2021-07-14T22:19:35,747 Created temporary directory: /tmp/pip-ephem-wheel-cache-9wq7al4n
2021-07-14T22:19:35,750 Created temporary directory: /tmp/pip-req-tracker-wv_6lcvz
2021-07-14T22:19:35,751 Initialized build tracking at /tmp/pip-req-tracker-wv_6lcvz
2021-07-14T22:19:35,751 Created build tracker: /tmp/pip-req-tracker-wv_6lcvz
2021-07-14T22:19:35,751 Entered build tracker: /tmp/pip-req-tracker-wv_6lcvz
2021-07-14T22:19:35,752 Created temporary directory: /tmp/pip-wheel-jqemxw_c
2021-07-14T22:19:35,784 1 location(s) to search for versions of denovonear:
2021-07-14T22:19:35,784 * https://pypi.org/simple/denovonear/
2021-07-14T22:19:35,785 Fetching project page and analyzing links: https://pypi.org/simple/denovonear/
2021-07-14T22:19:35,785 Getting page https://pypi.org/simple/denovonear/
2021-07-14T22:19:35,787 Found index url https://pypi.org/simple
2021-07-14T22:19:35,980   Found link https://files.pythonhosted.org/packages/5f/25/aa72bf3769052c8002b830283a8bbacb2cd6e1a2a22c12ee9859022fece0/denovonear-0.5.0.tar.gz#sha256=a321123c913a0bde2c209e574d064032a65007545c9fe8f49ec2f0ea64c91e94 (from https://pypi.org/simple/denovonear/), version: 0.5.0
2021-07-14T22:19:35,980   Found link https://files.pythonhosted.org/packages/0a/62/5608d43d65589a21a7f6b725ec78fcce289da0e725280b7d874f8ddbe3ad/denovonear-0.5.1.tar.gz#sha256=c3c7922d17f3f1b7173077428b0721fb4d0c45fcc242b7d75a2c766c0f9a1853 (from https://pypi.org/simple/denovonear/), version: 0.5.1
2021-07-14T22:19:35,981   Found link https://files.pythonhosted.org/packages/75/b3/535a16bff66cb3cb259afae1d4e1003258b4cb4af7bc81c7b2c76adc6ff2/denovonear-0.5.2.tar.gz#sha256=c949e557ddf9691e6b48f00208f6e37f5d4d249ee8089873c6775fe67d20f661 (from https://pypi.org/simple/denovonear/), version: 0.5.2
2021-07-14T22:19:35,981   Found link https://files.pythonhosted.org/packages/38/f3/215256488f842106a640294ec42b9fe1fe4f7a7e8748b7ff6ac0374a717e/denovonear-0.5.3.tar.gz#sha256=da55e20be91e97f9a1bd83be32284afd89923d54113b00b1fe9295cbcbf662bc (from https://pypi.org/simple/denovonear/), version: 0.5.3
2021-07-14T22:19:35,981   Found link https://files.pythonhosted.org/packages/0a/ec/c9f261454f065ec4284084deffa852884382211030834ea1d29a785892de/denovonear-0.5.4.tar.gz#sha256=fa9333c246d3db5abe98d79be6bd4eeb5354e45f08421bebf7fe4f8c30ff5649 (from https://pypi.org/simple/denovonear/), version: 0.5.4
2021-07-14T22:19:35,982   Found link https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 (from https://pypi.org/simple/denovonear/), version: 0.6.0
2021-07-14T22:19:35,982   Found link https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 (from https://pypi.org/simple/denovonear/), version: 0.6.2
2021-07-14T22:19:35,982   Found link https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe (from https://pypi.org/simple/denovonear/), version: 0.6.3
2021-07-14T22:19:35,982   Found link https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 (from https://pypi.org/simple/denovonear/), version: 0.6.4
2021-07-14T22:19:35,983   Found link https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 (from https://pypi.org/simple/denovonear/), version: 0.7.0
2021-07-14T22:19:35,986   Found link https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.0
2021-07-14T22:19:35,987   Found link https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.1
2021-07-14T22:19:35,988   Found link https://files.pythonhosted.org/packages/ef/b4/e860d4a4ead9864f588d6a02e1d5f5f4faa83f7c90991c5665d0161cbd55/denovonear-0.8.2.tar.gz#sha256=9ad038ee99c90af080e3fe968015ab78f9d869474b65ec95dedcf63cdee8b05f (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.2
2021-07-14T22:19:35,988   Found link https://files.pythonhosted.org/packages/a8/fb/8601613cae1e1165ca87dd3f39442ae6f72768d1854cf05fc91fe54c74e3/denovonear-0.8.4.tar.gz#sha256=f725d7598a6470a5bff613253d1b7ebdf844c0ce592dfe31015e38e530e90be1 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.4
2021-07-14T22:19:35,989   Found link https://files.pythonhosted.org/packages/5e/40/6235d5a69a1954d94ffd5fe8db17ae0825866255cc69b8caf3057df33ec3/denovonear-0.8.5.tar.gz#sha256=dd656b8b43f511e26e701f7301b39f8c151893aab015f1f581ddc0a9a2ae5c13 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.5
2021-07-14T22:19:35,989   Found link https://files.pythonhosted.org/packages/51/a0/1e7699fe5b5a6ab27d2916c14ff76000d8026f85a668b1b50c7b51cdf187/denovonear-0.8.6.tar.gz#sha256=3241bfa633f723687359aa8928e7a68a82d2ffaac6eb6ce090401d9c6357fa2e (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.6
2021-07-14T22:19:35,990 Skipping link: not a file: https://pypi.org/simple/denovonear/
