2021-07-14T22:20:08,428 Created temporary directory: /tmp/pip-ephem-wheel-cache-zj881atj
2021-07-14T22:20:08,431 Created temporary directory: /tmp/pip-req-tracker-04ob_o98
2021-07-14T22:20:08,431 Initialized build tracking at /tmp/pip-req-tracker-04ob_o98
2021-07-14T22:20:08,432 Created build tracker: /tmp/pip-req-tracker-04ob_o98
2021-07-14T22:20:08,432 Entered build tracker: /tmp/pip-req-tracker-04ob_o98
2021-07-14T22:20:08,432 Created temporary directory: /tmp/pip-wheel-kho67fxa
2021-07-14T22:20:08,462 1 location(s) to search for versions of denovonear:
2021-07-14T22:20:08,462 * https://pypi.org/simple/denovonear/
2021-07-14T22:20:08,463 Fetching project page and analyzing links: https://pypi.org/simple/denovonear/
2021-07-14T22:20:08,464 Getting page https://pypi.org/simple/denovonear/
2021-07-14T22:20:08,466 Found index url https://pypi.org/simple
2021-07-14T22:20:08,561   Found link https://files.pythonhosted.org/packages/5f/25/aa72bf3769052c8002b830283a8bbacb2cd6e1a2a22c12ee9859022fece0/denovonear-0.5.0.tar.gz#sha256=a321123c913a0bde2c209e574d064032a65007545c9fe8f49ec2f0ea64c91e94 (from https://pypi.org/simple/denovonear/), version: 0.5.0
2021-07-14T22:20:08,561   Found link https://files.pythonhosted.org/packages/0a/62/5608d43d65589a21a7f6b725ec78fcce289da0e725280b7d874f8ddbe3ad/denovonear-0.5.1.tar.gz#sha256=c3c7922d17f3f1b7173077428b0721fb4d0c45fcc242b7d75a2c766c0f9a1853 (from https://pypi.org/simple/denovonear/), version: 0.5.1
2021-07-14T22:20:08,561   Found link https://files.pythonhosted.org/packages/75/b3/535a16bff66cb3cb259afae1d4e1003258b4cb4af7bc81c7b2c76adc6ff2/denovonear-0.5.2.tar.gz#sha256=c949e557ddf9691e6b48f00208f6e37f5d4d249ee8089873c6775fe67d20f661 (from https://pypi.org/simple/denovonear/), version: 0.5.2
2021-07-14T22:20:08,562   Found link https://files.pythonhosted.org/packages/38/f3/215256488f842106a640294ec42b9fe1fe4f7a7e8748b7ff6ac0374a717e/denovonear-0.5.3.tar.gz#sha256=da55e20be91e97f9a1bd83be32284afd89923d54113b00b1fe9295cbcbf662bc (from https://pypi.org/simple/denovonear/), version: 0.5.3
2021-07-14T22:20:08,562   Found link https://files.pythonhosted.org/packages/0a/ec/c9f261454f065ec4284084deffa852884382211030834ea1d29a785892de/denovonear-0.5.4.tar.gz#sha256=fa9333c246d3db5abe98d79be6bd4eeb5354e45f08421bebf7fe4f8c30ff5649 (from https://pypi.org/simple/denovonear/), version: 0.5.4
2021-07-14T22:20:08,562   Found link https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 (from https://pypi.org/simple/denovonear/), version: 0.6.0
2021-07-14T22:20:08,563   Found link https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 (from https://pypi.org/simple/denovonear/), version: 0.6.2
2021-07-14T22:20:08,563   Found link https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe (from https://pypi.org/simple/denovonear/), version: 0.6.3
2021-07-14T22:20:08,563   Found link https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 (from https://pypi.org/simple/denovonear/), version: 0.6.4
2021-07-14T22:20:08,564   Found link https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 (from https://pypi.org/simple/denovonear/), version: 0.7.0
2021-07-14T22:20:08,564   Found link https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.0
2021-07-14T22:20:08,565   Found link https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.1
2021-07-14T22:20:08,566   Found link https://files.pythonhosted.org/packages/ef/b4/e860d4a4ead9864f588d6a02e1d5f5f4faa83f7c90991c5665d0161cbd55/denovonear-0.8.2.tar.gz#sha256=9ad038ee99c90af080e3fe968015ab78f9d869474b65ec95dedcf63cdee8b05f (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.2
2021-07-14T22:20:08,566   Found link https://files.pythonhosted.org/packages/a8/fb/8601613cae1e1165ca87dd3f39442ae6f72768d1854cf05fc91fe54c74e3/denovonear-0.8.4.tar.gz#sha256=f725d7598a6470a5bff613253d1b7ebdf844c0ce592dfe31015e38e530e90be1 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.4
2021-07-14T22:20:08,567   Found link https://files.pythonhosted.org/packages/5e/40/6235d5a69a1954d94ffd5fe8db17ae0825866255cc69b8caf3057df33ec3/denovonear-0.8.5.tar.gz#sha256=dd656b8b43f511e26e701f7301b39f8c151893aab015f1f581ddc0a9a2ae5c13 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.5
2021-07-14T22:20:08,567   Found link https://files.pythonhosted.org/packages/51/a0/1e7699fe5b5a6ab27d2916c14ff76000d8026f85a668b1b50c7b51cdf187/denovonear-0.8.6.tar.gz#sha256=3241bfa633f723687359aa8928e7a68a82d2ffaac6eb6ce090401d9c6357fa2e (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.6
2021-07-14T22:20:08,568 Skipping link: not a file: https://pypi.org/simple/denovonear/
