2021-07-14T18:40:05,730 Created temporary directory: /tmp/pip-ephem-wheel-cache-tnxcfo0i
2021-07-14T18:40:05,733 Created temporary directory: /tmp/pip-req-tracker-879ozueo
2021-07-14T18:40:05,734 Initialized build tracking at /tmp/pip-req-tracker-879ozueo
2021-07-14T18:40:05,734 Created build tracker: /tmp/pip-req-tracker-879ozueo
2021-07-14T18:40:05,734 Entered build tracker: /tmp/pip-req-tracker-879ozueo
2021-07-14T18:40:05,735 Created temporary directory: /tmp/pip-wheel-l3_y7ggc
2021-07-14T18:40:05,767 1 location(s) to search for versions of adaptivepele:
2021-07-14T18:40:05,767 * https://pypi.org/simple/adaptivepele/
2021-07-14T18:40:05,768 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/
2021-07-14T18:40:05,768 Getting page https://pypi.org/simple/adaptivepele/
2021-07-14T18:40:05,770 Found index url https://pypi.org/simple
2021-07-14T18:40:05,871   Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2021-07-14T18:40:05,871   Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2021-07-14T18:40:05,872   Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2021-07-14T18:40:05,872   Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2021-07-14T18:40:05,872   Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 (from https://pypi.org/simple/adaptivepele/), version: 1.6.3
2021-07-14T18:40:05,873   Found link https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb (from https://pypi.org/simple/adaptivepele/), version: 1.7
2021-07-14T18:40:05,873   Found link https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 (from https://pypi.org/simple/adaptivepele/), version: 1.7.1
2021-07-14T18:40:05,874 Skipping link: not a file: https://pypi.org/simple/adaptivepele/
2021-07-14T18:40:05,895 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates
2021-07-14T18:40:05,916 Collecting adaptivepele==1.6.2
2021-07-14T18:40:05,918   Created temporary directory: /tmp/pip-unpack-z0kewwqp
2021-07-14T18:40:07,069   Downloading AdaptivePELE-1.6.2.tar.gz (4.5 MB)
2021-07-14T18:40:08,817   Added adaptivepele==1.6.2 from https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 to build tracker '/tmp/pip-req-tracker-879ozueo'
2021-07-14T18:40:08,818     Running setup.py (path:/tmp/pip-wheel-l3_y7ggc/adaptivepele_5c5b8cfa0ed34398966895574c7ed82d/setup.py) egg_info for package adaptivepele
2021-07-14T18:40:08,819     Created temporary directory: /tmp/pip-pip-egg-info-47l15a70
2021-07-14T18:40:08,819     Running command python setup.py egg_info
2021-07-14T18:40:10,596     Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-14T18:40:10,744     running egg_info
2021-07-14T18:40:10,746     creating /tmp/pip-pip-egg-info-47l15a70/AdaptivePELE.egg-info
2021-07-14T18:40:10,748     writing /tmp/pip-pip-egg-info-47l15a70/AdaptivePELE.egg-info/PKG-INFO
2021-07-14T18:40:10,750     writing dependency_links to /tmp/pip-pip-egg-info-47l15a70/AdaptivePELE.egg-info/dependency_links.txt
2021-07-14T18:40:10,752     writing requirements to /tmp/pip-pip-egg-info-47l15a70/AdaptivePELE.egg-info/requires.txt
2021-07-14T18:40:10,753     writing top-level names to /tmp/pip-pip-egg-info-47l15a70/AdaptivePELE.egg-info/top_level.txt
2021-07-14T18:40:10,754     writing manifest file '/tmp/pip-pip-egg-info-47l15a70/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-14T18:40:10,982     reading manifest file '/tmp/pip-pip-egg-info-47l15a70/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-14T18:40:10,984     reading manifest template 'MANIFEST.in'
2021-07-14T18:40:11,031     writing manifest file '/tmp/pip-pip-egg-info-47l15a70/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-14T18:40:11,170   Source in /tmp/pip-wheel-l3_y7ggc/adaptivepele_5c5b8cfa0ed34398966895574c7ed82d has version 1.6.2, which satisfies requirement adaptivepele==1.6.2 from https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5
2021-07-14T18:40:11,171   Removed adaptivepele==1.6.2 from https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 from build tracker '/tmp/pip-req-tracker-879ozueo'
2021-07-14T18:40:11,177 Created temporary directory: /tmp/pip-unpack-trhwkju3
2021-07-14T18:40:11,177 Building wheels for collected packages: adaptivepele
2021-07-14T18:40:11,182   Created temporary directory: /tmp/pip-wheel-iu55tu5t
2021-07-14T18:40:11,183   Building wheel for adaptivepele (setup.py): started
2021-07-14T18:40:11,183   Destination directory: /tmp/pip-wheel-iu55tu5t
2021-07-14T18:40:11,183   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-l3_y7ggc/adaptivepele_5c5b8cfa0ed34398966895574c7ed82d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-l3_y7ggc/adaptivepele_5c5b8cfa0ed34398966895574c7ed82d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-iu55tu5t
2021-07-14T18:40:12,926   Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-14T18:40:13,095   running bdist_wheel
2021-07-14T18:40:13,102   running build
2021-07-14T18:40:13,102   running build_py
2021-07-14T18:40:13,270   creating build
2021-07-14T18:40:13,270   creating build/lib.linux-armv7l-3.9
2021-07-14T18:40:13,271   creating build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T18:40:13,272   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T18:40:13,274   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T18:40:13,276   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T18:40:13,277   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T18:40:13,280   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-14T18:40:13,283   creating build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T18:40:13,284   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T18:40:13,285   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T18:40:13,288   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T18:40:13,290   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-14T18:40:13,293   creating build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-14T18:40:13,294   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-14T18:40:13,295   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-14T18:40:13,298   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-14T18:40:13,302   creating build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,302   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,305   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,308   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,310   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,312   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,314   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,317   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,319   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,321   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,324   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-14T18:40:13,330   creating build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,331   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,333   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,336   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,340   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,343   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,345   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,347   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,350   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,352   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,355   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,357   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,360   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,362   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,365   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,367   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,369   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,372   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-14T18:40:13,376   creating build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,377   copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,380   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,383   