2021-07-14T22:19:36,009 Given no hashes to check 1 links for project 'denovonear': discarding no candidates
2021-07-14T22:19:36,029 Collecting denovonear==0.8.0
2021-07-14T22:19:36,031   Created temporary directory: /tmp/pip-unpack-j2keg08f
2021-07-14T22:19:36,258   Downloading denovonear-0.8.0.tar.gz (214 kB)
2021-07-14T22:19:36,722   Added denovonear==0.8.0 from https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d to build tracker '/tmp/pip-req-tracker-wv_6lcvz'
2021-07-14T22:19:36,723     Running setup.py (path:/tmp/pip-wheel-jqemxw_c/denovonear_bb3ad9ca01f04e8da98db862cabdba38/setup.py) egg_info for package denovonear
2021-07-14T22:19:36,723     Created temporary directory: /tmp/pip-pip-egg-info-8ufc_0gy
2021-07-14T22:19:36,724     Running command python setup.py egg_info
2021-07-14T22:19:41,988     Compiling denovonear/weights.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-14T22:19:41,989     Compiling denovonear/transcript.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-14T22:19:41,989     Compiling denovonear/site_specific_rates.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-14T22:19:41,989     [1/3] Cythonizing denovonear/site_specific_rates.pyx
2021-07-14T22:19:41,989     [2/3] Cythonizing denovonear/weights.pyx
2021-07-14T22:19:41,990     [3/3] Cythonizing denovonear/transcript.pyx
2021-07-14T22:19:42,195     running egg_info
2021-07-14T22:19:42,198     creating /tmp/pip-pip-egg-info-8ufc_0gy/denovonear.egg-info
2021-07-14T22:19:42,199     writing /tmp/pip-pip-egg-info-8ufc_0gy/denovonear.egg-info/PKG-INFO
2021-07-14T22:19:42,202     writing dependency_links to /tmp/pip-pip-egg-info-8ufc_0gy/denovonear.egg-info/dependency_links.txt
2021-07-14T22:19:42,203     writing entry points to /tmp/pip-pip-egg-info-8ufc_0gy/denovonear.egg-info/entry_points.txt
2021-07-14T22:19:42,205     writing requirements to /tmp/pip-pip-egg-info-8ufc_0gy/denovonear.egg-info/requires.txt
2021-07-14T22:19:42,206     writing top-level names to /tmp/pip-pip-egg-info-8ufc_0gy/denovonear.egg-info/top_level.txt
2021-07-14T22:19:42,208     writing manifest file '/tmp/pip-pip-egg-info-8ufc_0gy/denovonear.egg-info/SOURCES.txt'
2021-07-14T22:19:42,400     reading manifest file '/tmp/pip-pip-egg-info-8ufc_0gy/denovonear.egg-info/SOURCES.txt'
2021-07-14T22:19:42,402     reading manifest template 'MANIFEST.in'
2021-07-14T22:19:42,418     writing manifest file '/tmp/pip-pip-egg-info-8ufc_0gy/denovonear.egg-info/SOURCES.txt'
2021-07-14T22:19:42,624   Source in /tmp/pip-wheel-jqemxw_c/denovonear_bb3ad9ca01f04e8da98db862cabdba38 has version 0.8.0, which satisfies requirement denovonear==0.8.0 from https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d
2021-07-14T22:19:42,625   Removed denovonear==0.8.0 from https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d from build tracker '/tmp/pip-req-tracker-wv_6lcvz'
2021-07-14T22:19:42,632 Created temporary directory: /tmp/pip-unpack-6qhbgi20
2021-07-14T22:19:42,633 Building wheels for collected packages: denovonear
2021-07-14T22:19:42,637   Created temporary directory: /tmp/pip-wheel-3wj3tb9m
2021-07-14T22:19:42,637   Building wheel for denovonear (setup.py): started
2021-07-14T22:19:42,638   Destination directory: /tmp/pip-wheel-3wj3tb9m
2021-07-14T22:19:42,638   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jqemxw_c/denovonear_bb3ad9ca01f04e8da98db862cabdba38/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jqemxw_c/denovonear_bb3ad9ca01f04e8da98db862cabdba38/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3wj3tb9m
2021-07-14T22:19:44,655   running bdist_wheel
2021-07-14T22:19:44,661   running build
2021-07-14T22:19:44,661   running build_py
2021-07-14T22:19:44,826   creating build
2021-07-14T22:19:44,826   creating build/lib.linux-armv7l-3.9
2021-07-14T22:19:44,827   creating build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,828   copying denovonear/simulate.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,831   copying denovonear/ensembl_cache.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,833   copying denovonear/rate_limiter_retries.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,835   copying denovonear/load_mutation_rates.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,837   copying denovonear/load_de_novos.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,839   copying denovonear/rate_limiter.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,841   copying denovonear/ensembl_requester.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,844   copying denovonear/frameshift_rate.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,845   copying denovonear/__init__.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,847   copying denovonear/__main__.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,850   copying denovonear/cluster_test.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,852   copying denovonear/load_gene.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,854   copying denovonear/log_transform_rates.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,858   creating build/lib.linux-armv7l-3.9/denovonear/data
