2021-07-14T20:24:55,136 Created temporary directory: /tmp/pip-ephem-wheel-cache-fz0kvqrx 2021-07-14T20:24:55,139 Created temporary directory: /tmp/pip-req-tracker-9jf6tyn1 2021-07-14T20:24:55,140 Initialized build tracking at /tmp/pip-req-tracker-9jf6tyn1 2021-07-14T20:24:55,140 Created build tracker: /tmp/pip-req-tracker-9jf6tyn1 2021-07-14T20:24:55,140 Entered build tracker: /tmp/pip-req-tracker-9jf6tyn1 2021-07-14T20:24:55,141 Created temporary directory: /tmp/pip-wheel-9z4m7hce 2021-07-14T20:24:55,172 1 location(s) to search for versions of frag-pele: 2021-07-14T20:24:55,172 * https://pypi.org/simple/frag-pele/ 2021-07-14T20:24:55,172 Fetching project page and analyzing links: https://pypi.org/simple/frag-pele/ 2021-07-14T20:24:55,173 Getting page https://pypi.org/simple/frag-pele/ 2021-07-14T20:24:55,175 Found index url https://pypi.org/simple 2021-07-14T20:24:55,272 Found link https://files.pythonhosted.org/packages/04/68/6d6d1e835589a4b25dc8606c3afc9365f6391d2f8deaf20a505280a1d1f4/frag_pele-1.1.0.tar.gz#sha256=dd58277af0db3fa42c95f96b546fcc3b5ea844d36d2626987dd133411f8bf0d3 (from https://pypi.org/simple/frag-pele/), version: 1.1.0 2021-07-14T20:24:55,273 Found link https://files.pythonhosted.org/packages/d0/f0/86387845e4a8f6e60d4a4c22522f839fc3beda80130663bd03382b28a1f4/frag_pele-1.1.0.1.tar.gz#sha256=c489e75d2c39a7d5aebf4c1b62eee5ee379c9de7801588146f19244877117ec0 (from https://pypi.org/simple/frag-pele/), version: 1.1.0.1 2021-07-14T20:24:55,273 Found link https://files.pythonhosted.org/packages/6f/ac/a7720cdad2c4885cb41e28005d05cd1897364e24aa1d2c5ca777e8f74536/frag_pele-1.1.0.2.tar.gz#sha256=a2c7046a9bd88a952d6abcccbee64e400ec6f55cc5e59cd2f929f9bf5f925b36 (from https://pypi.org/simple/frag-pele/), version: 1.1.0.2 2021-07-14T20:24:55,274 Found link https://files.pythonhosted.org/packages/b5/51/ed7816753a4eeed924b5890507ebcfe9a413d63070b08ac248f683cefac2/frag_pele-1.1.0.3.tar.gz#sha256=520f8442ed7f0f9d0508d8cb737fc530584f92af11ccf5de499b756ed5406272 (from https://pypi.org/simple/frag-pele/), version: 1.1.0.3 2021-07-14T20:24:55,274 Found link https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz#sha256=02eeff856281090a6b00a9f57a887c51dc012936068b74908a6c00ab5109f034 (from https://pypi.org/simple/frag-pele/), version: 1.1.0.4 2021-07-14T20:24:55,275 Found link https://files.pythonhosted.org/packages/ed/d4/6648da9cb9257d09439502d43db14a4942c4d1dd35d40377d4ce46c3c466/frag_pele-2.1.1.tar.gz#sha256=ef6b789f430e2222a5e0627e64b503dd74b4c66f0321e35daeab2d856e314d0a (from https://pypi.org/simple/frag-pele/), version: 2.1.1 2021-07-14T20:24:55,275 Found link https://files.pythonhosted.org/packages/ee/f5/0400b73f5f6be4e6fb5a1792db7698af6084f6930a9abeb89cb1535f1bdd/frag_pele-2.1.2.tar.gz#sha256=625300b3f32c23c7e8a14c263eded89b7adf11893eb85e4718800ee2f9d89a54 (from https://pypi.org/simple/frag-pele/), version: 2.1.2 2021-07-14T20:24:55,275 Found link https://files.pythonhosted.org/packages/90/35/ace23ab99bc3e98a8269a3a3d33e8e717768ff6db75754077efd94323e16/frag_pele-2.1.3.tar.gz#sha256=7411cc49a09a9565a7713d5554d57957e4dc8457361f6f8ba8b5ab53a4bca573 (from https://pypi.org/simple/frag-pele/), version: 2.1.3 2021-07-14T20:24:55,276 Found link https://files.pythonhosted.org/packages/79/a5/050e2ac47772096b1906f154e7c704d2e3d121823fe04772618f4e288289/frag_pele-2.2.1.tar.gz#sha256=2960112e018694cb1ede57429964732a12fe6a485d11ee542ef70d48e650fb37 (from https://pypi.org/simple/frag-pele/), version: 2.2.1 2021-07-14T20:24:55,294 Found link https://files.pythonhosted.org/packages/4a/93/046a93fe08f3f658c27530aadccb6b6e9e9a1cb25aae99d86940af5adce0/frag_pele-3.0.0-py3-none-any.whl#sha256=1793462d15783e1f0cf560b62550e3dfd2d27b4ee54d8ad026a23114f0386b42 (from https://pypi.org/simple/frag-pele/), version: 3.0.0 2021-07-14T20:24:55,295 Found link https://files.pythonhosted.org/packages/33/76/a0f81fd6c76ea115357677bb529efebf25ae6b905c2bcccb17a2f6f1718b/frag_pele-3.0.0.tar.gz#sha256=540ee2c709f070752bdebe6cf7af110dd071287a01611bf76a2299be30c2697d (from https://pypi.org/simple/frag-pele/), version: 3.0.0 2021-07-14T20:24:55,295 Skipping link: not a file: https://pypi.org/simple/frag-pele/ 2021-07-14T20:24:55,298 Given no hashes to check 1 links for project 'frag-pele': discarding no candidates 2021-07-14T20:24:55,318 Collecting frag-pele==1.1.0.4 2021-07-14T20:24:55,320 Created temporary directory: /tmp/pip-unpack-kwm9mh6v 2021-07-14T20:24:55,690 Downloading frag_pele-1.1.0.4.tar.gz (236 kB) 2021-07-14T20:24:56,105 Added frag-pele==1.1.0.4 from https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz#sha256=02eeff856281090a6b00a9f57a887c51dc012936068b74908a6c00ab5109f034 to build tracker '/tmp/pip-req-tracker-9jf6tyn1' 2021-07-14T20:24:56,106 Running setup.py (path:/tmp/pip-wheel-9z4m7hce/frag-pele_7b4024a4d505430c99d3b4c6ed2db34a/setup.py) egg_info for package frag-pele 2021-07-14T20:24:56,107 Created temporary directory: /tmp/pip-pip-egg-info-krlxkhoi 2021-07-14T20:24:56,108 Running command python setup.py egg_info 2021-07-14T20:24:57,611 Warning: 'classifiers' should be a list, got type 'tuple' 2021-07-14T20:24:57,767 piwheels30 2021-07-14T20:24:57,767 running egg_info 2021-07-14T20:24:57,769 creating /tmp/pip-pip-egg-info-krlxkhoi/frag_pele.egg-info 2021-07-14T20:24:57,771 writing /tmp/pip-pip-egg-info-krlxkhoi/frag_pele.egg-info/PKG-INFO 2021-07-14T20:24:57,773 writing dependency_links to /tmp/pip-pip-egg-info-krlxkhoi/frag_pele.egg-info/dependency_links.txt 2021-07-14T20:24:57,775 writing requirements to /tmp/pip-pip-egg-info-krlxkhoi/frag_pele.egg-info/requires.txt 2021-07-14T20:24:57,776 writing top-level names to /tmp/pip-pip-egg-info-krlxkhoi/frag_pele.egg-info/top_level.txt 2021-07-14T20:24:57,777 writing manifest file '/tmp/pip-pip-egg-info-krlxkhoi/frag_pele.egg-info/SOURCES.txt' 2021-07-14T20:24:57,977 reading manifest file '/tmp/pip-pip-egg-info-krlxkhoi/frag_pele.egg-info/SOURCES.txt' 2021-07-14T20:24:57,979 reading manifest template 'MANIFEST.in' 2021-07-14T20:24:57,992 writing manifest file '/tmp/pip-pip-egg-info-krlxkhoi/frag_pele.egg-info/SOURCES.txt' 2021-07-14T20:24:58,127 Source in /tmp/pip-wheel-9z4m7hce/frag-pele_7b4024a4d505430c99d3b4c6ed2db34a has version 1.1.0.4, which satisfies requirement frag-pele==1.1.0.4 from https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz#sha256=02eeff856281090a6b00a9f57a887c51dc012936068b74908a6c00ab5109f034 2021-07-14T20:24:58,128 Removed frag-pele==1.1.0.4 from https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz#sha256=02eeff856281090a6b00a9f57a887c51dc012936068b74908a6c00ab5109f034 from build tracker '/tmp/pip-req-tracker-9jf6tyn1' 2021-07-14T20:24:58,133 Created temporary directory: /tmp/pip-unpack-d4c9idru 2021-07-14T20:24:58,133 Building wheels for collected packages: frag-pele 2021-07-14T20:24:58,138 Created temporary directory: /tmp/pip-wheel-uhq61sq5 2021-07-14T20:24:58,138 Building wheel for frag-pele (setup.py): started 2021-07-14T20:24:58,139 Destination directory: /tmp/pip-wheel-uhq61sq5 2021-07-14T20:24:58,139 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-9z4m7hce/frag-pele_7b4024a4d505430c99d3b4c6ed2db34a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-9z4m7hce/frag-pele_7b4024a4d505430c99d3b4c6ed2db34a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-uhq61sq5 