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https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-14T22:36:08,246 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-14T22:36:08,246 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-14T22:36:08,246 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-14T22:36:08,247 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-14T22:36:08,247 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-14T22:36:08,247 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-14T22:36:08,248 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-14T22:36:08,248 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-14T22:36:08,248 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-14T22:36:08,248 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-14T22:36:08,249 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-14T22:36:08,275 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-14T22:36:08,294 Collecting jcvi==0.9.6 2021-07-14T22:36:08,295 Created temporary directory: /tmp/pip-unpack-_nf5ykaq 2021-07-14T22:36:08,538 Downloading jcvi-0.9.6.tar.gz (672 kB) 2021-07-14T22:36:09,090 Added jcvi==0.9.6 from https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e to build tracker '/tmp/pip-req-tracker-it3f7ua6' 2021-07-14T22:36:09,091 Running setup.py (path:/tmp/pip-wheel-am5tupuw/jcvi_862f7ef7269244f3890167e327920bff/setup.py) egg_info for package jcvi 2021-07-14T22:36:09,092 Created temporary directory: /tmp/pip-pip-egg-info-blhrdj1a 2021-07-14T22:36:09,092 Running command python setup.py egg_info 2021-07-14T22:36:10,714 running egg_info 2021-07-14T22:36:10,717 creating /tmp/pip-pip-egg-info-blhrdj1a/jcvi.egg-info 2021-07-14T22:36:10,718 writing /tmp/pip-pip-egg-info-blhrdj1a/jcvi.egg-info/PKG-INFO 2021-07-14T22:36:10,722 writing dependency_links to /tmp/pip-pip-egg-info-blhrdj1a/jcvi.egg-info/dependency_links.txt 2021-07-14T22:36:10,724 writing requirements to /tmp/pip-pip-egg-info-blhrdj1a/jcvi.egg-info/requires.txt 2021-07-14T22:36:10,725 writing top-level names to /tmp/pip-pip-egg-info-blhrdj1a/jcvi.egg-info/top_level.txt 2021-07-14T22:36:10,727 writing manifest file '/tmp/pip-pip-egg-info-blhrdj1a/jcvi.egg-info/SOURCES.txt' 2021-07-14T22:36:10,915 reading manifest file '/tmp/pip-pip-egg-info-blhrdj1a/jcvi.egg-info/SOURCES.txt' 2021-07-14T22:36:10,917 reading manifest template 'MANIFEST.in' 2021-07-14T22:36:10,920 warning: no files found matching 'utils/data/*' 2021-07-14T22:36:10,920 adding license file 'LICENSE' 2021-07-14T22:36:10,928 writing manifest file '/tmp/pip-pip-egg-info-blhrdj1a/jcvi.egg-info/SOURCES.txt' 2021-07-14T22:36:11,037 Source in /tmp/pip-wheel-am5tupuw/jcvi_862f7ef7269244f3890167e327920bff has version 0.9.6, which satisfies requirement jcvi==0.9.6 from https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e 2021-07-14T22:36:11,038 Removed jcvi==0.9.6 from https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e from build tracker '/tmp/pip-req-tracker-it3f7ua6' 2021-07-14T22:36:11,043 Created temporary directory: /tmp/pip-unpack-jbr_gfu9 2021-07-14T22:36:11,043 Building wheels for collected packages: jcvi 2021-07-14T22:36:11,047 Created temporary directory: /tmp/pip-wheel-0wxl536b 2021-07-14T22:36:11,047 Building wheel for jcvi (setup.py): started 2021-07-14T22:36:11,047 Destination directory: /tmp/pip-wheel-0wxl536b 2021-07-14T22:36:11,048 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-am5tupuw/jcvi_862f7ef7269244f3890167e327920bff/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-am5tupuw/jcvi_862f7ef7269244f3890167e327920bff/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0wxl536b 2021-07-14T22:36:12,433 running bdist_wheel 2021-07-14T22:36:12,438 running build 2021-07-14T22:36:12,439 running build_py 2021-07-14T22:36:12,570 creating build 2021-07-14T22:36:12,571 creating build/lib.linux-armv7l-3.9 2021-07-14T22:36:12,572 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-14T22:36:12,573 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-14T22:36:12,576 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,577 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,580 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,582 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,584 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,587 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,589 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,592 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,594 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,596 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,598 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,600 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,602 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T22:36:12,606 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,607 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,610 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,612 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,615 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,617 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,620 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,622 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,626 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,629 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,631 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,633 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,635 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,638 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,641 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,643 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,644 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,647 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,650 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,652 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,654 