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https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-14T23:06:48,517 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-14T23:06:48,517 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-14T23:06:48,517 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-14T23:06:48,518 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-14T23:06:48,518 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-14T23:06:48,518 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-14T23:06:48,518 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-14T23:06:48,519 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-14T23:06:48,519 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-14T23:06:48,519 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-14T23:06:48,519 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-14T23:06:48,548 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-14T23:06:48,568 Collecting jcvi==0.9.9 2021-07-14T23:06:48,569 Created temporary directory: /tmp/pip-unpack-p6oe8mra 2021-07-14T23:06:48,917 Downloading jcvi-0.9.9.tar.gz (672 kB) 2021-07-14T23:06:49,546 Added jcvi==0.9.9 from https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e to build tracker '/tmp/pip-req-tracker-693f4ai1' 2021-07-14T23:06:49,547 Running setup.py (path:/tmp/pip-wheel-z75lpyva/jcvi_21c7b5fe43194e35b46a4d9c9dcae827/setup.py) egg_info for package jcvi 2021-07-14T23:06:49,548 Created temporary directory: /tmp/pip-pip-egg-info-khdaoomc 2021-07-14T23:06:49,548 Running command python setup.py egg_info 2021-07-14T23:06:51,147 running egg_info 2021-07-14T23:06:51,149 creating /tmp/pip-pip-egg-info-khdaoomc/jcvi.egg-info 2021-07-14T23:06:51,150 writing /tmp/pip-pip-egg-info-khdaoomc/jcvi.egg-info/PKG-INFO 2021-07-14T23:06:51,153 writing dependency_links to /tmp/pip-pip-egg-info-khdaoomc/jcvi.egg-info/dependency_links.txt 2021-07-14T23:06:51,155 writing requirements to /tmp/pip-pip-egg-info-khdaoomc/jcvi.egg-info/requires.txt 2021-07-14T23:06:51,156 writing top-level names to /tmp/pip-pip-egg-info-khdaoomc/jcvi.egg-info/top_level.txt 2021-07-14T23:06:51,157 writing manifest file '/tmp/pip-pip-egg-info-khdaoomc/jcvi.egg-info/SOURCES.txt' 2021-07-14T23:06:51,348 reading manifest file '/tmp/pip-pip-egg-info-khdaoomc/jcvi.egg-info/SOURCES.txt' 2021-07-14T23:06:51,350 reading manifest template 'MANIFEST.in' 2021-07-14T23:06:51,353 warning: no files found matching 'utils/data/*' 2021-07-14T23:06:51,354 adding license file 'LICENSE' 2021-07-14T23:06:51,363 writing manifest file '/tmp/pip-pip-egg-info-khdaoomc/jcvi.egg-info/SOURCES.txt' 2021-07-14T23:06:51,476 Source in /tmp/pip-wheel-z75lpyva/jcvi_21c7b5fe43194e35b46a4d9c9dcae827 has version 0.9.9, which satisfies requirement jcvi==0.9.9 from https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e 2021-07-14T23:06:51,477 Removed jcvi==0.9.9 from https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e from build tracker '/tmp/pip-req-tracker-693f4ai1' 2021-07-14T23:06:51,481 Created temporary directory: /tmp/pip-unpack-hl42z65x 2021-07-14T23:06:51,482 Building wheels for collected packages: jcvi 2021-07-14T23:06:51,486 Created temporary directory: /tmp/pip-wheel-xthtfaoi 2021-07-14T23:06:51,486 Building wheel for jcvi (setup.py): started 2021-07-14T23:06:51,487 Destination directory: /tmp/pip-wheel-xthtfaoi 2021-07-14T23:06:51,487 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-z75lpyva/jcvi_21c7b5fe43194e35b46a4d9c9dcae827/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-z75lpyva/jcvi_21c7b5fe43194e35b46a4d9c9dcae827/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-xthtfaoi 2021-07-14T23:06:53,058 running bdist_wheel 2021-07-14T23:06:53,063 running build 2021-07-14T23:06:53,064 running build_py 2021-07-14T23:06:53,197 creating build 2021-07-14T23:06:53,197 creating build/lib.linux-armv7l-3.9 2021-07-14T23:06:53,198 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-14T23:06:53,199 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-14T23:06:53,202 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,202 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,204 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,207 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,209 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,212 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,214 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,218 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,220 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,222 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,224 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,227 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,230 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,233 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,234 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,237 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-14T23:06:53,240 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,241 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,244 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,246 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,249 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,252 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,254 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,258 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,260 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,262 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,265 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-14T23:06:53,268 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,269 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,272 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,274 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,276 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,279 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,281 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,284 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,287 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,291 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,294 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,296 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,299 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,301 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,304 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,307 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,309 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,311 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,313 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,317 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,319 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,321 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,326 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,328 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,330 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,333 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,336 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,339 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,343 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,344 