2021-07-14T20:11:21,496 Created temporary directory: /tmp/pip-ephem-wheel-cache-92vzkbb9 2021-07-14T20:11:21,502 Created temporary directory: /tmp/pip-req-tracker-dpspc6ew 2021-07-14T20:11:21,502 Initialized build tracking at /tmp/pip-req-tracker-dpspc6ew 2021-07-14T20:11:21,503 Created build tracker: /tmp/pip-req-tracker-dpspc6ew 2021-07-14T20:11:21,504 Entered build tracker: /tmp/pip-req-tracker-dpspc6ew 2021-07-14T20:11:21,505 Created temporary directory: /tmp/pip-wheel-nhxuzs72 2021-07-14T20:11:21,566 1 location(s) to search for versions of asap3: 2021-07-14T20:11:21,566 * https://pypi.org/simple/asap3/ 2021-07-14T20:11:21,567 Fetching project page and analyzing links: https://pypi.org/simple/asap3/ 2021-07-14T20:11:21,569 Getting page https://pypi.org/simple/asap3/ 2021-07-14T20:11:21,572 Found index url https://pypi.org/simple 2021-07-14T20:11:21,792 Found link https://files.pythonhosted.org/packages/b3/18/a0fd1f238ed751f8882f815a62354e9e6df3077a9afe218d7754a2fd6a5d/asap3-3.9.6.tar.gz#sha256=9c2895508d6ef7806769ff2bd7d783a895b145543cf906d886192ae0ffc2280d (from https://pypi.org/simple/asap3/), version: 3.9.6 2021-07-14T20:11:21,793 Found link https://files.pythonhosted.org/packages/6d/4b/7623da3d3d4086c524a94def4340bf1e1b4aee1c935420fad6123b20d678/asap3-3.10.0.tar.gz#sha256=4ccb0640ce65acecccd4e871353d6cf94521577507c397623a31e47cf6c624eb (from https://pypi.org/simple/asap3/), version: 3.10.0 2021-07-14T20:11:21,795 Found link https://files.pythonhosted.org/packages/a8/18/3552565db206a682f6c934e8f1291a71095f21b6387d3d2c284c071efe11/asap3-3.10.2.tar.gz#sha256=60ec50c9c50d1b3115edde2ab8f2f42370e08f6eb15c14de0350724d78c47df1 (from https://pypi.org/simple/asap3/), version: 3.10.2 2021-07-14T20:11:21,796 Found link https://files.pythonhosted.org/packages/46/93/a36962deb1049cd6c189fc9944213a7456fc78d7158273a4cf494503e4b0/asap3-3.10.3.tar.gz#sha256=9fabec07296c83fc33c41ac2475e57bd3a2ef688a8364bc3000e70b7195c396e (from https://pypi.org/simple/asap3/), version: 3.10.3 2021-07-14T20:11:21,797 Found link https://files.pythonhosted.org/packages/51/a7/753ffcd46d2da6bb3d07bbe7e2bf320b71e19568b43fc9f3f774cf741f33/asap3-3.10.5.tar.gz#sha256=909682a35b7336bb7deaaa75f697ba26affbff27ad17e3b9fca4a1b3717206c7 (from https://pypi.org/simple/asap3/), version: 3.10.5 2021-07-14T20:11:21,797 Found link https://files.pythonhosted.org/packages/21/ee/fcceabc5e6c11a3398a1039f4ca39c627fafe6176cc6540aedb75f4384f6/asap3-3.10.6.tar.gz#sha256=832ab0e94903efe9ee632db20c56ed605386fc2e62bf863ae3bf81092047ae95 (from https://pypi.org/simple/asap3/), version: 3.10.6 2021-07-14T20:11:21,799 Found link https://files.pythonhosted.org/packages/28/af/109859a068fb8f90b0fa9a594486480b8ae7e9f911593441d8ce82a0f9dd/asap3-3.10.7.tar.gz#sha256=20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773 (from https://pypi.org/simple/asap3/), version: 3.10.7 2021-07-14T20:11:21,800 Found link https://files.pythonhosted.org/packages/2a/66/8dec58eb472f7855d0837b93daa75825a7bc243b773566902d00b043be18/asap3-3.10.8.tar.gz#sha256=a167e89c717cc75c1ff41bb370b9454563c29333e49b7383e668094af547d139 (from https://pypi.org/simple/asap3/), version: 3.10.8 2021-07-14T20:11:21,801 Found link https://files.pythonhosted.org/packages/31/d5/4dea3371c9d83192c450b8905074653276fb33e9f0e20207471cc0025d09/asap3-3.10.10.tar.gz#sha256=58cc70379ff3de727ad2e19882082c40a4780c72ae86e21decd15a8df1e202f0 (from https://pypi.org/simple/asap3/), version: 3.10.10 2021-07-14T20:11:21,802 Found link https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 (from https://pypi.org/simple/asap3/), version: 3.11.3 2021-07-14T20:11:21,803 Found link https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a (from https://pypi.org/simple/asap3/), version: 3.11.5 2021-07-14T20:11:21,804 Found link https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 (from https://pypi.org/simple/asap3/), version: 3.11.6 2021-07-14T20:11:21,805 Found link https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b (from https://pypi.org/simple/asap3/), version: 3.11.8 2021-07-14T20:11:21,806 Found link https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce (from https://pypi.org/simple/asap3/), version: 3.11.9 2021-07-14T20:11:21,806 Found link https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 (from https://pypi.org/simple/asap3/), version: 3.11.10 2021-07-14T20:11:21,807 Found link https://files.pythonhosted.org/packages/3a/52/77063f553b0ded38f99f97c06ee7c81cc9bfeda82b571bdcb25957f80b04/asap3-3.12.1.tar.gz#sha256=6852d7b3f668b8f740f1be7a0b8ead6b831cb1c381b02448e3e9a578d9efb182 (from https://pypi.org/simple/asap3/), version: 3.12.1 2021-07-14T20:11:21,808 Found link https://files.pythonhosted.org/packages/dd/fc/d1953b172e106f00e1cc19c0f830746cb2dec3d1cdeb5ad0ce4347f5a4d9/asap3-3.12.2.tar.gz#sha256=b6c03c790ba4c9f0d231659078c26ce8193fa21314bf2fe4adaa7899d5cd9dbe (from https://pypi.org/simple/asap3/), version: 3.12.2 2021-07-14T20:11:21,808 Found link https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 (from https://pypi.org/simple/asap3/), version: 3.12.3 2021-07-14T20:11:21,809 Found link https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 (from https://pypi.org/simple/asap3/), version: 3.12.7 2021-07-14T20:11:21,810 Found link https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 (from https://pypi.org/simple/asap3/), version: 3.12.8 2021-07-14T20:11:21,811 Skipping link: not a file: https://pypi.org/simple/asap3/ 2021-07-14T20:11:21,853 Given no hashes to check 1 links for project 'asap3': discarding no candidates 2021-07-14T20:11:21,890 Collecting asap3==3.11.10 2021-07-14T20:11:21,893 Created temporary directory: /tmp/pip-unpack-ntxxngdg 2021-07-14T20:11:21,960 Downloading asap3-3.11.10.tar.gz (803 kB) 2021-07-14T20:11:24,063 Added asap3==3.11.10 from https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 to build tracker '/tmp/pip-req-tracker-dpspc6ew' 2021-07-14T20:11:24,067 Running setup.py (path:/tmp/pip-wheel-nhxuzs72/asap3_1ebe44b60f654b5a9d61b86c970e30d4/setup.py) egg_info for package asap3 2021-07-14T20:11:24,069 Created temporary directory: /tmp/pip-pip-egg-info-_61be7n4 2021-07-14T20:11:24,070 Running command python setup.py egg_info 2021-07-14T20:11:27,334 Asap version number: 3.11.10 2021-07-14T20:11:27,335 customize-local.py not found - this is OK. 2021-07-14T20:11:27,336 customize-piwheels41.py not found - this is OK. 2021-07-14T20:11:27,336 Reading customization from customize.py 2021-07-14T20:11:27,336 Recording version info into VersionInfo_autogen 2021-07-14T20:11:27,337 CC = arm-linux-gnueabihf-gcc -pthread 2021-07-14T20:11:27,337 CFLAGS = -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 2021-07-14T20:11:27,338 Identifying source files 2021-07-14T20:11:27,338 Identifying Python submodules 2021-07-14T20:11:27,338 running egg_info 2021-07-14T20:11:27,347 creating /tmp/pip-pip-egg-info-_61be7n4/asap3.egg-info 2021-07-14T20:11:27,351 writing /tmp/pip-pip-egg-info-_61be7n4/asap3.egg-info/PKG-INFO 2021-07-14T20:11:27,357 writing dependency_links to /tmp/pip-pip-egg-info-_61be7n4/asap3.egg-info/dependency_links.txt 2021-07-14T20:11:27,365 writing top-level names to /tmp/pip-pip-egg-info-_61be7n4/asap3.egg-info/top_level.txt 2021-07-14T20:11:27,369 writing manifest file '/tmp/pip-pip-egg-info-_61be7n4/asap3.egg-info/SOURCES.txt' 2021-07-14T20:11:27,877 reading manifest file '/tmp/pip-pip-egg-info-_61be7n4/asap3.egg-info/SOURCES.txt' 2021-07-14T20:11:27,880 reading manifest template 'MANIFEST.in' 2021-07-14T20:11:27,977 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T20:11:27,978 warning: no files found matching 'Test/TestParallel-openmpi.sh' 2021-07-14T20:11:27,978 adding license file 'LICENSE' 2021-07-14T20:11:27,978 adding license file 'LICENSE.LESSER' 2021-07-14T20:11:28,013 writing manifest file '/tmp/pip-pip-egg-info-_61be7n4/asap3.egg-info/SOURCES.txt' 2021-07-14T20:11:28,317 Source in /tmp/pip-wheel-nhxuzs72/asap3_1ebe44b60f654b5a9d61b86c970e30d4 has version 3.11.10, which satisfies requirement asap3==3.11.10 from https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 2021-07-14T20:11:28,318 Removed asap3==3.11.10 from https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 from build tracker '/tmp/pip-req-tracker-dpspc6ew' 2021-07-14T20:11:28,333 Created temporary directory: /tmp/pip-unpack-deha3415 2021-07-14T20:11:28,333 Building wheels for collected packages: asap3 2021-07-14T20:11:28,342 Created temporary directory: /tmp/pip-wheel-6rss1brb 2021-07-14T20:11:28,343 Building wheel for asap3 (setup.py): started 2021-07-14T20:11:28,343 Destination directory: /tmp/pip-wheel-6rss1brb 2021-07-14T20:11:28,344 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nhxuzs72/asap3_1ebe44b60f654b5a9d61b86c970e30d4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nhxuzs72/asap3_1ebe44b60f654b5a9d61b86c970e30d4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-6rss1brb 2021-07-14T20:11:31,727 Asap version number: 3.11.10 2021-07-14T20:11:31,728 customize-local.py not found - this is OK. 2021-07-14T20:11:31,729 customize-piwheels41.py not found - this is OK. 2021-07-14T20:11:31,730 Reading customization from customize.py 2021-07-14T20:11:31,769 Identifying source files 2021-07-14T20:11:31,776 Identifying Python submodules 2021-07-14T20:11:32,139 running bdist_wheel 2021-07-14T20:11:32,144 running build 2021-07-14T20:11:32,145 running build_py 2021-07-14T20:11:32,358 creating build 2021-07-14T20:11:32,359 creating build/lib.linux-armv7l-3.9 2021-07-14T20:11:32,361 creating build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,363 copying Python/asap3/version.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,367 copying Python/asap3/timing.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,370 copying Python/asap3/fixepydoc.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,373 copying Python/asap3/GuptaParameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,376 copying Python/asap3/EMT2013Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,380 copying Python/asap3/mpi.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,383 copying Python/asap3/testtools.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,387 copying Python/asap3/memory.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,391 copying Python/asap3/constraints.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,394 copying Python/asap3/__init__.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,398 copying Python/asap3/EMT2011Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,401 copying Python/asap3/EMT2011_py.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-14T20:11:32,406 creating build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T20:11:32,408 copying Python/asap3/io/bundletrajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T20:11:32,412 copying Python/asap3/io/cpu_setup.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T20:11:32,416 copying Python/asap3/io/ReadOldFiles.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T20:11:32,419 copying Python/asap3/io/trajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T20:11:32,424 copying Python/asap3/io/__init__.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-14T20:11:32,429 creating build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,431 copying Python/asap3/md/velocitydistribution.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,434 copying Python/asap3/md/verlet_fast.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,438 copying Python/asap3/md/npt.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,442 copying Python/asap3/md/nptberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,446 copying Python/asap3/md/verlet.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,449 copying Python/asap3/md/langevin.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,453 copying Python/asap3/md/__init__.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,457 copying Python/asap3/md/md.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,460 copying Python/asap3/md/nvtberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-14T20:11:32,465 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,467 copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,471 copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,475 copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,479 copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,482 copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,485 copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,489 copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,513 copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,516 copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-14T20:11:32,519 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T20:11:32,521 copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T20:11:32,524 copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T20:11:32,527 copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T20:11:32,530 copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-14T20:11:32,534 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T20:11:32,535 copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T20:11:32,539 copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T20:11:32,542 copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-14T20:11:32,548 creating build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,549 copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,552 copying Python/asap3/Tools/Timing.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,555 copying Python/asap3/Tools/ElasticConstants.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,559 copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,562 copying Python/asap3/Tools/niflheim.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,565 copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,569 copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,572 copying Python/asap3/Tools/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,575 copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,577 copying Python/asap3/Tools/MaterialProperties.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-14T20:11:32,583 creating build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,584 copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,588 copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,591 copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,594 copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,598 copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,603 copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,606 copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,609 copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,612 copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,616 copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,619 copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-14T20:11:32,625 creating build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T20:11:32,626 copying Python/asap3/setup/displacementfield.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T20:11:32,629 copying Python/asap3/setup/dislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T20:11:32,633 copying Python/asap3/setup/multidislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T20:11:32,636 copying Python/asap3/setup/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T20:11:32,638 copying Python/asap3/setup/VelocityDistribution.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-14T20:11:32,641 creating build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,643 copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,647 copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,650 copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,653 copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,657 copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,659 copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,662 copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,665 copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,669 copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-14T20:11:32,673 creating build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,674 copying Python/asap3/analysis/particle.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,677 copying Python/asap3/analysis/cutcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,680 copying Python/asap3/analysis/findcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,683 copying Python/asap3/analysis/__init__.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,685 copying Python/asap3/analysis/clusterposition.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,688 copying Python/asap3/analysis/averagepositions.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,691 copying Python/asap3/analysis/ptm.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,695 copying Python/asap3/analysis/rdf.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,699 copying Python/asap3/analysis/localstructure.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-14T20:11:32,703 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T20:11:32,704 copying Python/asap3/MonteCarlo/Start.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T20:11:32,707 copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T20:11:32,710 copying Python/asap3/MonteCarlo/Basin.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T20:11:32,713 copying Python/asap3/MonteCarlo/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T20:11:32,716 copying Python/asap3/MonteCarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-14T20:11:32,718 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T20:11:32,720 copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T20:11:32,723 copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T20:11:32,727 copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-14T20:11:32,730 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T20:11:32,731 copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T20:11:32,735 copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T20:11:32,738 copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-14T20:11:32,742 creating build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T20:11:32,743 copying Python/asap3/optimize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T20:11:32,746 copying Python/asap3/optimize/fire.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T20:11:32,748 copying Python/asap3/optimize/optimize.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T20:11:32,751 copying Python/asap3/optimize/mdmin.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-14T20:11:32,755 creating build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,756 copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,760 copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,764 copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,768 copying Python/asap3/Internal/EMTParameters.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,772 copying Python/asap3/Internal/Subject.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,774 copying Python/asap3/Internal/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,777 copying Python/asap3/Internal/CheckArray.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,780 copying Python/asap3/Internal/Collector.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,784 copying Python/asap3/Internal/checkversion.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,786 copying Python/asap3/Internal/Builtins.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,789 copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,792 copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,796 copying Python/asap3/Internal/ListOfElements.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,799 copying Python/asap3/Internal/Threads.