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,657 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,659 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,662 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,665 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,667 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,670 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,672 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:12,676 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,677 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,679 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,682 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,684 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,686 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,688 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,691 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,693 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,696 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,699 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,701 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,703 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,705 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,706 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,708 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,711 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,713 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,716 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,719 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,722 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,723 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,725 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,727 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,730 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,732 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,734 copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,737 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,740 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T22:36:12,743 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,744 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,746 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,749 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,751 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,754 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,758 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,760 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,763 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,764 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,766 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T22:36:12,770 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,771 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,773 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,775 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,778 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,781 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,782 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,784 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,787 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,790 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,792 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T22:36:12,796 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,797 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,800 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,802 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,804 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,806 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,808 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,810 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,812 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,815 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,817 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,819 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,821 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,824 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,827 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,830 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,833 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,835 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,837 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,840 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,842 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,845 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,847 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T22:36:12,851 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,852 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,855 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,857 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,860 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,863 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,865 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,868 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,871 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,872 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,876 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,878 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,881 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T22:36:12,885 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,886 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,891 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,894 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,897 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,903 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,915 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,919 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,927 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,930 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,932 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,934 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,936 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,938 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,941 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,944 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T22:36:12,948 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,949 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,952 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,955 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,960 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,962 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,964 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,967 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,972 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,974 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,978 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,981 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,984 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,986 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,989 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,991 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,993 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,995 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,997 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:12,999 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,001 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,005 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,007 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,009 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,013 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,016 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,018 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,020 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,022 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,024 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,028 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,029 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,031 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,034 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,036 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,039 copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,041 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,045 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,048 copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,050 copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,053 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,056 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,058 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,060 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,062 copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,064 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,067 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,069 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T22:36:13,072 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-14T22:36:13,073 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-14T22:36:13,074 running egg_info 2021-07-14T22:36:13,087 writing jcvi.egg-info/PKG-INFO 2021-07-14T22:36:13,090 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-14T22:36:13,092 writing requirements to jcvi.egg-info/requires.txt 2021-07-14T22:36:13,093 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-14T22:36:13,140 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-14T22:36:13,146 reading manifest template 'MANIFEST.in' 2021-07-14T22:36:13,149 warning: no files found matching 'utils/data/*' 2021-07-14T22:36:13,149 adding license file 'LICENSE' 2021-07-14T22:36:13,160 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-14T22:36:13,166 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:13,168 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:13,184 running build_ext 2021-07-14T22:36:13,271 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-14T22:36:13,868 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-am5tupuw/jcvi_862f7ef7269244f3890167e327920bff/jcvi/assembly/chic.pyx 2021-07-14T22:36:13,868 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T22:36:16,715 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-14T22:36:17,687 building 'jcvi.assembly.chic' extension 2021-07-14T22:36:17,688 creating build/temp.linux-armv7l-3.9 2021-07-14T22:36:17,688 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-14T22:36:17,689 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-14T22:36:17,690 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-14T22:36:18,065 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T22:36:18,066 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T22:36:18,066 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T22:36:18,066 from jcvi/assembly/chic.c:612: 2021-07-14T22:36:18,066 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T22:36:18,066 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T22:36:18,066 | ^~~~~~~ 2021-07-14T22:36:21,797 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:36:21,912 building 'jcvi.formats.cblast' extension 2021-07-14T22:36:21,913 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-14T22:36:21,917 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-14T22:36:31,307 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:36:31,455 installing to build/bdist.linux-armv7l/wheel 2021-07-14T22:36:31,456 running install 2021-07-14T22:36:31,457 running install_lib 2021-07-14T22:36:31,461 creating build/bdist.linux-armv7l 2021-07-14T22:36:31,461 creating build/bdist.linux-armv7l/wheel 2021-07-14T22:36:31,463 