wheel-cache-501py5u6
2021-07-14T18:11:54,129 Created temporary directory: /tmp/pip-req-tracker-e9mp9kso
2021-07-14T18:11:54,130 Initialized build tracking at /tmp/pip-req-tracker-e9mp9kso
2021-07-14T18:11:54,130 Created build tracker: /tmp/pip-req-tracker-e9mp9kso
2021-07-14T18:11:54,130 Entered build tracker: /tmp/pip-req-tracker-e9mp9kso
2021-07-14T18:11:54,131 Created temporary directory: /tmp/pip-wheel-jahge_wp
2021-07-14T18:11:54,165 1 location(s) to search for versions of uga:
2021-07-14T18:11:54,165 * https://pypi.org/simple/uga/
2021-07-14T18:11:54,165 Fetching project page and analyzing links: https://pypi.org/simple/uga/
2021-07-14T18:11:54,166 Getting page https://pypi.org/simple/uga/
2021-07-14T18:11:54,168 Found index url https://pypi.org/simple
2021-07-14T18:11:54,279   Found link https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz#sha256=3c47efccfbf3b8d069d31c5644a7e1c2f174d801b25c1cbce312256aa73ef185 (from https://pypi.org/simple/uga/), version: 2.0
2021-07-14T18:11:54,280   Found link https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598 (from https://pypi.org/simple/uga/), version: 2.0.1
2021-07-14T18:11:54,280   Found link https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba (from https://pypi.org/simple/uga/), version: 2.0.2
2021-07-14T18:11:54,281   Found link https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d (from https://pypi.org/simple/uga/), version: 2.0.3
2021-07-14T18:11:54,281   Found link https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581 (from https://pypi.org/simple/uga/), version: 2.0.4
2021-07-14T18:11:54,282   Found link https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e (from https://pypi.org/simple/uga/), version: 2.0.5
2021-07-14T18:11:54,282   Found link https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5 (from https://pypi.org/simple/uga/), version: 2.0.6
2021-07-14T18:11:54,283   Found link https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67 (from https://pypi.org/simple/uga/), version: 2.0.7
2021-07-14T18:11:54,283 Skipping link: not a file: https://pypi.org/simple/uga/
2021-07-14T18:11:54,308 Given no hashes to check 1 links for project 'uga': discarding no candidates
2021-07-14T18:11:54,333 Collecting uga==2.0.5
2021-07-14T18:11:54,335   Created temporary directory: /tmp/pip-unpack-4af5980t
2021-07-14T18:11:54,953   Downloading uga-2.0.5.tar.gz (728 kB)
2021-07-14T18:11:55,452   Added uga==2.0.5 from https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e to build tracker '/tmp/pip-req-tracker-e9mp9kso'
2021-07-14T18:11:55,454     Running setup.py (path:/tmp/pip-wheel-jahge_wp/uga_889117ba8ae14cb2b0502f5734766e8f/setup.py) egg_info for package uga
2021-07-14T18:11:55,454     Created temporary directory: /tmp/pip-pip-egg-info-kthbdptt
2021-07-14T18:11:55,455     Running command python setup.py egg_info
2021-07-14T18:11:57,649     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jahge_wp/uga_889117ba8ae14cb2b0502f5734766e8f/uga/Geno.pxd
2021-07-14T18:11:57,650       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:12:07,889     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jahge_wp/uga_889117ba8ae14cb2b0502f5734766e8f/uga/Model.pyx
2021-07-14T18:12:07,890       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:12:20,286     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jahge_wp/uga_889117ba8ae14cb2b0502f5734766e8f/uga/Variant.pxd
2021-07-14T18:12:20,286       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:12:22,838     Compiling uga/Geno.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:12:22,839     Compiling uga/Model.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:12:22,839     Compiling uga/Variant.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:12:22,839     [1/3] Cythonizing uga/Geno.pyx
2021-07-14T18:12:22,839     [2/3] Cythonizing uga/Model.pyx
2021-07-14T18:12:22,840     [3/3] Cythonizing uga/Variant.pyx
2021-07-14T18:12:22,879     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:12:22,880       warnings.warn(
2021-07-14T18:12:23,032     running egg_info
2021-07-14T18:12:23,034     creating /tmp/pip-pip-egg-info-kthbdptt/uga.egg-info
2021-07-14T18:12:23,035     writing /tmp/pip-pip-egg-info-kthbdptt/uga.egg-info/PKG-INFO
2021-07-14T18:12:23,038     writing dependency_links to /tmp/pip-pip-egg-info-kthbdptt/uga.egg-info/dependency_links.txt
2021-07-14T18:12:23,040     writing entry points to /tmp/pip-pip-egg-info-kthbdptt/uga.egg-info/entry_points.txt
2021-07-14T18:12:23,041     writing requirements to /tmp/pip-pip-egg-info-kthbdptt/uga.egg-info/requires.txt
2021-07-14T18:12:23,042     writing top-level names to /tmp/pip-pip-egg-info-kthbdptt/uga.egg-info/top_level.txt
2021-07-14T18:12:23,044     writing manifest file '/tmp/pip-pip-egg-info-kthbdptt/uga.egg-info/SOURCES.txt'