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-14T20:11:32,803 creating build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T20:11:32,804 copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-14T20:11:32,827 running build_ext 2021-07-14T20:11:32,836 building '_asap_p3' extension 2021-07-14T20:11:32,838 creating build/temp.linux-armv7l-3.9 2021-07-14T20:11:32,839 creating build/temp.linux-armv7l-3.9/Basics 2021-07-14T20:11:32,842 creating build/temp.linux-armv7l-3.9/Brenner 2021-07-14T20:11:32,843 creating build/temp.linux-armv7l-3.9/Interface 2021-07-14T20:11:32,845 creating build/temp.linux-armv7l-3.9/PTM 2021-07-14T20:11:32,846 creating build/temp.linux-armv7l-3.9/PTM/qcprot 2021-07-14T20:11:32,847 creating build/temp.linux-armv7l-3.9/PTM/voronoi 2021-07-14T20:11:32,848 creating build/temp.linux-armv7l-3.9/Potentials 2021-07-14T20:11:32,850 creating build/temp.linux-armv7l-3.9/Tools 2021-07-14T20:11:32,851 creating build/temp.linux-armv7l-3.9/VersionInfo_autogen 2021-07-14T20:11:32,852 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/AsapObject.cpp -o build/temp.linux-armv7l-3.9/Basics/AsapObject.o 2021-07-14T20:11:34,822 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Debug.cpp -o build/temp.linux-armv7l-3.9/Basics/Debug.o 2021-07-14T20:11:37,546 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/DynamicAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o 2021-07-14T20:11:43,476 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Exception.cpp -o build/temp.linux-armv7l-3.9/Basics/Exception.o 2021-07-14T20:11:49,166 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImageAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o 2021-07-14T20:11:52,938 In file included from Basics/AsapPython.h:44, 2021-07-14T20:11:52,938 from Basics/ImageAtoms.h:31, 2021-07-14T20:11:52,939 from Basics/ImageAtoms.cpp:27: 2021-07-14T20:11:52,939 Basics/ImageAtoms.cpp: In destructor ‘virtual AsapNS::ImageAtoms::~ImageAtoms()’: 2021-07-14T20:11:52,939 Basics/Exception.h:158:5: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 2021-07-14T20:11:52,940 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T20:11:52,940 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:11:52,940 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T20:11:52,940 52 | ASSERT(refcount == 0); 2021-07-14T20:11:52,941 | ^~~~~~ 2021-07-14T20:11:52,941 Basics/Exception.h:158:5: note: in C++11 destructors default to ‘noexcept’ 2021-07-14T20:11:52,941 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-14T20:11:52,941 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:11:52,942 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-14T20:11:52,942 52 | ASSERT(refcount == 0); 2021-07-14T20:11:52,942 | ^~~~~~ 2021-07-14T20:11:52,943 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T20:11:52,943 Basics/ImageAtoms.cpp:82:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:52,943 82 | if (pos.capacity() < nTot) 2021-07-14T20:11:52,944 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T20:11:52,944 In file included from Basics/AsapPython.h:44, 2021-07-14T20:11:52,944 from Basics/ImageAtoms.h:31, 2021-07-14T20:11:52,944 from Basics/ImageAtoms.cpp:27: 2021-07-14T20:11:52,945 Basics/ImageAtoms.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:52,945 84 | ASSERT(allpositions.size() >= nTot); 2021-07-14T20:11:52,945 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T20:11:52,945 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:11:52,946 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:11:52,946 | ^~ 2021-07-14T20:11:52,951 Basics/ImageAtoms.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:52,952 86 | ASSERT(pos.size() == nTot); 2021-07-14T20:11:52,952 | ~~~~~~~~~~~^~~~~~~ 2021-07-14T20:11:52,952 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:11:52,953 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:11:52,953 | ^~ 2021-07-14T20:11:52,963 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T20:11:52,963 Basics/ImageAtoms.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:52,964 95 | ASSERT(allpositions.size() >= n); 2021-07-14T20:11:52,964 | ~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T20:11:52,964 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:11:52,965 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:11:52,965 | ^~ 2021-07-14T20:11:52,965 Basics/ImageAtoms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:52,966 97 | if (pos.capacity() < n) 2021-07-14T20:11:52,966 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T20:11:52,999 In file included from Basics/AsapPython.h:44, 2021-07-14T20:11:52,999 from Basics/ImageAtoms.h:31, 2021-07-14T20:11:53,000 from Basics/ImageAtoms.cpp:27: 2021-07-14T20:11:53,000 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::make_images(double)’: 2021-07-14T20:11:53,001 Basics/ImageAtoms.cpp:170:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:53,001 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); 2021-07-14T20:11:53,001 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:11:53,002 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:11:53,002 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:11:53,002 | ^~ 2021-07-14T20:11:53,006 Basics/ImageAtoms.cpp:221:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:53,007 221 | if (allpositions.capacity() < nSize) 2021-07-14T20:11:53,007 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T20:11:53,008 Basics/ImageAtoms.cpp:223:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:53,008 223 | if (allnumbers.capacity() < nSize) 2021-07-14T20:11:53,008 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T20:11:53,010 In file included from Basics/AsapPython.h:44, 2021-07-14T20:11:53,010 from Basics/ImageAtoms.h:31, 2021-07-14T20:11:53,011 from Basics/ImageAtoms.cpp:27: 2021-07-14T20:11:53,011 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::update_images()’: 2021-07-14T20:11:53,011 Basics/ImageAtoms.cpp:238:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:53,012 238 | ASSERT(allpositions.size() <= nSize); 2021-07-14T20:11:53,012 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:11:53,012 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:11:53,013 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:11:53,013 | ^~ 2021-07-14T20:11:53,013 Basics/ImageAtoms.cpp:241:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:11:53,014 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); 2021-07-14T20:11:53,014 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:11:53,014 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:11:53,015 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:11:53,015 | ^~ 2021-07-14T20:12:00,122 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/ImagePotential.cpp -o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o 2021-07-14T20:12:05,271 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::Vec]’: 2021-07-14T20:12:05,272 Basics/ImagePotential.cpp:93:38: required from here 2021-07-14T20:12:05,272 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:05,272 139 | for (int i = 0; i < orig_map.size(); i++) 2021-07-14T20:12:05,273 | ~~^~~~~~~~~~~~~~~~~ 2021-07-14T20:12:05,282 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::SymTensor]’: 2021-07-14T20:12:05,283 Basics/ImagePotential.cpp:118:45: required from here 2021-07-14T20:12:05,284 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:08,424 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Langevin.cpp -o build/temp.linux-armv7l-3.9/Basics/Langevin.o 2021-07-14T20:12:15,149 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Matrix3x3.cpp -o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o 2021-07-14T20:12:18,186 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MolecularDynamics.cpp -o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o 2021-07-14T20:12:21,929 In file included from Basics/AsapPython.h:44, 2021-07-14T20:12:21,930 from Basics/MolecularDynamics.h:30, 2021-07-14T20:12:21,930 from Basics/MolecularDynamics.cpp:27: 2021-07-14T20:12:21,931 Basics/MolecularDynamics.cpp: In member function ‘bool AsapNS::MolecularDynamics::CallObservers(PyObject*)’: 2021-07-14T20:12:21,931 Basics/MolecularDynamics.cpp:238:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<_object*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:21,932 238 | ASSERT(n == obs_kwargs.size()); 2021-07-14T20:12:21,932 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:21,933 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:12:21,933 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:12:21,934 | ^~ 2021-07-14T20:12:24,217 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/MonteCarloAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o 2021-07-14T20:12:29,778 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborCellLocator.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o 2021-07-14T20:12:33,762 Basics/NeighborCellLocator.cpp: In destructor ‘virtual AsapNS::NeighborCellLocator::~NeighborCellLocator()’: 2021-07-14T20:12:33,762 Basics/NeighborCellLocator.cpp:87:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:33,763 87 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T20:12:33,763 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:33,769 In file included from Basics/AsapPython.h:44, 2021-07-14T20:12:33,770 from Basics/NeighborCellLocator.h:35, 2021-07-14T20:12:33,770 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T20:12:33,770 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::MakeList()’: 2021-07-14T20:12:33,771 Basics/NeighborCellLocator.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:33,771 128 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T20:12:33,771 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T20:12:33,772 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:12:33,772 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:12:33,772 | ^~ 2021-07-14T20:12:33,793 Basics/NeighborCellLocator.cpp:324:42: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:33,793 324 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) 2021-07-14T20:12:33,793 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T20:12:33,812 In file included from Basics/AsapPython.h:44, 2021-07-14T20:12:33,812 from Basics/NeighborCellLocator.h:35, 2021-07-14T20:12:33,813 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T20:12:33,813 Basics/NeighborCellLocator.cpp:335:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:33,813 335 | ASSERT(cells.size() == nTotalCells[3]); 2021-07-14T20:12:33,814 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T20:12:33,814 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:12:33,814 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:12:33,815 | ^~ 2021-07-14T20:12:33,816 Basics/NeighborCellLocator.cpp:336:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:33,816 336 | for (int i = 0; i < cells.size(); i++) 2021-07-14T20:12:33,817 | ~~^~~~~~~~~~~~~~ 2021-07-14T20:12:33,821 Basics/NeighborCellLocator.cpp:372:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:33,821 372 | for (int i = 0; i < cells.size(); i++) 2021-07-14T20:12:33,821 | ~~^~~~~~~~~~~~~~ 2021-07-14T20:12:33,858 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::MakeNeighboringCellLists()’: 2021-07-14T20:12:33,858 Basics/NeighborCellLocator.cpp:487:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:33,858 487 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-14T20:12:33,859 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:33,872 Basics/NeighborCellLocator.cpp:490:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:33,873 490 | for (int i = 0; i < cells.size(); i++) 2021-07-14T20:12:33,873 | ~~^~~~~~~~~~~~~~ 2021-07-14T20:12:34,001 In file included from Basics/AsapPython.h:44, 2021-07-14T20:12:34,001 from Basics/NeighborCellLocator.h:35, 2021-07-14T20:12:34,002 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T20:12:34,002 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::ScaleAndNormalizePositions()’: 2021-07-14T20:12:34,002 Basics/NeighborCellLocator.cpp:944:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,003 944 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-14T20:12:34,003 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T20:12:34,003 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:12:34,004 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:12:34,004 | ^~ 2021-07-14T20:12:34,005 Basics/NeighborCellLocator.cpp:951:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,006 951 | if (wrappedPositions.capacity() < spsz) 2021-07-14T20:12:34,006 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T20:12:34,007 Basics/NeighborCellLocator.cpp:954:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,008 954 | if (offsetPositions.capacity() < spsz) 2021-07-14T20:12:34,008 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T20:12:34,013 Basics/NeighborCellLocator.cpp:991:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,013 991 | if (wrappedPositions.capacity() < spsz) 2021-07-14T20:12:34,013 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T20:12:34,014 Basics/NeighborCellLocator.cpp:994:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,015 994 | if (scaledOffsetPositions.capacity() < spsz) 2021-07-14T20:12:34,015 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-14T20:12:34,037 In file included from Basics/AsapPython.h:44, 2021-07-14T20:12:34,037 from Basics/NeighborCellLocator.h:35, 2021-07-14T20:12:34,037 from Basics/NeighborCellLocator.cpp:30: 2021-07-14T20:12:34,038 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::RenormalizePositions()’: 2021-07-14T20:12:34,038 Basics/NeighborCellLocator.cpp:1116:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,038 1116 | ASSERT(referencePositions.size() == nAtoms); 2021-07-14T20:12:34,038 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T20:12:34,039 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:12:34,039 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:12:34,039 | ^~ 2021-07-14T20:12:34,040 Basics/NeighborCellLocator.cpp:1117:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,041 1117 | ASSERT(offsetPositions.size() == nAllAtoms); 2021-07-14T20:12:34,041 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T20:12:34,041 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:12:34,042 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:12:34,042 | ^~ 2021-07-14T20:12:34,048 Basics/NeighborCellLocator.cpp:1134:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,049 1134 | ASSERT(wrappedPositions.size() == nAllAtoms); 2021-07-14T20:12:34,049 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-14T20:12:34,049 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:12:34,050 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:12:34,050 | ^~ 2021-07-14T20:12:34,077 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::print_info(int)’: 2021-07-14T20:12:34,077 Basics/NeighborCellLocator.cpp:1265:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,078 1265 | if (referencePositions.size() > n) 2021-07-14T20:12:34,078 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T20:12:34,081 Basics/NeighborCellLocator.cpp:1267:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,081 1267 | if (wrappedPositions.size() > n) 2021-07-14T20:12:34,082 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T20:12:34,084 Basics/NeighborCellLocator.cpp:1269:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,085 1269 | if (scaledPositions.size() > n) 2021-07-14T20:12:34,085 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T20:12:34,087 Basics/NeighborCellLocator.cpp:1271:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,088 1271 | if (offsetPositions.size() > n) 2021-07-14T20:12:34,088 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T20:12:34,090 Basics/NeighborCellLocator.cpp:1273:36: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,090 1273 | if (scaledOffsetPositions.size() > n) 2021-07-14T20:12:34,091 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-14T20:12:34,100 Basics/NeighborCellLocator.cpp: In member function ‘virtual long int AsapNS::NeighborCellLocator::PrintMemory() const’: 2021-07-14T20:12:34,101 Basics/NeighborCellLocator.cpp:1305:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:34,101 1305 | if (i->size() > longest) 2021-07-14T20:12:34,101 | ~~~~~~~~~~^~~~~~~~~ 2021-07-14T20:12:49,165 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList.o 2021-07-14T20:12:52,467 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::MakeList()’: 2021-07-14T20:12:52,467 Basics/NeighborList.cpp:126:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:52,467 126 | if (nAllAtoms != nbList.size()) 2021-07-14T20:12:52,468 | ~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T20:12:52,468 Basics/NeighborList.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:52,468 128 | if (fulllists && (nAllAtoms != complNbList.size())) 2021-07-14T20:12:52,469 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:52,510 Basics/NeighborList.cpp:200:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:52,511 200 | if (nbList[i].capacity() < reservedLength) 2021-07-14T20:12:52,511 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T20:12:52,512 Basics/NeighborList.cpp:210:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:12:52,512 210 | if (complNbList[i].capacity() < reservedLength) 2021-07-14T20:12:52,512 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T20:12:52,531 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T20:12:52,532 Basics/NeighborList.cpp:357:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:52,532 357 | if (size < nbList[a1].size()) 2021-07-14T20:12:52,532 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:52,554 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetFullNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T20:12:52,554 Basics/NeighborList.cpp:477:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:52,554 477 | if (size < nbList[a1].size() + complNbList[a1].size()) 2021-07-14T20:12:52,555 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:52,627 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::RemakeLists(const std::set&, std::set&)’: 2021-07-14T20:12:52,627 Basics/NeighborList.cpp:624:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T20:12:52,628 624 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != complNbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T20:12:52,632 Basics/NeighborList.cpp:654:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-14T20:12:52,632 654 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != nbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-14T20:12:52,668 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::CheckFullListConsistency(std::string, bool)’: 2021-07-14T20:12:52,668 Basics/NeighborList.cpp:756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T20:12:52,668 756 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T20:12:52,670 Basics/NeighborList.cpp:758:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T20:12:52,670 758 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T20:12:52,700 Basics/NeighborList.cpp:795:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T20:12:52,700 795 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-14T20:12:52,701 Basics/NeighborList.cpp:797:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T20:12:52,701 797 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-14T20:12:52,728 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::print_info(int)’: 2021-07-14T20:12:52,728 Basics/NeighborList.cpp:834:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:52,729 834 | for (int i = 0; i < nbList[n].size(); i++) 2021-07-14T20:12:52,729 | ~~^~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:52,732 Basics/NeighborList.cpp:840:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:52,732 840 | for (int i = 0; i < complNbList[n].size(); i++) 2021-07-14T20:12:52,733 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:52,754 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::update_translationvectors()’: 2021-07-14T20:12:52,754 Basics/NeighborList.cpp:910:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:12:52,754 910 | for (int i = 0; i < translationTable.size(); i++) 2021-07-14T20:12:52,755 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:56,953 In file included from /usr/include/c++/10/vector:72, 2021-07-14T20:12:56,954 from Basics/AtomsBasis.h:33, 2021-07-14T20:12:56,954 from Basics/Atoms.h:36, 2021-07-14T20:12:56,955 from Basics/NeighborLocator.h:41, 2021-07-14T20:12:56,955 from Basics/NeighborList.h:37, 2021-07-14T20:12:56,955 from Basics/NeighborList.cpp:29: 2021-07-14T20:12:56,956 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T20:12:56,956 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:12:56,957 721 | vector<_Tp, _Alloc>:: 2021-07-14T20:12:56,957 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:56,958 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:12:56,959 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:12:57,110 In file included from /usr/include/c++/10/vector:67, 2021-07-14T20:12:57,111 from Basics/AtomsBasis.h:33, 2021-07-14T20:12:57,111 from Basics/Atoms.h:36, 2021-07-14T20:12:57,111 from Basics/NeighborLocator.h:41, 2021-07-14T20:12:57,112 from Basics/NeighborList.h:37, 2021-07-14T20:12:57,112 from Basics/NeighborList.cpp:29: 2021-07-14T20:12:57,113 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T20:12:57,113 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:12:57,114 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T20:12:57,114 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:57,115 1666 | std::__iterator_category(__first)); 2021-07-14T20:12:57,115 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:57,116 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:12:57,141 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T20:12:57,141 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:12:57,141 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T20:12:57,142 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:57,142 1666 | std::__iterator_category(__first)); 2021-07-14T20:12:57,143 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:12:57,143 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:13:03,666 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NeighborList2013.