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,386   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,388   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,390   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,393   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,396   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,399   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,404   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,406   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,408   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,411   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,415   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,417   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,420   copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,422   copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,425   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,427   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,430   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,432   copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,435   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,437   copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,440   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,442   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,445   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,447   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,450   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,452   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,454   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,456   copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,458   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,460   copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,463   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,465   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,467   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,470   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,473   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,475   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,477   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,479   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-14T18:40:13,483   creating build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-14T18:40:13,484   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-14T18:40:13,486   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-14T18:40:13,489   creating build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T18:40:13,490   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T18:40:13,493   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T18:40:13,502   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T18:40:13,521   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T18:40:13,531   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-14T18:40:13,541   creating build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T18:40:13,546   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T18:40:13,556   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T18:40:13,560   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T18:40:13,562   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T18:40:13,565   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-14T18:40:13,569   creating build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T18:40:13,571   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T18:40:13,575   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T18:40:13,578   copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T18:40:13,581   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T18:40:13,585   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T18:40:13,591   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-14T18:40:13,599   creating build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T18:40:13,601   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T18:40:13,606   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T18:40:13,615   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T18:40:13,625   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-14T18:40:13,641   running build_ext
2021-07-14T18:40:13,647   skipping 'AdaptivePELE/atomset/atomset.c' Cython extension (up-to-date)
2021-07-14T18:40:13,647   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2021-07-14T18:40:13,648   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2021-07-14T18:40:13,648   skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
2021-07-14T18:40:13,648   building 'AdaptivePELE.atomset.atomset' extension
2021-07-14T18:40:13,649   creating build/temp.linux-armv7l-3.9
2021-07-14T18:40:13,649   creating build/temp.linux-armv7l-3.9/AdaptivePELE
2021-07-14T18:40:13,650   creating build/temp.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-14T18:40:13,651   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/atomset.o
2021-07-14T18:40:14,214   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-14T18:40:14,215                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-14T18:40:14,215                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-14T18:40:14,215                    from AdaptivePELE/atomset/atomset.c:610:
2021-07-14T18:40:14,215   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-14T18:40:14,216      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-14T18:40:14,216         |  ^~~~~~~
2021-07-14T18:40:15,103   AdaptivePELE/atomset/atomset.c: In function ‘__Pyx_modinit_type_init_code’:
2021-07-14T18:40:15,118   AdaptivePELE/atomset/atomset.c:25169:51: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-14T18:40:15,119   25169 |   __pyx_type_12AdaptivePELE_7atomset_7atomset_Atom.tp_print = 0;
2021-07-14T18:40:15,119         |                                                   ^
2021-07-14T18:40:15,135   AdaptivePELE/atomset/atomset.c:25187:50: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-14T18:40:15,135   25187 |   __pyx_type_12AdaptivePELE_7atomset_7atomset_PDB.tp_print = 0;
2021-07-14T18:40:15,136         |                                                  ^
2021-07-14T18:40:15,152   AdaptivePELE/atomset/atomset.c:25205:75: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-14T18:40:15,152   25205 |   __pyx_type_12AdaptivePELE_7atomset_7atomset___pyx_scope_struct____iter__.tp_print = 0;
2021-07-14T18:40:15,152         |                                                                           ^
2021-07-14T18:40:15,403   AdaptivePELE/atomset/atomset.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-14T18:40:15,419   AdaptivePELE/atomset/atomset.c:27024:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,420   27024 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,420         |                     ^
2021-07-14T18:40:15,421   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,421                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,422                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,422   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T18:40:15,422     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T18:40:15,422         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,441   AdaptivePELE/atomset/atomset.c:27024:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,442   27024 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,442         |                     ^
2021-07-14T18:40:15,442   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,443                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,443                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,443   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T18:40:15,443     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T18:40:15,443         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,463   AdaptivePELE/atomset/atomset.c:27024:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,463   27024 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,464         |                     ^