2021-07-14T22:19:44,859   copying denovonear/data/rates.txt -> build/lib.linux-armv7l-3.9/denovonear/data
2021-07-14T22:19:44,862   copying denovonear/weights.pxd -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,866   running build_ext
2021-07-14T22:19:44,873   building 'denovonear.weights' extension
2021-07-14T22:19:44,873   creating build/temp.linux-armv7l-3.9
2021-07-14T22:19:44,874   creating build/temp.linux-armv7l-3.9/denovonear
2021-07-14T22:19:44,875   creating build/temp.linux-armv7l-3.9/src
2021-07-14T22:19:44,876   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/weights.cpp -o build/temp.linux-armv7l-3.9/denovonear/weights.o -std=c++11
2021-07-14T22:19:51,583   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/simulate.cpp -o build/temp.linux-armv7l-3.9/src/simulate.o -std=c++11
2021-07-14T22:19:53,207   In file included from /usr/include/c++/10/bits/stl_algo.h:61,
2021-07-14T22:19:53,207                    from /usr/include/c++/10/algorithm:62,
2021-07-14T22:19:53,207                    from src/simulate.cpp:2:
2021-07-14T22:19:53,208   /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2021-07-14T22:19:53,208   /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,208     223 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
2021-07-14T22:19:53,208         |     ^~~~~~~~~~~~~
2021-07-14T22:19:53,245   In file included from /usr/include/c++/10/algorithm:62,
2021-07-14T22:19:53,245                    from src/simulate.cpp:2:
2021-07-14T22:19:53,245   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2021-07-14T22:19:53,245   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,246    1839 |     __insertion_sort(_RandomAccessIterator __first,
2021-07-14T22:19:53,246         |     ^~~~~~~~~~~~~~~~
2021-07-14T22:19:53,246   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,246   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,288   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2021-07-14T22:19:53,288   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,289    1945 |     __introsort_loop(_RandomAccessIterator __first,
2021-07-14T22:19:53,289         |     ^~~~~~~~~~~~~~~~
2021-07-14T22:19:53,289   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,289   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,289   /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,289    1959 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
2021-07-14T22:19:53,290         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:53,510   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:19:53,510                    from src/simulate.cpp:4:
2021-07-14T22:19:53,510   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:19:53,510   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:19:53,511     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:19:53,511         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:53,586   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<double> _simulate_distribution(Chooser&, int, int)’:
2021-07-14T22:19:53,586   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,586     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:19:53,587         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:53,587   In file included from /usr/include/c++/10/algorithm:62,
2021-07-14T22:19:53,587                    from src/simulate.cpp:2:
2021-07-14T22:19:53,587   /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,587    1974 |    std::__introsort_loop(__first, __last,
2021-07-14T22:19:53,587         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-07-14T22:19:53,587    1975 |     std::__lg(__last - __first) * 2,
2021-07-14T22:19:53,588         |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:53,588    1976 |     __comp);
2021-07-14T22:19:53,588         |     ~~~~~~~
2021-07-14T22:19:53,588   /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,588    1886 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