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o 2021-07-14T20:13:06,676 Basics/NeighborList2013.cpp: In member function ‘virtual int AsapNS::NeighborList2013::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-14T20:13:06,677 Basics/NeighborList2013.cpp:33:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:13:06,677 33 | if (size < nbList[a1].size()) 2021-07-14T20:13:06,677 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:08,356 In file included from /usr/include/c++/10/vector:72, 2021-07-14T20:13:08,356 from Basics/AtomsBasis.h:33, 2021-07-14T20:13:08,357 from Basics/Atoms.h:36, 2021-07-14T20:13:08,357 from Basics/NeighborLocator.h:41, 2021-07-14T20:13:08,357 from Basics/NeighborList.h:37, 2021-07-14T20:13:08,357 from Basics/NeighborList2013.h:11, 2021-07-14T20:13:08,358 from Basics/NeighborList2013.cpp:8: 2021-07-14T20:13:08,358 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T20:13:08,359 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:13:08,359 721 | vector<_Tp, _Alloc>:: 2021-07-14T20:13:08,359 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:08,359 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:13:08,359 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:13:08,571 In file included from /usr/include/c++/10/vector:67, 2021-07-14T20:13:08,572 from Basics/AtomsBasis.h:33, 2021-07-14T20:13:08,572 from Basics/Atoms.h:36, 2021-07-14T20:13:08,572 from Basics/NeighborLocator.h:41, 2021-07-14T20:13:08,572 from Basics/NeighborList.h:37, 2021-07-14T20:13:08,573 from Basics/NeighborList2013.h:11, 2021-07-14T20:13:08,573 from Basics/NeighborList2013.cpp:8: 2021-07-14T20:13:08,573 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-14T20:13:08,573 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:13:08,574 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T20:13:08,574 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:08,574 1666 | std::__iterator_category(__first)); 2021-07-14T20:13:08,575 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:08,575 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:13:08,595 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-14T20:13:08,595 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:13:08,595 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T20:13:08,596 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:08,596 1666 | std::__iterator_category(__first)); 2021-07-14T20:13:08,596 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:08,596 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:13:09,417 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/NormalAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o 2021-07-14T20:13:12,448 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_numbers(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T20:13:12,448 Basics/NormalAtoms.cpp:426:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:13:12,449 426 | if (numbers.size() != nAtoms+nGhosts) 2021-07-14T20:13:12,449 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T20:13:12,464 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_positions(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-14T20:13:12,465 Basics/NormalAtoms.cpp:471:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:13:12,465 471 | bool pos_resized = (positions.size() != nAtoms+nGhosts); 2021-07-14T20:13:12,466 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T20:13:12,482 In file included from Basics/AsapPython.h:44, 2021-07-14T20:13:12,482 from Basics/NormalAtoms.cpp:27: 2021-07-14T20:13:12,483 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T20:13:12,483 Basics/NormalAtoms.cpp:529:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:13:12,483 529 | ASSERT(positions.size() == nAtoms + nGhosts); 2021-07-14T20:13:12,484 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:12,484 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:13:12,484 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:13:12,485 | ^~ 2021-07-14T20:13:12,485 Basics/NormalAtoms.cpp:530:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:13:12,485 530 | if (pos.capacity() < nAtoms + nGhosts) 2021-07-14T20:13:12,486 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:12,502 Basics/NormalAtoms.cpp:536:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T20:13:12,503 536 | if (pos.capacity() < nAtoms) 2021-07-14T20:13:12,503 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:13:12,503 In file included from Basics/AsapPython.h:44, 2021-07-14T20:13:12,504 from Basics/NormalAtoms.cpp:27: 2021-07-14T20:13:12,504 Basics/NormalAtoms.cpp:539:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-14T20:13:12,504 539 | ASSERT(pos.size() == nAtoms); 2021-07-14T20:13:12,504 | ~~~~~~~~~~~^~~~~~~~~ 2021-07-14T20:13:12,505 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:13:12,505 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:13:12,505 | ^~ 2021-07-14T20:13:12,506 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-14T20:13:12,506 Basics/NormalAtoms.cpp:551:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:13:12,506 551 | ASSERT(positions.size() >= n); 2021-07-14T20:13:12,506 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-14T20:13:12,507 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:13:12,507 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:13:12,507 | ^~ 2021-07-14T20:13:12,508 Basics/NormalAtoms.cpp:553:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:13:12,508 553 | if (pos.capacity() < n) 2021-07-14T20:13:12,508 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T20:13:16,436 In file included from /usr/include/c++/10/vector:72, 2021-07-14T20:13:16,437 from Basics/AtomsBasis.h:33, 2021-07-14T20:13:16,437 from Basics/NormalAtoms.h:33, 2021-07-14T20:13:16,437 from Basics/NormalAtoms.cpp:29: 2021-07-14T20:13:16,438 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-14T20:13:16,439 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:13:16,439 721 | vector<_Tp, _Alloc>:: 2021-07-14T20:13:16,440 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:16,440 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:13:16,441 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:13:18,995 In file included from /usr/include/c++/10/vector:67, 2021-07-14T20:13:18,995 from Basics/AtomsBasis.h:33, 2021-07-14T20:13:18,996 from Basics/NormalAtoms.h:33, 2021-07-14T20:13:18,996 from Basics/NormalAtoms.cpp:29: 2021-07-14T20:13:18,996 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-14T20:13:18,996 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:13:18,997 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T20:13:18,997 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:18,997 1666 | std::__iterator_category(__first)); 2021-07-14T20:13:18,997 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:18,998 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:13:18,999 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:13:18,999 1665 | _M_range_insert(__pos, __first, __last, 2021-07-14T20:13:19,000 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:19,000 1666 | std::__iterator_category(__first)); 2021-07-14T20:13:19,000 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:13:19,001 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:13:20,720 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/RandomNumbers.cpp -o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o 2021-07-14T20:13:24,470 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Timing.cpp -o build/temp.linux-armv7l-3.9/Basics/Timing.o 2021-07-14T20:13:28,213 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/Vec.cpp -o build/temp.linux-armv7l-3.9/Basics/Vec.o 2021-07-14T20:13:31,132 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Basics/VelocityVerlet.cpp -o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o 2021-07-14T20:13:37,190 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/BrennerPotential.cpp -o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o 2021-07-14T20:13:44,828 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/bcuint.cpp -o build/temp.linux-armv7l-3.9/Brenner/bcuint.o 2021-07-14T20:13:50,811 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/caguts.cpp -o build/temp.linux-armv7l-3.9/Brenner/caguts.o 2021-07-14T20:13:57,917 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/expand.cpp -o build/temp.linux-armv7l-3.9/Brenner/expand.o 2021-07-14T20:14:00,341 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/inter2d_iv.cpp -o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o 2021-07-14T20:14:00,601 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/mtable.cpp -o build/temp.linux-armv7l-3.9/Brenner/mtable.o 2021-07-14T20:14:07,202 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/pibond.cpp -o build/temp.linux-armv7l-3.9/Brenner/pibond.o 2021-07-14T20:14:18,019 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radic.cpp -o build/temp.linux-armv7l-3.9/Brenner/radic.o 2021-07-14T20:14:23,480 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/radicdata.cpp -o build/temp.linux-armv7l-3.9/Brenner/radicdata.o 2021-07-14T20:14:24,125 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/sili_germ.cpp -o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o 2021-07-14T20:14:29,823 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Brenner/spgch.cpp -o build/temp.linux-armv7l-3.9/Brenner/spgch.o 2021-07-14T20:14:34,359 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/AsapSerial.cpp -o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o 2021-07-14T20:14:38,102 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/DynamicsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o 2021-07-14T20:14:41,885 In file included from Basics/AsapPython.h:44, 2021-07-14T20:14:41,886 from Interface/DynamicsInterface.h:29, 2021-07-14T20:14:41,886 from Interface/DynamicsInterface.cpp:26: 2021-07-14T20:14:41,887 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T20:14:41,887 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:41,887 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T20:14:41,888 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:41,888 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:41,888 | ^~ 2021-07-14T20:14:41,889 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T20:14:41,889 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:41,890 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T20:14:41,890 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:41,890 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:41,891 | ^~ 2021-07-14T20:14:41,900 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T20:14:41,900 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:41,901 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T20:14:41,901 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:41,902 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:41,902 | ^~ 2021-07-14T20:14:41,903 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T20:14:41,903 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:41,904 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T20:14:41,904 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:41,904 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:41,905 | ^~ 2021-07-14T20:14:41,918 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T20:14:41,918 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:41,918 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T20:14:41,919 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:41,919 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:41,919 | ^~ 2021-07-14T20:14:41,926 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_VelocityVerletInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T20:14:41,926 Interface/DynamicsInterface.cpp:78:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,927 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T20:14:41,927 | ^~~~~~~ 2021-07-14T20:14:41,928 Interface/DynamicsInterface.cpp:78:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,928 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T20:14:41,928 | ^~~~~~ 2021-07-14T20:14:41,929 Interface/DynamicsInterface.cpp:78:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,929 78 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-14T20:14:41,929 | ^~~~~~~~~~ 2021-07-14T20:14:41,930 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_LangevinInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T20:14:41,930 Interface/DynamicsInterface.cpp:116:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,930 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T20:14:41,931 | ^~~~~~~ 2021-07-14T20:14:41,931 Interface/DynamicsInterface.cpp:116:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,932 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T20:14:41,932 | ^~~~~~ 2021-07-14T20:14:41,932 Interface/DynamicsInterface.cpp:116:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,933 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T20:14:41,933 | ^~~~~~~~~~ 2021-07-14T20:14:41,933 Interface/DynamicsInterface.cpp:116:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,934 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T20:14:41,934 | ^~~~~~~ 2021-07-14T20:14:41,934 Interface/DynamicsInterface.cpp:116:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,935 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T20:14:41,935 | ^~~~~~~ 2021-07-14T20:14:41,935 Interface/DynamicsInterface.cpp:116:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,936 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T20:14:41,936 | ^~~~ 2021-07-14T20:14:41,937 Interface/DynamicsInterface.cpp:116:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,937 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T20:14:41,937 | ^~~~ 2021-07-14T20:14:41,938 Interface/DynamicsInterface.cpp:116:87: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,938 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T20:14:41,938 | ^~~~~~~ 2021-07-14T20:14:41,939 Interface/DynamicsInterface.cpp:116:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,939 116 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-14T20:14:41,940 | ^~~~~~ 2021-07-14T20:14:41,940 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DynamicsRun(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T20:14:41,940 Interface/DynamicsInterface.cpp:162:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,941 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T20:14:41,941 | ^~~~~~~ 2021-07-14T20:14:41,961 Interface/DynamicsInterface.cpp:162:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,962 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T20:14:41,962 | ^~~~~~~~~~~ 2021-07-14T20:14:41,963 Interface/DynamicsInterface.cpp:162:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,963 162 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-14T20:14:41,963 | ^~~~~ 2021-07-14T20:14:41,963 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetScalarConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T20:14:41,964 Interface/DynamicsInterface.cpp:190:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,964 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,964 | ^~~~~~ 2021-07-14T20:14:41,965 Interface/DynamicsInterface.cpp:190:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,965 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,965 | ^~~~ 2021-07-14T20:14:41,966 Interface/DynamicsInterface.cpp:190:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,966 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,966 | ^~~~ 2021-07-14T20:14:41,966 Interface/DynamicsInterface.cpp:190:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,967 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,967 | ^~~~~~~ 2021-07-14T20:14:41,967 Interface/DynamicsInterface.cpp:190:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,968 190 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,968 | ^~~~~~ 2021-07-14T20:14:41,968 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetVectorConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T20:14:41,969 Interface/DynamicsInterface.cpp:214:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,969 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,969 | ^~~~~~ 2021-07-14T20:14:41,970 Interface/DynamicsInterface.cpp:214:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,970 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,970 | ^~~~ 2021-07-14T20:14:41,971 Interface/DynamicsInterface.cpp:214:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,971 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,981 | ^~~~ 2021-07-14T20:14:41,982 Interface/DynamicsInterface.cpp:214:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,982 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,983 | ^~~~~~~ 2021-07-14T20:14:41,983 Interface/DynamicsInterface.cpp:214:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,983 214 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-14T20:14:41,984 | ^~~~~~ 2021-07-14T20:14:41,984 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvGetRandom(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-14T20:14:41,984 Interface/DynamicsInterface.cpp:251:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:41,985 251 | static char *kwlist[] = {"gaussian", NULL}; 2021-07-14T20:14:41,985 | ^~~~~~~~~~ 2021-07-14T20:14:43,546 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o 2021-07-14T20:14:46,948 In file included from Basics/AsapPython.h:44, 2021-07-14T20:14:46,948 from Interface/EMTParameterProviderInterface.cpp:28: 2021-07-14T20:14:46,948 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T20:14:46,949 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:46,949 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T20:14:46,949 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:46,950 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:46,950 | ^~ 2021-07-14T20:14:46,967 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T20:14:46,968 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:46,968 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T20:14:46,969 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:46,969 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:46,969 | ^~ 2021-07-14T20:14:46,981 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T20:14:46,981 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:46,981 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T20:14:46,982 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:46,982 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:46,982 | ^~ 2021-07-14T20:14:47,008 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T20:14:47,008 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:47,009 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T20:14:47,009 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:47,009 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:47,009 | ^~ 2021-07-14T20:14:47,046 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T20:14:47,047 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:47,047 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T20:14:47,048 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:47,048 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:47,049 | ^~ 2021-07-14T20:14:48,277 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ExceptionInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o 2021-07-14T20:14:51,257 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/NeighborLocatorInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o 2021-07-14T20:14:54,198 In file included from Basics/AsapPython.h:44, 2021-07-14T20:14:54,198 from Interface/NeighborLocatorInterface.cpp:27: 