2021-07-14T22:20:08,587 Given no hashes to check 1 links for project 'denovonear': discarding no candidates
2021-07-14T22:20:08,610 Collecting denovonear==0.8.1
2021-07-14T22:20:08,611   Created temporary directory: /tmp/pip-unpack-wd5119ew
2021-07-14T22:20:08,816   Downloading denovonear-0.8.1.tar.gz (214 kB)
2021-07-14T22:20:09,052   Added denovonear==0.8.1 from https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576 to build tracker '/tmp/pip-req-tracker-04ob_o98'
2021-07-14T22:20:09,053     Running setup.py (path:/tmp/pip-wheel-kho67fxa/denovonear_1bfad7f5c1184d69a024dc08955018ff/setup.py) egg_info for package denovonear
2021-07-14T22:20:09,054     Created temporary directory: /tmp/pip-pip-egg-info-1qe5otuk
2021-07-14T22:20:09,055     Running command python setup.py egg_info
2021-07-14T22:20:14,009     Compiling denovonear/weights.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-14T22:20:14,010     Compiling denovonear/transcript.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-14T22:20:14,011     Compiling denovonear/site_specific_rates.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-14T22:20:14,011     [1/3] Cythonizing denovonear/site_specific_rates.pyx
2021-07-14T22:20:14,011     [2/3] Cythonizing denovonear/weights.pyx
2021-07-14T22:20:14,011     [3/3] Cythonizing denovonear/transcript.pyx
2021-07-14T22:20:14,215     running egg_info
2021-07-14T22:20:14,219     creating /tmp/pip-pip-egg-info-1qe5otuk/denovonear.egg-info
2021-07-14T22:20:14,222     writing /tmp/pip-pip-egg-info-1qe5otuk/denovonear.egg-info/PKG-INFO
2021-07-14T22:20:14,225     writing dependency_links to /tmp/pip-pip-egg-info-1qe5otuk/denovonear.egg-info/dependency_links.txt
2021-07-14T22:20:14,228     writing entry points to /tmp/pip-pip-egg-info-1qe5otuk/denovonear.egg-info/entry_points.txt
2021-07-14T22:20:14,232     writing requirements to /tmp/pip-pip-egg-info-1qe5otuk/denovonear.egg-info/requires.txt
2021-07-14T22:20:14,235     writing top-level names to /tmp/pip-pip-egg-info-1qe5otuk/denovonear.egg-info/top_level.txt
2021-07-14T22:20:14,238     writing manifest file '/tmp/pip-pip-egg-info-1qe5otuk/denovonear.egg-info/SOURCES.txt'
2021-07-14T22:20:14,436     reading manifest file '/tmp/pip-pip-egg-info-1qe5otuk/denovonear.egg-info/SOURCES.txt'
2021-07-14T22:20:14,439     reading manifest template 'MANIFEST.in'
2021-07-14T22:20:14,457     writing manifest file '/tmp/pip-pip-egg-info-1qe5otuk/denovonear.egg-info/SOURCES.txt'
2021-07-14T22:20:14,661   Source in /tmp/pip-wheel-kho67fxa/denovonear_1bfad7f5c1184d69a024dc08955018ff has version 0.8.1, which satisfies requirement denovonear==0.8.1 from https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576
2021-07-14T22:20:14,663   Removed denovonear==0.8.1 from https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576 from build tracker '/tmp/pip-req-tracker-04ob_o98'
2021-07-14T22:20:14,669 Created temporary directory: /tmp/pip-unpack-s_8zie82
2021-07-14T22:20:14,670 Building wheels for collected packages: denovonear
2021-07-14T22:20:14,674   Created temporary directory: /tmp/pip-wheel-z88215ph
2021-07-14T22:20:14,675   Building wheel for denovonear (setup.py): started
2021-07-14T22:20:14,675   Destination directory: /tmp/pip-wheel-z88215ph
2021-07-14T22:20:14,676   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-kho67fxa/denovonear_1bfad7f5c1184d69a024dc08955018ff/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-kho67fxa/denovonear_1bfad7f5c1184d69a024dc08955018ff/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-z88215ph
2021-07-14T22:20:16,636   running bdist_wheel
2021-07-14T22:20:16,643   running build
2021-07-14T22:20:16,643   running build_py
2021-07-14T22:20:16,809   creating build
2021-07-14T22:20:16,810   creating build/lib.linux-armv7l-3.9
2021-07-14T22:20:16,811   creating build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,812   copying denovonear/load_mutation_rates.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,815   copying denovonear/__main__.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,818   copying denovonear/log_transform_rates.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,820   copying denovonear/simulate.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,822   copying denovonear/frameshift_rate.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,825   copying denovonear/rate_limiter_retries.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,827   copying denovonear/rate_limiter.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,829   copying denovonear/ensembl_requester.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,831   copying denovonear/load_de_novos.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,834   copying denovonear/__init__.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,836   copying denovonear/load_gene.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,839   copying denovonear/ensembl_cache.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,842   copying denovonear/cluster_test.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,845   creating build/lib.linux-armv7l-3.9/denovonear/data