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,347 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,350 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,353 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,355 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,358 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,361 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,363 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,367 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,370 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,373 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,377 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,379 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,382 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,385 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,387 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,389 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,391 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,393 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,395 copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,398 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,400 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,403 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,405 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,407 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,410 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,413 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,415 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-14T23:06:53,419 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,420 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,423 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,425 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,427 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,429 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,431 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,434 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,436 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,438 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,440 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,443 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,446 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-14T23:06:53,450 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,451 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,454 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,456 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,459 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,462 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,465 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,467 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,469 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,471 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,474 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,478 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,481 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,482 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,485 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,487 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,490 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,493 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,495 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,497 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,500 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,503 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,506 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-14T23:06:53,510 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,510 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,513 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,516 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,519 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,521 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,524 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,526 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,529 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,530 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,533 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,536 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,538 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-14T23:06:53,542 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,543 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,545 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,548 copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,551 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,553 copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,556 copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,558 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,561 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,563 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,566 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,568 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,571 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,573 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,576 copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,579 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,581 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,584 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-14T23:06:53,588 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,588 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,592 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,594 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,596 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,598 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,601 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,604 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,609 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,612 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,614 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,616 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,619 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,622 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,627 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,630 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,632 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,634 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,636 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,638 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,640 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,642 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,645 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,647 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,650 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,651 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,654 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,658 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,661 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,663 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,666 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,667 