2021-07-14T20:14:54,198 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T20:14:54,199 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:54,199 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T20:14:54,199 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:54,199 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:54,199 | ^~ 2021-07-14T20:14:54,213 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T20:14:54,214 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:54,214 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T20:14:54,215 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:54,215 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:54,215 | ^~ 2021-07-14T20:14:54,226 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T20:14:54,226 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:54,227 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T20:14:54,227 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:54,227 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:54,228 | ^~ 2021-07-14T20:14:54,242 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T20:14:54,242 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:54,242 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T20:14:54,243 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:54,243 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:54,243 | ^~ 2021-07-14T20:14:54,271 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T20:14:54,272 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:14:54,272 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T20:14:54,272 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:14:54,273 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:14:54,273 | ^~ 2021-07-14T20:14:54,737 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborList_Py(PyObject*, PyObject*, PyObject*)’: 2021-07-14T20:14:54,737 Interface/NeighborLocatorInterface.cpp:166:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:54,738 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T20:14:54,738 | ^~~~~~ 2021-07-14T20:14:54,738 Interface/NeighborLocatorInterface.cpp:166:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:54,739 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T20:14:54,739 | ^~~~~~~ 2021-07-14T20:14:54,739 Interface/NeighborLocatorInterface.cpp:166:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:54,740 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T20:14:54,740 | ^~~~~~~~~~~~~ 2021-07-14T20:14:54,740 Interface/NeighborLocatorInterface.cpp:166:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:54,741 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-14T20:14:54,741 | ^~~~~~ 2021-07-14T20:14:54,742 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborCellLocator_Serial(PyObject*, PyObject*, PyObject*)’: 2021-07-14T20:14:54,742 Interface/NeighborLocatorInterface.cpp:218:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:54,742 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T20:14:54,743 | ^~~~~~ 2021-07-14T20:14:54,743 Interface/NeighborLocatorInterface.cpp:218:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:54,743 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T20:14:54,744 | ^~~~~~~ 2021-07-14T20:14:54,744 Interface/NeighborLocatorInterface.cpp:218:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:54,745 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T20:14:54,745 | ^~~~~~~~~~~~~ 2021-07-14T20:14:54,808 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNB(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-14T20:14:54,808 Interface/NeighborLocatorInterface.cpp:395:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:54,809 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T20:14:54,809 | ^~~ 2021-07-14T20:14:54,810 Interface/NeighborLocatorInterface.cpp:395:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:14:54,810 395 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-14T20:14:54,811 | ^~~~~~ 2021-07-14T20:14:58,904 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/OpenMPInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o 2021-07-14T20:15:01,918 Interface/OpenMPInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_set_num_threads(PyObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:01,918 Interface/OpenMPInterface.cpp:82:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:01,919 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T20:15:01,919 | ^~~ 2021-07-14T20:15:01,920 Interface/OpenMPInterface.cpp:82:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:01,920 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-14T20:15:01,920 | ^~~~~~~~~~~~ 2021-07-14T20:15:02,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PTMInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o 2021-07-14T20:15:05,984 Interface/PTMInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_PTMall(PyObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:05,984 Interface/PTMInterface.cpp:99:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:05,985 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T20:15:05,985 | ^~~~~~~ 2021-07-14T20:15:05,986 Interface/PTMInterface.cpp:99:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:05,986 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T20:15:05,987 | ^~~~~~~~ 2021-07-14T20:15:05,987 Interface/PTMInterface.cpp:99:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:05,987 99 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-14T20:15:05,988 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:15:05,988 Interface/PTMInterface.cpp:100:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:05,988 100 | "calculate_strains", "quick", 2021-07-14T20:15:05,989 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:15:05,989 Interface/PTMInterface.cpp:100:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:05,990 100 | "calculate_strains", "quick", 2021-07-14T20:15:05,990 | ^~~~~~~ 2021-07-14T20:15:05,991 Interface/PTMInterface.cpp:101:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:05,991 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T20:15:05,992 | ^~~~~~~~~~~~~~~ 2021-07-14T20:15:05,992 Interface/PTMInterface.cpp:101:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:05,992 101 | "return_nblist", "return_mappings", NULL}; 2021-07-14T20:15:05,993 | ^~~~~~~~~~~~~~~~~ 2021-07-14T20:15:06,028 In file included from /usr/include/python3.9/Python.h:61, 2021-07-14T20:15:06,028 from Basics/AsapPython.h:38, 2021-07-14T20:15:06,028 from Interface/PTMInterface.h:30, 2021-07-14T20:15:06,029 from Interface/PTMInterface.cpp:1: 2021-07-14T20:15:06,029 Interface/PTMInterface.cpp:303:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:15:06,029 303 | assert(m < indices.size()); 2021-07-14T20:15:06,030 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T20:15:06,030 Interface/PTMInterface.cpp:305:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:15:06,031 305 | assert(idx >= 0 && idx < indices.size()); 2021-07-14T20:15:06,031 | ~~~~^~~~~~~~~~~~~~~~ 2021-07-14T20:15:06,791 Interface/PTMInterface.cpp: At global scope: 2021-07-14T20:15:06,792 Interface/PTMInterface.cpp:11:18: warning: ‘PyObject* error(PyObject*, char*)’ defined but not used [-Wunused-function] 2021-07-14T20:15:06,792 11 | static PyObject* error(PyObject* type, char* msg) 2021-07-14T20:15:06,792 | ^~~~~ 2021-07-14T20:15:10,749 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PotentialInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o 2021-07-14T20:15:13,310 In file included from Basics/AsapPython.h:44, 2021-07-14T20:15:13,310 from Interface/PotentialInterface.cpp:29: 2021-07-14T20:15:13,310 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T20:15:13,311 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:13,311 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T20:15:13,312 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:13,312 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:13,313 | ^~ 2021-07-14T20:15:13,328 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T20:15:13,328 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:13,329 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T20:15:13,329 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:13,330 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:13,330 | ^~ 2021-07-14T20:15:13,344 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T20:15:13,344 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:13,345 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T20:15:13,345 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:13,345 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:13,346 | ^~ 2021-07-14T20:15:13,362 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T20:15:13,363 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:13,363 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T20:15:13,364 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:13,364 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:13,365 | ^~ 2021-07-14T20:15:13,381 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T20:15:13,382 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:13,382 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T20:15:13,383 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:13,383 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:13,384 | ^~ 2021-07-14T20:15:13,855 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:13,855 Interface/PotentialInterface.cpp:201:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,856 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T20:15:13,856 | ^~~~~~ 2021-07-14T20:15:13,856 Interface/PotentialInterface.cpp:201:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,857 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T20:15:13,857 | ^~~~~~~~~ 2021-07-14T20:15:13,861 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMT2013Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:13,861 Interface/PotentialInterface.cpp:234:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,861 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T20:15:13,862 | ^~~~~~~~~~~~ 2021-07-14T20:15:13,863 Interface/PotentialInterface.cpp:234:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,863 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T20:15:13,863 | ^~~~~~~~~~~~~~~~~ 2021-07-14T20:15:13,864 Interface/PotentialInterface.cpp:234:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,865 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-14T20:15:13,865 | ^~~~~~~~~ 2021-07-14T20:15:13,870 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MonteCarloEMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:13,871 Interface/PotentialInterface.cpp:270:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,871 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T20:15:13,872 | ^~~~~~ 2021-07-14T20:15:13,872 Interface/PotentialInterface.cpp:270:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,873 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-14T20:15:13,873 | ^~~~~~~~~ 2021-07-14T20:15:13,876 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RGLInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:13,877 Interface/PotentialInterface.cpp:291:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,877 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T20:15:13,877 | ^~~~~~~~~~ 2021-07-14T20:15:13,878 Interface/PotentialInterface.cpp:291:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,879 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T20:15:13,879 | ^~~ 2021-07-14T20:15:13,880 Interface/PotentialInterface.cpp:291:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,881 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T20:15:13,881 | ^~~ 2021-07-14T20:15:13,892 Interface/PotentialInterface.cpp:291:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,892 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T20:15:13,893 | ^~~ 2021-07-14T20:15:13,893 Interface/PotentialInterface.cpp:291:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,893 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T20:15:13,894 | ^~~~~~ 2021-07-14T20:15:13,894 Interface/PotentialInterface.cpp:291:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,895 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-14T20:15:13,895 | ^~~~ 2021-07-14T20:15:13,896 Interface/PotentialInterface.cpp:292:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,896 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T20:15:13,896 | ^~~~ 2021-07-14T20:15:13,897 Interface/PotentialInterface.cpp:292:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,897 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T20:15:13,898 | ^~~~ 2021-07-14T20:15:13,898 Interface/PotentialInterface.cpp:292:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,898 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T20:15:13,899 | ^~~~ 2021-07-14T20:15:13,899 Interface/PotentialInterface.cpp:292:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,899 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T20:15:13,900 | ^~~~ 2021-07-14T20:15:13,900 Interface/PotentialInterface.cpp:292:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,900 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T20:15:13,901 | ^~~~ 2021-07-14T20:15:13,904 Interface/PotentialInterface.cpp:292:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,906 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-14T20:15:13,907 | ^~~~ 2021-07-14T20:15:13,907 Interface/PotentialInterface.cpp:293:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,908 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T20:15:13,908 | ^~~~~ 2021-07-14T20:15:13,908 Interface/PotentialInterface.cpp:293:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,909 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T20:15:13,909 | ^~~~~ 2021-07-14T20:15:13,912 Interface/PotentialInterface.cpp:293:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,912 293 | "rcs", "rce", "verbose", NULL}; 2021-07-14T20:15:13,913 | ^~~~~~~~~ 2021-07-14T20:15:13,913 Interface/PotentialInterface.cpp: In function ‘int PyAsap_LennardJonesInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:13,913 Interface/PotentialInterface.cpp:355:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,914 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T20:15:13,914 | ^~~~~~~~~~~~~ 2021-07-14T20:15:13,915 Interface/PotentialInterface.cpp:355:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,915 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T20:15:13,915 | ^~~~~~~~~~ 2021-07-14T20:15:13,916 Interface/PotentialInterface.cpp:355:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,916 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T20:15:13,916 | ^~~~~~~~~ 2021-07-14T20:15:13,916 Interface/PotentialInterface.cpp:355:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,917 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-14T20:15:13,917 | ^~~~~~~ 2021-07-14T20:15:13,917 Interface/PotentialInterface.cpp:356:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,918 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T20:15:13,918 | ^~~~~~~~ 2021-07-14T20:15:13,918 Interface/PotentialInterface.cpp:356:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,919 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T20:15:13,919 | ^~~~~~ 2021-07-14T20:15:13,919 Interface/PotentialInterface.cpp:356:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,920 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T20:15:13,920 | ^~~~~~~~~~ 2021-07-14T20:15:13,921 Interface/PotentialInterface.cpp:356:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,921 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-14T20:15:13,932 | ^~~~~~~~~ 2021-07-14T20:15:13,933 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RahmanStillingerLembergInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:13,933 Interface/PotentialInterface.cpp:394:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,933 394 | static char *kwlist[] = {"numElements", 2021-07-14T20:15:13,934 | ^~~~~~~~~~~~~ 2021-07-14T20:15:13,934 Interface/PotentialInterface.cpp:395:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,935 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T20:15:13,935 | ^~~~ 2021-07-14T20:15:13,935 Interface/PotentialInterface.cpp:395:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,936 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T20:15:13,936 | ^~~~ 2021-07-14T20:15:13,937 Interface/PotentialInterface.cpp:395:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,937 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T20:15:13,938 | ^~~ 2021-07-14T20:15:13,938 Interface/PotentialInterface.cpp:395:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,938 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T20:15:13,939 | ^~~~ 2021-07-14T20:15:13,939 Interface/PotentialInterface.cpp:395:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,939 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T20:15:13,940 | ^~~~ 2021-07-14T20:15:13,940 Interface/PotentialInterface.cpp:395:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,940 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-14T20:15:13,941 | ^~~~ 2021-07-14T20:15:13,941 Interface/PotentialInterface.cpp:396:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,962 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T20:15:13,962 | ^~~~ 2021-07-14T20:15:13,962 Interface/PotentialInterface.cpp:396:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,963 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T20:15:13,963 | ^~~~ 2021-07-14T20:15:13,963 Interface/PotentialInterface.cpp:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,964 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T20:15:13,964 | ^~~~ 2021-07-14T20:15:13,964 Interface/PotentialInterface.cpp:396:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,965 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T20:15:13,965 | ^~~~ 2021-07-14T20:15:13,965 Interface/PotentialInterface.cpp:396:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,966 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T20:15:13,966 | ^~~~ 2021-07-14T20:15:13,967 Interface/PotentialInterface.cpp:396:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,967 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-14T20:15:13,967 | ^~~~ 2021-07-14T20:15:13,967 Interface/PotentialInterface.cpp:397:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,968 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T20:15:13,968 | ^~~~~~~~~~ 2021-07-14T20:15:13,968 Interface/PotentialInterface.cpp:397:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,969 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T20:15:13,969 | ^~~~~~~~ 2021-07-14T20:15:13,969 Interface/PotentialInterface.cpp:397:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,969 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T20:15:13,970 | ^~~~~~ 2021-07-14T20:15:13,970 Interface/PotentialInterface.cpp:397:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,970 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-14T20:15:13,971 | ^~~~~~~~~ 2021-07-14T20:15:13,971 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterfaceInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:13,971 Interface/PotentialInterface.cpp:500:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,982 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:13,982 | ^~~ 2021-07-14T20:15:13,983 Interface/PotentialInterface.cpp:500:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,983 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:13,983 | ^~~ 2021-07-14T20:15:13,984 Interface/PotentialInterface.cpp:500:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,984 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:13,985 | ^~~ 2021-07-14T20:15:13,985 Interface/PotentialInterface.cpp:500:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,985 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:13,986 | ^~~~ 2021-07-14T20:15:13,986 Interface/PotentialInterface.cpp:500:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,986 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:13,987 | ^~~~ 2021-07-14T20:15:13,987 Interface/PotentialInterface.cpp:500:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,987 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:13,988 | ^~~~~~~~~ 2021-07-14T20:15:13,988 Interface/PotentialInterface.cpp:501:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,988 501 | "q", "kappa", 2021-07-14T20:15:13,989 | ^~~ 2021-07-14T20:15:13,989 