2021-07-14T22:20:16,847   copying denovonear/data/rates.txt -> build/lib.linux-armv7l-3.9/denovonear/data
2021-07-14T22:20:16,850   copying denovonear/weights.pxd -> build/lib.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,854   running build_ext
2021-07-14T22:20:16,861   building 'denovonear.weights' extension
2021-07-14T22:20:16,862   creating build/temp.linux-armv7l-3.9
2021-07-14T22:20:16,863   creating build/temp.linux-armv7l-3.9/denovonear
2021-07-14T22:20:16,864   creating build/temp.linux-armv7l-3.9/src
2021-07-14T22:20:16,865   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/weights.cpp -o build/temp.linux-armv7l-3.9/denovonear/weights.o -std=c++11
2021-07-14T22:20:23,547   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/simulate.cpp -o build/temp.linux-armv7l-3.9/src/simulate.o -std=c++11
2021-07-14T22:20:25,170   In file included from /usr/include/c++/10/bits/stl_algo.h:61,
2021-07-14T22:20:25,170                    from /usr/include/c++/10/algorithm:62,
2021-07-14T22:20:25,170                    from src/simulate.cpp:2:
2021-07-14T22:20:25,170   /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2021-07-14T22:20:25,170   /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,171     223 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
2021-07-14T22:20:25,171         |     ^~~~~~~~~~~~~
2021-07-14T22:20:25,207   In file included from /usr/include/c++/10/algorithm:62,
2021-07-14T22:20:25,207                    from src/simulate.cpp:2:
2021-07-14T22:20:25,207   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2021-07-14T22:20:25,208   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,208    1839 |     __insertion_sort(_RandomAccessIterator __first,
2021-07-14T22:20:25,208         |     ^~~~~~~~~~~~~~~~
2021-07-14T22:20:25,208   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,208   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,250   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2021-07-14T22:20:25,251   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,251    1945 |     __introsort_loop(_RandomAccessIterator __first,
2021-07-14T22:20:25,251         |     ^~~~~~~~~~~~~~~~
2021-07-14T22:20:25,251   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,251   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,252   /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,252    1959 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
2021-07-14T22:20:25,252         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:25,473   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:20:25,473                    from src/simulate.cpp:4:
2021-07-14T22:20:25,473   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:20:25,473   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:20:25,474     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:20:25,474         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:25,550   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<double> _simulate_distribution(Chooser&, int, int)’:
2021-07-14T22:20:25,550   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,550     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:20:25,550         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:25,551   In file included from /usr/include/c++/10/algorithm:62,
2021-07-14T22:20:25,551                    from src/simulate.cpp:2:
2021-07-14T22:20:25,551   /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,551    1974 |    std::__introsort_loop(__first, __last,
2021-07-14T22:20:25,551         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-07-14T22:20:25,551    1975 |     std::__lg(__last - __first) * 2,
2021-07-14T22:20:25,551         |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:25,552    1976 |     __comp);
2021-07-14T22:20:25,552         |     ~~~~~~~
2021-07-14T22:20:25,552   /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,552    1886 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