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,669 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,672 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,674 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,677 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,679 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,681 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,683 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,685 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,688 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-14T23:06:53,691 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-14T23:06:53,692 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-14T23:06:53,694 running egg_info 2021-07-14T23:06:53,709 writing jcvi.egg-info/PKG-INFO 2021-07-14T23:06:53,711 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-14T23:06:53,713 writing requirements to jcvi.egg-info/requires.txt 2021-07-14T23:06:53,714 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-14T23:06:53,767 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-14T23:06:53,774 reading manifest template 'MANIFEST.in' 2021-07-14T23:06:53,776 warning: no files found matching 'utils/data/*' 2021-07-14T23:06:53,777 adding license file 'LICENSE' 2021-07-14T23:06:53,789 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-14T23:06:53,796 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:53,798 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:06:53,839 running build_ext 2021-07-14T23:06:53,897 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-14T23:06:54,494 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-z75lpyva/jcvi_21c7b5fe43194e35b46a4d9c9dcae827/jcvi/assembly/chic.pyx 2021-07-14T23:06:54,494 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-14T23:06:57,345 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-14T23:06:58,333 building 'jcvi.assembly.chic' extension 2021-07-14T23:06:58,334 creating build/temp.linux-armv7l-3.9 2021-07-14T23:06:58,334 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-14T23:06:58,335 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-14T23:06:58,336 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-14T23:06:58,715 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-14T23:06:58,715 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T23:06:58,715 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T23:06:58,716 from jcvi/assembly/chic.c:612: 2021-07-14T23:06:58,716 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-14T23:06:58,716 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-14T23:06:58,716 | ^~~~~~~ 2021-07-14T23:07:02,494 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-14T23:07:02,624 building 'jcvi.formats.cblast' extension 2021-07-14T23:07:02,625 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-14T23:07:02,625 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-14T23:07:12,124 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-14T23:07:12,294 installing to build/bdist.linux-armv7l/wheel 2021-07-14T23:07:12,295 running install 2021-07-14T23:07:12,296 running install_lib 2021-07-14T23:07:12,302 creating build/bdist.linux-armv7l 2021-07-14T23:07:12,302 creating build/bdist.linux-armv7l/wheel 2021-07-14T23:07:12,305 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-14T23:07:12,307 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,308 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,311 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,314 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,317 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,319 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,322 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,326 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,329 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,330 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,333 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,336 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,339 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,342 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,344 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,347 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-14T23:07:12,350 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,351 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,354 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,357 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,359 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,363 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,365 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,369 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,371 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,374 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,376 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-14T23:07:12,380 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,380 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,383 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,386 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,388 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,391 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,394 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,397 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,400 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,405 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,408 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,411 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,414 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,417 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,420 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,422 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,425 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,427 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,428 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,431 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,439 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,442 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,444 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,447 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,451 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,453 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,455 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,459 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,462 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,465 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-14T23:07:12,469 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,470 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,474 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,478 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,480 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,483 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,486 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,489 copying build/lib.linux-armv7l-3.9/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,492 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,497 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,500 