2021-07-14T20:24:59,536 piwheels30 2021-07-14T20:24:59,596 Warning: 'classifiers' should be a list, got type 'tuple' 2021-07-14T20:24:59,766 running bdist_wheel 2021-07-14T20:24:59,771 running build 2021-07-14T20:24:59,772 running build_py 2021-07-14T20:24:59,914 creating build 2021-07-14T20:24:59,914 creating build/lib.linux-armv7l-3.9 2021-07-14T20:24:59,915 creating build/lib.linux-armv7l-3.9/frag_pele 2021-07-14T20:24:59,916 copying frag_pele/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele 2021-07-14T20:24:59,917 copying frag_pele/serie_handler.py -> build/lib.linux-armv7l-3.9/frag_pele 2021-07-14T20:24:59,920 copying frag_pele/main.py -> build/lib.linux-armv7l-3.9/frag_pele 2021-07-14T20:24:59,922 copying frag_pele/constants.py -> build/lib.linux-armv7l-3.9/frag_pele 2021-07-14T20:24:59,925 creating build/lib.linux-armv7l-3.9/frag_pele/Analysis 2021-07-14T20:24:59,926 copying frag_pele/Analysis/rmsd_computer.py -> build/lib.linux-armv7l-3.9/frag_pele/Analysis 2021-07-14T20:24:59,928 copying frag_pele/Analysis/analyser.py -> build/lib.linux-armv7l-3.9/frag_pele/Analysis 2021-07-14T20:24:59,931 copying frag_pele/Analysis/output_files.py -> build/lib.linux-armv7l-3.9/frag_pele/Analysis 2021-07-14T20:24:59,933 copying frag_pele/Analysis/get_plots.py -> build/lib.linux-armv7l-3.9/frag_pele/Analysis 2021-07-14T20:24:59,935 copying frag_pele/Analysis/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/Analysis 2021-07-14T20:24:59,937 copying frag_pele/Analysis/forcefield_analysis.py -> build/lib.linux-armv7l-3.9/frag_pele/Analysis 2021-07-14T20:24:59,939 copying frag_pele/Analysis/interaction_detector.py -> build/lib.linux-armv7l-3.9/frag_pele/Analysis 2021-07-14T20:24:59,942 copying frag_pele/Analysis/sidecahins_analyser.py -> build/lib.linux-armv7l-3.9/frag_pele/Analysis 2021-07-14T20:24:59,946 creating build/lib.linux-armv7l-3.9/frag_pele/Growing 2021-07-14T20:24:59,946 copying frag_pele/Growing/template_selector.py -> build/lib.linux-armv7l-3.9/frag_pele/Growing 2021-07-14T20:24:59,949 copying frag_pele/Growing/add_fragment_from_pdbs.py -> build/lib.linux-armv7l-3.9/frag_pele/Growing 2021-07-14T20:24:59,952 copying frag_pele/Growing/simulations_linker.py -> build/lib.linux-armv7l-3.9/frag_pele/Growing 2021-07-14T20:24:59,955 copying frag_pele/Growing/template_fragmenter.py -> build/lib.linux-armv7l-3.9/frag_pele/Growing 2021-07-14T20:24:59,958 copying frag_pele/Growing/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/Growing 2021-07-14T20:24:59,960 copying frag_pele/Growing/bestStructs.py -> build/lib.linux-armv7l-3.9/frag_pele/Growing 2021-07-14T20:24:59,963 creating build/lib.linux-armv7l-3.9/frag_pele/Banner 2021-07-14T20:24:59,964 copying frag_pele/Banner/Detector.py -> build/lib.linux-armv7l-3.9/frag_pele/Banner 2021-07-14T20:24:59,967 copying frag_pele/Banner/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/Banner 2021-07-14T20:24:59,969 creating build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,970 copying frag_pele/Helpers/clusterizer.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,973 copying frag_pele/Helpers/folder_handler.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,975 copying frag_pele/Helpers/checker.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,977 copying frag_pele/Helpers/check_constants.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,979 copying frag_pele/Helpers/helpers.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,981 copying frag_pele/Helpers/constraints.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,983 copying frag_pele/Helpers/runner.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,986 copying frag_pele/Helpers/correct_fragment_names.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,988 copying frag_pele/Helpers/center_of_mass.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,991 copying frag_pele/Helpers/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,992 copying frag_pele/Helpers/templatize.py -> build/lib.linux-armv7l-3.9/frag_pele/Helpers 2021-07-14T20:24:59,995 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo 2021-07-14T20:24:59,996 copying frag_pele/AdaptivePELE_repo/setup.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo 2021-07-14T20:24:59,998 copying frag_pele/AdaptivePELE_repo/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo 2021-07-14T20:25:00,000 creating build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:25:00,001 copying frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:25:00,008 copying frag_pele/PlopRotTemp_S_2017/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:25:00,010 copying frag_pele/PlopRotTemp_S_2017/ligand_prep.py -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:25:00,012 copying frag_pele/PlopRotTemp_S_2017/main.py -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:25:00,016 creating build/lib.linux-armv7l-3.9/frag_pele/Growing/AddingFragHelpers 2021-07-14T20:25:00,017 copying frag_pele/Growing/AddingFragHelpers/pdb_joiner.py -> build/lib.linux-armv7l-3.9/frag_pele/Growing/AddingFragHelpers 2021-07-14T20:25:00,020 copying frag_pele/Growing/AddingFragHelpers/complex_to_prody.py -> build/lib.linux-armv7l-3.9/frag_pele/Growing/AddingFragHelpers 2021-07-14T20:25:00,022 copying frag_pele/Growing/AddingFragHelpers/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/Growing/AddingFragHelpers 2021-07-14T20:25:00,025 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:25:00,026 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:25:00,028 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:25:00,030 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:25:00,034 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:25:00,036 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:25:00,038 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2021-07-14T20:25:00,039 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2021-07-14T20:25:00,042 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2021-07-14T20:25:00,043 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2021-07-14T20:25:00,046 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:25:00,047 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:25:00,049 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:25:00,051 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:25:00,053 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:25:00,056 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:25:00,057 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:25:00,062 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:25:00,065 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:25:00,066 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:25:00,069 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:25:00,072 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2021-07-14T20:25:00,073 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2021-07-14T20:25:00,076 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2021-07-14T20:25:00,079 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2021-07-14T20:25:00,082 