Interface/PotentialInterface.cpp:501:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,989 501 | "q", "kappa", 2021-07-14T20:15:13,989 | ^~~~~~~ 2021-07-14T20:15:13,990 Interface/PotentialInterface.cpp:502:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,990 502 | "D", "alpha", "R0", 2021-07-14T20:15:13,990 | ^~~ 2021-07-14T20:15:13,990 Interface/PotentialInterface.cpp:502:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:13,991 502 | "D", "alpha", "R0", 2021-07-14T20:15:13,991 | ^~~~~~~ 2021-07-14T20:15:14,001 Interface/PotentialInterface.cpp:502:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,002 502 | "D", "alpha", "R0", 2021-07-14T20:15:14,002 | ^~~~ 2021-07-14T20:15:14,002 Interface/PotentialInterface.cpp:503:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,003 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T20:15:14,003 | ^~~ 2021-07-14T20:15:14,004 Interface/PotentialInterface.cpp:503:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,004 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T20:15:14,004 | ^~~ 2021-07-14T20:15:14,005 Interface/PotentialInterface.cpp:503:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,005 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T20:15:14,005 | ^~~~ 2021-07-14T20:15:14,005 Interface/PotentialInterface.cpp:503:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,006 503 | "a", "b", "f0", "oxide_cut", 2021-07-14T20:15:14,006 | ^~~~~~~~~~~ 2021-07-14T20:15:14,006 Interface/PotentialInterface.cpp:504:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,007 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T20:15:14,007 | ^~~~~~ 2021-07-14T20:15:14,007 Interface/PotentialInterface.cpp:504:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,007 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T20:15:14,008 | ^~~~~~~ 2021-07-14T20:15:14,008 Interface/PotentialInterface.cpp:504:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,008 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T20:15:14,009 | ^~~~~~~~~~~~~~~ 2021-07-14T20:15:14,009 Interface/PotentialInterface.cpp:504:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,009 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-14T20:15:14,010 | ^~~~~~~~~ 2021-07-14T20:15:14,010 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterface2Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:14,010 Interface/PotentialInterface.cpp:565:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,011 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:14,011 | ^~~ 2021-07-14T20:15:14,011 Interface/PotentialInterface.cpp:565:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,022 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:14,022 | ^~~ 2021-07-14T20:15:14,022 Interface/PotentialInterface.cpp:565:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,023 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:14,023 | ^~~ 2021-07-14T20:15:14,023 Interface/PotentialInterface.cpp:565:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,024 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:14,024 | ^~~~ 2021-07-14T20:15:14,024 Interface/PotentialInterface.cpp:565:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,025 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:14,025 | ^~~~ 2021-07-14T20:15:14,026 Interface/PotentialInterface.cpp:565:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,026 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-14T20:15:14,026 | ^~~~~~~~~ 2021-07-14T20:15:14,027 Interface/PotentialInterface.cpp:566:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,027 566 | "q", "kappa", 2021-07-14T20:15:14,027 | ^~~ 2021-07-14T20:15:14,028 Interface/PotentialInterface.cpp:566:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,028 566 | "q", "kappa", 2021-07-14T20:15:14,028 | ^~~~~~~ 2021-07-14T20:15:14,029 Interface/PotentialInterface.cpp:567:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,029 567 | "D", "alpha", "R0", 2021-07-14T20:15:14,029 | ^~~ 2021-07-14T20:15:14,030 Interface/PotentialInterface.cpp:567:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,030 567 | "D", "alpha", "R0", 2021-07-14T20:15:14,030 | ^~~~~~~ 2021-07-14T20:15:14,031 Interface/PotentialInterface.cpp:567:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,031 567 | "D", "alpha", "R0", 2021-07-14T20:15:14,042 | ^~~~ 2021-07-14T20:15:14,042 Interface/PotentialInterface.cpp:568:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,043 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T20:15:14,043 | ^~~ 2021-07-14T20:15:14,044 Interface/PotentialInterface.cpp:568:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,044 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T20:15:14,044 | ^~~ 2021-07-14T20:15:14,045 Interface/PotentialInterface.cpp:568:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,045 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T20:15:14,046 | ^~~~ 2021-07-14T20:15:14,046 Interface/PotentialInterface.cpp:568:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,046 568 | "a", "b", "f0", "oxide_cut", 2021-07-14T20:15:14,047 | ^~~~~~~~~~~ 2021-07-14T20:15:14,047 Interface/PotentialInterface.cpp:569:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,048 569 | "E", "rho0", "l0", 2021-07-14T20:15:14,048 | ^~~ 2021-07-14T20:15:14,049 Interface/PotentialInterface.cpp:569:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,049 569 | "E", "rho0", "l0", 2021-07-14T20:15:14,049 | ^~~~~~ 2021-07-14T20:15:14,050 Interface/PotentialInterface.cpp:569:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,050 569 | "E", "rho0", "l0", 2021-07-14T20:15:14,051 | ^~~~ 2021-07-14T20:15:14,051 Interface/PotentialInterface.cpp:570:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,062 570 | "B", "C", 2021-07-14T20:15:14,062 | ^~~ 2021-07-14T20:15:14,063 Interface/PotentialInterface.cpp:570:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,063 570 | "B", "C", 2021-07-14T20:15:14,063 | ^~~ 2021-07-14T20:15:14,064 Interface/PotentialInterface.cpp:571:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,064 571 | "interface_cut", "verbose", NULL}; 2021-07-14T20:15:14,065 | ^~~~~~~~~~~~~~~ 2021-07-14T20:15:14,065 Interface/PotentialInterface.cpp:571:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,066 571 | "interface_cut", "verbose", NULL}; 2021-07-14T20:15:14,066 | ^~~~~~~~~ 2021-07-14T20:15:14,067 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MorseInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:14,067 Interface/PotentialInterface.cpp:647:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,068 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T20:15:14,068 | ^~~~~~~~~~ 2021-07-14T20:15:14,068 Interface/PotentialInterface.cpp:647:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,069 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T20:15:14,069 | ^~~~~~~~~ 2021-07-14T20:15:14,069 Interface/PotentialInterface.cpp:647:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,070 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T20:15:14,070 | ^~~~~~~ 2021-07-14T20:15:14,070 Interface/PotentialInterface.cpp:647:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,071 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-14T20:15:14,071 | ^~~~~~ 2021-07-14T20:15:14,071 Interface/PotentialInterface.cpp:648:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,082 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T20:15:14,082 | ^~~~~~ 2021-07-14T20:15:14,083 Interface/PotentialInterface.cpp:648:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,083 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T20:15:14,083 | ^~~~~~~~~~ 2021-07-14T20:15:14,084 Interface/PotentialInterface.cpp:648:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,084 648 | "rCut", "modified", "verbose", NULL}; 2021-07-14T20:15:14,085 | ^~~~~~~~~ 2021-07-14T20:15:14,085 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetPotentialEnergy(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:14,086 Interface/PotentialInterface.cpp:711:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,086 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T20:15:14,087 | ^~~~~~~ 2021-07-14T20:15:14,087 Interface/PotentialInterface.cpp:711:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:14,088 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-14T20:15:14,088 | ^~~~~~~~~~~~~~~~~~ 2021-07-14T20:15:14,088 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetExtra(AsapNS::PyAsap_PotentialObject*, PyObject*)’: 2021-07-14T20:15:14,089 Interface/PotentialInterface.cpp:863:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:15:14,089 863 | for (int i = 0; i < s1.size(); i++) 2021-07-14T20:15:14,090 | ~~^~~~~~~~~~~ 2021-07-14T20:15:21,181 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/PythonConversions.cpp -o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o 2021-07-14T20:15:23,929 In file included from Basics/AsapPython.h:44, 2021-07-14T20:15:23,929 from Interface/PythonConversions.h:30, 2021-07-14T20:15:23,930 from Interface/PythonConversions.cpp:24: 2021-07-14T20:15:23,930 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T20:15:23,931 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:23,931 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T20:15:23,932 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:23,932 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:23,933 | ^~ 2021-07-14T20:15:23,966 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T20:15:23,966 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:23,967 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T20:15:23,967 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:23,967 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:23,968 | ^~ 2021-07-14T20:15:23,978 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T20:15:23,979 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:23,979 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T20:15:23,979 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:23,980 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:23,980 | ^~ 2021-07-14T20:15:23,994 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T20:15:23,995 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:23,995 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T20:15:23,996 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:23,996 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:23,997 | ^~ 2021-07-14T20:15:24,019 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T20:15:24,020 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:24,020 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T20:15:24,021 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:24,021 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:24,022 | ^~ 2021-07-14T20:15:25,918 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/RDFInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o 2021-07-14T20:15:29,334 In file included from Basics/AsapPython.h:44, 2021-07-14T20:15:29,334 from Interface/RDFInterface.h:30, 2021-07-14T20:15:29,334 from Interface/RDFInterface.cpp:27: 2021-07-14T20:15:29,335 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T20:15:29,335 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:29,335 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T20:15:29,335 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:29,336 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:29,336 | ^~ 2021-07-14T20:15:29,347 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T20:15:29,348 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:29,348 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T20:15:29,348 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:29,349 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:29,349 | ^~ 2021-07-14T20:15:29,358 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T20:15:29,358 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:29,358 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T20:15:29,358 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:29,359 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:29,359 | ^~ 2021-07-14T20:15:29,372 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T20:15:29,373 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:29,373 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T20:15:29,373 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:29,374 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:29,374 | ^~ 2021-07-14T20:15:29,387 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T20:15:29,387 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:29,387 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T20:15:29,388 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:29,388 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:29,388 | ^~ 2021-07-14T20:15:34,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Interface/ToolsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o 2021-07-14T20:15:38,104 In file included from Basics/AsapPython.h:44, 2021-07-14T20:15:38,104 from Interface/ToolsInterface.cpp:27: 2021-07-14T20:15:38,104 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T20:15:38,105 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:38,105 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T20:15:38,105 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:38,106 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:38,106 | ^~ 2021-07-14T20:15:38,118 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T20:15:38,119 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:38,119 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T20:15:38,120 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:38,120 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:38,120 | ^~ 2021-07-14T20:15:38,150 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T20:15:38,150 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:38,150 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T20:15:38,151 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:38,151 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:38,151 | ^~ 2021-07-14T20:15:38,164 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T20:15:38,165 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:38,165 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T20:15:38,166 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:38,166 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:38,166 | ^~ 2021-07-14T20:15:38,179 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T20:15:38,180 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:15:38,180 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T20:15:38,181 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:15:38,181 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:15:38,181 | ^~ 2021-07-14T20:15:38,625 Interface/ToolsInterface.cpp: In function ‘int AsapNS::PyAsap_FullCNAInit(AsapNS::PyAsap_FullCNAObject*, PyObject*, PyObject*)’: 2021-07-14T20:15:38,625 Interface/ToolsInterface.cpp:92:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:38,626 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T20:15:38,626 | ^~~~~~~ 2021-07-14T20:15:38,626 Interface/ToolsInterface.cpp:92:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:15:38,627 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-14T20:15:38,627 | ^~~~~~~~ 2021-07-14T20:15:40,611 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/alloy_types.cpp -o build/temp.linux-armv7l-3.9/PTM/alloy_types.o 2021-07-14T20:15:44,038 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/canonical.cpp -o build/temp.linux-armv7l-3.9/PTM/canonical.o 2021-07-14T20:15:47,455 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/convex_hull_incremental.cpp -o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o 2021-07-14T20:15:51,138 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/deformation_gradient.cpp -o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o 2021-07-14T20:15:54,862 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/graph_data.cpp -o build/temp.linux-armv7l-3.9/PTM/graph_data.o 2021-07-14T20:15:57,521 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/index_ptm.cpp -o build/temp.linux-armv7l-3.9/PTM/index_ptm.o 2021-07-14T20:16:01,925 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/initialize_data.cpp -o build/temp.linux-armv7l-3.9/PTM/initialize_data.o 2021-07-14T20:16:04,886 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/neighbour_ordering.cpp -o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o 2021-07-14T20:16:07,771 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/normalize_vertices.cpp -o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o 2021-07-14T20:16:08,547 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/polar.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o 2021-07-14T20:16:10,336 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/qcprot/quat.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o 2021-07-14T20:16:11,749 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c PTM/voronoi/cell.cpp -o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o 2021-07-14T20:16:20,270 In file included from /usr/include/c++/10/vector:72, 2021-07-14T20:16:20,271 from PTM/voronoi/cell.hpp:15, 2021-07-14T20:16:20,271 from PTM/voronoi/cell.cpp:16: 2021-07-14T20:16:20,272 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-14T20:16:20,272 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-14T20:16:20,272 426 | vector<_Tp, _Alloc>:: 2021-07-14T20:16:20,273 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:16:20,355 /usr/include/c++/10/bits/vector.tcc: In member function ‘void voro::voronoicell_base::face_areas(std::vector&)’: 2021-07-14T20:16:20,355 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:16:20,355 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-14T20:16:20,356 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:16:20,780 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT.o 2021-07-14T20:16:24,972 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::SetAtoms(PyObject*, AsapNS::Atoms*)’: 2021-07-14T20:16:24,973 Potentials/EMT.cpp:193:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:24,973 193 | for (int i = 0; i < parameters.size(); i++) 2021-07-14T20:16:24,973 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:16:25,015 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::Allocate()’: 2021-07-14T20:16:25,016 Potentials/EMT.cpp:242:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:25,016 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T20:16:25,017 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-14T20:16:25,017 Potentials/EMT.cpp:242:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:25,018 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-14T20:16:25,018 | ~~~~~~~^~~~~~~~~~~~~ 2021-07-14T20:16:25,019 Potentials/EMT.cpp:251:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:16:25,019 251 | if (force.capacity() < nSize) 2021-07-14T20:16:25,020 | ~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T20:16:25,021 Potentials/EMT.cpp:262:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:16:25,021 262 | if (Eas.capacity() < nAtoms) 2021-07-14T20:16:25,022 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:16:25,025 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::AllocateStress()’: 2021-07-14T20:16:25,025 Potentials/EMT.cpp:302:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:16:25,025 302 | if (ghostatoms && (virials.capacity() < nSize)) 2021-07-14T20:16:25,026 | ~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T20:16:25,061 In file included from Basics/AsapPython.h:44, 2021-07-14T20:16:25,062 from Potentials/EMT.h:34, 2021-07-14T20:16:25,062 from Potentials/EMT.cpp:34: 2021-07-14T20:16:25,062 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::InitParameters()’: 2021-07-14T20:16:25,063 Potentials/EMT.cpp:324:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:25,063 324 | ASSERT(nelements == elements_set.size()); 2021-07-14T20:16:25,063 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:16:25,063 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:25,063 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:25,064 | ^~ 2021-07-14T20:16:25,071 Potentials/EMT.cpp: In member function ‘virtual const std::vector& AsapNS::EMT::GetPotentialEnergies(PyObject*)’: 2021-07-14T20:16:25,071 Potentials/EMT.