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,503 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,507 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,510 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,514 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,516 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,519 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,522 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,524 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,526 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,528 copying build/lib.linux-armv7l-3.9/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,531 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,533 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,536 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,538 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,541 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,544 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,547 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,550 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-14T23:07:12,553 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,555 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,558 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,561 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,562 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,565 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,568 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,571 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,574 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,576 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,579 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,582 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,584 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-14T23:07:12,588 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-14T23:07:12,591 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,592 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,595 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,598 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,601 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,605 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,608 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,612 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,615 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,617 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,620 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,624 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,627 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,629 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,631 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,634 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,637 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,639 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,644 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,646 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,648 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,651 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,653 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-14T23:07:12,657 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,658 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,661 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,664 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,667 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,670 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,672 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,676 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,679 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,680 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,683 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,686 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,688 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-14T23:07:12,691 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,692 copying build/lib.linux-armv7l-3.9/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,695 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,698 copying build/lib.linux-armv7l-3.9/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,701 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-14T23:07:12,702 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-14T23:07:12,704 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,707 copying build/lib.linux-armv7l-3.9/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,709 copying build/lib.linux-armv7l-3.9/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,712 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,716 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,717 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,720 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,723 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,726 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,729 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,732 copying build/lib.linux-armv7l-3.9/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,735 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,737 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,740 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-14T23:07:12,744 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,745 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,748 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,751 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,758 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,760 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,763 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,767 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,772 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,776 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,778 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,781 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,784 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,787 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,793 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,796 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,798 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,898 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,902 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,905 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,907 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,911 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,915 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,918 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,922 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,925 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,927 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,930 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,933 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,937 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,940 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,942 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-14T23:07:12,945 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,946 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,949 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,952 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,955 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,958 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,960 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,963 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,965 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,967 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,971 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-14T23:07:12,974 running install_egg_info 2021-07-14T23:07:12,979 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-0.9.9-py3.9.egg-info 2021-07-14T23:07:12,995 running install_scripts 2021-07-14T23:07:13,053 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-14T23:07:13,058 creating build/bdist.linux-armv7l/wheel/jcvi-0.9.9.dist-info/WHEEL 2021-07-14T23:07:13,060 creating '/tmp/pip-wheel-xthtfaoi/jcvi-0.9.