2021-07-14T18:09:06,738 Created temporary directory: /tmp/pip-ephem-wheel-cache-mvcf4nd9
2021-07-14T18:09:06,743 Created temporary directory: /tmp/pip-req-tracker-p1mhccdi
2021-07-14T18:09:06,743 Initialized build tracking at /tmp/pip-req-tracker-p1mhccdi
2021-07-14T18:09:06,744 Created build tracker: /tmp/pip-req-tracker-p1mhccdi
2021-07-14T18:09:06,744 Entered build tracker: /tmp/pip-req-tracker-p1mhccdi
2021-07-14T18:09:06,745 Created temporary directory: /tmp/pip-wheel-6lina72a
2021-07-14T18:09:06,787 1 location(s) to search for versions of uga:
2021-07-14T18:09:06,787 * https://pypi.org/simple/uga/
2021-07-14T18:09:06,788 Fetching project page and analyzing links: https://pypi.org/simple/uga/
2021-07-14T18:09:06,789 Getting page https://pypi.org/simple/uga/
2021-07-14T18:09:06,792 Found index url https://pypi.org/simple
2021-07-14T18:09:06,909   Found link https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz#sha256=3c47efccfbf3b8d069d31c5644a7e1c2f174d801b25c1cbce312256aa73ef185 (from https://pypi.org/simple/uga/), version: 2.0
2021-07-14T18:09:06,910   Found link https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz#sha256=06a90713fcf59b54fd92cd6c47d702046d6b4746804a6514b68ee29724089598 (from https://pypi.org/simple/uga/), version: 2.0.1
2021-07-14T18:09:06,910   Found link https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz#sha256=78ae000ce11d7e11c01ac32ffe2a047d1435ad9e008b29c386640d506cb849ba (from https://pypi.org/simple/uga/), version: 2.0.2
2021-07-14T18:09:06,911   Found link https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz#sha256=2922cee5e42bfc74589d6a0a563987dcb3936a4b3cbe39315bbc28a412018a3d (from https://pypi.org/simple/uga/), version: 2.0.3
2021-07-14T18:09:06,912   Found link https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581 (from https://pypi.org/simple/uga/), version: 2.0.4
2021-07-14T18:09:06,913   Found link https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz#sha256=8f335f2432d842b6b450c085642fb79da9a39682240de8fe9aba89693ec1b10e (from https://pypi.org/simple/uga/), version: 2.0.5
2021-07-14T18:09:06,914   Found link https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz#sha256=ea317ff02c8028d9b1ed2d8d75616f1a044796cfa647b8158e55d92c59fae0c5 (from https://pypi.org/simple/uga/), version: 2.0.6
2021-07-14T18:09:06,915   Found link https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz#sha256=534baca24c670de30cda262ec8dbaac0711a164adbbd90c3c564b4962edebb67 (from https://pypi.org/simple/uga/), version: 2.0.7
2021-07-14T18:09:06,916 Skipping link: not a file: https://pypi.org/simple/uga/
2021-07-14T18:09:06,949 Given no hashes to check 1 links for project 'uga': discarding no candidates
2021-07-14T18:09:06,985 Collecting uga==2.0.4
2021-07-14T18:09:06,989   Created temporary directory: /tmp/pip-unpack-8ukxgzr8
2021-07-14T18:09:07,299   Downloading uga-2.0.4.tar.gz (727 kB)
2021-07-14T18:09:08,086   Added uga==2.0.4 from https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581 to build tracker '/tmp/pip-req-tracker-p1mhccdi'
2021-07-14T18:09:08,087     Running setup.py (path:/tmp/pip-wheel-6lina72a/uga_7171180821554d2f8e8096d2a026df1d/setup.py) egg_info for package uga
2021-07-14T18:09:08,089     Created temporary directory: /tmp/pip-pip-egg-info-l13588j1
2021-07-14T18:09:08,089     Running command python setup.py egg_info
2021-07-14T18:09:12,557     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-6lina72a/uga_7171180821554d2f8e8096d2a026df1d/uga/Geno.pxd
2021-07-14T18:09:12,558       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:09:30,149     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-6lina72a/uga_7171180821554d2f8e8096d2a026df1d/uga/Model.pyx
2021-07-14T18:09:30,150       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:09:51,484     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-6lina72a/uga_7171180821554d2f8e8096d2a026df1d/uga/Variant.pxd
2021-07-14T18:09:51,485       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-14T18:09:55,897     Compiling uga/Geno.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:09:55,898     Compiling uga/Model.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:09:55,899     Compiling uga/Variant.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-14T18:09:55,900     [1/3] Cythonizing uga/Geno.pyx
2021-07-14T18:09:55,900     [2/3] Cythonizing uga/Model.pyx
2021-07-14T18:09:55,901     [3/3] Cythonizing uga/Variant.pyx
2021-07-14T18:09:56,020     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:09:56,021       warnings.warn(
2021-07-14T18:09:56,324     running egg_info
2021-07-14T18:09:56,328     creating /tmp/pip-pip-egg-info-l13588j1/uga.egg-info
2021-07-14T18:09:56,330     writing /tmp/pip-pip-egg-info-l13588j1/uga.egg-info/PKG-INFO
2021-07-14T18:09:56,334     writing dependency_links to /tmp/pip-pip-egg-info-l13588j1/uga.egg-info/dependency_links.txt
2021-07-14T18:09:56,336     writing entry points to /tmp/pip-pip-egg-info-l13588j1/uga.egg-info/entry_points.txt