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,083 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,086 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,088 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,090 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,092 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,095 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,097 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,099 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,101 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,103 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,105 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,107 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,109 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,111 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,113 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,116 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,118 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,120 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,122 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,124 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,126 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,128 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:25:00,131 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2021-07-14T20:25:00,132 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2021-07-14T20:25:00,136 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2021-07-14T20:25:00,137 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2021-07-14T20:25:00,140 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,141 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,143 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,146 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,148 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,151 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,154 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,157 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,160 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,162 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,165 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,167 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,169 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,171 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,174 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,176 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,178 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,180 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,183 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:25:00,184 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:25:00,186 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:25:00,187 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:25:00,189 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:25:00,192 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:25:00,194 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:25:00,198 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:25:00,202 creating build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:25:00,203 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:25:00,207 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:25:00,211 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:25:00,214 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:25:00,216 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:25:00,218 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:25:00,221 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:25:00,224 creating build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:25:00,224 copying frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:25:00,226 copying frag_pele/PlopRotTemp_S_2017/template/__init__.py -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:25:00,228 copying frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:25:00,230 copying frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:25:00,232 running egg_info 2021-07-14T20:25:00,272 writing frag_pele.egg-info/PKG-INFO 2021-07-14T20:25:00,273 writing dependency_links to frag_pele.egg-info/dependency_links.txt 2021-07-14T20:25:00,275 writing requirements to frag_pele.egg-info/requires.txt 2021-07-14T20:25:00,276 writing top-level names to frag_pele.egg-info/top_level.txt 2021-07-14T20:25:00,331 reading manifest file 'frag_pele.egg-info/SOURCES.txt' 2021-07-14T20:25:00,338 reading manifest template 'MANIFEST.in' 2021-07-14T20:25:00,355 writing manifest file 'frag_pele.egg-info/SOURCES.txt' 2021-07-14T20:25:00,361 copying frag_pele/log_configure.ini -> build/lib.linux-armv7l-3.9/frag_pele 2021-07-14T20:25:00,363 creating build/lib.linux-armv7l-3.9/frag_pele/Templates 2021-07-14T20:25:00,364 copying frag_pele/Templates/constants.py -> build/lib.linux-armv7l-3.9/frag_pele/Templates 2021-07-14T20:25:00,367 copying frag_pele/Templates/control_template.conf -> build/lib.linux-armv7l-3.9/frag_pele/Templates 2021-07-14T20:25:00,370 creating build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:25:00,371 copying frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:25:00,374 copying frag_pele/PlopRotTemp_S_2017/param/params.cov -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:25:00,382 copying frag_pele/PlopRotTemp_S_2017/param/params.nb -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:25:00,386 copying frag_pele/PlopRotTemp_S_2017/param/sgbnp.param -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:25:00,390 copying frag_pele/PlopRotTemp_S_2017/param/similarity.param -> build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:25:00,394 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.pyx -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:00,397 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pxd -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:25:00,400 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pyx -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:25:00,403 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pxd -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:25:00,406 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pyx -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:25:00,409 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pxd -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:25:00,412 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx -> build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:25:00,439 running build_ext 2021-07-14T20:25:00,443 cythoning frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx to frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.c 2021-07-14T20:25:01,064 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-9z4m7hce/frag-pele_7b4024a4d505430c99d3b4c6ed2db34a/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pxd 2021-07-14T20:25:01,064 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T20:25:04,218 cythoning frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pyx to frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.c 2021-07-14T20:25:04,225 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-9z4m7hce/frag-pele_7b4024a4d505430c99d3b4c6ed2db34a/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pxd 2021-07-14T20:25:04,226 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T20:25:06,323 cythoning frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pyx to frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.c 2021-07-14T20:25:06,331 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-9z4m7hce/frag-pele_7b4024a4d505430c99d3b4c6ed2db34a/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pxd 2021-07-14T20:25:06,331 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T20:25:08,093 cythoning frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.pyx to frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.c 2021-07-14T20:25:08,101 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-9z4m7hce/frag-pele_7b4024a4d505430c99d3b4c6ed2db34a/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.pyx 2021-07-14T20:25:08,101 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T20:25:15,108 building 'frag_pele.AdaptivePELE_repo.AdaptivePELE.atomset.atomset' extension 2021-07-14T20:25:15,109 creating build/temp.linux-armv7l-3.9 2021-07-14T20:25:15,110 creating build/temp.linux-armv7l-3.9/frag_pele 2021-07-14T20:25:15,111 creating build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo 2021-07-14T20:25:15,111 creating build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:25:15,112 creating build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:25:15,113 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ifrag_pele/AdaptivePELE_repo/AdaptivePELE -Ifrag_pele/AdaptivePELE_repo/AdaptivePELE/atomset -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.o 2021-07-14T20:25:15,614 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T20:25:15,615 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T20:25:15,615 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T20:25:15,615 from frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.c:612: 2021-07-14T20:25:15,615 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T20:25:15,615 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T20:25:15,616 | ^~~~~~~ 2021-07-14T20:25:35,739 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.cpython-39-arm-linux-gnueabihf.so 2021-07-14T20:25:35,929 building 'frag_pele.AdaptivePELE_repo.AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension 2021-07-14T20:25:35,930 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ifrag_pele/AdaptivePELE_repo/AdaptivePELE -Ifrag_pele/AdaptivePELE_repo/AdaptivePELE/atomset -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o 2021-07-14T20:25:36,339 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T20:25:36,339 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T20:25:36,340 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T20:25:36,340 from frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:612: 2021-07-14T20:25:36,340 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T20:25:36,340 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T20:25:36,340 | ^~~~~~~ 2021-07-14T20:25:49,456 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o -o build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-39-arm-linux-gnueabihf.so 2021-07-14T20:25:49,640 building 'frag_pele.AdaptivePELE_repo.AdaptivePELE.atomset.RMSDCalculator' extension 2021-07-14T20:25:49,641 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ifrag_pele/AdaptivePELE_repo/AdaptivePELE -Ifrag_pele/AdaptivePELE_repo/AdaptivePELE/atomset -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.c -o build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.o 2021-07-14T20:25:50,049 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T20:25:50,050 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T20:25:50,050 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T20:25:50,050 from frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.c:612: 2021-07-14T20:25:50,050 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T20:25:50,051 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T20:25:50,051 | ^~~~~~~ 2021-07-14T20:25:56,663 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.o -o build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.cpython-39-arm-linux-gnueabihf.so 2021-07-14T20:25:56,796 building 'frag_pele.AdaptivePELE_repo.AdaptivePELE.freeEnergies.utils' extension 2021-07-14T20:25:56,797 creating build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:25:56,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ifrag_pele/AdaptivePELE_repo/AdaptivePELE -Ifrag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.c -o build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.o 2021-07-14T20:25:57,203 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T20:25:57,203 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T20:25:57,203 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T20:25:57,204 from frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.c:612: 2021-07-14T20:25:57,204 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T20:25:57,204 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T20:25:57,204 | ^~~~~~~ 2021-07-14T20:26:10,617 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.o -o build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.cpython-39-arm-linux-gnueabihf.so 2021-07-14T20:26:10,837 installing to build/bdist.linux-armv7l/wheel 2021-07-14T20:26:10,837 running install 2021-07-14T20:26:10,840 running install_lib 2021-07-14T20:26:10,844 creating build/bdist.linux-armv7l 2021-07-14T20:26:10,845 creating build/bdist.linux-armv7l/wheel 2021-07-14T20:26:10,846 creating build/bdist.linux-armv7l/wheel/frag_pele 2021-07-14T20:26:10,848 creating build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-14T20:26:10,849 copying build/lib.linux-armv7l-3.9/frag_pele/Analysis/rmsd_computer.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-14T20:26:10,852 copying build/lib.linux-armv7l-3.9/frag_pele/Analysis/analyser.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-14T20:26:10,854 copying build/lib.linux-armv7l-3.9/frag_pele/Analysis/output_files.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-14T20:26:10,856 copying build/lib.linux-armv7l-3.9/frag_pele/Analysis/get_plots.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-14T20:26:10,859 copying build/lib.linux-armv7l-3.9/frag_pele/Analysis/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-14T20:26:10,861 copying build/lib.linux-armv7l-3.9/frag_pele/Analysis/forcefield_analysis.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-14T20:26:10,863 copying build/lib.linux-armv7l-3.9/frag_pele/Analysis/interaction_detector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-14T20:26:10,866 copying build/lib.linux-armv7l-3.9/frag_pele/Analysis/sidecahins_analyser.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-14T20:26:10,870 creating build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-14T20:26:10,871 copying build/lib.linux-armv7l-3.9/frag_pele/Growing/template_selector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-14T20:26:10,873 copying build/lib.linux-armv7l-3.9/frag_pele/Growing/add_fragment_from_pdbs.