2021-07-14T22:20:25,552         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:25,552   /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:25,552    1891 |  std::__insertion_sort(__first, __last, __comp);
2021-07-14T22:20:25,552         |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:26,083   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11
2021-07-14T22:20:27,868   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:20:27,868                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:20:27,868                    from /usr/include/c++/10/random:49,
2021-07-14T22:20:27,868                    from src/weighted_choice.cpp:1:
2021-07-14T22:20:27,868   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:20:27,868   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:20:27,868     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:20:27,869         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:27,940   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-14T22:20:27,940   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-14T22:20:28,080   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-14T22:20:28,080   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-14T22:20:28,206   In file included from /usr/include/c++/10/vector:67,
2021-07-14T22:20:28,206                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:20:28,207                    from /usr/include/c++/10/random:49,
2021-07-14T22:20:28,207                    from src/weighted_choice.cpp:1:
2021-07-14T22:20:28,207   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’:
2021-07-14T22:20:28,207   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:28,207    1198 |    _M_realloc_insert(end(), __x);
2021-07-14T22:20:28,207         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-14T22:20:28,209   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:20:28,209                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:20:28,209                    from /usr/include/c++/10/random:49,
2021-07-14T22:20:28,210                    from src/weighted_choice.cpp:1:
2021-07-14T22:20:28,210   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-14T22:20:28,210     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:20:28,210         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:28,293   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:20:28,293   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:20:28,293     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:20:28,294         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:28,347   /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’:
2021-07-14T22:20:28,347   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:20:28,347     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:20:28,347         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:20:28,348   In file included from /usr/include/c++/10/vector:67,
2021-07-14T22:20:28,348                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:20:28,349                    from /usr/include/c++/10/random:49,
2021-07-14T22:20:28,349                    from src/weighted_choice.cpp:1:
2021-07-14T22:20:28,349   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-14T22:20:28,349    1198 |    _M_realloc_insert(end(), __x);
2021-07-14T22:20:28,349         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-14T22:20:28,683   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/weights.o build/temp.linux-armv7l-3.9/src/simulate.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so
2021-07-14T22:20:29,024   building 'denovonear.transcript' extension
2021-07-14T22:20:29,024   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/transcript.cpp -o build/temp.linux-armv7l-3.9/denovonear/transcript.o -std=c++11
2021-07-14T22:20:48,280   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11
2021-07-14T22:20:57,123   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/transcript.o build/temp.linux-armv7l-3.9/src/tx.o -o build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so
2021-07-14T22:20:57,580   building 'denovonear.site_specific_rates' extension
2021-07-14T22:20:57,581   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/site_specific_rates.cpp -o build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o -std=c++11
2021-07-14T22:21:09,536   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/site_rates.cpp -o build/temp.linux-armv7l-3.9/src/site_rates.o -std=c++11
2021-07-14T22:21:15,678   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11