2021-07-14T18:09:56,338     writing requirements to /tmp/pip-pip-egg-info-l13588j1/uga.egg-info/requires.txt
2021-07-14T18:09:56,340     writing top-level names to /tmp/pip-pip-egg-info-l13588j1/uga.egg-info/top_level.txt
2021-07-14T18:09:56,351     writing manifest file '/tmp/pip-pip-egg-info-l13588j1/uga.egg-info/SOURCES.txt'
2021-07-14T18:09:56,630     reading manifest file '/tmp/pip-pip-egg-info-l13588j1/uga.egg-info/SOURCES.txt'
2021-07-14T18:09:56,643     reading manifest template 'MANIFEST.in'
2021-07-14T18:09:56,647     warning: no files found matching 'uga/*.pyd'
2021-07-14T18:09:56,651     writing manifest file '/tmp/pip-pip-egg-info-l13588j1/uga.egg-info/SOURCES.txt'
2021-07-14T18:09:57,413   Source in /tmp/pip-wheel-6lina72a/uga_7171180821554d2f8e8096d2a026df1d has version 2.0.4, which satisfies requirement uga==2.0.4 from https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581
2021-07-14T18:09:57,415   Removed uga==2.0.4 from https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz#sha256=6f56e3efb56a7ae7ffb9e5cd3503a803477bc6ee3e5d677d198c0a0848cb7581 from build tracker '/tmp/pip-req-tracker-p1mhccdi'
2021-07-14T18:09:57,423 Created temporary directory: /tmp/pip-unpack-00dyler6
2021-07-14T18:09:57,424 Building wheels for collected packages: uga
2021-07-14T18:09:57,435   Created temporary directory: /tmp/pip-wheel-nnvj4px9
2021-07-14T18:09:57,436   Building wheel for uga (setup.py): started
2021-07-14T18:09:57,436   Destination directory: /tmp/pip-wheel-nnvj4px9
2021-07-14T18:09:57,437   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6lina72a/uga_7171180821554d2f8e8096d2a026df1d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6lina72a/uga_7171180821554d2f8e8096d2a026df1d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nnvj4px9
2021-07-14T18:10:01,525   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-14T18:10:01,526     warnings.warn(
2021-07-14T18:10:01,937   running bdist_wheel
2021-07-14T18:10:01,964   running build
2021-07-14T18:10:01,964   running build_py
2021-07-14T18:10:02,262   creating build
2021-07-14T18:10:02,262   creating build/lib.linux-armv7l-3.9
2021-07-14T18:10:02,264   creating build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,265   copying uga/Map.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,269   copying uga/RunMerge.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,273   copying uga/RunSnvgroupplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,277   copying uga/Parse.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,282   copying uga/__version__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,285   copying uga/Qsub.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,289   copying uga/RunFilter.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,293   copying uga/RunMeta.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,296   copying uga/RunTools.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,300   copying uga/Process.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,303   copying uga/Fxns.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,307   copying uga/__init__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,310   copying uga/RunSnvgroup.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,314   copying uga/Args.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,326   copying uga/Definitions.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,329   copying uga/RunSnvplot.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,334   copying uga/__main__.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,339   copying uga/RunSnv.py -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,342   running egg_info
2021-07-14T18:10:02,385   writing uga.egg-info/PKG-INFO
2021-07-14T18:10:02,389   writing dependency_links to uga.egg-info/dependency_links.txt
2021-07-14T18:10:02,391   writing entry points to uga.egg-info/entry_points.txt
2021-07-14T18:10:02,393   writing requirements to uga.egg-info/requires.txt
2021-07-14T18:10:02,395   writing top-level names to uga.egg-info/top_level.txt
2021-07-14T18:10:02,406   reading manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:10:02,422   reading manifest template 'MANIFEST.in'
2021-07-14T18:10:02,425   warning: no files found matching 'uga/*.pyd'
2021-07-14T18:10:02,430   writing manifest file 'uga.egg-info/SOURCES.txt'
2021-07-14T18:10:02,444   copying uga/Geno.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,508   copying uga/Geno.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,512   copying uga/Geno.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,517   copying uga/Model.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,646   copying uga/Model.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,651   copying uga/Variant.c -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,669   copying uga/Variant.pxd -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,672   copying uga/Variant.pyx -> build/lib.linux-armv7l-3.9/uga