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-14T22:36:31,465 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,466 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,468 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,470 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,472 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,474 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,476 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,479 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,480 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,483 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,484 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,487 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,488 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T22:36:31,491 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,492 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,495 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,497 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,499 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,501 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,503 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,505 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,508 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,511 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,514 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,516 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,518 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,520 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,523 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,526 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,528 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,529 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,531 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,534 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,536 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,539 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,541 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,543 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,546 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,555 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,557 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,560 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,562 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,565 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T22:36:31,568 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,569 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,571 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,573 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,575 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,577 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,579 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,582 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,584 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,587 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,591 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,592 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,594 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,596 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,598 copying build/lib.linux-armv7l-3.9/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,600 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,602 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,604 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,608 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,611 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,613 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,615 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,617 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,619 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,621 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,623 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,625 copying build/lib.linux-armv7l-3.9/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,628 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,631 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T22:36:31,633 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,634 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,636 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,638 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,640 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,643 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,647 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,649 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,651 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,653 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,654 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T22:36:31,658 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,659 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,661 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,663 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,666 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,668 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,670 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,671 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,674 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,677 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,679 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T22:36:31,682 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,682 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,686 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,688 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,690 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,693 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,696 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,698 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,701 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,704 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,706 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,707 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,709 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,712 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,714 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,717 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,719 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,721 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,723 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,725 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,727 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,729 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,731 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T22:36:31,734 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,736 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,738 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,740 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,742 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,745 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,747 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,749 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,752 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,753 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,756 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,758 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,761 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T22:36:31,764 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,764 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,768 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,771 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,773 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,776 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,778 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,780 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,782 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,785 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,786 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,788 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,790 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,792 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,795 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,797 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T22:36:31,800 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,801 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,823 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,826 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,829 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,834 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,835 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,838 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,840 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,845 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,847 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,851 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,854 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,855 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,858 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,860 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,863 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,865 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,866 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,868 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,871 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,872 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,875 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,878 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,880 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,881 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,885 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,888 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,889 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,891 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,893 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,895 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T22:36:31,897 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-14T22:36:31,900 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,901 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-14T22:36:31,902 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-14T22:36:31,903 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,905 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,908 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,911 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,913 copying build/lib.linux-armv7l-3.9/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,915 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,918 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,920 copying build/lib.linux-armv7l-3.9/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,922 copying build/lib.linux-armv7l-3.9/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,925 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,928 copying build/lib.linux-armv7l-3.9/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,931 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,932 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,934 copying build/lib.linux-armv7l-3.9/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,936 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,939 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,941 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T22:36:31,943 running install_egg_info 2021-07-14T22:36:31,948 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-0.9.6-py3.9.egg-info 2021-07-14T22:36:31,962 running install_scripts 2021-07-14T22:36:32,014 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-14T22:36:32,019 creating build/bdist.linux-armv7l/wheel/jcvi-0.9.6.dist-info/WHEEL 2021-07-14T22:36:32,021 creating '/tmp/pip-wheel-0wxl536b/jcvi-0.9.