2021-07-14T22:19:53,588         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:53,588   /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:53,588    1891 |  std::__insertion_sort(__first, __last, __comp);
2021-07-14T22:19:53,589         |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:54,115   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11
2021-07-14T22:19:55,921   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:19:55,921                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:19:55,921                    from /usr/include/c++/10/random:49,
2021-07-14T22:19:55,921                    from src/weighted_choice.cpp:1:
2021-07-14T22:19:55,922   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:19:55,922   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:19:55,922     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:19:55,922         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:55,992   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-14T22:19:55,992   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-14T22:19:56,131   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-14T22:19:56,131   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-14T22:19:56,257   In file included from /usr/include/c++/10/vector:67,
2021-07-14T22:19:56,257                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:19:56,258                    from /usr/include/c++/10/random:49,
2021-07-14T22:19:56,258                    from src/weighted_choice.cpp:1:
2021-07-14T22:19:56,258   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’:
2021-07-14T22:19:56,258   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:56,258    1198 |    _M_realloc_insert(end(), __x);
2021-07-14T22:19:56,258         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-14T22:19:56,259   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:19:56,259                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:19:56,259                    from /usr/include/c++/10/random:49,
2021-07-14T22:19:56,259                    from src/weighted_choice.cpp:1:
2021-07-14T22:19:56,259   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-14T22:19:56,259     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:19:56,260         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:56,342   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:19:56,342   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:19:56,342     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:19:56,343         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:56,395   /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’:
2021-07-14T22:19:56,396   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:19:56,396     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:19:56,396         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:19:56,397   In file included from /usr/include/c++/10/vector:67,
2021-07-14T22:19:56,397                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:19:56,397                    from /usr/include/c++/10/random:49,
2021-07-14T22:19:56,397                    from src/weighted_choice.cpp:1:
2021-07-14T22:19:56,397   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-14T22:19:56,397    1198 |    _M_realloc_insert(end(), __x);
2021-07-14T22:19:56,397         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-14T22:19:56,740   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/weights.o build/temp.linux-armv7l-3.9/src/simulate.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so
2021-07-14T22:19:57,084   building 'denovonear.transcript' extension
2021-07-14T22:19:57,085   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/transcript.cpp -o build/temp.linux-armv7l-3.9/denovonear/transcript.o -std=c++11
2021-07-14T22:20:16,346   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11
2021-07-14T22:20:25,130   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/transcript.o build/temp.linux-armv7l-3.9/src/tx.o -o build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so
2021-07-14T22:20:25,553   building 'denovonear.site_specific_rates' extension
2021-07-14T22:20:25,554   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/site_specific_rates.cpp -o build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o -std=c++11
2021-07-14T22:20:37,359   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/site_rates.cpp -o build/temp.linux-armv7l-3.9/src/site_rates.o -std=c++11
2021-07-14T22:20:43,496   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11