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:16:25,071 538 | ASSERT(Epot.size() == nAtoms); 2021-07-14T20:16:25,072 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T20:16:25,072 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:25,072 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:25,072 | ^~ 2021-07-14T20:16:25,188 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T20:16:25,188 Potentials/EMT.cpp:1259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:25,189 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T20:16:25,189 | ~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T20:16:25,190 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:25,190 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:25,191 | ^~ 2021-07-14T20:16:25,191 Potentials/EMT.cpp:1259:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:25,192 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-14T20:16:25,192 | ~~~~~~~^~~~~~~~~~~~ 2021-07-14T20:16:25,192 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:25,193 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:25,193 | ^~ 2021-07-14T20:16:25,194 Potentials/EMT.cpp:1260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:25,194 1260 | nSize == dEds.size()); 2021-07-14T20:16:25,194 | ~~~~~~^~~~~~~~~~~~~~ 2021-07-14T20:16:25,195 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:25,195 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:25,196 | ^~ 2021-07-14T20:16:25,237 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergies()’: 2021-07-14T20:16:25,238 Potentials/EMT.cpp:1425:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:16:25,238 1425 | ASSERT(virials.size() == nSize); 2021-07-14T20:16:25,239 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:16:25,239 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:25,239 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:25,240 | ^~ 2021-07-14T20:16:25,273 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergiesSingle()’: 2021-07-14T20:16:25,273 Potentials/EMT.cpp:1544:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:16:25,273 1544 | ASSERT(this->force.size() >= nSize); 2021-07-14T20:16:25,274 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:16:25,274 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:25,274 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:25,274 | ^~ 2021-07-14T20:16:25,275 Potentials/EMT.cpp:1547:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:16:25,275 1547 | ASSERT(virials.size() == nSize); 2021-07-14T20:16:25,275 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:16:25,275 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:25,276 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:25,276 | ^~ 2021-07-14T20:16:39,564 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMT2013.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o 2021-07-14T20:16:44,241 In file included from Basics/AsapPython.h:44, 2021-07-14T20:16:44,242 from Potentials/EMT.h:34, 2021-07-14T20:16:44,242 from Potentials/EMT2013.h:13, 2021-07-14T20:16:44,242 from Potentials/EMT2013.cpp:8: 2021-07-14T20:16:44,243 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::InitParameters()’: 2021-07-14T20:16:44,243 Potentials/EMT2013.cpp:105:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:44,243 105 | ASSERT(nelements == elements_set.size()); 2021-07-14T20:16:44,243 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:16:44,244 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:44,244 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:44,244 | ^~ 2021-07-14T20:16:44,356 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::CalculateEnergiesAfterSigmas(bool)’: 2021-07-14T20:16:44,357 Potentials/EMT2013.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:44,357 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T20:16:44,357 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:16:44,358 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:44,358 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:44,358 | ^~ 2021-07-14T20:16:44,359 Potentials/EMT2013.cpp:568:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:44,359 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-14T20:16:44,359 | ~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T20:16:44,359 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:44,360 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:44,360 | ^~ 2021-07-14T20:16:44,360 Potentials/EMT2013.cpp:569:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:16:44,360 569 | nSize == this->dEds.size()); 2021-07-14T20:16:44,361 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:16:44,361 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:16:44,361 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:16:44,362 | ^~ 2021-07-14T20:16:51,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o 2021-07-14T20:16:57,634 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o 2021-07-14T20:17:04,152 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o 2021-07-14T20:17:08,735 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/LennardJones.cpp -o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o 2021-07-14T20:17:12,819 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetVirials(PyObject*)’: 2021-07-14T20:17:12,820 Potentials/LennardJones.cpp:374:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:17:12,820 374 | if (nAtoms != virials.size()) 2021-07-14T20:17:12,820 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T20:17:12,830 In file included from Basics/AsapPython.h:44, 2021-07-14T20:17:12,830 from Potentials/LennardJones.cpp:43: 2021-07-14T20:17:12,831 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetForces(PyObject*)’: 2021-07-14T20:17:12,831 Potentials/LennardJones.cpp:484:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:17:12,831 484 | ASSERT(forces.size() == nSize); 2021-07-14T20:17:12,832 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:17:12,832 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:17:12,832 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:17:12,832 | ^~ 2021-07-14T20:17:12,847 Potentials/LennardJones.cpp: In member function ‘double AsapNS::LennardJones::CalculateEnergyAndEnergies()’: 2021-07-14T20:17:12,848 Potentials/LennardJones.cpp:580:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:17:12,848 580 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T20:17:12,848 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T20:17:12,849 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:17:12,849 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:17:12,849 | ^~ 2021-07-14T20:17:19,023 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o 2021-07-14T20:17:24,152 In file included from Basics/AsapPython.h:44, 2021-07-14T20:17:24,153 from Potentials/MetalOxideInterface.cpp:29: 2021-07-14T20:17:24,153 Potentials/MetalOxideInterface.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface::GetForces(PyObject*)’: 2021-07-14T20:17:24,153 Potentials/MetalOxideInterface.cpp:316:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:17:24,154 316 | ASSERT(forces.size() == nSize); 2021-07-14T20:17:24,154 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:17:24,154 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:17:24,155 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:17:24,155 | ^~ 2021-07-14T20:17:24,186 Potentials/MetalOxideInterface.cpp: In member function ‘double AsapNS::MetalOxideInterface::CalculateEnergyAndEnergies()’: 2021-07-14T20:17:24,186 Potentials/MetalOxideInterface.cpp:571:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:17:24,186 571 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T20:17:24,187 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T20:17:24,187 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:17:24,187 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:17:24,187 | ^~ 2021-07-14T20:17:32,230 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MetalOxideInterface2.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o 2021-07-14T20:17:36,231 In file included from Basics/AsapPython.h:44, 2021-07-14T20:17:36,232 from Potentials/MetalOxideInterface2.cpp:43: 2021-07-14T20:17:36,232 Potentials/MetalOxideInterface2.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface2::GetForces(PyObject*)’: 2021-07-14T20:17:36,233 Potentials/MetalOxideInterface2.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:17:36,233 330 | ASSERT(forces.size() == nSize); 2021-07-14T20:17:36,234 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:17:36,234 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:17:36,234 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:17:36,235 | ^~ 2021-07-14T20:17:36,261 Potentials/MetalOxideInterface2.cpp: In member function ‘double AsapNS::MetalOxideInterface2::CalculateEnergyAndEnergies()’: 2021-07-14T20:17:36,262 Potentials/MetalOxideInterface2.cpp:552:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:17:36,262 552 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T20:17:36,263 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T20:17:36,263 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:17:36,264 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:17:36,264 | ^~ 2021-07-14T20:17:44,327 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/MonteCarloEMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o 2021-07-14T20:17:53,234 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Morse.cpp -o build/temp.linux-armv7l-3.9/Potentials/Morse.o 2021-07-14T20:17:57,288 In file included from Basics/AsapPython.h:44, 2021-07-14T20:17:57,288 from Potentials/Morse.cpp:43: 2021-07-14T20:17:57,289 Potentials/Morse.cpp: In member function ‘double AsapNS::Morse::CalculateEnergyAndEnergies()’: 2021-07-14T20:17:57,289 Potentials/Morse.cpp:472:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:17:57,290 472 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T20:17:57,290 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T20:17:57,291 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:17:57,291 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:17:57,292 | ^~ 2021-07-14T20:18:02,454 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T20:18:02,454 from Potentials/Morse.cpp:54: 2021-07-14T20:18:02,454 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T20:18:02,455 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,455 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-14T20:18:02,455 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,455 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,456 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,456 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,495 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-14T20:18:02,495 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,495 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-14T20:18:02,496 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,547 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T20:18:02,548 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,548 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-14T20:18:02,548 | ^~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,549 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,630 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-14T20:18:02,630 from /usr/include/c++/10/algorithm:62, 2021-07-14T20:18:02,631 from Potentials/Morse.cpp:54: 2021-07-14T20:18:02,631 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T20:18:02,631 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,632 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-14T20:18:02,632 | ^~~~~~~~~~~~~ 2021-07-14T20:18:02,745 In file included from /usr/include/c++/10/algorithm:62, 2021-07-14T20:18:02,746 from Potentials/Morse.cpp:54: 2021-07-14T20:18:02,746 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T20:18:02,746 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,747 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-14T20:18:02,747 | ^~~~~~~~~~~~~ 2021-07-14T20:18:02,748 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,749 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,750 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,867 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-14T20:18:02,867 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,867 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-14T20:18:02,868 | ^~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,868 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,870 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,874 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,874 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-14T20:18:02,874 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,875 1925 | __comp); 2021-07-14T20:18:02,875 | ~~~~~~~ 2021-07-14T20:18:02,876 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,878 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,878 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-14T20:18:02,879 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,881 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,882 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-14T20:18:02,882 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,954 /usr/include/c++/10/bits/stl_algo.h: In member function ‘double AsapNS::Morse::Add(std::vector&)’: 2021-07-14T20:18:02,954 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,955 1974 | std::__introsort_loop(__first, __last, 2021-07-14T20:18:02,955 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,955 1975 | std::__lg(__last - __first) * 2, 2021-07-14T20:18:02,956 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,956 1976 | __comp); 2021-07-14T20:18:02,956 | ~~~~~~~ 2021-07-14T20:18:02,957 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,957 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-14T20:18:02,958 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:02,959 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-14T20:18:02,959 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-14T20:18:02,960 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:03,769 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/Potential.cpp -o build/temp.linux-armv7l-3.9/Potentials/Potential.o 2021-07-14T20:18:07,498 Potentials/Potential.cpp: In member function ‘virtual AsapNS::SymTensor AsapNS::Potential::GetVirial(PyObject*)’: 2021-07-14T20:18:07,499 Potentials/Potential.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:18:07,499 52 | for (int i = 0; i < virials.size(); i++) 2021-07-14T20:18:07,499 | ~~^~~~~~~~~~~~~~~~ 2021-07-14T20:18:08,508 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RGL.cpp -o build/temp.linux-armv7l-3.9/Potentials/RGL.o 2021-07-14T20:18:13,614 Potentials/RGL.cpp: In member function ‘void AsapNS::RGL::Allocate()’: 2021-07-14T20:18:13,614 Potentials/RGL.cpp:127:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:18:13,615 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T20:18:13,615 | ~~~~~~^~~~~~~~~~~~~~~~ 2021-07-14T20:18:13,632 Potentials/RGL.cpp:127:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:18:13,632 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-14T20:18:13,633 | ~~~~~~~^~~~~~~~~~~~~~ 2021-07-14T20:18:20,690 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o 2021-07-14T20:18:24,761 In file included from Basics/AsapPython.h:44, 2021-07-14T20:18:24,762 from Potentials/RahmanStillingerLemberg.cpp:43: 2021-07-14T20:18:24,763 Potentials/RahmanStillingerLemberg.cpp: In member function ‘virtual const std::vector& AsapNS::RahmanStillingerLemberg::GetForces(PyObject*)’: 2021-07-14T20:18:24,763 Potentials/RahmanStillingerLemberg.cpp:355:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:18:24,764 355 | ASSERT(forces.size() == nSize); 2021-07-14T20:18:24,764 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-14T20:18:24,764 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:18:24,765 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:18:24,765 | ^~ 2021-07-14T20:18:24,785 Potentials/RahmanStillingerLemberg.cpp: In member function ‘double AsapNS::RahmanStillingerLemberg::CalculateEnergyAndEnergies()’: 2021-07-14T20:18:24,786 Potentials/RahmanStillingerLemberg.cpp:452:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:18:24,786 452 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-14T20:18:24,787 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-14T20:18:24,787 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:18:24,788 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:18:24,788 | ^~ 2021-07-14T20:18:31,321 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CNA.cpp -o build/temp.linux-armv7l-3.9/Tools/CNA.o 2021-07-14T20:18:35,367 Tools/CNA.cpp: In function ‘void AsapNS::CNA(PyObject*, double, std::vector&)’: 2021-07-14T20:18:35,368 Tools/CNA.cpp:54:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T20:18:35,368 54 | for (unsigned int a2 = 0; a2 < nTotal; a2++) 2021-07-14T20:18:35,369 | ~~~^~~~~~~~ 2021-07-14T20:18:35,375 Tools/CNA.cpp:62:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:18:35,375 62 | if (a1 < a2) 2021-07-14T20:18:35,375 | ~~~^~~~ 2021-07-14T20:18:35,378 Tools/CNA.cpp:82:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-14T20:18:35,378 82 | for (unsigned int j1 = 0; j1 < j2; j1++) 2021-07-14T20:18:35,378 | ~~~^~~~ 2021-07-14T20:18:37,768 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/CoordinationNumbers.cpp -o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o 2021-07-14T20:18:43,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/FullCNA.cpp -o build/temp.linux-armv7l-3.9/Tools/FullCNA.o 2021-07-14T20:18:53,803 In file included from /usr/include/c++/10/map:60, 2021-07-14T20:18:53,803 from Tools/FullCNA.h:35, 2021-07-14T20:18:53,804 from Tools/FullCNA.cpp:24: 2021-07-14T20:18:53,804 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T20:18:53,804 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T20:18:53,805 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T20:18:53,805 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:54,559 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-14T20:18:54,559 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T20:18:54,559 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-14T20:18:54,560 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:54,625 In file included from /usr/include/c++/10/map:61, 2021-07-14T20:18:54,626 from Tools/FullCNA.h:35, 2021-07-14T20:18:54,626 from Tools/FullCNA.cpp:24: 2021-07-14T20:18:54,627 /usr/include/c++/10/bits/stl_map.h: In member function ‘void AsapNS::FullCNA::SetMultipleCutoffs(std::map, double>&)’: 2021-07-14T20:18:54,627 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T20:18:54,628 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T20:18:54,628 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:54,629 502 | std::tuple(__k), 2021-07-14T20:18:54,629 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:54,630 503 | std::tuple<>()); 2021-07-14T20:18:54,630 | ~~~~~~~~~~~~~~~ 2021-07-14T20:18:54,630 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-14T20:18:54,631 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-14T20:18:54,632 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:54,632 502 | std::tuple(__k), 2021-07-14T20:18:54,633 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:18:54,633 503 | std::tuple<>()); 2021-07-14T20:18:54,633 | ~~~~~~~~~~~~~~~ 2021-07-14T20:18:56,462 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/GetNeighborList.cpp -o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o 2021-07-14T20:19:01,811 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/RawRadialDistribution.cpp -o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o 2021-07-14T20:19:04,925 In file included from Basics/AsapPython.h:44, 2021-07-14T20:19:04,925 from Tools/RawRadialDistribution.cpp:29: 2021-07-14T20:19:04,926 Tools/RawRadialDistribution.cpp: In function ‘void AsapNS::RawRadialDistribution(PyObject*, int, const int*, double, int, AsapNS::RDFtype&, AsapNS::RDFcountType&, long int*)’: 2021-07-14T20:19:04,926 Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integer expressions of different signedness: ‘std::vector, long int*> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:04,927 55 | ASSERT(result.size() == nGroups); 2021-07-14T20:19:04,927 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T20:19:04,927 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:04,928 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:04,928 | ^~ 2021-07-14T20:19:04,939 Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:04,940 56 | ASSERT(counts.size() == nGroups); 2021-07-14T20:19:04,941 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-14T20:19:04,941 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:04,942 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:04,942 | ^~ 2021-07-14T20:19:07,616 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o 2021-07-14T20:19:13,371 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c VersionInfo_autogen/version_piwheels41_s.cpp -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels41_s.o 2021-07-14T20:19:13,962 VersionInfo_autogen/version_piwheels41_s.cpp:15:62: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2021-07-14T20:19:13,963 15 | return ("ASAP version 3.11.10 serial, compiled " __DATE__ " " __TIME__ " on piwheels41 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T20:19:13,964 | ^~~~~~~~ 2021-07-14T20:19:13,965 VersionInfo_autogen/version_piwheels41_s.cpp:15:75: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2021-07-14T20:19:13,966 15 | return ("ASAP version 3.11.10 serial, compiled " __DATE__ " " __TIME__ " on piwheels41 using 'distutils with arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-14T20:19:13,966 | ^~~~~~~~ 2021-07-14T20:19:15,800 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Interface/AsapSerial.