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T22:36:32,024 adding 'jcvi/__init__.py' 2021-07-14T22:36:32,025 adding 'jcvi/algorithms/__init__.py' 2021-07-14T22:36:32,026 adding 'jcvi/algorithms/__main__.py' 2021-07-14T22:36:32,028 adding 'jcvi/algorithms/ec.py' 2021-07-14T22:36:32,029 adding 'jcvi/algorithms/formula.py' 2021-07-14T22:36:32,032 adding 'jcvi/algorithms/graph.py' 2021-07-14T22:36:32,033 adding 'jcvi/algorithms/lis.py' 2021-07-14T22:36:32,036 adding 'jcvi/algorithms/lpsolve.py' 2021-07-14T22:36:32,038 adding 'jcvi/algorithms/matrix.py' 2021-07-14T22:36:32,039 adding 'jcvi/algorithms/maxsum.py' 2021-07-14T22:36:32,040 adding 'jcvi/algorithms/ml.py' 2021-07-14T22:36:32,042 adding 'jcvi/algorithms/supermap.py' 2021-07-14T22:36:32,044 adding 'jcvi/algorithms/tsp.py' 2021-07-14T22:36:32,046 adding 'jcvi/annotation/__init__.py' 2021-07-14T22:36:32,047 adding 'jcvi/annotation/__main__.py' 2021-07-14T22:36:32,050 adding 'jcvi/annotation/ahrd.py' 2021-07-14T22:36:32,051 adding 'jcvi/annotation/automaton.py' 2021-07-14T22:36:32,053 adding 'jcvi/annotation/depth.py' 2021-07-14T22:36:32,055 adding 'jcvi/annotation/evm.py' 2021-07-14T22:36:32,057 adding 'jcvi/annotation/maker.py' 2021-07-14T22:36:32,060 adding 'jcvi/annotation/pasa.py' 2021-07-14T22:36:32,062 adding 'jcvi/annotation/qc.py' 2021-07-14T22:36:32,068 adding 'jcvi/annotation/reformat.py' 2021-07-14T22:36:32,070 adding 'jcvi/annotation/stats.py' 2021-07-14T22:36:32,072 adding 'jcvi/annotation/train.py' 2021-07-14T22:36:32,074 adding 'jcvi/apps/__init__.py' 2021-07-14T22:36:32,075 adding 'jcvi/apps/__main__.py' 2021-07-14T22:36:32,078 adding 'jcvi/apps/align.py' 2021-07-14T22:36:32,086 adding 'jcvi/apps/base.py' 2021-07-14T22:36:32,088 adding 'jcvi/apps/biomart.py' 2021-07-14T22:36:32,089 adding 'jcvi/apps/blastplus.py' 2021-07-14T22:36:32,091 adding 'jcvi/apps/bowtie.py' 2021-07-14T22:36:32,093 adding 'jcvi/apps/bwa.py' 2021-07-14T22:36:32,094 adding 'jcvi/apps/cap3.py' 2021-07-14T22:36:32,096 adding 'jcvi/apps/cdhit.py' 2021-07-14T22:36:32,097 adding 'jcvi/apps/console.py' 2021-07-14T22:36:32,099 adding 'jcvi/apps/emboss.py' 2021-07-14T22:36:32,101 adding 'jcvi/apps/fetch.py' 2021-07-14T22:36:32,104 adding 'jcvi/apps/gbsubmit.py' 2021-07-14T22:36:32,105 adding 'jcvi/apps/gmap.py' 2021-07-14T22:36:32,108 adding 'jcvi/apps/grid.py' 2021-07-14T22:36:32,112 adding 'jcvi/apps/ks.py' 2021-07-14T22:36:32,114 adding 'jcvi/apps/lastz.py' 2021-07-14T22:36:32,116 adding 'jcvi/apps/mask.py' 2021-07-14T22:36:32,120 adding 'jcvi/apps/phylo.py' 2021-07-14T22:36:32,122 adding 'jcvi/apps/r.py' 2021-07-14T22:36:32,123 adding 'jcvi/apps/restriction.py' 2021-07-14T22:36:32,124 adding 'jcvi/apps/script.py' 2021-07-14T22:36:32,126 adding 'jcvi/apps/softlink.py' 2021-07-14T22:36:32,127 adding 'jcvi/apps/tesseract.py' 2021-07-14T22:36:32,132 adding 'jcvi/apps/uclust.py' 2021-07-14T22:36:32,134 adding 'jcvi/apps/uniprot.py' 2021-07-14T22:36:32,135 adding 'jcvi/apps/vecscreen.py' 2021-07-14T22:36:32,137 adding 'jcvi/assembly/__init__.py' 2021-07-14T22:36:32,138 adding 'jcvi/assembly/__main__.py' 2021-07-14T22:36:32,147 adding 'jcvi/assembly/allmaps.py' 2021-07-14T22:36:32,150 adding 'jcvi/assembly/allpaths.py' 2021-07-14T22:36:32,152 adding 'jcvi/assembly/amos.py' 2021-07-14T22:36:32,154 adding 'jcvi/assembly/automaton.py' 2021-07-14T22:36:32,156 adding 'jcvi/assembly/bambus.py' 2021-07-14T22:36:32,157 adding 'jcvi/assembly/base.py' 2021-07-14T22:36:32,162 adding 'jcvi/assembly/ca.py' 2021-07-14T22:36:32,209 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:36:32,212 adding 'jcvi/assembly/chic.pyx' 2021-07-14T22:36:32,214 adding 'jcvi/assembly/coverage.py' 2021-07-14T22:36:32,216 adding 'jcvi/assembly/gaps.py' 2021-07-14T22:36:32,219 adding 'jcvi/assembly/geneticmap.py' 2021-07-14T22:36:32,223 adding 'jcvi/assembly/goldenpath.py' 2021-07-14T22:36:32,231 adding 'jcvi/assembly/hic.py' 2021-07-14T22:36:32,236 adding 'jcvi/assembly/kmer.py' 2021-07-14T22:36:32,237 adding 'jcvi/assembly/meraculous.py' 2021-07-14T22:36:32,239 adding 'jcvi/assembly/opticalmap.py' 2021-07-14T22:36:32,244 adding 'jcvi/assembly/patch.py' 2021-07-14T22:36:32,246 adding 'jcvi/assembly/pbjelly.py' 2021-07-14T22:36:32,248 adding 'jcvi/assembly/postprocess.py' 2021-07-14T22:36:32,252 adding 'jcvi/assembly/preprocess.py' 2021-07-14T22:36:32,253 adding 'jcvi/assembly/sim.py' 2021-07-14T22:36:32,255 adding 'jcvi/assembly/soap.py' 2021-07-14T22:36:32,257 adding 'jcvi/assembly/sspace.py' 2021-07-14T22:36:32,260 adding 'jcvi/assembly/syntenypath.py' 2021-07-14T22:36:32,261 adding 'jcvi/assembly/trinity.py' 2021-07-14T22:36:32,263 adding 'jcvi/assembly/unitig.py' 2021-07-14T22:36:32,265 adding 'jcvi/compara/__init__.py' 2021-07-14T22:36:32,267 adding 'jcvi/compara/__main__.py' 2021-07-14T22:36:32,269 adding 'jcvi/compara/blastfilter.py' 2021-07-14T22:36:32,272 adding 'jcvi/compara/catalog.py' 2021-07-14T22:36:32,276 adding 'jcvi/compara/fractionation.py' 2021-07-14T22:36:32,278 adding 'jcvi/compara/pad.py' 2021-07-14T22:36:32,281 adding 'jcvi/compara/quota.py' 2021-07-14T22:36:32,283 adding 'jcvi/compara/reconstruct.py' 2021-07-14T22:36:32,285 adding 'jcvi/compara/synfind.py' 2021-07-14T22:36:32,291 adding 'jcvi/compara/synteny.py' 2021-07-14T22:36:32,294 adding 'jcvi/formats/__init__.py' 2021-07-14T22:36:32,295 adding 'jcvi/formats/__main__.py' 2021-07-14T22:36:32,296 adding 'jcvi/formats/ace.py' 2021-07-14T22:36:32,303 adding 'jcvi/formats/agp.py' 2021-07-14T22:36:32,308 adding 'jcvi/formats/base.py' 2021-07-14T22:36:32,318 adding 'jcvi/formats/bed.py' 