2021-07-14T22:26:30,270 Created temporary directory: /tmp/pip-ephem-wheel-cache-jxgr16q6 2021-07-14T22:26:30,273 Created temporary directory: /tmp/pip-req-tracker-35edjak4 2021-07-14T22:26:30,273 Initialized build tracking at /tmp/pip-req-tracker-35edjak4 2021-07-14T22:26:30,273 Created build tracker: /tmp/pip-req-tracker-35edjak4 2021-07-14T22:26:30,273 Entered build tracker: /tmp/pip-req-tracker-35edjak4 2021-07-14T22:26:30,274 Created temporary directory: /tmp/pip-wheel-86anfmf8 2021-07-14T22:26:30,310 1 location(s) to search for versions of molmod: 2021-07-14T22:26:30,310 * https://pypi.org/simple/molmod/ 2021-07-14T22:26:30,310 Fetching project page and analyzing links: https://pypi.org/simple/molmod/ 2021-07-14T22:26:30,311 Getting page https://pypi.org/simple/molmod/ 2021-07-14T22:26:30,313 Found index url https://pypi.org/simple 2021-07-14T22:26:30,509 Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1 2021-07-14T22:26:30,510 Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0 2021-07-14T22:26:30,510 Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1 2021-07-14T22:26:30,510 Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2 2021-07-14T22:26:30,511 Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3 2021-07-14T22:26:30,511 Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4 2021-07-14T22:26:30,511 Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5 2021-07-14T22:26:30,512 Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0 2021-07-14T22:26:30,512 Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1 2021-07-14T22:26:30,512 Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2 2021-07-14T22:26:30,512 Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3 2021-07-14T22:26:30,513 Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4 2021-07-14T22:26:30,513 Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5 2021-07-14T22:26:30,513 Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6 2021-07-14T22:26:30,514 Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7 2021-07-14T22:26:30,514 Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8 2021-07-14T22:26:30,514 Skipping link: not a file: https://pypi.org/simple/molmod/ 2021-07-14T22:26:30,534 Given no hashes to check 1 links for project 'molmod': discarding no candidates 2021-07-14T22:26:30,556 Collecting molmod==1.4.5 2021-07-14T22:26:30,557 Created temporary directory: /tmp/pip-unpack-ly_gprk_ 2021-07-14T22:26:31,298 Downloading molmod-1.4.5.tar.gz (1.7 MB) 2021-07-14T22:26:32,313 Added molmod==1.4.5 from https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 to build tracker '/tmp/pip-req-tracker-35edjak4' 2021-07-14T22:26:32,314 Running setup.py (path:/tmp/pip-wheel-86anfmf8/molmod_b4733d2c06f742009e61dfb8e6700d92/setup.py) egg_info for package molmod 2021-07-14T22:26:32,315 Created temporary directory: /tmp/pip-pip-egg-info-k1s_kusg 2021-07-14T22:26:32,315 Running command python setup.py egg_info 2021-07-14T22:26:33,967 fatal: not a git repository (or any of the parent directories): .git 2021-07-14T22:26:34,199 Trying to get the version from git describe 2021-07-14T22:26:34,200 Trying to get the version from {} /tmp/pip-wheel-86anfmf8/molmod_b4733d2c06f742009e61dfb8e6700d92/molmod/version.py 2021-07-14T22:26:34,200 Version according to /tmp/pip-wheel-86anfmf8/molmod_b4733d2c06f742009e61dfb8e6700d92/molmod/version.py: 1.4.5 2021-07-14T22:26:34,200 running egg_info 2021-07-14T22:26:34,202 creating /tmp/pip-pip-egg-info-k1s_kusg/molmod.egg-info 2021-07-14T22:26:34,203 writing /tmp/pip-pip-egg-info-k1s_kusg/molmod.egg-info/PKG-INFO 2021-07-14T22:26:34,206 writing dependency_links to /tmp/pip-pip-egg-info-k1s_kusg/molmod.egg-info/dependency_links.txt 2021-07-14T22:26:34,208 writing requirements to /tmp/pip-pip-egg-info-k1s_kusg/molmod.egg-info/requires.txt 2021-07-14T22:26:34,210 writing top-level names to /tmp/pip-pip-egg-info-k1s_kusg/molmod.egg-info/top_level.txt 2021-07-14T22:26:34,212 writing manifest file '/tmp/pip-pip-egg-info-k1s_kusg/molmod.egg-info/SOURCES.txt' 2021-07-14T22:26:34,438 reading manifest file '/tmp/pip-pip-egg-info-k1s_kusg/molmod.egg-info/SOURCES.txt' 2021-07-14T22:26:34,441 reading manifest template 'MANIFEST.in' 2021-07-14T22:26:34,907 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-14T22:26:34,978 adding license file 'LICENSE.txt' 2021-07-14T22:26:34,990 writing manifest file '/tmp/pip-pip-egg-info-k1s_kusg/molmod.egg-info/SOURCES.txt' 2021-07-14T22:26:35,113 Source in /tmp/pip-wheel-86anfmf8/molmod_b4733d2c06f742009e61dfb8e6700d92 has version 1.4.5, which satisfies requirement molmod==1.4.5 from https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 2021-07-14T22:26:35,114 Removed molmod==1.4.5 from https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 from build tracker '/tmp/pip-req-tracker-35edjak4' 2021-07-14T22:26:35,118 Created temporary directory: /tmp/pip-unpack-qsops1m2 2021-07-14T22:26:35,119 Building wheels for collected packages: molmod 2021-07-14T22:26:35,123 Created temporary directory: /tmp/pip-wheel-t3cf0pky 2021-07-14T22:26:35,124 Building wheel for molmod (setup.py): started 2021-07-14T22:26:35,124 Destination directory: /tmp/pip-wheel-t3cf0pky 2021-07-14T22:26:35,124 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-86anfmf8/molmod_b4733d2c06f742009e61dfb8e6700d92/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-86anfmf8/molmod_b4733d2c06f742009e61dfb8e6700d92/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-t3cf0pky 2021-07-14T22:26:36,688 Trying to get the version from git describe 2021-07-14T22:26:36,699 fatal: not a git repository (or any of the parent directories): .git 2021-07-14T22:26:36,700 Trying to get the version from {} /tmp/pip-wheel-86anfmf8/molmod_b4733d2c06f742009e61dfb8e6700d92/molmod/version.py 2021-07-14T22:26:36,700 Version according to /tmp/pip-wheel-86anfmf8/molmod_b4733d2c06f742009e61dfb8e6700d92/molmod/version.py: 1.4.5 2021-07-14T22:26:36,934 running bdist_wheel 2021-07-14T22:26:36,940 running build 2021-07-14T22:26:36,940 running build_py 2021-07-14T22:26:37,101 creating build 2021-07-14T22:26:37,102 creating build/lib.linux-armv7l-3.9 2021-07-14T22:26:37,103 creating build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,104 copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,107 copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,109 copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,111 copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,114 copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,118 copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,120 copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,123 copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,126 copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,130 copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,135 copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,138 copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,144 copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,147 copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,149 copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,152 copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,156 copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,158 copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,161 copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,164 copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,166 copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,169 copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,172 copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,174 copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,177 copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,180 copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,184 creating build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,185 copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,188 copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,191 copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,193 copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,196 copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,198 copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,200 copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,202 copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,205 copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,209 copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,211 copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,214 copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,217 copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,221 copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,224 copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,227 copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,231 copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,234 copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,237 copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,240 copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,242 copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,244 copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,247 copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,250 copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-14T22:26:37,254 creating build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,256 copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,260 copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,263 copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,266 copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,269 copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,272 copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,276 copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,278 copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,281 copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,285 copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,288 copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,292 copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,297 copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,300 copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,303 copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,306 copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,308 copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,311 copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,314 copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-14T22:26:37,319 creating build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,320 copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,323 copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,325 copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,328 copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,330 copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,332 copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,334 copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,337 copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,339 copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,342 copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,344 copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,346 copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,348 copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,351 copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,353 copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,355 copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,357 copying molmod/io/test/test_chk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,360 copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-14T22:26:37,362 running egg_info 2021-07-14T22:26:37,378 writing molmod.egg-info/PKG-INFO 2021-07-14T22:26:37,380 writing dependency_links to molmod.egg-info/dependency_links.txt 2021-07-14T22:26:37,382 writing requirements to molmod.egg-info/requires.txt 2021-07-14T22:26:37,383 writing top-level names to molmod.egg-info/top_level.txt 2021-07-14T22:26:37,431 reading manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-14T22:26:37,440 reading manifest template 'MANIFEST.in' 2021-07-14T22:26:37,876 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-14T22:26:37,937 adding license file 'LICENSE.txt' 2021-07-14T22:26:37,951 writing manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-14T22:26:37,968 copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,970 copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,973 copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,976 copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,978 copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,980 copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,983 copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,985 copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,988 copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,990 copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,992 copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,995 copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,997 copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:37,999 copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:38,002 copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:38,004 copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:38,007 copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:38,009 copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-14T22:26:38,011 creating build/lib.linux-armv7l-3.9/molmod/data 2021-07-14T22:26:38,012 copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-14T22:26:38,015 copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-14T22:26:38,018 copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-14T22:26:38,032 copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-14T22:26:38,055 copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-14T22:26:38,058 copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-14T22:26:38,061 copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-14T22:26:38,065 creating build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,066 copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,070 copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,086 copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,088 copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,090 copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,093 copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,116 copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,119 copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,121 copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,124 copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,127 copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,130 copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,133 copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,136 copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,139 copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,142 copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,145 copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,149 copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,153 copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,156 copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,168 copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,171 copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,174 copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,178 copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,193 copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,196 copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,199 copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,202 copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,205 copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,210 copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,213 copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,217 copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,220 copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,224 copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,230 copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,233 copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,236 copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,239 copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,253 copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,257 copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,260 copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,263 copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,266 copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,269 copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,272 copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,276 copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,279 copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,283 copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,289 copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,293 copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,296 copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,299 copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,303 copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,314 copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,318 copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,322 copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,324 copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,327 copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,330 copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,333 copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,336 copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-14T22:26:38,339 creating build/lib.linux-armv7l-3.9/molmod/examples 2021-07-14T22:26:38,340 creating build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-14T22:26:38,342 copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-14T22:26:38,345 copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-14T22:26:38,348 copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-14T22:26:38,351 creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-14T22:26:38,352 copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-14T22:26:38,355 copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-14T22:26:38,358 copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-14T22:26:38,361 copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-14T22:26:38,364 copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-14T22:26:38,368 copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-14T22:26:38,371 creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-14T22:26:38,373 copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-14T22:26:38,376 copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-14T22:26:38,379 copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-14T22:26:38,382 copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-14T22:26:38,385 copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-14T22:26:38,388 copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-14T22:26:38,391 creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-14T22:26:38,392 copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-14T22:26:38,395 copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-14T22:26:38,398 copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-14T22:26:38,402 copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-14T22:26:38,407 copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-14T22:26:38,411 copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-14T22:26:38,414 copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-14T22:26:38,417 creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-14T22:26:38,418 copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-14T22:26:38,421 copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-14T22:26:38,424 copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-14T22:26:38,427 copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-14T22:26:38,431 copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-14T22:26:38,442 running build_ext 2021-07-14T22:26:38,449 cythoning molmod/ext.pyx to molmod/ext.c 2021-07-14T22:26:39,065 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-86anfmf8/molmod_b4733d2c06f742009e61dfb8e6700d92/molmod/ext.pyx 2021-07-14T22:26:39,066 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T22:26:46,449 building 'molmod.ext' extension 2021-07-14T22:26:46,450 creating build/temp.linux-armv7l-3.9 2021-07-14T22:26:46,451 creating build/temp.linux-armv7l-3.9/molmod 2021-07-14T22:26:46,452 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o 2021-07-14T22:26:46,697 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o 2021-07-14T22:26:47,097 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T22:26:47,097 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T22:26:47,097 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T22:26:47,097 from molmod/ext.c:612: 2021-07-14T22:26:47,097 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T22:26:47,098 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T22:26:47,098 | ^~~~~~~ 2021-07-14T22:26:47,182 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’: 2021-07-14T22:26:47,184 molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,184 2923 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-14T22:26:47,184 | ^~ 2021-07-14T22:26:47,185 molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,186 2929 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-14T22:26:47,186 | ^~ 2021-07-14T22:26:47,187 molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,187 2963 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); 2021-07-14T22:26:47,187 | ^~ 2021-07-14T22:26:47,188 molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,189 2969 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); 2021-07-14T22:26:47,189 | ^~ 2021-07-14T22:26:47,225 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’: 2021-07-14T22:26:47,227 molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,227 3679 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); 2021-07-14T22:26:47,227 | ^~ 2021-07-14T22:26:47,229 molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,229 3711 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-14T22:26:47,229 | ^~ 2021-07-14T22:26:47,231 molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,231 3717 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-14T22:26:47,231 | ^~ 2021-07-14T22:26:47,277 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’: 2021-07-14T22:26:47,279 molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,279 4583 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-14T22:26:47,279 | ^~ 2021-07-14T22:26:47,327 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’: 2021-07-14T22:26:47,329 molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,330 5327 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-14T22:26:47,330 | ^~ 2021-07-14T22:26:47,378 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’: 2021-07-14T22:26:47,381 molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,381 5858 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); 2021-07-14T22:26:47,381 | ^~ 2021-07-14T22:26:47,440 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’: 2021-07-14T22:26:47,444 molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-14T22:26:47,444 6700 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); 2021-07-14T22:26:47,444 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:26:47,444 In file included from molmod/ext.c:623: 2021-07-14T22:26:47,444 molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’ 2021-07-14T22:26:47,445 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); 2021-07-14T22:26:47,445 | ~~~~~~^~~~~~ 2021-07-14T22:26:47,446 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’: 2021-07-14T22:26:47,449 molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,450 6831 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); 2021-07-14T22:26:47,450 | ^~ 2021-07-14T22:26:47,464 molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-14T22:26:47,464 6929 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); 2021-07-14T22:26:47,465 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:26:47,465 In file included from molmod/ext.c:623: 2021-07-14T22:26:47,465 molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’ 2021-07-14T22:26:47,465 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); 2021-07-14T22:26:47,465 | ~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-14T22:26:47,472 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’: 2021-07-14T22:26:47,475 molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,475 7185 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); 2021-07-14T22:26:47,475 | ^~ 2021-07-14T22:26:47,480 molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-14T22:26:47,480 7249 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); 2021-07-14T22:26:47,480 | ^~ 2021-07-14T22:27:03,673 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o 2021-07-14T22:27:04,008 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o 2021-07-14T22:27:04,139 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o 2021-07-14T22:27:04,302 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o 2021-07-14T22:27:04,545 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o 2021-07-14T22:27:04,899 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:27:05,092 installing to build/bdist.linux-armv7l/wheel 2021-07-14T22:27:05,092 running install 2021-07-14T22:27:05,093 running install_lib 2021-07-14T22:27:05,099 creating build/bdist.linux-armv7l 2021-07-14T22:27:05,100 creating build/bdist.linux-armv7l/wheel 2021-07-14T22:27:05,103 creating build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,104 copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,106 copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,109 copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,111 copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,113 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,116 creating build/bdist.linux-armv7l/wheel/molmod/examples 2021-07-14T22:27:05,118 creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-14T22:27:05,119 