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-14T20:26:10,877 copying build/lib.linux-armv7l-3.9/frag_pele/Growing/simulations_linker.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-14T20:26:10,879 copying build/lib.linux-armv7l-3.9/frag_pele/Growing/template_fragmenter.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-14T20:26:10,883 copying build/lib.linux-armv7l-3.9/frag_pele/Growing/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-14T20:26:10,886 creating build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers 2021-07-14T20:26:10,887 copying build/lib.linux-armv7l-3.9/frag_pele/Growing/AddingFragHelpers/pdb_joiner.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers 2021-07-14T20:26:10,890 copying build/lib.linux-armv7l-3.9/frag_pele/Growing/AddingFragHelpers/complex_to_prody.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers 2021-07-14T20:26:10,892 copying build/lib.linux-armv7l-3.9/frag_pele/Growing/AddingFragHelpers/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers 2021-07-14T20:26:10,894 copying build/lib.linux-armv7l-3.9/frag_pele/Growing/bestStructs.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-14T20:26:10,898 creating build/bdist.linux-armv7l/wheel/frag_pele/Banner 2021-07-14T20:26:10,899 copying build/lib.linux-armv7l-3.9/frag_pele/Banner/Detector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Banner 2021-07-14T20:26:10,901 copying build/lib.linux-armv7l-3.9/frag_pele/Banner/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Banner 2021-07-14T20:26:10,904 creating build/bdist.linux-armv7l/wheel/frag_pele/Templates 2021-07-14T20:26:10,905 copying build/lib.linux-armv7l-3.9/frag_pele/Templates/control_template.conf -> build/bdist.linux-armv7l/wheel/frag_pele/Templates 2021-07-14T20:26:10,908 copying build/lib.linux-armv7l-3.9/frag_pele/Templates/constants.py -> build/bdist.linux-armv7l/wheel/frag_pele/Templates 2021-07-14T20:26:10,910 copying build/lib.linux-armv7l-3.9/frag_pele/log_configure.ini -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-14T20:26:10,912 copying build/lib.linux-armv7l-3.9/frag_pele/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-14T20:26:10,914 copying build/lib.linux-armv7l-3.9/frag_pele/serie_handler.py -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-14T20:26:10,918 creating build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,919 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/clusterizer.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,921 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/folder_handler.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,923 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/checker.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,926 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/check_constants.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,928 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/helpers.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,931 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/constraints.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,933 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/runner.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,936 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/correct_fragment_names.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,938 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/center_of_mass.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,941 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,942 copying build/lib.linux-armv7l-3.9/frag_pele/Helpers/templatize.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-14T20:26:10,945 copying build/lib.linux-armv7l-3.9/frag_pele/main.py -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-14T20:26:10,948 copying build/lib.linux-armv7l-3.9/frag_pele/constants.py -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-14T20:26:10,952 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo 2021-07-14T20:26:10,953 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:26:10,955 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/automateRoundsAdaptive.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:26:10,958 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2021-07-14T20:26:10,959 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/utilities.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2021-07-14T20:26:10,962 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2021-07-14T20:26:10,964 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/clusteringUtilities.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2021-07-14T20:26:10,966 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/makeRelease.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:26:10,970 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:26:10,971 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/blockNames.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:26:10,974 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:26:10,976 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/symmetries.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:26:10,978 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/constants.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2021-07-14T20:26:10,981 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:26:10,982 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clustering.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:26:10,987 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clusteringTypes.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:26:10,989 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:26:10,991 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculator.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:26:10,994 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2021-07-14T20:26:10,997 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2021-07-14T20:26:10,998 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/controlFileValidator.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2021-07-14T20:26:11,002 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/validatorBlockNames.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2021-07-14T20:26:11,005 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2021-07-14T20:26:11,007 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,008 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/numberOfClusters.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,012 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeNetworkFiles.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,014 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/addRejectedSteps.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,017 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyseClustering.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,020 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,022 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/pathwayRMSD.