2021-07-14T18:12:23,196     reading manifest file '/tmp/pip-pip-egg-info-kthbdptt/uga.egg-info/SOURCES.txt'
2021-07-14T18:12:23,198     reading manifest template 'MANIFEST.in'
2021-07-14T18:12:23,200     warning: no files found matching 'uga/*.pyd'
2021-07-14T18:12:23,203     writing manifest file '/tmp/pip-pip-egg-info-kthbdptt/uga.egg-info/SOURCES.txt'
2021-07-14T18:12:23,629   Source in /tmp/pip-wheel-jahge_wp/uga_889117ba8ae14cb2b0502f5734766e8f has version 2.0.5, which satisfies requirement uga==2.0.5 from https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e
2021-07-14T18:12:23,631   Removed uga==2.0.5 from https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e from build tracker '/tmp/pip-req-tracker-e9mp9kso'
2021-07-14T18:12:23,636 Created temporary directory: /tmp/pip-unpack-4m4w0n71
2021-07-14T18:12:23,637 Building wheels for collected packages: uga
2021-07-14T18:12:23,641   Created temporary directory: /tmp/pip-wheel-fl3oxyh8
2021-07-14T18:12:23,642   Building wheel for uga (setup.py): started
2021-07-14T18:12:23,642   Destination directory: /tmp/pip-wheel-fl3oxyh8
2021-07-14T18:12:23,642   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jahge_wp/uga_889117ba8ae14cb2b0502f5734766e8f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jahge_wp/uga_889117ba8ae14cb2b0502f5734766e8f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fl3oxyh8
2021-07-14T18:12:25,643   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:12:25,644     warnings.warn(
2021-07-14T18:12:25,825   running bdist_wheel
2021-07-14T18:12:25,831   running build
2021-07-14T18:12:25,831   running build_py
2021-07-14T18:12:25,972   creating build
2021-07-14T18:12:25,972   creating build/lib.linux-armv7l-3.9
2021-07-14T18:12:25,973   creating build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,975   copying uga/Map.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,977   copying uga/__version__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,978   copying uga/Fxns.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,981   copying uga/RunSnvgroupplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,983   copying uga/Parse.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,986   copying uga/RunSnvgroup.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,989   copying uga/RunTools.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,991   copying uga/Args.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,994   copying uga/RunSnv.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,997   copying uga/Qsub.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:25,999   copying uga/RunSnvplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,002   copying uga/__main__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,006   copying uga/RunMerge.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,008   copying uga/RunFilter.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,011   copying uga/RunMeta.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,013   copying uga/__init__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,015   copying uga/Definitions.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,017   copying uga/Process.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,019   running egg_info
2021-07-14T18:12:26,034   writing uga.egg-info/PKG-INFO
2021-07-14T18:12:26,036   writing dependency_links to uga.egg-info/dependency_links.txt
2021-07-14T18:12:26,038   writing entry points to uga.egg-info/entry_points.txt
2021-07-14T18:12:26,039   writing requirements to uga.egg-info/requires.txt
2021-07-14T18:12:26,040   writing top-level names to uga.egg-info/top_level.txt
2021-07-14T18:12:26,048   reading manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:12:26,051   reading manifest template 'MANIFEST.in'
2021-07-14T18:12:26,053   warning: no files found matching 'uga/*.pyd'
2021-07-14T18:12:26,057   writing manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:12:26,059   copying uga/Geno.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,104   copying uga/Geno.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,106   copying uga/Geno.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,109   copying uga/Model.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,207   copying uga/Model.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,213   copying uga/Variant.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,228   copying uga/Variant.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,230   copying uga/Variant.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:12:26,234   running build_ext
2021-07-14T18:12:26,239   building 'uga.Geno' extension
2021-07-14T18:12:26,240   creating build/temp.linux-armv7l-3.9