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-14T22:27:05,121 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-14T22:27:05,123 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-14T22:27:05,127 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-14T22:27:05,129 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-14T22:27:05,132 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-14T22:27:05,135 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-14T22:27:05,138 creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-14T22:27:05,139 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-14T22:27:05,142 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-14T22:27:05,144 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-14T22:27:05,147 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-14T22:27:05,149 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-14T22:27:05,151 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-14T22:27:05,154 creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-14T22:27:05,155 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-14T22:27:05,157 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-14T22:27:05,159 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-14T22:27:05,161 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-14T22:27:05,163 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-14T22:27:05,165 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-14T22:27:05,168 creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-14T22:27:05,169 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-14T22:27:05,172 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-14T22:27:05,174 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-14T22:27:05,177 creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-14T22:27:05,178 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-14T22:27:05,180 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-14T22:27:05,183 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-14T22:27:05,185 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-14T22:27:05,187 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-14T22:27:05,189 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,191 copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,195 copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,198 copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,200 copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,203 copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,206 copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,208 copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,212 copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,217 copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,220 copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,226 copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,228 copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,231 copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,234 copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,236 copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,239 copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,243 copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,246 copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,248 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,250 copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,253 creating build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,255 copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,257 copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,261 copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,264 copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,266 copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,269 copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,271 copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,274 copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,277 copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,280 copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,283 copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,287 copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,289 copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,292 copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,295 copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,298 copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,302 copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,305 copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,307 copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-14T22:27:05,311 creating build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,311 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,314 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,316 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,318 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,320 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,323 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,326 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,329 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,332 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,335 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,337 copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,339 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,342 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,345 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,347 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,349 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,351 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_chk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,354 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-14T22:27:05,356 copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,358 copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,360 copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,363 copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,366 copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,368 copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,371 copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,375 creating build/bdist.linux-armv7l/wheel/molmod/data 2021-07-14T22:27:05,376 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-14T22:27:05,378 copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-14T22:27:05,382 copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-14T22:27:05,400 copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-14T22:27:05,412 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-14T22:27:05,414 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-14T22:27:05,417 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-14T22:27:05,422 creating build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,422 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,425 copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,428 copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,430 copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,433 copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,435 copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,438 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,440 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,444 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,447 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,465 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,467 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,470 copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,476 copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,478 copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,480 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,482 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,484 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,486 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,488 copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,501 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,504 copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,506 copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,508 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,510 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,512 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,515 copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,517 copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,519 copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,521 copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,523 copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,525 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,527 copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,530 copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,532 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,535 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,537 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,540 copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,542 copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,544 copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,547 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,549 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,552 copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,568 copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,570 copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,572 copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,574 copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,576 copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,578 copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,581 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,586 copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,610 copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,614 copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,615 copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,617 copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,621 copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,623 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,625 copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,627 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,629 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,631 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-14T22:27:05,634 copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,637 copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,665 copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,668 copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,670 copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,672 copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,674 copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,676 copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,678 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,681 copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,684 copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,685 copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-14T22:27:05,689 creating build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,690 copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,693 copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,695 copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,698 copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,700 copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,702 copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,705 copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,707 copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,709 copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,713 copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,715 copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,717 copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,720 copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,723 copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,726 copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,729 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,733 copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,735 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,738 copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,740 copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,742 copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,745 copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,748 copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,750 copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-14T22:27:05,752 running install_egg_info 2021-07-14T22:27:05,758 Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.4.5-py3.9.egg-info 2021-07-14T22:27:05,775 running install_scripts 2021-07-14T22:27:05,817 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-14T22:27:05,824 creating build/bdist.linux-armv7l/wheel/molmod-1.4.5.dist-info/WHEEL 2021-07-14T22:27:05,827 creating '/tmp/pip-wheel-t3cf0pky/molmod-1.4.