2021-07-14T22:21:24,544   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11
2021-07-14T22:21:26,334   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:21:26,334                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:21:26,334                    from /usr/include/c++/10/random:49,
2021-07-14T22:21:26,334                    from src/weighted_choice.cpp:1:
2021-07-14T22:21:26,335   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:21:26,335   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:21:26,335     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:21:26,335         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:21:26,405   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-14T22:21:26,405   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-14T22:21:26,544   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-14T22:21:26,544   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-14T22:21:26,670   In file included from /usr/include/c++/10/vector:67,
2021-07-14T22:21:26,670                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:21:26,671                    from /usr/include/c++/10/random:49,
2021-07-14T22:21:26,671                    from src/weighted_choice.cpp:1:
2021-07-14T22:21:26,671   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’:
2021-07-14T22:21:26,671   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:21:26,671    1198 |    _M_realloc_insert(end(), __x);
2021-07-14T22:21:26,671         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-14T22:21:26,672   In file included from /usr/include/c++/10/vector:72,
2021-07-14T22:21:26,672                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:21:26,672                    from /usr/include/c++/10/random:49,
2021-07-14T22:21:26,672                    from src/weighted_choice.cpp:1:
2021-07-14T22:21:26,672   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-14T22:21:26,672     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:21:26,673         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:21:26,755   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-14T22:21:26,755   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-14T22:21:26,755     426 |       vector<_Tp, _Alloc>::
2021-07-14T22:21:26,756         |       ^~~~~~~~~~~~~~~~~~~
2021-07-14T22:21:26,808   /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’:
2021-07-14T22:21:26,808   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-14T22:21:26,809     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-14T22:21:26,809         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-14T22:21:26,809   In file included from /usr/include/c++/10/vector:67,
2021-07-14T22:21:26,810                    from /usr/include/c++/10/bits/random.h:34,
2021-07-14T22:21:26,810                    from /usr/include/c++/10/random:49,
2021-07-14T22:21:26,810                    from src/weighted_choice.cpp:1:
2021-07-14T22:21:26,810   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-14T22:21:26,810    1198 |    _M_realloc_insert(end(), __x);
2021-07-14T22:21:26,810         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-14T22:21:27,139   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o build/temp.linux-armv7l-3.9/src/site_rates.o build/temp.linux-armv7l-3.9/src/tx.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so
2021-07-14T22:21:27,657   installing to build/bdist.linux-armv7l/wheel
2021-07-14T22:21:27,657   running install
2021-07-14T22:21:27,659   running install_lib
2021-07-14T22:21:27,664   creating build/bdist.linux-armv7l
2021-07-14T22:21:27,665   creating build/bdist.linux-armv7l/wheel
2021-07-14T22:21:27,667   creating build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,669   copying build/lib.linux-armv7l-3.9/denovonear/load_mutation_rates.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,671   copying build/lib.linux-armv7l-3.9/denovonear/__main__.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,675   copying build/lib.linux-armv7l-3.9/denovonear/log_transform_rates.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,678   copying build/lib.linux-armv7l-3.9/denovonear/simulate.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,681   copying build/lib.linux-armv7l-3.9/denovonear/frameshift_rate.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,683   copying build/lib.linux-armv7l-3.9/denovonear/rate_limiter_retries.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,686   copying build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,751   copying build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,774   copying build/lib.linux-armv7l-3.9/denovonear/rate_limiter.