2021-07-14T22:36:32,324 adding 'jcvi/formats/blast.py' 2021-07-14T22:36:32,326 adding 'jcvi/formats/btab.py' 2021-07-14T22:36:32,469 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:36:32,476 adding 'jcvi/formats/cblast.pyx' 2021-07-14T22:36:32,477 adding 'jcvi/formats/cdt.py' 2021-07-14T22:36:32,479 adding 'jcvi/formats/chain.py' 2021-07-14T22:36:32,481 adding 'jcvi/formats/contig.py' 2021-07-14T22:36:32,484 adding 'jcvi/formats/coords.py' 2021-07-14T22:36:32,485 adding 'jcvi/formats/excel.py' 2021-07-14T22:36:32,496 adding 'jcvi/formats/fasta.py' 2021-07-14T22:36:32,500 adding 'jcvi/formats/fastq.py' 2021-07-14T22:36:32,502 adding 'jcvi/formats/fpc.py' 2021-07-14T22:36:32,504 adding 'jcvi/formats/genbank.py' 2021-07-14T22:36:32,518 adding 'jcvi/formats/gff.py' 2021-07-14T22:36:32,520 adding 'jcvi/formats/html.py' 2021-07-14T22:36:32,522 adding 'jcvi/formats/maf.py' 2021-07-14T22:36:32,524 adding 'jcvi/formats/obo.py' 2021-07-14T22:36:32,525 adding 'jcvi/formats/pdf.py' 2021-07-14T22:36:32,527 adding 'jcvi/formats/posmap.py' 2021-07-14T22:36:32,528 adding 'jcvi/formats/psl.py' 2021-07-14T22:36:32,530 adding 'jcvi/formats/pyblast.py' 2021-07-14T22:36:32,533 adding 'jcvi/formats/sam.py' 2021-07-14T22:36:32,535 adding 'jcvi/formats/sbt.py' 2021-07-14T22:36:32,537 adding 'jcvi/formats/sizes.py' 2021-07-14T22:36:32,540 adding 'jcvi/formats/vcf.py' 2021-07-14T22:36:32,542 adding 'jcvi/graphics/__init__.py' 2021-07-14T22:36:32,543 adding 'jcvi/graphics/__main__.py' 2021-07-14T22:36:32,546 adding 'jcvi/graphics/align.py' 2021-07-14T22:36:32,549 adding 'jcvi/graphics/assembly.py' 2021-07-14T22:36:32,551 adding 'jcvi/graphics/base.py' 2021-07-14T22:36:32,553 adding 'jcvi/graphics/blastplot.py' 2021-07-14T22:36:32,556 adding 'jcvi/graphics/chromosome.py' 2021-07-14T22:36:32,558 adding 'jcvi/graphics/coverage.py' 2021-07-14T22:36:32,560 adding 'jcvi/graphics/dotplot.py' 2021-07-14T22:36:32,562 adding 'jcvi/graphics/glyph.py' 2021-07-14T22:36:32,565 adding 'jcvi/graphics/grabseeds.py' 2021-07-14T22:36:32,567 adding 'jcvi/graphics/graph.py' 2021-07-14T22:36:32,568 adding 'jcvi/graphics/heatmap.py' 2021-07-14T22:36:32,570 adding 'jcvi/graphics/histogram.py' 2021-07-14T22:36:32,572 adding 'jcvi/graphics/karyotype.py' 2021-07-14T22:36:32,575 adding 'jcvi/graphics/landscape.py' 2021-07-14T22:36:32,576 adding 'jcvi/graphics/logo.py' 2021-07-14T22:36:32,577 adding 'jcvi/graphics/mummerplot.py' 2021-07-14T22:36:32,579 adding 'jcvi/graphics/synteny.py' 2021-07-14T22:36:32,582 adding 'jcvi/graphics/tree.py' 2021-07-14T22:36:32,583 adding 'jcvi/graphics/wheel.py' 2021-07-14T22:36:32,585 adding 'jcvi/graphics/whisker.py' 2021-07-14T22:36:32,587 adding 'jcvi/projects/__init__.py' 2021-07-14T22:36:32,588 adding 'jcvi/projects/__main__.py' 2021-07-14T22:36:32,591 adding 'jcvi/projects/age.py' 2021-07-14T22:36:32,592 adding 'jcvi/projects/alfalfa.py' 2021-07-14T22:36:32,594 adding 'jcvi/projects/allmaps.py' 2021-07-14T22:36:32,596 adding 'jcvi/projects/bites.py' 2021-07-14T22:36:32,597 adding 'jcvi/projects/heterosis.py' 2021-07-14T22:36:32,600 adding 'jcvi/projects/ies.py' 2021-07-14T22:36:32,602 adding 'jcvi/projects/misc.py' 2021-07-14T22:36:32,605 adding 'jcvi/projects/napus.py' 2021-07-14T22:36:32,608 adding 'jcvi/projects/pineapple.py' 2021-07-14T22:36:32,609 adding 'jcvi/projects/pistachio.py' 2021-07-14T22:36:32,617 adding 'jcvi/projects/str.py' 2021-07-14T22:36:32,621 adding 'jcvi/projects/synfind.py' 2021-07-14T22:36:32,624 adding 'jcvi/projects/tgbs.py' 2021-07-14T22:36:32,626 adding 'jcvi/utils/__init__.py' 2021-07-14T22:36:32,627 adding 'jcvi/utils/__main__.py' 2021-07-14T22:36:32,630 adding 'jcvi/utils/aws.py' 2021-07-14T22:36:32,632 adding 'jcvi/utils/brewer2mpl.py' 2021-07-14T22:36:32,634 adding 'jcvi/utils/cbook.py' 2021-07-14T22:36:32,636 adding 'jcvi/utils/counter.py' 2021-07-14T22:36:32,638 adding 'jcvi/utils/db.py' 2021-07-14T22:36:32,640 adding 'jcvi/utils/ez_setup.py' 2021-07-14T22:36:32,641 adding 'jcvi/utils/grouper.py' 2021-07-14T22:36:32,643 adding 'jcvi/utils/iter.py' 2021-07-14T22:36:32,645 adding 'jcvi/utils/natsort.py' 2021-07-14T22:36:32,647 adding 'jcvi/utils/orderedcollections.py' 2021-07-14T22:36:32,650 adding 'jcvi/utils/progressbar.py' 2021-07-14T22:36:32,653 adding 'jcvi/utils/range.py' 2021-07-14T22:36:32,654 adding 'jcvi/utils/table.py' 2021-07-14T22:36:32,656 adding 'jcvi/utils/taxonomy.py' 2021-07-14T22:36:32,660 adding 'jcvi/utils/webcolors.py' 2021-07-14T22:36:32,661 adding 'jcvi/utils/data/__init__.py' 2021-07-14T22:36:32,663 adding 'jcvi/variation/__init__.py' 2021-07-14T22:36:32,664 adding 'jcvi/variation/__main__.py' 2021-07-14T22:36:32,669 adding 'jcvi/variation/cnv.py' 2021-07-14T22:36:32,671 adding 'jcvi/variation/deconvolute.py' 2021-07-14T22:36:32,673 adding 'jcvi/variation/delly.py' 2021-07-14T22:36:32,675 adding 'jcvi/variation/impute.py' 2021-07-14T22:36:32,676 adding 'jcvi/variation/phase.py' 2021-07-14T22:36:32,678 adding 'jcvi/variation/snp.py' 2021-07-14T22:36:32,684 adding 'jcvi/variation/str.py' 2021-07-14T22:36:32,686 adding 'jcvi/variation/tassel.py' 2021-07-14T22:36:32,688 adding 'jcvi-0.9.6.dist-info/LICENSE' 2021-07-14T22:36:32,690 adding 'jcvi-0.9.6.dist-info/METADATA' 2021-07-14T22:36:32,691 adding 'jcvi-0.9.6.dist-info/WHEEL' 2021-07-14T22:36:32,692 adding 'jcvi-0.9.6.dist-info/top_level.txt' 2021-07-14T22:36:32,694 adding 'jcvi-0.9.6.dist-info/RECORD' 2021-07-14T22:36:32,717 removing build/bdist.linux-armv7l/wheel 2021-07-14T22:36:33,007 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-14T22:36:33,022 Created wheel for jcvi: filename=jcvi-0.9.6-cp39-cp39-linux_armv7l.whl size=1110839 sha256=70e9c92d84af5f92842cabe89cd2aa757ec97a8f21a669e1aef9f94b47d9c6a9 2021-07-14T22:36:33,023 Stored in directory: /tmp/pip-ephem-wheel-cache-nonzhfru/wheels/17/2f/98/69d871f5fa208a4e3d6fafe236710b3638aa6319328a8ffe91 2021-07-14T22:36:33,038 Successfully built jcvi 2021-07-14T22:36:33,086 Removed build tracker: '/tmp/pip-req-tracker-it3f7ua6'