2021-07-14T18:40:15,464   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,464                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,464                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,465   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T18:40:15,465     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T18:40:15,465         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,484   AdaptivePELE/atomset/atomset.c:27024:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,485   27024 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,485         |                     ^
2021-07-14T18:40:15,485   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,486                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,486                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,486   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T18:40:15,486     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T18:40:15,486         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,506   AdaptivePELE/atomset/atomset.c:27024:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,506   27024 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,506         |                     ^
2021-07-14T18:40:15,507   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,507                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,507                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,507   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T18:40:15,507     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T18:40:15,508         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,524   AdaptivePELE/atomset/atomset.c:27024:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,524   27024 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,525         |                     ^
2021-07-14T18:40:15,525   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,525                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,525                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,525   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T18:40:15,525     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T18:40:15,526         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,544   AdaptivePELE/atomset/atomset.c:27040:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,544   27040 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,544         |                         ^
2021-07-14T18:40:15,545   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,545                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,545                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,545   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T18:40:15,545     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T18:40:15,545         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,560   AdaptivePELE/atomset/atomset.c:27040:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,560   27040 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,561         |                         ^
2021-07-14T18:40:15,561   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,561                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,561                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,562   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T18:40:15,562     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T18:40:15,562         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,577   AdaptivePELE/atomset/atomset.c:27040:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,577   27040 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,577         |                         ^
2021-07-14T18:40:15,578   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,578                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,578                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,578   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T18:40:15,578     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T18:40:15,579         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,593   AdaptivePELE/atomset/atomset.c:27040:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,594   27040 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,594         |                         ^
2021-07-14T18:40:15,594   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,595                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,595                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,595   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T18:40:15,595     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T18:40:15,595         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,610   AdaptivePELE/atomset/atomset.c:27040:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,610   27040 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,611         |                         ^
2021-07-14T18:40:15,611   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,611                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,611                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,611   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-14T18:40:15,611     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-14T18:40:15,612         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:15,627   AdaptivePELE/atomset/atomset.c:27040:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-14T18:40:15,627   27040 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-14T18:40:15,628         |                         ^
2021-07-14T18:40:15,628   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-14T18:40:15,628                    from /usr/include/python3.9/Python.h:97,
2021-07-14T18:40:15,628                    from AdaptivePELE/atomset/atomset.c:4:
2021-07-14T18:40:15,628   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-14T18:40:15,628     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-14T18:40:15,628         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T18:40:16,939   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-14T18:40:17,073   Building wheel for adaptivepele (setup.py): finished with status 'error'
2021-07-14T18:40:17,073   ERROR: Failed building wheel for adaptivepele
2021-07-14T18:40:17,074   Running setup.py clean for adaptivepele
2021-07-14T18:40:17,075   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-l3_y7ggc/adaptivepele_5c5b8cfa0ed34398966895574c7ed82d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-l3_y7ggc/adaptivepele_5c5b8cfa0ed34398966895574c7ed82d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-14T18:40:18,906   Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-14T18:40:19,046   running clean
2021-07-14T18:40:19,050   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-14T18:40:19,052   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-14T18:40:19,094   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-14T18:40:19,095   'build/scripts-3.9' does not exist -- can't clean it
2021-07-14T18:40:19,095   removing 'build'
2021-07-14T18:40:19,210 Failed to build adaptivepele
2021-07-14T18:40:19,210 ERROR: Failed to build one or more wheels
2021-07-14T18:40:19,211 Exception information:
2021-07-14T18:40:19,211 Traceback (most recent call last):
2021-07-14T18:40:19,211   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-14T18:40:19,211     status = self.run(options, args)
2021-07-14T18:40:19,211   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-14T18:40:19,211     return func(self, options, args)
2021-07-14T18:40:19,211   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-14T18:40:19,211     raise CommandError(
2021-07-14T18:40:19,211 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-14T18:40:19,214 Removed build tracker: '/tmp/pip-req-tracker-879ozueo'