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T22:27:05,831 adding 'molmod/__init__.py' 2021-07-14T22:27:05,833 adding 'molmod/binning.py' 2021-07-14T22:27:05,835 adding 'molmod/bonds.py' 2021-07-14T22:27:05,837 adding 'molmod/clusters.py' 2021-07-14T22:27:05,838 adding 'molmod/common.c' 2021-07-14T22:27:05,840 adding 'molmod/common.h' 2021-07-14T22:27:05,841 adding 'molmod/constants.py' 2021-07-14T22:27:06,064 adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:27:06,075 adding 'molmod/ext.pyx' 2021-07-14T22:27:06,077 adding 'molmod/ff.c' 2021-07-14T22:27:06,078 adding 'molmod/ff.h' 2021-07-14T22:27:06,080 adding 'molmod/ff.pxd' 2021-07-14T22:27:06,081 adding 'molmod/graphs.c' 2021-07-14T22:27:06,082 adding 'molmod/graphs.h' 2021-07-14T22:27:06,083 adding 'molmod/graphs.pxd' 2021-07-14T22:27:06,093 adding 'molmod/graphs.py' 2021-07-14T22:27:06,096 adding 'molmod/ic.py' 2021-07-14T22:27:06,098 adding 'molmod/isotopes.py' 2021-07-14T22:27:06,101 adding 'molmod/log.py' 2021-07-14T22:27:06,109 adding 'molmod/minimizer.py' 2021-07-14T22:27:06,113 adding 'molmod/molecular_graphs.py' 2021-07-14T22:27:06,115 adding 'molmod/molecules.c' 2021-07-14T22:27:06,116 adding 'molmod/molecules.h' 2021-07-14T22:27:06,117 adding 'molmod/molecules.pxd' 2021-07-14T22:27:06,119 adding 'molmod/molecules.py' 2021-07-14T22:27:06,121 adding 'molmod/pairff.py' 2021-07-14T22:27:06,123 adding 'molmod/periodic.py' 2021-07-14T22:27:06,124 adding 'molmod/quaternions.py' 2021-07-14T22:27:06,127 adding 'molmod/randomize.py' 2021-07-14T22:27:06,129 adding 'molmod/similarity.c' 2021-07-14T22:27:06,130 adding 'molmod/similarity.h' 2021-07-14T22:27:06,131 adding 'molmod/similarity.pxd' 2021-07-14T22:27:06,133 adding 'molmod/similarity.py' 2021-07-14T22:27:06,134 adding 'molmod/symmetry.py' 2021-07-14T22:27:06,136 adding 'molmod/toyff.py' 2021-07-14T22:27:06,139 adding 'molmod/transformations.py' 2021-07-14T22:27:06,141 adding 'molmod/unit_cells.c' 2021-07-14T22:27:06,142 adding 'molmod/unit_cells.h' 2021-07-14T22:27:06,144 adding 'molmod/unit_cells.pxd' 2021-07-14T22:27:06,146 adding 'molmod/unit_cells.py' 2021-07-14T22:27:06,148 adding 'molmod/units.py' 2021-07-14T22:27:06,150 adding 'molmod/utils.py' 2021-07-14T22:27:06,152 adding 'molmod/vectors.py' 2021-07-14T22:27:06,153 adding 'molmod/version.py' 2021-07-14T22:27:06,155 adding 'molmod/zmatrix.py' 2021-07-14T22:27:06,157 adding 'molmod/data/bonds.csv' 2021-07-14T22:27:06,159 adding 'molmod/data/bonds.ods' 2021-07-14T22:27:06,244 adding 'molmod/data/mass.mas03' 2021-07-14T22:27:06,329 adding 'molmod/data/nubtab03.asc' 2021-07-14T22:27:06,335 adding 'molmod/data/periodic.csv' 2021-07-14T22:27:06,338 adding 'molmod/data/periodic.ods' 2021-07-14T22:27:06,353 adding 'molmod/data/toyff_angles.txt' 2021-07-14T22:27:06,360 adding 'molmod/data/test/1LJL_Cys10.cml' 2021-07-14T22:27:06,499 adding 'molmod/data/test/1TOH.b3lyp.fchk' 2021-07-14T22:27:06,505 adding 'molmod/data/test/1TOH.b3lyp.trim.fchk' 2021-07-14T22:27:06,506 adding 'molmod/data/test/5ringOH.xyz' 2021-07-14T22:27:06,507 adding 'molmod/data/test/CID_22898828.sdf' 2021-07-14T22:27:06,760 adding 'molmod/data/test/PCGamess_PUNCH' 2021-07-14T22:27:06,769 adding 'molmod/data/test/SID_31646545.sdf' 2021-07-14T22:27:06,770 adding 'molmod/data/test/SID_31646548.sdf' 2021-07-14T22:27:06,771 adding 'molmod/data/test/SID_40363570.sdf' 2021-07-14T22:27:06,773 adding 'molmod/data/test/SID_40363571.sdf' 2021-07-14T22:27:06,774 adding 'molmod/data/test/SID_41893278.sdf' 2021-07-14T22:27:06,775 adding 'molmod/data/test/SID_41893280.sdf' 2021-07-14T22:27:06,777 adding 'molmod/data/test/SID_54258192.sdf' 2021-07-14T22:27:06,778 adding 'molmod/data/test/SID_55127927.sdf' 2021-07-14T22:27:06,780 adding 'molmod/data/test/SID_55488598.sdf' 2021-07-14T22:27:06,781 adding 'molmod/data/test/SID_56274343.sdf' 2021-07-14T22:27:06,782 adding 'molmod/data/test/TRAJECTORY_H2_CPMD' 2021-07-14T22:27:06,786 adding 'molmod/data/test/alanine.cube' 2021-07-14T22:27:06,787 adding 'molmod/data/test/argon.xyz' 2021-07-14T22:27:06,863 adding 'molmod/data/test/bartek.atrj' 2021-07-14T22:27:06,867 adding 'molmod/data/test/benzene.xyz' 2021-07-14T22:27:06,869 adding 'molmod/data/test/butane.xyz' 2021-07-14T22:27:06,870 adding 'molmod/data/test/caplayer.cml' 2021-07-14T22:27:06,937 adding 'molmod/data/test/crystal_api.out' 2021-07-14T22:27:06,942 adding 'molmod/data/test/cyclopentane.xyz' 2021-07-14T22:27:06,943 adding 'molmod/data/test/dinitrogen.xyz' 2021-07-14T22:27:06,944 adding 'molmod/data/test/dlpoly_HISTORY' 2021-07-14T22:27:06,946 adding 'molmod/data/test/dlpoly_HISTORY_an2' 2021-07-14T22:27:06,951 adding 'molmod/data/test/dlpoly_OUTPUT' 2021-07-14T22:27:06,952 adding 'molmod/data/test/dopamine.xyz' 2021-07-14T22:27:06,953 adding 'molmod/data/test/ethane.xyz' 2021-07-14T22:27:06,955 adding 'molmod/data/test/ethene.xyz' 2021-07-14T22:27:06,956 adding 'molmod/data/test/ethene_ethyl_trans.xyz' 2021-07-14T22:27:06,957 adding 'molmod/data/test/example.sdf' 2021-07-14T22:27:06,958 adding 'molmod/data/test/formol.xyz' 2021-07-14T22:27:06,960 adding 'molmod/data/test/funny.xyz' 2021-07-14T22:27:06,961 adding 'molmod/data/test/h3zrosihohosioh3.xyz' 2021-07-14T22:27:06,990 adding 'molmod/data/test/il2.pdb' 2021-07-14T22:27:06,995 adding 'molmod/data/test/lammps_dump.txt' 2021-07-14T22:27:06,996 adding 'molmod/data/test/lau.xyz' 2021-07-14T22:27:06,997 adding 'molmod/data/test/octane.xyz' 2021-07-14T22:27:06,998 adding 'molmod/data/test/oh3siozroh3.xyz' 2021-07-14T22:27:07,000 adding 'molmod/data/test/opt_5ring10T.xyz' 2021-07-14T22:27:07,001 adding 'molmod/data/test/opt_5ring12T.xyz' 2021-07-14T22:27:07,003 adding 'molmod/data/test/opt_6_6ring.xyz' 2021-07-14T22:27:07,004 adding 'molmod/data/test/opt_6ring.xyz' 2021-07-14T22:27:07,006 adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz' 2021-07-14T22:27:07,007 adding 'molmod/data/test/pentapeptide.psf' 2021-07-14T22:27:07,009 adding 'molmod/data/test/precursor.xyz' 2021-07-14T22:27:07,011 adding 'molmod/data/test/probes.xyz' 2021-07-14T22:27:07,012 adding 'molmod/data/test/tea.xyz' 2021-07-14T22:27:07,013 adding 'molmod/data/test/tetra.xyz' 2021-07-14T22:27:07,034 adding 'molmod/data/test/thf.psf' 2021-07-14T22:27:07,042 adding 'molmod/data/test/thf.xyz' 2021-07-14T22:27:07,044 adding 'molmod/data/test/thf_64.cell' 2021-07-14T22:27:07,045 adding 'molmod/data/test/thf_single.xyz' 2021-07-14T22:27:07,047 adding 'molmod/data/test/tpa.xyz' 2021-07-14T22:27:07,048 adding 'molmod/data/test/water.xyz' 2021-07-14T22:27:07,049 adding 'molmod/data/test/water2.gro' 2021-07-14T22:27:07,050 adding 'molmod/data/test/water_md.inp' 