2021-07-14T18:12:26,241   creating build/temp.linux-armv7l-3.9/uga
2021-07-14T18:12:26,242   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Geno.c -o build/temp.linux-armv7l-3.9/uga/Geno.o
2021-07-14T18:12:26,691   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:12:26,691                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:12:26,691                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:12:26,691                    from uga/Geno.c:634:
2021-07-14T18:12:26,691   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:12:26,692      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:12:26,692         |  ^~~~~~~
2021-07-14T18:13:38,208   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Geno.o -o build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:13:38,514   building 'uga.Model' extension
2021-07-14T18:13:38,515   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Model.c -o build/temp.linux-armv7l-3.9/uga/Model.o
2021-07-14T18:13:39,035   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:13:39,036                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:13:39,036                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:13:39,036                    from uga/Model.c:625:
2021-07-14T18:13:39,036   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:13:39,036      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:13:39,036         |  ^~~~~~~
2021-07-14T18:13:39,696   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_calc_variant_stats’:
2021-07-14T18:13:39,709   uga/Model.c:13919:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:13:39,709   13919 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:13:39,709         |                                     ^
2021-07-14T18:13:39,769   uga/Model.c:14611:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:13:39,770   14611 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:13:39,770         |                                     ^
2021-07-14T18:13:39,823   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_filter’:
2021-07-14T18:13:39,836   uga/Model.c:15394:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare]
2021-07-14T18:13:39,836   15394 |   for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2021-07-14T18:13:39,836         |                                 ^
2021-07-14T18:16:32,211   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Model.o -o build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:16:32,709   building 'uga.Variant' extension
2021-07-14T18:16:32,709   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Variant.c -o build/temp.linux-armv7l-3.9/uga/Variant.o
2021-07-14T18:16:33,204   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:16:33,204                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:16:33,204                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:16:33,205                    from uga/Variant.c:625:
2021-07-14T18:16:33,205   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:16:33,205      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:16:33,205         |  ^~~~~~~
2021-07-14T18:16:45,476   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Variant.o -o build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:16:45,657   installing to build/bdist.linux-armv7l/wheel
2021-07-14T18:16:45,657   running install
2021-07-14T18:16:45,658   running install_lib
2021-07-14T18:16:45,663   creating build/bdist.linux-armv7l
2021-07-14T18:16:45,663   creating build/bdist.linux-armv7l/wheel
2021-07-14T18:16:45,665   creating build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,666   copying build/lib.linux-armv7l-3.9/uga/Geno.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,668   copying build/lib.linux-armv7l-3.9/uga/Map.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,670   copying build/lib.linux-armv7l-3.9/uga/__version__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,672   copying build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,746   copying build/lib.linux-armv7l-3.9/uga/Fxns.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,749   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroupplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,752   copying build/lib.linux-armv7l-3.9/uga/Parse.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,755   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroup.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,758   copying build/lib.linux-armv7l-3.9/uga/Geno.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,807   copying build/lib.linux-armv7l-3.9/uga/RunTools.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,809   copying build/lib.linux-armv7l-3.9/uga/Args.