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,025 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/histCM.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,027 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotRMSF.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,030 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/splitTrajectory.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,032 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeClusteringStructures.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,034 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotSpawningClusters.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,037 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/networkCM.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,039 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/correctRMSD.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,042 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/findfirstbindingevent.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,045 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotAdaptive.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,047 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/compareClustering.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,051 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,053 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,055 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,058 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plot3DNetwork.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,060 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyse.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,063 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/makePNGs.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2021-07-14T20:26:11,066 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2021-07-14T20:26:11,067 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationrunner.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2021-07-14T20:26:11,071 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationTypes.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2021-07-14T20:26:11,073 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2021-07-14T20:26:11,075 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/adaptiveSampling.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:26:11,079 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/runAllTests.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:26:11,081 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE 2021-07-14T20:26:11,084 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,086 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimate.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,089 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDG.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,092 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,095 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,097 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.pyx -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,100 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,103 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/cluster.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,106 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,109 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,111 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extractCoords.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,114 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,117 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,119 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,121 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,124 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,126 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,152 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,155 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,157 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2021-07-14T20:26:11,160 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,161 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pxd -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,163 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,184 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pxd -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,186 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,189 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pxd -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,191 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,217 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pyx -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,220 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,222 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,233 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pyx -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2021-07-14T20:26:11,237 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:26:11,239 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculatortypes.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:26:11,241 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculator.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:26:11,245 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawningTypes.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:26:11,247 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawning.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:26:11,252 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2021-07-14T20:26:11,254 creating build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:26:11,256 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testSpawning.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:26:11,259 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testClustering.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:26:11,261 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testThresholdcalculator.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:26:11,264 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testDensityCalculator.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:26:11,266 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:26:11,268 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAtomset.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:26:11,271 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAdaptiveSampling.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2021-07-14T20:26:11,274 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/setup.