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,776   copying build/lib.linux-armv7l-3.9/denovonear/ensembl_requester.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,779   copying build/lib.linux-armv7l-3.9/denovonear/load_de_novos.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,781   copying build/lib.linux-armv7l-3.9/denovonear/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,783   copying build/lib.linux-armv7l-3.9/denovonear/load_gene.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,786   creating build/bdist.linux-armv7l/wheel/denovonear/data
2021-07-14T22:21:27,787   copying build/lib.linux-armv7l-3.9/denovonear/data/rates.txt -> build/bdist.linux-armv7l/wheel/denovonear/data
2021-07-14T22:21:27,790   copying build/lib.linux-armv7l-3.9/denovonear/weights.pxd -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,792   copying build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,870   copying build/lib.linux-armv7l-3.9/denovonear/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,872   copying build/lib.linux-armv7l-3.9/denovonear/cluster_test.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-14T22:21:27,875   running install_egg_info
2021-07-14T22:21:27,902   running egg_info
2021-07-14T22:21:27,903   writing denovonear.egg-info/PKG-INFO
2021-07-14T22:21:27,906   writing dependency_links to denovonear.egg-info/dependency_links.txt
2021-07-14T22:21:27,909   writing entry points to denovonear.egg-info/entry_points.txt
2021-07-14T22:21:27,910   writing requirements to denovonear.egg-info/requires.txt
2021-07-14T22:21:27,912   writing top-level names to denovonear.egg-info/top_level.txt
2021-07-14T22:21:27,956   reading manifest file 'denovonear.egg-info/SOURCES.txt'
2021-07-14T22:21:27,964   reading manifest template 'MANIFEST.in'
2021-07-14T22:21:27,980   writing manifest file 'denovonear.egg-info/SOURCES.txt'
2021-07-14T22:21:27,982   Copying denovonear.egg-info to build/bdist.linux-armv7l/wheel/denovonear-0.8.1-py3.9.egg-info
2021-07-14T22:21:27,998   running install_scripts
2021-07-14T22:21:28,051   creating build/bdist.linux-armv7l/wheel/denovonear-0.8.1.dist-info/WHEEL
2021-07-14T22:21:28,055   creating '/tmp/pip-wheel-z88215ph/denovonear-0.8.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-14T22:21:28,059   adding 'denovonear/__init__.py'
2021-07-14T22:21:28,062   adding 'denovonear/__main__.py'
2021-07-14T22:21:28,064   adding 'denovonear/cluster_test.py'
2021-07-14T22:21:28,066   adding 'denovonear/ensembl_cache.py'
2021-07-14T22:21:28,068   adding 'denovonear/ensembl_requester.py'
2021-07-14T22:21:28,071   adding 'denovonear/frameshift_rate.py'
2021-07-14T22:21:28,073   adding 'denovonear/load_de_novos.py'
2021-07-14T22:21:28,075   adding 'denovonear/load_gene.py'
2021-07-14T22:21:28,077   adding 'denovonear/load_mutation_rates.py'
2021-07-14T22:21:28,079   adding 'denovonear/log_transform_rates.py'
2021-07-14T22:21:28,081   adding 'denovonear/rate_limiter.py'
2021-07-14T22:21:28,082   adding 'denovonear/rate_limiter_retries.py'
2021-07-14T22:21:28,084   adding 'denovonear/simulate.py'
2021-07-14T22:21:28,627   adding 'denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T22:21:29,127   adding 'denovonear/transcript.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T22:21:29,340   adding 'denovonear/weights.cpython-39-arm-linux-gnueabihf.so'
2021-07-14T22:21:29,350   adding 'denovonear/weights.pxd'
2021-07-14T22:21:29,353   adding 'denovonear/data/rates.txt'
2021-07-14T22:21:29,356   adding 'denovonear-0.8.1.dist-info/METADATA'
2021-07-14T22:21:29,357   adding 'denovonear-0.8.1.dist-info/WHEEL'
2021-07-14T22:21:29,358   adding 'denovonear-0.8.1.dist-info/entry_points.txt'
2021-07-14T22:21:29,359   adding 'denovonear-0.8.1.dist-info/top_level.txt'
2021-07-14T22:21:29,360   adding 'denovonear-0.8.1.dist-info/RECORD'
2021-07-14T22:21:29,398   removing build/bdist.linux-armv7l/wheel
2021-07-14T22:21:29,528   Building wheel for denovonear (setup.py): finished with status 'done'
2021-07-14T22:21:29,559   Created wheel for denovonear: filename=denovonear-0.8.1-cp39-cp39-linux_armv7l.whl size=2267602 sha256=86262a99c22ca99867c4897958c7a1a2a989caa457e9bd275a995ba3b5f1d2d2
2021-07-14T22:21:29,559   Stored in directory: /tmp/pip-ephem-wheel-cache-zj881atj/wheels/85/27/77/d0ae2eeef4a739fd6a8f4e60dcc000f8e7a3494f25c7f37215
2021-07-14T22:21:29,570 Successfully built denovonear
2021-07-14T22:21:29,656 Removed build tracker: '/tmp/pip-req-tracker-04ob_o98'