2021-07-14T22:20:52,225   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11
2021-07-14T22:20:54,028   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:20:54,029                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:20:54,029                    from /usr/include/c++/10/random:49,
2021-07-14T22:20:54,029                    from src/weighted_choice.cpp:1:
2021-07-14T22:20:54,029   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:20:54,029   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:20:54,029     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:20:54,029         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:54,101   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-14T22:20:54,101   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-14T22:20:54,241   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-14T22:20:54,241   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-14T22:20:54,368   In file included from /usr/include/c++/10/vector:67,
2021-07-14T22:20:54,368                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:20:54,368                    from /usr/include/c++/10/random:49,
2021-07-14T22:20:54,368                    from src/weighted_choice.cpp:1:
2021-07-14T22:20:54,368   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’:
2021-07-14T22:20:54,368   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:54,368    1198 |    _M_realloc_insert(end(), __x);
2021-07-14T22:20:54,368         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-14T22:20:54,370   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:20:54,371                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:20:54,371                    from /usr/include/c++/10/random:49,
2021-07-14T22:20:54,371                    from src/weighted_choice.cpp:1:
2021-07-14T22:20:54,371   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-14T22:20:54,371     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:20:54,371         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:54,454   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:20:54,455   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:20:54,455     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:20:54,455         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:54,508   /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’:
2021-07-14T22:20:54,508   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:54,508     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:20:54,508         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:54,509   In file included from /usr/include/c++/10/vector:67,
2021-07-14T22:20:54,509                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:20:54,509                    from /usr/include/c++/10/random:49,
2021-07-14T22:20:54,509                    from src/weighted_choice.cpp:1:
2021-07-14T22:20:54,510   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-14T22:20:54,510    1198 |    _M_realloc_insert(end(), __x);
2021-07-14T22:20:54,510         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-14T22:20:54,847   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o build/temp.linux-armv7l-3.9/src/site_rates.o build/temp.linux-armv7l-3.9/src/tx.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so
2021-07-14T22:20:55,366   installing to build/bdist.linux-armv7l/wheel
2021-07-14T22:20:55,366   running install
2021-07-14T22:20:55,368   running install_lib
2021-07-14T22:20:55,373   creating build/bdist.linux-armv7l
2021-07-14T22:20:55,373   creating build/bdist.linux-armv7l/wheel
2021-07-14T22:20:55,375   creating build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,377   copying build/lib.linux-armv7l-3.9/denovonear/simulate.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,379   copying build/lib.linux-armv7l-3.9/denovonear/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,382   copying build/lib.linux-armv7l-3.9/denovonear/rate_limiter_retries.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,384   copying build/lib.linux-armv7l-3.9/denovonear/load_mutation_rates.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,386   copying build/lib.linux-armv7l-3.9/denovonear/load_de_novos.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,388   copying build/lib.linux-armv7l-3.9/denovonear/rate_limiter.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,390   copying build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,454   copying build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,529   copying build/lib.linux-armv7l-3.9/denovonear/ensembl_requester.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,532   creating build/bdist.linux-armv7l/wheel/denovonear/data