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo 2021-07-14T20:26:11,277 copying build/lib.linux-armv7l-3.9/frag_pele/AdaptivePELE_repo/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/AdaptivePELE_repo 2021-07-14T20:26:11,279 creating build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:26:11,280 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:26:11,287 creating build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:26:11,288 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:26:11,290 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/template/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:26:11,292 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:26:11,294 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-14T20:26:11,298 creating build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:26:11,299 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param/params.cov -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:26:11,305 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param/sgbnp.param -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:26:11,308 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param/similarity.param -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:26:11,310 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param/params.nb -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:26:11,313 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-14T20:26:11,316 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:26:11,318 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/ligand_prep.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:26:11,320 copying build/lib.linux-armv7l-3.9/frag_pele/PlopRotTemp_S_2017/main.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-14T20:26:11,322 running install_egg_info 2021-07-14T20:26:11,328 Copying frag_pele.egg-info to build/bdist.linux-armv7l/wheel/frag_pele-1.1.0.4-py3.9.egg-info 2021-07-14T20:26:11,341 running install_scripts 2021-07-14T20:26:11,393 creating build/bdist.linux-armv7l/wheel/frag_pele-1.1.0.4.dist-info/WHEEL 2021-07-14T20:26:11,396 creating '/tmp/pip-wheel-uhq61sq5/frag_pele-1.1.0.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T20:26:11,398 adding 'frag_pele/__init__.py' 2021-07-14T20:26:11,400 adding 'frag_pele/constants.py' 2021-07-14T20:26:11,401 adding 'frag_pele/log_configure.ini' 2021-07-14T20:26:11,405 adding 'frag_pele/main.py' 2021-07-14T20:26:11,407 adding 'frag_pele/serie_handler.py' 2021-07-14T20:26:11,409 adding 'frag_pele/AdaptivePELE_repo/__init__.py' 2021-07-14T20:26:11,411 adding 'frag_pele/AdaptivePELE_repo/setup.py' 2021-07-14T20:26:11,413 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/__init__.py' 2021-07-14T20:26:11,417 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/adaptiveSampling.py' 2021-07-14T20:26:11,419 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/automateRoundsAdaptive.py' 2021-07-14T20:26:11,420 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/makeRelease.py' 2021-07-14T20:26:11,421 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/runAllTests.py' 2021-07-14T20:26:11,423 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/__init__.py' 2021-07-14T20:26:11,425 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/addRejectedSteps.py' 2021-07-14T20:26:11,426 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyse.py' 2021-07-14T20:26:11,428 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyseClustering.py' 2021-07-14T20:26:11,430 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py' 2021-07-14T20:26:11,432 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/compareClustering.py' 2021-07-14T20:26:11,434 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/correctRMSD.py' 2021-07-14T20:26:11,435 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/findfirstbindingevent.py' 2021-07-14T20:26:11,437 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/foldersFirstBindingEvent.py' 2021-07-14T20:26:11,438 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/histCM.py' 2021-07-14T20:26:11,440 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/makePNGs.py' 2021-07-14T20:26:11,441 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/networkCM.py' 2021-07-14T20:26:11,443 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/numberOfClusters.py' 2021-07-14T20:26:11,445 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/pathwayRMSD.py' 2021-07-14T20:26:11,446 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plot3DNetwork.py' 2021-07-14T20:26:11,448 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotAdaptive.py' 2021-07-14T20:26:11,449 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotRMSF.py' 2021-07-14T20:26:11,450 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotSpawningClusters.py' 2021-07-14T20:26:11,452 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/splitTrajectory.py' 2021-07-14T20:26:11,453 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeClusteringStructures.py' 2021-07-14T20:26:11,454 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeNetworkFiles.py' 2021-07-14T20:26:11,456 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeTrajToSnapshot.py' 2021-07-14T20:26:11,546 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T20:26:11,550 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pxd' 2021-07-14T20:26:11,551 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pyx' 2021-07-14T20:26:11,720 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T20:26:11,727 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pxd' 2021-07-14T20:26:11,729 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pyx' 2021-07-14T20:26:11,730 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/__init__.py' 2021-07-14T20:26:11,986 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T20:26:11,997 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pxd' 2021-07-14T20:26:12,000 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx' 2021-07-14T20:26:12,002 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/__init__.py' 2021-07-14T20:26:12,009 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clustering.py' 2021-07-14T20:26:12,011 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clusteringTypes.py' 2021-07-14T20:26:12,013 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculator.py' 2021-07-14T20:26:12,014 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculatortypes.py' 2021-07-14T20:26:12,016 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/__init__.py' 2021-07-14T20:26:12,018 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/blockNames.py' 2021-07-14T20:26:12,019 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/constants.py' 2021-07-14T20:26:12,021 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/symmetries.py' 2021-07-14T20:26:12,023 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/__init__.py' 2021-07-14T20:26:12,024 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py' 2021-07-14T20:26:12,026 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateDGiterations.py' 2021-07-14T20:26:12,028 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/checkDetailedBalance.py' 2021-07-14T20:26:12,029 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/cluster.py' 2021-07-14T20:26:12,031 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDGGrid.py' 2021-07-14T20:26:12,034 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDeltaG.py' 2021-07-14T20:26:12,036 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimate.py' 2021-07-14T20:26:12,038 