2021-07-14T22:27:07,051 adding 'molmod/data/test/zr4o8-3.xyz' 2021-07-14T22:27:07,053 adding 'molmod/examples/000_units/a_reaction.py' 2021-07-14T22:27:07,055 adding 'molmod/examples/000_units/b_chbond.py' 2021-07-14T22:27:07,056 adding 'molmod/examples/000_units/c_h2rot.py' 2021-07-14T22:27:07,058 adding 'molmod/examples/001_molecules/a_convert.py' 2021-07-14T22:27:07,059 adding 'molmod/examples/001_molecules/b_com.py' 2021-07-14T22:27:07,060 adding 'molmod/examples/001_molecules/c_carbon.py' 2021-07-14T22:27:07,062 adding 'molmod/examples/001_molecules/d_size.py' 2021-07-14T22:27:07,063 adding 'molmod/examples/001_molecules/e_shape.py' 2021-07-14T22:27:07,064 adding 'molmod/examples/001_molecules/ibuprofen.sdf' 2021-07-14T22:27:07,067 adding 'molmod/examples/002_graphs/a_graphs.py' 2021-07-14T22:27:07,068 adding 'molmod/examples/002_graphs/b_neighbors.py' 2021-07-14T22:27:07,069 adding 'molmod/examples/002_graphs/c_distances.py' 2021-07-14T22:27:07,071 adding 'molmod/examples/002_graphs/caffeine.xyz' 2021-07-14T22:27:07,072 adding 'molmod/examples/002_graphs/d_symmetries.py' 2021-07-14T22:27:07,073 adding 'molmod/examples/002_graphs/ethanol.xyz' 2021-07-14T22:27:07,075 adding 'molmod/examples/003_internal_coordinates/a_bond_length.py' 2021-07-14T22:27:07,077 adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py' 2021-07-14T22:27:07,078 adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py' 2021-07-14T22:27:07,080 adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py' 2021-07-14T22:27:07,090 adding 'molmod/examples/003_internal_coordinates/dopamine.fchk' 2021-07-14T22:27:07,091 adding 'molmod/examples/003_internal_coordinates/dopamine.xyz' 2021-07-14T22:27:07,093 adding 'molmod/examples/003_internal_coordinates/propane.xyz' 2021-07-14T22:27:07,095 adding 'molmod/examples/004_patterns/a_propane_types.py' 2021-07-14T22:27:07,096 adding 'molmod/examples/004_patterns/b_dopamine_types.py' 2021-07-14T22:27:07,097 adding 'molmod/examples/004_patterns/dopamine.xyz' 2021-07-14T22:27:07,099 adding 'molmod/examples/004_patterns/mfi_fragment.xyz' 2021-07-14T22:27:07,100 adding 'molmod/examples/004_patterns/propane.xyz' 2021-07-14T22:27:07,103 adding 'molmod/io/__init__.py' 2021-07-14T22:27:07,104 adding 'molmod/io/atrj.py' 2021-07-14T22:27:07,106 adding 'molmod/io/chk.py' 2021-07-14T22:27:07,108 adding 'molmod/io/cml.py' 2021-07-14T22:27:07,110 adding 'molmod/io/common.py' 2021-07-14T22:27:07,112 adding 'molmod/io/cp2k.py' 2021-07-14T22:27:07,114 adding 'molmod/io/cpmd.py' 2021-07-14T22:27:07,115 adding 'molmod/io/crystal.py' 2021-07-14T22:27:07,117 adding 'molmod/io/cube.py' 2021-07-14T22:27:07,119 adding 'molmod/io/dlpoly.py' 2021-07-14T22:27:07,121 adding 'molmod/io/fchk.py' 2021-07-14T22:27:07,123 adding 'molmod/io/gamess.py' 2021-07-14T22:27:07,125 adding 'molmod/io/gromacs.py' 2021-07-14T22:27:07,126 adding 'molmod/io/lammps.py' 2021-07-14T22:27:07,128 adding 'molmod/io/number_state.py' 2021-07-14T22:27:07,130 adding 'molmod/io/pdb.py' 2021-07-14T22:27:07,132 adding 'molmod/io/psf.py' 2021-07-14T22:27:07,134 adding 'molmod/io/sdf.py' 2021-07-14T22:27:07,136 adding 'molmod/io/xyz.py' 2021-07-14T22:27:07,138 adding 'molmod/io/test/__init__.py' 2021-07-14T22:27:07,140 adding 'molmod/io/test/test_atrj.py' 2021-07-14T22:27:07,141 adding 'molmod/io/test/test_chk.py' 2021-07-14T22:27:07,143 adding 'molmod/io/test/test_cml.py' 2021-07-14T22:27:07,144 adding 'molmod/io/test/test_cp2k.py' 2021-07-14T22:27:07,145 adding 'molmod/io/test/test_cpmd.py' 2021-07-14T22:27:07,147 adding 'molmod/io/test/test_crystal.py' 2021-07-14T22:27:07,148 adding 'molmod/io/test/test_cube.py' 2021-07-14T22:27:07,150 adding 'molmod/io/test/test_dlpoly.py' 2021-07-14T22:27:07,151 adding 'molmod/io/test/test_fchk.py' 2021-07-14T22:27:07,152 adding 'molmod/io/test/test_gamess.py' 2021-07-14T22:27:07,154 adding 'molmod/io/test/test_gromacs.py' 2021-07-14T22:27:07,155 adding 'molmod/io/test/test_lammps.py' 2021-07-14T22:27:07,156 adding 'molmod/io/test/test_number_state.py' 2021-07-14T22:27:07,158 adding 'molmod/io/test/test_pdb.py' 2021-07-14T22:27:07,159 adding 'molmod/io/test/test_psf.py' 2021-07-14T22:27:07,160 adding 'molmod/io/test/test_sdf.py' 2021-07-14T22:27:07,162 adding 'molmod/io/test/test_xyz.py' 2021-07-14T22:27:07,164 adding 'molmod/test/__init__.py' 2021-07-14T22:27:07,166 adding 'molmod/test/common.py' 2021-07-14T22:27:07,167 adding 'molmod/test/test_binning.py' 2021-07-14T22:27:07,169 adding 'molmod/test/test_clusters.py' 2021-07-14T22:27:07,170 adding 'molmod/test/test_data.py' 2021-07-14T22:27:07,171 adding 'molmod/test/test_examples.py' 2021-07-14T22:27:07,175 adding 'molmod/test/test_graphs.py' 2021-07-14T22:27:07,176 adding 'molmod/test/test_ic.py' 2021-07-14T22:27:07,178 adding 'molmod/test/test_log.py' 2021-07-14T22:27:07,180 adding 'molmod/test/test_minimizer.py' 2021-07-14T22:27:07,183 adding 'molmod/test/test_molecular_graphs.py' 2021-07-14T22:27:07,185 adding 'molmod/test/test_molecules.py' 2021-07-14T22:27:07,187 adding 'molmod/test/test_pairff.py' 2021-07-14T22:27:07,189 adding 'molmod/test/test_quaternions.py' 2021-07-14T22:27:07,190 adding 'molmod/test/test_randomize.py' 2021-07-14T22:27:07,192 adding 'molmod/test/test_similarity.py' 2021-07-14T22:27:07,193 adding 'molmod/test/test_symmetry.py' 2021-07-14T22:27:07,195 adding 'molmod/test/test_toyff.py' 2021-07-14T22:27:07,197 adding 'molmod/test/test_transformations.py' 2021-07-14T22:27:07,200 adding 'molmod/test/test_unit_cells.py' 2021-07-14T22:27:07,201 adding 'molmod/test/test_units.py' 2021-07-14T22:27:07,203 adding 'molmod/test/test_utils.py' 2021-07-14T22:27:07,204 adding 'molmod/test/test_vectors.py' 2021-07-14T22:27:07,206 adding 'molmod/test/test_zmatrix.py' 2021-07-14T22:27:07,213 adding 'molmod-1.4.5.dist-info/LICENSE.txt' 2021-07-14T22:27:07,215 adding 'molmod-1.4.5.dist-info/METADATA' 2021-07-14T22:27:07,216 adding 'molmod-1.4.5.dist-info/WHEEL' 2021-07-14T22:27:07,217 adding 'molmod-1.4.5.dist-info/top_level.txt' 2021-07-14T22:27:07,220 adding 'molmod-1.4.5.dist-info/RECORD' 2021-07-14T22:27:07,256 removing build/bdist.linux-armv7l/wheel 2021-07-14T22:27:07,717 Building wheel for molmod (setup.py): finished with status 'done' 2021-07-14T22:27:07,748 Created wheel for molmod: filename=molmod-1.4.5-cp39-cp39-linux_armv7l.whl size=1955429 sha256=b3a04bb54a7150cf1bf2dd273e9b3a11d847dce18242622f153a9a2c3a1ad2b7 2021-07-14T22:27:07,748 Stored in directory: /tmp/pip-ephem-wheel-cache-jxgr16q6/wheels/40/1e/cd/8de6eb4c9a42e6da16b34533936c6d94b75bdb3941e1a51141 2021-07-14T22:27:07,765 Successfully built molmod 2021-07-14T22:27:07,836 Removed build tracker: '/tmp/pip-req-tracker-35edjak4'