2021-07-14T22:20:55,533   copying build/lib.linux-armv7l-3.9/denovonear/data/rates.txt -> build/bdist.linux-armv7l/wheel/denovonear/data
2021-07-14T22:20:55,535   copying build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,566   copying build/lib.linux-armv7l-3.9/denovonear/weights.pxd -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,568   copying build/lib.linux-armv7l-3.9/denovonear/frameshift_rate.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,570   copying build/lib.linux-armv7l-3.9/denovonear/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,571   copying build/lib.linux-armv7l-3.9/denovonear/__main__.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,574   copying build/lib.linux-armv7l-3.9/denovonear/cluster_test.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,576   copying build/lib.linux-armv7l-3.9/denovonear/load_gene.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,578   copying build/lib.linux-armv7l-3.9/denovonear/log_transform_rates.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:20:55,580   running install_egg_info
2021-07-14T22:20:55,609   running egg_info
2021-07-14T22:20:55,610   writing denovonear.egg-info/PKG-INFO
2021-07-14T22:20:55,613   writing dependency_links to denovonear.egg-info/dependency_links.txt
2021-07-14T22:20:55,615   writing entry points to denovonear.egg-info/entry_points.txt
2021-07-14T22:20:55,616   writing requirements to denovonear.egg-info/requires.txt
2021-07-14T22:20:55,617   writing top-level names to denovonear.egg-info/top_level.txt
2021-07-14T22:20:55,660   reading manifest file 'denovonear.egg-info/SOURCES.txt'
2021-07-14T22:20:55,668   reading manifest template 'MANIFEST.in'
2021-07-14T22:20:55,683   writing manifest file 'denovonear.egg-info/SOURCES.txt'
2021-07-14T22:20:55,685   Copying denovonear.egg-info to build/bdist.linux-armv7l/wheel/denovonear-0.8.0-py3.9.egg-info
2021-07-14T22:20:55,699   running install_scripts
2021-07-14T22:20:55,753   creating build/bdist.linux-armv7l/wheel/denovonear-0.8.0.dist-info/WHEEL
2021-07-14T22:20:55,756   creating '/tmp/pip-wheel-3wj3tb9m/denovonear-0.8.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T22:20:55,759   adding 'denovonear/__init__.py'
2021-07-14T22:20:55,761   adding 'denovonear/__main__.py'
2021-07-14T22:20:55,763   adding 'denovonear/cluster_test.py'
2021-07-14T22:20:55,765   adding 'denovonear/ensembl_cache.py'
2021-07-14T22:20:55,766   adding 'denovonear/ensembl_requester.py'
2021-07-14T22:20:55,768   adding 'denovonear/frameshift_rate.py'
2021-07-14T22:20:55,769   adding 'denovonear/load_de_novos.py'
2021-07-14T22:20:55,771   adding 'denovonear/load_gene.py'
2021-07-14T22:20:55,773   adding 'denovonear/load_mutation_rates.py'
2021-07-14T22:20:55,774   adding 'denovonear/log_transform_rates.py'
2021-07-14T22:20:55,775   adding 'denovonear/rate_limiter.py'
2021-07-14T22:20:55,777   adding 'denovonear/rate_limiter_retries.py'
2021-07-14T22:20:55,778   adding 'denovonear/simulate.py'
2021-07-14T22:20:56,319   adding 'denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T22:20:56,818   adding 'denovonear/transcript.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T22:20:57,030   adding 'denovonear/weights.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T22:20:57,039   adding 'denovonear/weights.pxd'
2021-07-14T22:20:57,041   adding 'denovonear/data/rates.txt'
2021-07-14T22:20:57,043   adding 'denovonear-0.8.0.dist-info/METADATA'
2021-07-14T22:20:57,045   adding 'denovonear-0.8.0.dist-info/WHEEL'
2021-07-14T22:20:57,046   adding 'denovonear-0.8.0.dist-info/entry_points.txt'
2021-07-14T22:20:57,046   adding 'denovonear-0.8.0.dist-info/top_level.txt'
2021-07-14T22:20:57,047   adding 'denovonear-0.8.0.dist-info/RECORD'
2021-07-14T22:20:57,080   removing build/bdist.linux-armv7l/wheel
2021-07-14T22:20:57,208   Building wheel for denovonear (setup.py): finished with status 'done'
2021-07-14T22:20:57,241   Created wheel for denovonear: filename=denovonear-0.8.0-cp39-cp39-linux_armv7l.whl size=2267860 sha256=e83d2b8e97649d271619bcf0800c88d534766e1dad8a055a71ad3fd18ea9b7ac
2021-07-14T22:20:57,242   Stored in directory: /tmp/pip-ephem-wheel-cache-9wq7al4n/wheels/72/23/fe/f8e7d10c89dcad8bd3d4f5f5970e9d1ddf020ba41af91da58e
2021-07-14T22:20:57,253 Successfully built denovonear
2021-07-14T22:20:57,330 Removed build tracker: '/tmp/pip-req-tracker-wv_6lcvz'