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDG.py' 2021-07-14T20:26:12,040 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDGAdaptive.py' 2021-07-14T20:26:12,042 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extendTrajectories.py' 2021-07-14T20:26:12,044 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extractCoords.py' 2021-07-14T20:26:12,046 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/getRepresentativeStructures.py' 2021-07-14T20:26:12,048 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/ownBuildMSM.py' 2021-07-14T20:26:12,049 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/prepareMSMFolders.py' 2021-07-14T20:26:12,051 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/runMarkovChainModel.py' 2021-07-14T20:26:12,237 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T20:26:12,245 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.pyx' 2021-07-14T20:26:12,246 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py' 2021-07-14T20:26:12,248 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/__init__.py' 2021-07-14T20:26:12,249 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationTypes.py' 2021-07-14T20:26:12,253 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationrunner.py' 2021-07-14T20:26:12,256 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/__init__.py' 2021-07-14T20:26:12,257 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculator.py' 2021-07-14T20:26:12,259 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculatortypes.py' 2021-07-14T20:26:12,263 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawning.py' 2021-07-14T20:26:12,265 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawningTypes.py' 2021-07-14T20:26:12,266 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/__init__.py' 2021-07-14T20:26:12,268 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAdaptiveSampling.py' 2021-07-14T20:26:12,270 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAtomset.py' 2021-07-14T20:26:12,272 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testClustering.py' 2021-07-14T20:26:12,273 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testDensityCalculator.py' 2021-07-14T20:26:12,275 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testSpawning.py' 2021-07-14T20:26:12,276 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testThresholdcalculator.py' 2021-07-14T20:26:12,278 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/__init__.py' 2021-07-14T20:26:12,279 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/clusteringUtilities.py' 2021-07-14T20:26:12,281 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/utilities.py' 2021-07-14T20:26:12,283 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/__init__.py' 2021-07-14T20:26:12,285 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/controlFileValidator.py' 2021-07-14T20:26:12,286 adding 'frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/validatorBlockNames.py' 2021-07-14T20:26:12,288 adding 'frag_pele/Analysis/__init__.py' 2021-07-14T20:26:12,290 adding 'frag_pele/Analysis/analyser.py' 2021-07-14T20:26:12,291 adding 'frag_pele/Analysis/forcefield_analysis.py' 2021-07-14T20:26:12,293 adding 'frag_pele/Analysis/get_plots.py' 2021-07-14T20:26:12,295 adding 'frag_pele/Analysis/interaction_detector.py' 2021-07-14T20:26:12,297 adding 'frag_pele/Analysis/output_files.py' 2021-07-14T20:26:12,299 adding 'frag_pele/Analysis/rmsd_computer.py' 2021-07-14T20:26:12,301 adding 'frag_pele/Analysis/sidecahins_analyser.py' 2021-07-14T20:26:12,303 adding 'frag_pele/Banner/Detector.py' 2021-07-14T20:26:12,304 adding 'frag_pele/Banner/__init__.py' 2021-07-14T20:26:12,306 adding 'frag_pele/Growing/__init__.py' 2021-07-14T20:26:12,310 adding 'frag_pele/Growing/add_fragment_from_pdbs.py' 2021-07-14T20:26:12,313 adding 'frag_pele/Growing/bestStructs.py' 2021-07-14T20:26:12,314 adding 'frag_pele/Growing/simulations_linker.py' 2021-07-14T20:26:12,317 adding 'frag_pele/Growing/template_fragmenter.py' 2021-07-14T20:26:12,319 adding 'frag_pele/Growing/template_selector.py' 2021-07-14T20:26:12,321 adding 'frag_pele/Growing/AddingFragHelpers/__init__.py' 2021-07-14T20:26:12,322 adding 'frag_pele/Growing/AddingFragHelpers/complex_to_prody.py' 2021-07-14T20:26:12,324 adding 'frag_pele/Growing/AddingFragHelpers/pdb_joiner.py' 2021-07-14T20:26:12,326 adding 'frag_pele/Helpers/__init__.py' 2021-07-14T20:26:12,327 adding 'frag_pele/Helpers/center_of_mass.py' 2021-07-14T20:26:12,329 adding 'frag_pele/Helpers/check_constants.py' 2021-07-14T20:26:12,330 adding 'frag_pele/Helpers/checker.py' 2021-07-14T20:26:12,331 adding 'frag_pele/Helpers/clusterizer.py' 2021-07-14T20:26:12,333 adding 'frag_pele/Helpers/constraints.py' 2021-07-14T20:26:12,334 adding 'frag_pele/Helpers/correct_fragment_names.py' 2021-07-14T20:26:12,336 adding 'frag_pele/Helpers/folder_handler.py' 2021-07-14T20:26:12,337 adding 'frag_pele/Helpers/helpers.py' 2021-07-14T20:26:12,339 adding 'frag_pele/Helpers/runner.py' 2021-07-14T20:26:12,340 adding 'frag_pele/Helpers/templatize.py' 2021-07-14T20:26:12,357 adding 'frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py' 2021-07-14T20:26:12,359 adding 'frag_pele/PlopRotTemp_S_2017/__init__.py' 2021-07-14T20:26:12,360 adding 'frag_pele/PlopRotTemp_S_2017/ligand_prep.py' 2021-07-14T20:26:12,363 adding 'frag_pele/PlopRotTemp_S_2017/main.py' 2021-07-14T20:26:12,365 adding 'frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param' 2021-07-14T20:26:12,380 adding 'frag_pele/PlopRotTemp_S_2017/param/params.cov' 2021-07-14T20:26:12,384 adding 'frag_pele/PlopRotTemp_S_2017/param/params.nb' 2021-07-14T20:26:12,386 adding 'frag_pele/PlopRotTemp_S_2017/param/sgbnp.param' 2021-07-14T20:26:12,390 adding 'frag_pele/PlopRotTemp_S_2017/param/similarity.param' 2021-07-14T20:26:12,392 adding 'frag_pele/PlopRotTemp_S_2017/template/__init__.py' 2021-07-14T20:26:12,393 adding 'frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py' 2021-07-14T20:26:12,397 adding 'frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py' 2021-07-14T20:26:12,399 adding 'frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py' 2021-07-14T20:26:12,401 adding 'frag_pele/Templates/constants.py' 2021-07-14T20:26:12,402 adding 'frag_pele/Templates/control_template.conf' 2021-07-14T20:26:12,404 adding 'frag_pele-1.1.0.4.dist-info/METADATA' 2021-07-14T20:26:12,405 adding 'frag_pele-1.1.0.4.dist-info/WHEEL' 2021-07-14T20:26:12,406 adding 'frag_pele-1.1.0.4.dist-info/top_level.txt' 2021-07-14T20:26:12,409 adding 'frag_pele-1.1.0.4.dist-info/RECORD' 2021-07-14T20:26:12,435 removing build/bdist.linux-armv7l/wheel 2021-07-14T20:26:12,933 Building wheel for frag-pele (setup.py): finished with status 'done' 2021-07-14T20:26:12,954 Created wheel for frag-pele: filename=frag_pele-1.1.0.4-cp39-cp39-linux_armv7l.whl size=1446839 sha256=fded52cf53bcd8944e76b691093e2fbd3f031d25dc750aa82083161a65b2c358 2021-07-14T20:26:12,954 Stored in directory: /tmp/pip-ephem-wheel-cache-fz0kvqrx/wheels/ce/4e/c3/09501931da5d27c7f54c842683db897b59949499cf6e497bce 2021-07-14T20:26:12,970 Successfully built frag-pele 2021-07-14T20:26:13,025 Removed build tracker: '/tmp/pip-req-tracker-9jf6tyn1'