2021-07-14T18:10:02,677   running build_ext
2021-07-14T18:10:02,691   building 'uga.Geno' extension
2021-07-14T18:10:02,692   creating build/temp.linux-armv7l-3.9
2021-07-14T18:10:02,693   creating build/temp.linux-armv7l-3.9/uga
2021-07-14T18:10:02,695   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Geno.c -o build/temp.linux-armv7l-3.9/uga/Geno.o
2021-07-14T18:10:03,296   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:10:03,297                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:10:03,297                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:10:03,297                    from uga/Geno.c:634:
2021-07-14T18:10:03,298   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:10:03,298      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:10:03,298         |  ^~~~~~~
2021-07-14T18:12:03,235   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Geno.o -o build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:12:03,636   building 'uga.Model' extension
2021-07-14T18:12:03,637   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Model.c -o build/temp.linux-armv7l-3.9/uga/Model.o
2021-07-14T18:12:04,238   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:12:04,239                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:12:04,239                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:12:04,240                    from uga/Model.c:625:
2021-07-14T18:12:04,240   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:12:04,240      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:12:04,240         |  ^~~~~~~
2021-07-14T18:12:05,258   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_calc_variant_stats’:
2021-07-14T18:12:05,267   uga/Model.c:13919:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:12:05,267   13919 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:12:05,268         |                                     ^
2021-07-14T18:12:05,342   uga/Model.c:14611:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘long int’ [-Wsign-compare]
2021-07-14T18:12:05,343   14611 |     for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
2021-07-14T18:12:05,343         |                                     ^
2021-07-14T18:12:05,415   uga/Model.c: In function ‘__pyx_f_3uga_5Model_5Model_filter’:
2021-07-14T18:12:05,425   uga/Model.c:15394:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare]
2021-07-14T18:12:05,426   15394 |   for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2021-07-14T18:12:05,426         |                                 ^
2021-07-14T18:16:46,192   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Model.o -o build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:16:46,961   building 'uga.Variant' extension
2021-07-14T18:16:46,961   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c uga/Variant.c -o build/temp.linux-armv7l-3.9/uga/Variant.o
2021-07-14T18:16:47,547   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:16:47,548                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:16:47,548                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:16:47,548                    from uga/Variant.c:625:
2021-07-14T18:16:47,549   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:16:47,549      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:16:47,549         |  ^~~~~~~
2021-07-14T18:17:08,935   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/uga/Variant.o -o build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so
2021-07-14T18:17:09,194   installing to build/bdist.linux-armv7l/wheel
2021-07-14T18:17:09,194   running install
2021-07-14T18:17:09,195   running install_lib
2021-07-14T18:17:09,212   creating build/bdist.linux-armv7l
2021-07-14T18:17:09,212   creating build/bdist.linux-armv7l/wheel
2021-07-14T18:17:09,216   creating build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,218   copying build/lib.linux-armv7l-3.9/uga/Variant.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,237   copying build/lib.linux-armv7l-3.9/uga/Map.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,240   copying build/lib.linux-armv7l-3.9/uga/Model.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,434   copying build/lib.linux-armv7l-3.9/uga/RunMerge.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,437   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroupplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,442   copying build/lib.linux-armv7l-3.9/uga/Parse.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,446   copying build/lib.linux-armv7l-3.9/uga/__version__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,449   copying build/lib.linux-armv7l-3.9/uga/Geno.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,525   copying build/lib.linux-armv7l-3.9/uga/Qsub.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,528   copying build/lib.linux-armv7l-3.9/uga/RunFilter.