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels41_s.o -lm -o build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so 2021-07-14T20:19:18,054 *** Building the asap-python executable *** 2021-07-14T20:19:18,058 *** COMPILING: ['ParallelInterface/mpi.c'] 2021-07-14T20:19:18,058 mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o -c ParallelInterface/mpi.c 2021-07-14T20:19:21,252 *** COMPILING: ['Parallel/ParallelAtoms.cpp', 'Parallel/ParallelPotential.cpp', 'Parallel/RegularGridDecomposition.cpp', 'ParallelInterface/AsapParallel.cpp', 'ParallelInterface/ParallelAtomsInterface.cpp', 'ParallelInterface/ParallelNeighborListInterface.cpp', 'ParallelInterface/ParallelPotentialInterface.cpp', 'VersionInfo_autogen/version_piwheels41_p.cpp'] 2021-07-14T20:19:21,252 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o -c Parallel/ParallelAtoms.cpp 2021-07-14T20:19:25,321 In file included from Basics/AsapPython.h:44, 2021-07-14T20:19:25,321 from Parallel/ParallelAtoms.h:28, 2021-07-14T20:19:25,322 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T20:19:25,322 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T20:19:25,322 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:25,323 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T20:19:25,323 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,323 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:25,324 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:25,324 | ^~ 2021-07-14T20:19:25,327 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T20:19:25,327 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:25,328 301 | ASSERT(sendbuf.size() == size); 2021-07-14T20:19:25,328 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T20:19:25,328 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:25,329 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:25,329 | ^~ 2021-07-14T20:19:25,419 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::Migrate(bool)’: 2021-07-14T20:19:25,419 Parallel/ParallelAtoms.cpp:248:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:25,419 248 | (sendlist->size() < nProcessors)); 2021-07-14T20:19:25,420 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2021-07-14T20:19:25,420 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:25,420 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:25,420 | ^~ 2021-07-14T20:19:25,551 Parallel/ParallelAtoms.cpp:325:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,551 325 | for (int j = 0; j < arrays.size(); j++) 2021-07-14T20:19:25,552 | ~~^~~~~~~~~~~~~~~ 2021-07-14T20:19:25,559 Parallel/ParallelAtoms.cpp:345:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,559 345 | for (int j = 0; j < new_arrays.size(); j++) 2021-07-14T20:19:25,560 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,564 In file included from Basics/AsapPython.h:44, 2021-07-14T20:19:25,564 from Parallel/ParallelAtoms.h:28, 2021-07-14T20:19:25,565 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T20:19:25,565 Parallel/ParallelAtoms.cpp:352:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,566 352 | ASSERT(b - b0 == receiveBuffer.size()); 2021-07-14T20:19:25,566 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,567 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:25,567 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:25,567 | ^~ 2021-07-14T20:19:25,763 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::UpdateGhostData()’: 2021-07-14T20:19:25,763 Parallel/ParallelAtoms.cpp:616:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,764 616 | for (int i = 0; i < array_names.size(); i++) 2021-07-14T20:19:25,764 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,766 Parallel/ParallelAtoms.cpp:637:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,767 637 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T20:19:25,767 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,768 Parallel/ParallelAtoms.cpp:644:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,768 644 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T20:19:25,768 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,788 In file included from Basics/AsapPython.h:44, 2021-07-14T20:19:25,788 from Parallel/ParallelAtoms.h:28, 2021-07-14T20:19:25,789 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T20:19:25,789 Parallel/ParallelAtoms.cpp:656:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,790 656 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); 2021-07-14T20:19:25,790 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,791 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:25,791 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:25,791 | ^~ 2021-07-14T20:19:25,792 Parallel/ParallelAtoms.cpp:666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,792 666 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-14T20:19:25,793 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,810 Parallel/ParallelAtoms.cpp: In member function ‘virtual void AsapNS::ParallelAtoms::CommunicateData(double*, int)’: 2021-07-14T20:19:25,810 Parallel/ParallelAtoms.cpp:730:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,811 730 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-14T20:19:25,811 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,925 In file included from Basics/AsapPython.h:44, 2021-07-14T20:19:25,925 from Parallel/ParallelAtoms.h:28, 2021-07-14T20:19:25,926 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T20:19:25,926 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T20:19:25,927 Parallel/ParallelAtoms.cpp:1117:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:25,927 1117 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T20:19:25,928 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,928 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:25,929 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:25,929 | ^~ 2021-07-14T20:19:25,930 Parallel/ParallelAtoms.cpp:1123:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,930 1123 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T20:19:25,930 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,964 In file included from Basics/AsapPython.h:44, 2021-07-14T20:19:25,964 from Parallel/ParallelAtoms.h:28, 2021-07-14T20:19:25,965 from Parallel/ParallelAtoms.cpp:24: 2021-07-14T20:19:25,965 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-14T20:19:25,965 Parallel/ParallelAtoms.cpp:1150:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:25,966 1150 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-14T20:19:25,966 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:25,967 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:25,967 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:25,967 | ^~ 2021-07-14T20:19:25,968 Parallel/ParallelAtoms.cpp:1156:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T20:19:25,968 1156 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-14T20:19:25,969 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:38,322 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o -c Parallel/ParallelPotential.cpp 2021-07-14T20:19:42,247 In file included from Basics/AsapPython.h:44, 2021-07-14T20:19:42,248 from Parallel/ParallelPotential.h:28, 2021-07-14T20:19:42,248 from Parallel/ParallelPotential.cpp:24: 2021-07-14T20:19:42,249 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T20:19:42,249 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:42,250 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T20:19:42,250 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:42,251 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:42,251 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:42,252 | ^~ 2021-07-14T20:19:42,262 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T20:19:42,262 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:42,263 301 | ASSERT(sendbuf.size() == size); 2021-07-14T20:19:42,263 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T20:19:42,263 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:42,264 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:42,264 | ^~ 2021-07-14T20:19:46,635 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o -c Parallel/RegularGridDecomposition.cpp 2021-07-14T20:19:49,852 In file included from Basics/AsapPython.h:44, 2021-07-14T20:19:49,853 from Parallel/RegularGridDecomposition.cpp:24: 2021-07-14T20:19:49,853 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-14T20:19:49,854 Parallel/AsapMPI.h:286:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:49,854 286 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-14T20:19:49,855 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T20:19:49,855 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:49,856 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:49,856 | ^~ 2021-07-14T20:19:49,856 Parallel/AsapMPI.h: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-14T20:19:49,857 Parallel/AsapMPI.h:301:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-14T20:19:49,857 301 | ASSERT(sendbuf.size() == size); 2021-07-14T20:19:49,858 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-14T20:19:49,858 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:19:49,859 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:19:49,859 | ^~ 2021-07-14T20:19:56,364 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o -c ParallelInterface/AsapParallel.cpp 2021-07-14T20:20:00,897 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o -c ParallelInterface/ParallelAtomsInterface.cpp 2021-07-14T20:20:04,678 ParallelInterface/ParallelAtomsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DistributeAtoms(PyObject*, PyObject*, PyObject*)’: 2021-07-14T20:20:04,679 ParallelInterface/ParallelAtomsInterface.cpp:39:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:20:04,679 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; 2021-07-14T20:20:04,680 | ^~~~~~~ 2021-07-14T20:20:04,680 ParallelInterface/ParallelAtomsInterface.cpp:39:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:20:04,681 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; 2021-07-14T20:20:04,682 | ^~~~~~~~~ 2021-07-14T20:20:05,707 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o -c ParallelInterface/ParallelNeighborListInterface.cpp 2021-07-14T20:20:08,576 In file included from Basics/AsapPython.h:44, 2021-07-14T20:20:08,577 from ParallelInterface/ParallelNeighborListInterface.cpp:2: 2021-07-14T20:20:08,578 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-14T20:20:08,578 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:20:08,579 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-14T20:20:08,579 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:20:08,580 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:20:08,580 | ^~ 2021-07-14T20:20:08,598 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-14T20:20:08,598 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:20:08,599 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-14T20:20:08,599 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:20:08,599 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:20:08,600 | ^~ 2021-07-14T20:20:08,614 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-14T20:20:08,615 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:20:08,615 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-14T20:20:08,615 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:20:08,616 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:20:08,616 | ^~ 2021-07-14T20:20:08,631 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-14T20:20:08,631 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:20:08,632 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-14T20:20:08,632 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:20:08,632 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:20:08,633 | ^~ 2021-07-14T20:20:08,647 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-14T20:20:08,647 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-14T20:20:08,648 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-14T20:20:08,648 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-14T20:20:08,649 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-14T20:20:08,649 | ^~ 2021-07-14T20:20:09,222 ParallelInterface/ParallelNeighborListInterface.cpp: In function ‘PyObject* PyAsap_NewNeighborCellLocator_Parallel(PyObject*, PyObject*, PyObject*)’: 2021-07-14T20:20:09,222 ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:20:09,223 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T20:20:09,223 | ^~~~~~ 2021-07-14T20:20:09,223 ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:20:09,224 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T20:20:09,224 | ^~~~~~~ 2021-07-14T20:20:09,225 ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:20:09,225 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-14T20:20:09,225 | ^~~~~~~~~~~~~ 2021-07-14T20:20:09,905 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o -c ParallelInterface/ParallelPotentialInterface.cpp 2021-07-14T20:20:12,305 ParallelInterface/ParallelPotentialInterface.cpp: In function ‘int PyAsap_ParPotInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-14T20:20:12,305 ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:20:12,306 48 | static char *kwlist[] = {"potential", "verbose", NULL}; 2021-07-14T20:20:12,306 | ^~~~~~~~~~~ 2021-07-14T20:20:12,307 ParallelInterface/ParallelPotentialInterface.cpp:48:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-14T20:20:12,307 48 | static char *kwlist[] = {"potential", "verbose", NULL}; 2021-07-14T20:20:12,308 | ^~~~~~~~~ 2021-07-14T20:20:12,969 mpicxx -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -I/usr/include/python3.9 -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels41_p.o -c VersionInfo_autogen/version_piwheels41_p.cpp 2021-07-14T20:20:14,420 mpicxx -o build/bin.linux-armv7l-3.9/asap-python build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/ParallelInterface/mpi.o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels41_p.o -L/usr/lib/python3.9/config-3.9-arm-linux-gnueabihf -lm -lpython3.9 -lm -lpython3.9 -lcrypt -lpthread -ldl -lutil -lm -lm -Wl,-z,relro -g -fwrapv -O2 -lexpat -L/usr/lib -lz -lexpat -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-14T20:20:17,966 running build_scripts 2021-07-14T20:20:17,966 Protecting build/bin.linux-armv7l-3.9/asap-python from ajustment 2021-07-14T20:20:17,968 creating build/scripts-3.9 2021-07-14T20:20:17,970 copying and adjusting scripts/asap-qsub -> build/scripts-3.9 2021-07-14T20:20:17,975 copying and adjusting scripts/asap-sbatch -> build/scripts-3.9 2021-07-14T20:20:17,977 changing mode of build/scripts-3.9/asap-qsub from 644 to 755 2021-07-14T20:20:17,979 changing mode of build/scripts-3.9/asap-sbatch from 644 to 755 2021-07-14T20:20:17,981 copying build/bin.linux-armv7l-3.9/asap-python -> build/scripts-3.9 2021-07-14T20:20:18,264 installing to build/bdist.linux-armv7l/wheel 2021-07-14T20:20:18,264 running install 2021-07-14T20:20:18,266 running install_lib 2021-07-14T20:20:18,298 creating build/bdist.linux-armv7l 2021-07-14T20:20:18,298 creating build/bdist.linux-armv7l/wheel 2021-07-14T20:20:18,300 copying build/lib.linux-armv7l-3.9/_asap_p3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-14T20:20:18,694 creating build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:18,695 copying build/lib.linux-armv7l-3.9/asap3/version.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:18,698 creating build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T20:20:18,699 copying build/lib.linux-armv7l-3.9/asap3/io/bundletrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T20:20:18,702 copying build/lib.linux-armv7l-3.9/asap3/io/cpu_setup.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T20:20:18,705 copying build/lib.linux-armv7l-3.9/asap3/io/ReadOldFiles.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T20:20:18,708 copying build/lib.linux-armv7l-3.9/asap3/io/trajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T20:20:18,711 copying build/lib.linux-armv7l-3.9/asap3/io/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-14T20:20:18,715 creating build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,716 copying build/lib.linux-armv7l-3.9/asap3/md/velocitydistribution.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,719 copying build/lib.linux-armv7l-3.9/asap3/md/verlet_fast.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,722 copying build/lib.linux-armv7l-3.9/asap3/md/npt.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,725 copying build/lib.linux-armv7l-3.9/asap3/md/nptberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,728 copying build/lib.linux-armv7l-3.9/asap3/md/verlet.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,731 copying build/lib.linux-armv7l-3.9/asap3/md/langevin.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,734 copying build/lib.linux-armv7l-3.9/asap3/md/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,737 copying build/lib.linux-armv7l-3.9/asap3/md/md.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,740 copying build/lib.linux-armv7l-3.9/asap3/md/nvtberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-14T20:20:18,743 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,745 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/clusteratom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,748 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/langmuirExpression.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,752 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T20:20:18,753 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T20:20:18,756 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T20:20:18,759 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T20:20:18,762 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/au.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-14T20:20:18,765 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/resizecluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,768 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/AdsCalc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,771 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,774 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/mc_result.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,778 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/cluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,783 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T20:20:18,784 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/surface.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T20:20:18,789 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T20:20:18,792 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/atom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-14T20:20:18,797 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/atommontecarlodata.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,801 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/Logger.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-14T20:20:18,806 creating build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,809 creating build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,812 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/EMT.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,816 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Search.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,819 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/GetParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,822 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,826 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Quantities.