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,813   copying build/lib.linux-armv7l-3.9/uga/Variant.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,815   copying build/lib.linux-armv7l-3.9/uga/RunSnv.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,818   copying build/lib.linux-armv7l-3.9/uga/Qsub.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,820   copying build/lib.linux-armv7l-3.9/uga/RunSnvplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,823   copying build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,842   copying build/lib.linux-armv7l-3.9/uga/Variant.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,844   copying build/lib.linux-armv7l-3.9/uga/__main__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,846   copying build/lib.linux-armv7l-3.9/uga/RunMerge.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,849   copying build/lib.linux-armv7l-3.9/uga/RunFilter.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,851   copying build/lib.linux-armv7l-3.9/uga/RunMeta.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,853   copying build/lib.linux-armv7l-3.9/uga/__init__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,855   copying build/lib.linux-armv7l-3.9/uga/Model.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,859   copying build/lib.linux-armv7l-3.9/uga/Geno.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:45,862   copying build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:46,003   copying build/lib.linux-armv7l-3.9/uga/Variant.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:46,019   copying build/lib.linux-armv7l-3.9/uga/Definitions.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:46,021   copying build/lib.linux-armv7l-3.9/uga/Process.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:46,023   copying build/lib.linux-armv7l-3.9/uga/Model.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:16:46,118   running install_egg_info
2021-07-14T18:16:46,130   Copying uga.egg-info to build/bdist.linux-armv7l/wheel/uga-2.0.5-py3.9.egg-info
2021-07-14T18:16:46,151   running install_scripts
2021-07-14T18:16:46,213   creating build/bdist.linux-armv7l/wheel/uga-2.0.5.dist-info/WHEEL
2021-07-14T18:16:46,216   creating '/tmp/pip-wheel-fl3oxyh8/uga-2.0.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T18:16:46,223   adding 'uga/Args.py'
2021-07-14T18:16:46,224   adding 'uga/Definitions.py'
2021-07-14T18:16:46,226   adding 'uga/Fxns.py'
2021-07-14T18:16:46,387   adding 'uga/Geno.c'
2021-07-14T18:16:47,039   adding 'uga/Geno.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:16:47,065   adding 'uga/Geno.pxd'
2021-07-14T18:16:47,068   adding 'uga/Geno.pyx'
2021-07-14T18:16:47,069   adding 'uga/Map.py'
2021-07-14T18:16:47,351   adding 'uga/Model.c'
2021-07-14T18:16:48,614   adding 'uga/Model.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:16:48,672   adding 'uga/Model.pyx'
2021-07-14T18:16:48,675   adding 'uga/Parse.py'
2021-07-14T18:16:48,677   adding 'uga/Process.py'
2021-07-14T18:16:48,678   adding 'uga/Qsub.py'
2021-07-14T18:16:48,680   adding 'uga/RunFilter.py'
2021-07-14T18:16:48,682   adding 'uga/RunMerge.py'
2021-07-14T18:16:48,683   adding 'uga/RunMeta.py'
2021-07-14T18:16:48,685   adding 'uga/RunSnv.py'
2021-07-14T18:16:48,687   adding 'uga/RunSnvgroup.py'
2021-07-14T18:16:48,690   adding 'uga/RunSnvgroupplot.py'
2021-07-14T18:16:48,693   adding 'uga/RunSnvplot.py'
2021-07-14T18:16:48,695   adding 'uga/RunTools.py'
2021-07-14T18:16:48,745   adding 'uga/Variant.c'
2021-07-14T18:16:48,909   adding 'uga/Variant.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:16:48,915   adding 'uga/Variant.pxd'
2021-07-14T18:16:48,917   adding 'uga/Variant.pyx'
2021-07-14T18:16:48,918   adding 'uga/__init__.py'
2021-07-14T18:16:48,920   adding 'uga/__main__.py'
2021-07-14T18:16:48,922   adding 'uga/__version__.py'
2021-07-14T18:16:48,924   adding 'uga-2.0.5.dist-info/METADATA'
2021-07-14T18:16:48,925   adding 'uga-2.0.5.dist-info/WHEEL'
2021-07-14T18:16:48,926   adding 'uga-2.0.5.dist-info/entry_points.txt'
2021-07-14T18:16:48,927   adding 'uga-2.0.5.dist-info/top_level.txt'
2021-07-14T18:16:48,928   adding 'uga-2.0.5.dist-info/RECORD'
2021-07-14T18:16:48,988   removing build/bdist.linux-armv7l/wheel
2021-07-14T18:16:49,199   Building wheel for uga (setup.py): finished with status 'done'
2021-07-14T18:16:49,268   Created wheel for uga: filename=uga-2.0.5-cp39-cp39-linux_armv7l.whl size=4353666 sha256=f401f01d0e2d62702e3fe794e0068b94ad6f55f0a5d92c7f59c78fa17d748b32
2021-07-14T18:16:49,268   Stored in directory: /tmp/pip-ephem-wheel-cache-501py5u6/wheels/aa/eb/4f/0b3bb1f34cfee56d959cae85a5b19fbd9a662f52d95960bd34
2021-07-14T18:16:49,283 Successfully built uga
2021-07-14T18:16:49,422 Removed build tracker: '/tmp/pip-req-tracker-e9mp9kso'