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,531   copying build/lib.linux-armv7l-3.9/uga/Geno.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,534   copying build/lib.linux-armv7l-3.9/uga/RunMeta.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,537   copying build/lib.linux-armv7l-3.9/uga/Geno.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,541   copying build/lib.linux-armv7l-3.9/uga/Variant.pxd -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,544   copying build/lib.linux-armv7l-3.9/uga/RunTools.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,548   copying build/lib.linux-armv7l-3.9/uga/Process.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,551   copying build/lib.linux-armv7l-3.9/uga/Fxns.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,555   copying build/lib.linux-armv7l-3.9/uga/Variant.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,560   copying build/lib.linux-armv7l-3.9/uga/__init__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,563   copying build/lib.linux-armv7l-3.9/uga/Variant.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,583   copying build/lib.linux-armv7l-3.9/uga/Model.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,696   copying build/lib.linux-armv7l-3.9/uga/RunSnvgroup.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,699   copying build/lib.linux-armv7l-3.9/uga/Args.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,703   copying build/lib.linux-armv7l-3.9/uga/Definitions.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,706   copying build/lib.linux-armv7l-3.9/uga/Model.pyx -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,711   copying build/lib.linux-armv7l-3.9/uga/RunSnvplot.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,715   copying build/lib.linux-armv7l-3.9/uga/Geno.c -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,767   copying build/lib.linux-armv7l-3.9/uga/__main__.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,770   copying build/lib.linux-armv7l-3.9/uga/RunSnv.py -> build/bdist.linux-armv7l/wheel/uga
2021-07-14T18:17:09,773   running install_egg_info
2021-07-14T18:17:09,788   Copying uga.egg-info to build/bdist.linux-armv7l/wheel/uga-2.0.4-py3.9.egg-info
2021-07-14T18:17:09,818   running install_scripts
2021-07-14T18:17:09,906   creating build/bdist.linux-armv7l/wheel/uga-2.0.4.dist-info/WHEEL
2021-07-14T18:17:09,910   creating '/tmp/pip-wheel-nnvj4px9/uga-2.0.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T18:17:09,917   adding 'uga/Args.py'
2021-07-14T18:17:09,920   adding 'uga/Definitions.py'
2021-07-14T18:17:09,922   adding 'uga/Fxns.py'
2021-07-14T18:17:10,105   adding 'uga/Geno.c'
2021-07-14T18:17:11,229   adding 'uga/Geno.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:17:11,256   adding 'uga/Geno.pxd'
2021-07-14T18:17:11,259   adding 'uga/Geno.pyx'
2021-07-14T18:17:11,262   adding 'uga/Map.py'
2021-07-14T18:17:11,630   adding 'uga/Model.c'
2021-07-14T18:17:13,380   adding 'uga/Model.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:17:13,441   adding 'uga/Model.pyx'
2021-07-14T18:17:13,464   adding 'uga/Parse.py'
2021-07-14T18:17:13,467   adding 'uga/Process.py'
2021-07-14T18:17:13,469   adding 'uga/Qsub.py'
2021-07-14T18:17:13,472   adding 'uga/RunFilter.py'
2021-07-14T18:17:13,483   adding 'uga/RunMerge.py'
2021-07-14T18:17:13,486   adding 'uga/RunMeta.py'
2021-07-14T18:17:13,490   adding 'uga/RunSnv.py'
2021-07-14T18:17:13,493   adding 'uga/RunSnvgroup.py'
2021-07-14T18:17:13,497   adding 'uga/RunSnvgroupplot.py'
2021-07-14T18:17:13,501   adding 'uga/RunSnvplot.py'
2021-07-14T18:17:13,503   adding 'uga/RunTools.py'
2021-07-14T18:17:13,562   adding 'uga/Variant.c'
2021-07-14T18:17:13,822   adding 'uga/Variant.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T18:17:13,830   adding 'uga/Variant.pxd'
2021-07-14T18:17:13,833   adding 'uga/Variant.pyx'
2021-07-14T18:17:13,835   adding 'uga/__init__.py'
2021-07-14T18:17:13,839   adding 'uga/__main__.py'
2021-07-14T18:17:13,841   adding 'uga/__version__.py'
2021-07-14T18:17:13,846   adding 'uga-2.0.4.dist-info/METADATA'
2021-07-14T18:17:13,847   adding 'uga-2.0.4.dist-info/WHEEL'
2021-07-14T18:17:13,848   adding 'uga-2.0.4.dist-info/entry_points.txt'
2021-07-14T18:17:13,850   adding 'uga-2.0.4.dist-info/top_level.txt'
2021-07-14T18:17:13,851   adding 'uga-2.0.4.dist-info/RECORD'
2021-07-14T18:17:14,021   removing build/bdist.linux-armv7l/wheel
2021-07-14T18:17:14,414   Building wheel for uga (setup.py): finished with status 'done'
2021-07-14T18:17:14,476   Created wheel for uga: filename=uga-2.0.4-cp39-cp39-linux_armv7l.whl size=4352778 sha256=1e2e4afcd27e57550da17b606b1ed1a3e10d00c042aec434ec39f668fd9b9673
2021-07-14T18:17:14,476   Stored in directory: /tmp/pip-ephem-wheel-cache-mvcf4nd9/wheels/68/44/57/74c14ca54246bc9243b87f52815ecc0a96693c26f535ef6f6b
2021-07-14T18:17:14,494 Successfully built uga
2021-07-14T18:17:14,668 Removed build tracker: '/tmp/pip-req-tracker-p1mhccdi'