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,831 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/RGL.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,834 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Performance.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,838 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,841 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Optimization.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,846 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Sampling.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,849 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-14T20:20:18,855 copying build/lib.linux-armv7l-3.9/asap3/Tools/AsapFileToTrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,859 copying build/lib.linux-armv7l-3.9/asap3/Tools/Timing.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,863 copying build/lib.linux-armv7l-3.9/asap3/Tools/ElasticConstants.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,868 copying build/lib.linux-armv7l-3.9/asap3/Tools/EMT_two_atom_test.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,872 copying build/lib.linux-armv7l-3.9/asap3/Tools/niflheim.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,876 copying build/lib.linux-armv7l-3.9/asap3/Tools/SurfaceEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,880 copying build/lib.linux-armv7l-3.9/asap3/Tools/OptimizationDatabase.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,884 copying build/lib.linux-armv7l-3.9/asap3/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,888 copying build/lib.linux-armv7l-3.9/asap3/Tools/AtomicEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,891 copying build/lib.linux-armv7l-3.9/asap3/Tools/MaterialProperties.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-14T20:20:18,899 copying build/lib.linux-armv7l-3.9/asap3/timing.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:18,903 creating build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T20:20:18,906 creating build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,908 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/grain_structures.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,913 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/plane_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,916 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/helpers.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,921 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,927 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,931 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/energy.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,934 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,938 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/quat_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,942 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/dislocated.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-14T20:20:18,946 copying build/lib.linux-armv7l-3.9/asap3/setup/displacementfield.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T20:20:18,951 copying build/lib.linux-armv7l-3.9/asap3/setup/dislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T20:20:18,956 copying build/lib.linux-armv7l-3.9/asap3/setup/multidislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T20:20:18,960 copying build/lib.linux-armv7l-3.9/asap3/setup/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T20:20:18,964 copying build/lib.linux-armv7l-3.9/asap3/setup/VelocityDistribution.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-14T20:20:18,967 copying build/lib.linux-armv7l-3.9/asap3/fixepydoc.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:18,971 copying build/lib.linux-armv7l-3.9/asap3/GuptaParameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:18,979 copying build/lib.linux-armv7l-3.9/asap3/EMT2013Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:18,985 copying build/lib.linux-armv7l-3.9/asap3/mpi.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:18,989 copying build/lib.linux-armv7l-3.9/asap3/testtools.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:18,995 copying build/lib.linux-armv7l-3.9/asap3/memory.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:19,000 creating build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,006 copying build/lib.linux-armv7l-3.9/asap3/analysis/particle.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,010 copying build/lib.linux-armv7l-3.9/asap3/analysis/cutcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,013 copying build/lib.linux-armv7l-3.9/asap3/analysis/findcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,017 copying build/lib.linux-armv7l-3.9/asap3/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,020 copying build/lib.linux-armv7l-3.9/asap3/analysis/clusterposition.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,024 copying build/lib.linux-armv7l-3.9/asap3/analysis/averagepositions.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,028 copying build/lib.linux-armv7l-3.9/asap3/analysis/ptm.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,032 copying build/lib.linux-armv7l-3.9/asap3/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,036 copying build/lib.linux-armv7l-3.9/asap3/analysis/localstructure.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-14T20:20:19,041 copying build/lib.linux-armv7l-3.9/asap3/constraints.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:19,045 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T20:20:19,047 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Start.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T20:20:19,051 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Metropolis.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T20:20:19,054 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Basin.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T20:20:19,059 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T20:20:19,063 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-14T20:20:19,067 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T20:20:19,068 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T20:20:19,076 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Surface.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T20:20:19,080 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-14T20:20:19,085 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T20:20:19,086 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T20:20:19,094 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T20:20:19,098 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-14T20:20:19,106 creating build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T20:20:19,111 copying build/lib.linux-armv7l-3.9/asap3/optimize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T20:20:19,120 copying build/lib.linux-armv7l-3.9/asap3/optimize/fire.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T20:20:19,123 copying build/lib.linux-armv7l-3.9/asap3/optimize/optimize.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T20:20:19,128 copying build/lib.linux-armv7l-3.9/asap3/optimize/mdmin.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-14T20:20:19,131 copying build/lib.linux-armv7l-3.9/asap3/__init__.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:19,136 copying build/lib.linux-armv7l-3.9/asap3/EMT2011Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:19,139 copying build/lib.linux-armv7l-3.9/asap3/EMT2011_py.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-14T20:20:19,147 creating build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,149 creating build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T20:20:19,151 copying build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-14T20:20:19,153 copying build/lib.linux-armv7l-3.9/asap3/Internal/ParallelListOfAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,157 copying build/lib.linux-armv7l-3.9/asap3/Internal/BuiltinPotentials.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,161 copying build/lib.linux-armv7l-3.9/asap3/Internal/OpenKIMcalculator.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,166 copying build/lib.linux-armv7l-3.9/asap3/Internal/EMTParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,169 copying build/lib.linux-armv7l-3.9/asap3/Internal/Subject.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,173 copying build/lib.linux-armv7l-3.9/asap3/Internal/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,176 copying build/lib.linux-armv7l-3.9/asap3/Internal/CheckArray.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,180 copying build/lib.linux-armv7l-3.9/asap3/Internal/Collector.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,184 copying build/lib.linux-armv7l-3.9/asap3/Internal/checkversion.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,189 copying build/lib.linux-armv7l-3.9/asap3/Internal/Builtins.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,193 copying build/lib.linux-armv7l-3.9/asap3/Internal/MonteCarloAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,197 copying build/lib.linux-armv7l-3.9/asap3/Internal/UtilityFunctions.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,202 copying build/lib.linux-armv7l-3.9/asap3/Internal/ListOfElements.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,206 copying build/lib.linux-armv7l-3.9/asap3/Internal/Threads.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-14T20:20:19,210 running install_egg_info 2021-07-14T20:20:19,255 running egg_info 2021-07-14T20:20:19,256 creating asap3.egg-info 2021-07-14T20:20:19,258 writing asap3.egg-info/PKG-INFO 2021-07-14T20:20:19,262 writing dependency_links to asap3.egg-info/dependency_links.txt 2021-07-14T20:20:19,267 writing top-level names to asap3.egg-info/top_level.txt 2021-07-14T20:20:19,270 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T20:20:19,461 reading manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T20:20:19,463 reading manifest template 'MANIFEST.in' 2021-07-14T20:20:19,642 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-14T20:20:19,643 warning: no files found matching 'Test/TestParallel-openmpi.sh' 2021-07-14T20:20:19,644 adding license file 'LICENSE' 2021-07-14T20:20:19,645 adding license file 'LICENSE.LESSER' 2021-07-14T20:20:19,692 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-14T20:20:19,697 Copying asap3.egg-info to build/bdist.linux-armv7l/wheel/asap3-3.11.10-py3.9.egg-info 2021-07-14T20:20:19,718 running install_scripts 2021-07-14T20:20:19,858 creating build/bdist.linux-armv7l/wheel/asap3-3.11.10.data 2021-07-14T20:20:19,859 creating build/bdist.linux-armv7l/wheel/asap3-3.11.10.data/scripts 2021-07-14T20:20:19,861 copying build/scripts-3.9/asap-qsub -> build/bdist.linux-armv7l/wheel/asap3-3.11.10.data/scripts 2021-07-14T20:20:19,865 copying build/scripts-3.9/asap-sbatch -> build/bdist.linux-armv7l/wheel/asap3-3.11.10.data/scripts 2021-07-14T20:20:19,870 copying build/scripts-3.9/asap-python -> build/bdist.linux-armv7l/wheel/asap3-3.11.10.data/scripts 2021-07-14T20:20:20,152 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.10.data/scripts/asap-qsub to 755 2021-07-14T20:20:20,153 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.10.data/scripts/asap-sbatch to 755 2021-07-14T20:20:20,154 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.11.10.data/scripts/asap-python to 755 2021-07-14T20:20:20,204 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-14T20:20:20,204 adding license file "LICENSE.LESSER" (matched pattern "LICEN[CS]E*") 2021-07-14T20:20:20,224 creating build/bdist.linux-armv7l/wheel/asap3-3.11.10.dist-info/WHEEL 2021-07-14T20:20:20,228 creating '/tmp/pip-wheel-6rss1brb/asap3-3.11.10-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T20:20:25,220 adding '_asap_p3.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T20:20:25,317 adding 'asap3/EMT2011Parameters.py' 2021-07-14T20:20:25,322 adding 'asap3/EMT2011_py.py' 2021-07-14T20:20:25,325 adding 'asap3/EMT2013Parameters.py' 2021-07-14T20:20:25,327 adding 'asap3/GuptaParameters.py' 2021-07-14T20:20:25,329 adding 'asap3/__init__.py' 2021-07-14T20:20:25,331 adding 'asap3/constraints.py' 2021-07-14T20:20:25,333 adding 'asap3/fixepydoc.py' 2021-07-14T20:20:25,335 adding 'asap3/memory.py' 2021-07-14T20:20:25,338 adding 'asap3/mpi.py' 2021-07-14T20:20:25,340 adding 'asap3/testtools.py' 2021-07-14T20:20:25,342 adding 'asap3/timing.py' 2021-07-14T20:20:25,345 adding 'asap3/version.py' 2021-07-14T20:20:25,350 adding 'asap3/Internal/BuiltinPotentials.py' 2021-07-14T20:20:25,352 adding 'asap3/Internal/Builtins.py' 2021-07-14T20:20:25,354 adding 'asap3/Internal/CheckArray.py' 2021-07-14T20:20:25,357 adding 'asap3/Internal/Collector.py' 2021-07-14T20:20:25,360 adding 'asap3/Internal/EMTParameters.py' 2021-07-14T20:20:25,362 adding 'asap3/Internal/ListOfElements.py' 2021-07-14T20:20:25,364 adding 'asap3/Internal/MonteCarloAtoms.py' 2021-07-14T20:20:25,368 adding 'asap3/Internal/OpenKIMcalculator.py' 2021-07-14T20:20:25,371 adding 'asap3/Internal/ParallelListOfAtoms.py' 2021-07-14T20:20:25,374 adding 'asap3/Internal/Subject.py' 2021-07-14T20:20:25,376 adding 'asap3/Internal/Threads.py' 2021-07-14T20:20:25,379 adding 'asap3/Internal/UtilityFunctions.py' 2021-07-14T20:20:25,381 adding 'asap3/Internal/__init__.py' 2021-07-14T20:20:25,383 adding 'asap3/Internal/checkversion.py' 2021-07-14T20:20:25,386 adding 'asap3/Internal/Compatibility/__init__.py' 2021-07-14T20:20:25,389 adding 'asap3/MonteCarlo/Base.py' 2021-07-14T20:20:25,392 adding 'asap3/MonteCarlo/Basin.py' 2021-07-14T20:20:25,394 adding 'asap3/MonteCarlo/Metropolis.py' 2021-07-14T20:20:25,396 adding 'asap3/MonteCarlo/Start.py' 2021-07-14T20:20:25,398 adding 'asap3/MonteCarlo/__init__.py' 2021-07-14T20:20:25,402 adding 'asap3/MonteCarlo/Moves/Base.py' 2021-07-14T20:20:25,405 adding 'asap3/MonteCarlo/Moves/Surface.py' 2021-07-14T20:20:25,407 adding 'asap3/MonteCarlo/Moves/__init__.py' 2021-07-14T20:20:25,410 adding 'asap3/MonteCarlo/Moves/Data/__init__.py' 2021-07-14T20:20:25,413 adding 'asap3/MonteCarlo/Moves/Data/fcc.py' 2021-07-14T20:20:25,415 adding 'asap3/MonteCarlo/Moves/Data/symmetry.py' 2021-07-14T20:20:25,419 adding 'asap3/Tools/AsapFileToTrajectory.py' 2021-07-14T20:20:25,421 adding 'asap3/Tools/AtomicEnergies.py' 2021-07-14T20:20:25,423 adding 'asap3/Tools/EMT_two_atom_test.py' 2021-07-14T20:20:25,426 adding 'asap3/Tools/ElasticConstants.py' 2021-07-14T20:20:25,428 adding 'asap3/Tools/MaterialProperties.py' 2021-07-14T20:20:25,431 adding 'asap3/Tools/OptimizationDatabase.py' 2021-07-14T20:20:25,434 adding 'asap3/Tools/SurfaceEnergies.py' 2021-07-14T20:20:25,436 adding 'asap3/Tools/Timing.py' 2021-07-14T20:20:25,438 adding 'asap3/Tools/__init__.py' 2021-07-14T20:20:25,440 adding 'asap3/Tools/niflheim.py' 2021-07-14T20:20:25,444 adding 'asap3/Tools/ParameterOptimization/EMT.py' 2021-07-14T20:20:25,446 adding 'asap3/Tools/ParameterOptimization/GetParameters.py' 2021-07-14T20:20:25,449 adding 'asap3/Tools/ParameterOptimization/Optimization.py' 2021-07-14T20:20:25,452 adding 'asap3/Tools/ParameterOptimization/Performance.py' 2021-07-14T20:20:25,457 adding 'asap3/Tools/ParameterOptimization/Quantities.py' 2021-07-14T20:20:25,460 adding 'asap3/Tools/ParameterOptimization/RGL.py' 2021-07-14T20:20:25,466 adding 'asap3/Tools/ParameterOptimization/Sampling.py' 2021-07-14T20:20:25,480 adding 'asap3/Tools/ParameterOptimization/ScipyFmin.py' 2021-07-14T20:20:25,484 adding 'asap3/Tools/ParameterOptimization/Search.py' 2021-07-14T20:20:25,487 adding 'asap3/Tools/ParameterOptimization/SearchParallel.py' 2021-07-14T20:20:25,489 adding 'asap3/Tools/ParameterOptimization/__init__.py' 2021-07-14T20:20:25,493 adding 'asap3/analysis/__init__.py' 2021-07-14T20:20:25,495 adding 'asap3/analysis/averagepositions.py' 2021-07-14T20:20:25,497 adding 'asap3/analysis/clusterposition.py' 2021-07-14T20:20:25,499 adding 'asap3/analysis/cutcluster.py' 2021-07-14T20:20:25,502 adding 'asap3/analysis/findcluster.py' 2021-07-14T20:20:25,505 adding 'asap3/analysis/localstructure.py' 2021-07-14T20:20:25,507 adding 'asap3/analysis/particle.py' 2021-07-14T20:20:25,510 adding 'asap3/analysis/ptm.py' 2021-07-14T20:20:25,513 adding 'asap3/analysis/rdf.py' 2021-07-14T20:20:25,516 adding 'asap3/io/ReadOldFiles.py' 2021-07-14T20:20:25,518 adding 'asap3/io/__init__.py' 2021-07-14T20:20:25,521 adding 'asap3/io/bundletrajectory.py' 2021-07-14T20:20:25,524 adding 'asap3/io/cpu_setup.py' 2021-07-14T20:20:25,526 adding 'asap3/io/trajectory.py' 2021-07-14T20:20:25,529 adding 'asap3/md/__init__.py' 2021-07-14T20:20:25,532 adding 'asap3/md/langevin.py' 2021-07-14T20:20:25,534 adding 'asap3/md/md.py' 2021-07-14T20:20:25,537 adding 'asap3/md/npt.py' 2021-07-14T20:20:25,539 adding 'asap3/md/nptberendsen.py' 2021-07-14T20:20:25,540 adding 'asap3/md/nvtberendsen.py' 2021-07-14T20:20:25,542 adding 'asap3/md/velocitydistribution.py' 2021-07-14T20:20:25,544 adding 'asap3/md/verlet.py' 2021-07-14T20:20:25,546 adding 'asap3/md/verlet_fast.py' 2021-07-14T20:20:25,549 adding 'asap3/nanoparticle_mc/AdsCalc.py' 2021-07-14T20:20:25,551 adding 'asap3/nanoparticle_mc/Logger.py' 2021-07-14T20:20:25,553 adding 'asap3/nanoparticle_mc/__init__.py' 2021-07-14T20:20:25,556 adding 'asap3/nanoparticle_mc/atommontecarlodata.py' 2021-07-14T20:20:25,559 adding 'asap3/nanoparticle_mc/cluster.py' 2021-07-14T20:20:25,562 adding 'asap3/nanoparticle_mc/clusteratom.py' 2021-07-14T20:20:25,564 adding 'asap3/nanoparticle_mc/langmuirExpression.py' 2021-07-14T20:20:25,566 adding 'asap3/nanoparticle_mc/mc_result.py' 2021-07-14T20:20:25,568 adding 'asap3/nanoparticle_mc/resizecluster.py' 2021-07-14T20:20:25,571 adding 'asap3/nanoparticle_mc/data/__init__.py' 2021-07-14T20:20:25,573 adding 'asap3/nanoparticle_mc/data/au.py' 2021-07-14T20:20:25,576 adding 'asap3/nanoparticle_mc/data/fcc.py' 2021-07-14T20:20:25,578 adding 'asap3/nanoparticle_mc/data/symmetry.py' 2021-07-14T20:20:25,580 adding 'asap3/nanoparticle_mc/montecarlo/__init__.py' 2021-07-14T20:20:25,587 adding 'asap3/nanoparticle_mc/montecarlo/atom.py' 2021-07-14T20:20:25,592 adding 'asap3/nanoparticle_mc/montecarlo/surface.py' 2021-07-14T20:20:25,595 adding 'asap3/optimize/__init__.py' 2021-07-14T20:20:25,597 adding 'asap3/optimize/fire.py' 2021-07-14T20:20:25,599 adding 'asap3/optimize/mdmin.py' 2021-07-14T20:20:25,601 adding 'asap3/optimize/optimize.py' 2021-07-14T20:20:25,604 adding 'asap3/setup/VelocityDistribution.py' 2021-07-14T20:20:25,606 adding 'asap3/setup/__init__.py' 2021-07-14T20:20:25,608 adding 'asap3/setup/dislocation.py' 2021-07-14T20:20:25,611 adding 'asap3/setup/displacementfield.py' 2021-07-14T20:20:25,613 adding 'asap3/setup/multidislocation.py' 2021-07-14T20:20:25,616 adding 'asap3/setup/nanocrystalline/__init__.py' 2021-07-14T20:20:25,618 adding 'asap3/setup/nanocrystalline/dislocated.py' 2021-07-14T20:20:25,620 adding 'asap3/setup/nanocrystalline/energy.py' 2021-07-14T20:20:25,623 adding 'asap3/setup/nanocrystalline/grain_structures.py' 2021-07-14T20:20:25,626 adding 'asap3/setup/nanocrystalline/helpers.py' 2021-07-14T20:20:25,629 adding 'asap3/setup/nanocrystalline/nanocrystalline.py' 2021-07-14T20:20:25,633 adding 'asap3/setup/nanocrystalline/nanocrystalline_orig.py' 2021-07-14T20:20:25,635 adding 'asap3/setup/nanocrystalline/plane_utils.py' 2021-07-14T20:20:25,638 adding 'asap3/setup/nanocrystalline/quat_utils.py' 2021-07-14T20:20:28,825 adding 'asap3-3.11.10.data/scripts/asap-python' 2021-07-14T20:20:28,928 adding 'asap3-3.11.10.data/scripts/asap-qsub' 2021-07-14T20:20:28,931 adding 'asap3-3.11.10.data/scripts/asap-sbatch' 2021-07-14T20:20:28,959 adding 'asap3-3.11.10.dist-info/LICENSE' 2021-07-14T20:20:28,964 adding 'asap3-3.11.10.dist-info/LICENSE.LESSER' 2021-07-14T20:20:28,970 adding 'asap3-3.11.10.dist-info/METADATA' 2021-07-14T20:20:28,972 adding 'asap3-3.11.10.dist-info/WHEEL' 2021-07-14T20:20:28,973 adding 'asap3-3.11.10.dist-info/top_level.txt' 2021-07-14T20:20:28,976 adding 'asap3-3.11.10.dist-info/RECORD' 2021-07-14T20:20:29,124 removing build/bdist.linux-armv7l/wheel 2021-07-14T20:20:29,556 Building wheel for asap3 (setup.py): finished with status 'done' 2021-07-14T20:20:29,794 Created wheel for asap3: filename=asap3-3.11.10-cp39-cp39-linux_armv7l.whl size=8545716 sha256=7d75dfa793eb7fd1d09962ad4693addc5ee4767aba68893a9d59cf90fa345415 2021-07-14T20:20:29,795 Stored in directory: /tmp/pip-ephem-wheel-cache-92vzkbb9/wheels/85/ec/2c/153773968052de4e6e2900f4b093b75ae00806f8047f91961a 2021-07-14T20:20:29,837 Successfully built asap3 2021-07-14T20:20:30,162 Removed build tracker: '/tmp/pip-req-tracker-dpspc6ew'