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T23:07:13,063 adding 'jcvi/__init__.py' 2021-07-14T23:07:13,065 adding 'jcvi/algorithms/__init__.py' 2021-07-14T23:07:13,066 adding 'jcvi/algorithms/__main__.py' 2021-07-14T23:07:13,068 adding 'jcvi/algorithms/ec.py' 2021-07-14T23:07:13,070 adding 'jcvi/algorithms/formula.py' 2021-07-14T23:07:13,072 adding 'jcvi/algorithms/graph.py' 2021-07-14T23:07:13,074 adding 'jcvi/algorithms/lis.py' 2021-07-14T23:07:13,077 adding 'jcvi/algorithms/lpsolve.py' 2021-07-14T23:07:13,079 adding 'jcvi/algorithms/matrix.py' 2021-07-14T23:07:13,081 adding 'jcvi/algorithms/maxsum.py' 2021-07-14T23:07:13,082 adding 'jcvi/algorithms/ml.py' 2021-07-14T23:07:13,084 adding 'jcvi/algorithms/supermap.py' 2021-07-14T23:07:13,085 adding 'jcvi/algorithms/tsp.py' 2021-07-14T23:07:13,087 adding 'jcvi/annotation/__init__.py' 2021-07-14T23:07:13,088 adding 'jcvi/annotation/__main__.py' 2021-07-14T23:07:13,091 adding 'jcvi/annotation/ahrd.py' 2021-07-14T23:07:13,093 adding 'jcvi/annotation/automaton.py' 2021-07-14T23:07:13,095 adding 'jcvi/annotation/depth.py' 2021-07-14T23:07:13,096 adding 'jcvi/annotation/evm.py' 2021-07-14T23:07:13,099 adding 'jcvi/annotation/maker.py' 2021-07-14T23:07:13,101 adding 'jcvi/annotation/pasa.py' 2021-07-14T23:07:13,103 adding 'jcvi/annotation/qc.py' 2021-07-14T23:07:13,109 adding 'jcvi/annotation/reformat.py' 2021-07-14T23:07:13,112 adding 'jcvi/annotation/stats.py' 2021-07-14T23:07:13,114 adding 'jcvi/annotation/train.py' 2021-07-14T23:07:13,116 adding 'jcvi/apps/__init__.py' 2021-07-14T23:07:13,117 adding 'jcvi/apps/__main__.py' 2021-07-14T23:07:13,119 adding 'jcvi/apps/align.py' 2021-07-14T23:07:13,128 adding 'jcvi/apps/base.py' 2021-07-14T23:07:13,130 adding 'jcvi/apps/biomart.py' 2021-07-14T23:07:13,132 adding 'jcvi/apps/blastplus.py' 2021-07-14T23:07:13,133 adding 'jcvi/apps/bowtie.py' 2021-07-14T23:07:13,135 adding 'jcvi/apps/bwa.py' 2021-07-14T23:07:13,137 adding 'jcvi/apps/cap3.py' 2021-07-14T23:07:13,138 adding 'jcvi/apps/cdhit.py' 2021-07-14T23:07:13,140 adding 'jcvi/apps/console.py' 2021-07-14T23:07:13,141 adding 'jcvi/apps/emboss.py' 2021-07-14T23:07:13,144 adding 'jcvi/apps/fetch.py' 2021-07-14T23:07:13,146 adding 'jcvi/apps/gbsubmit.py' 2021-07-14T23:07:13,148 adding 'jcvi/apps/gmap.py' 2021-07-14T23:07:13,151 adding 'jcvi/apps/grid.py' 2021-07-14T23:07:13,155 adding 'jcvi/apps/ks.py' 2021-07-14T23:07:13,157 adding 'jcvi/apps/lastz.py' 2021-07-14T23:07:13,159 adding 'jcvi/apps/mask.py' 2021-07-14T23:07:13,163 adding 'jcvi/apps/phylo.py' 2021-07-14T23:07:13,165 adding 'jcvi/apps/r.py' 2021-07-14T23:07:13,166 adding 'jcvi/apps/restriction.py' 2021-07-14T23:07:13,168 adding 'jcvi/apps/script.py' 2021-07-14T23:07:13,169 adding 'jcvi/apps/softlink.py' 2021-07-14T23:07:13,170 adding 'jcvi/apps/tesseract.py' 2021-07-14T23:07:13,175 adding 'jcvi/apps/uclust.py' 2021-07-14T23:07:13,177 adding 'jcvi/apps/uniprot.py' 2021-07-14T23:07:13,178 adding 'jcvi/apps/vecscreen.py' 2021-07-14T23:07:13,181 adding 'jcvi/assembly/__init__.py' 2021-07-14T23:07:13,182 adding 'jcvi/assembly/__main__.py' 2021-07-14T23:07:13,191 adding 'jcvi/assembly/allmaps.py' 2021-07-14T23:07:13,194 adding 'jcvi/assembly/allpaths.py' 2021-07-14T23:07:13,196 adding 'jcvi/assembly/amos.py' 2021-07-14T23:07:13,198 adding 'jcvi/assembly/automaton.py' 2021-07-14T23:07:13,200 adding 'jcvi/assembly/bambus.py' 2021-07-14T23:07:13,201 adding 'jcvi/assembly/base.py' 2021-07-14T23:07:13,206 adding 'jcvi/assembly/ca.py' 2021-07-14T23:07:13,254 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T23:07:13,258 adding 'jcvi/assembly/chic.pyx' 2021-07-14T23:07:13,259 adding 'jcvi/assembly/coverage.py' 2021-07-14T23:07:13,261 adding 'jcvi/assembly/gaps.py' 2021-07-14T23:07:13,264 adding 'jcvi/assembly/geneticmap.py' 2021-07-14T23:07:13,268 adding 'jcvi/assembly/goldenpath.py' 2021-07-14T23:07:13,275 adding 'jcvi/assembly/hic.py' 2021-07-14T23:07:13,279 adding 'jcvi/assembly/kmer.py' 2021-07-14T23:07:13,281 adding 'jcvi/assembly/meraculous.py' 2021-07-14T23:07:13,283 adding 'jcvi/assembly/opticalmap.py' 2021-07-14T23:07:13,288 adding 'jcvi/assembly/patch.py' 2021-07-14T23:07:13,290 adding 'jcvi/assembly/pbjelly.py' 2021-07-14T23:07:13,292 adding 'jcvi/assembly/postprocess.py' 2021-07-14T23:07:13,296 adding 'jcvi/assembly/preprocess.py' 2021-07-14T23:07:13,297 adding 'jcvi/assembly/sim.py' 2021-07-14T23:07:13,299 adding 'jcvi/assembly/soap.py' 2021-07-14T23:07:13,301 adding 'jcvi/assembly/sspace.py' 2021-07-14T23:07:13,304 adding 'jcvi/assembly/syntenypath.py' 2021-07-14T23:07:13,305 adding 'jcvi/assembly/trinity.py' 2021-07-14T23:07:13,307 adding 'jcvi/assembly/unitig.py' 2021-07-14T23:07:13,309 adding 'jcvi/compara/__init__.py' 2021-07-14T23:07:13,310 adding 'jcvi/compara/__main__.py' 2021-07-14T23:07:13,312 adding 'jcvi/compara/blastfilter.py' 2021-07-14T23:07:13,316 adding 'jcvi/compara/catalog.py' 2021-07-14T23:07:13,319 adding 'jcvi/compara/fractionation.py' 2021-07-14T23:07:13,322 adding 'jcvi/compara/pad.py' 2021-07-14T23:07:13,324 adding 'jcvi/compara/quota.py' 2021-07-14T23:07:13,326 adding 'jcvi/compara/reconstruct.py' 2021-07-14T23:07:13,327 adding 'jcvi/compara/synfind.py' 2021-07-14T23:07:13,334 adding 'jcvi/compara/synteny.py' 2021-07-14T23:07:13,337 adding 'jcvi/formats/__init__.py' 2021-07-14T23:07:13,338 adding 'jcvi/formats/__main__.py' 2021-07-14T23:07:13,339 adding 'jcvi/formats/ace.py' 2021-07-14T23:07:13,347 adding 'jcvi/formats/agp.py' 2021-07-14T23:07:13,352 adding 'jcvi/formats/base.py' 2021-07-14T23:07:13,362 adding 'jcvi/formats/bed.py' 2021-07-14T23:07:13,368 adding 'jcvi/formats/blast.py' 2021-07-14T23:07:13,369 adding 'jcvi/formats/btab.py' 2021-07-14T23:07:13,505 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T23:07:13,512 adding 'jcvi/formats/cblast.pyx' 2021-07-14T23:07:13,514 adding 'jcvi/formats/cdt.py' 2021-07-14T23:07:13,515 adding 'jcvi/formats/chain.py' 2021-07-14T23:07:13,517 adding 'jcvi/formats/contig.py' 2021-07-14T23:07:13,519 adding 'jcvi/formats/coords.py' 2021-07-14T23:07:13,521 adding 'jcvi/formats/excel.py' 2021-07-14T23:07:13,531 adding 'jcvi/formats/fasta.py' 2021-07-14T23:07:13,535 adding 'jcvi/formats/fastq.py' 2021-07-14T23:07:13,537 adding 'jcvi/formats/fpc.py' 2021-07-14T23:07:13,539 adding 'jcvi/formats/genbank.py' 2021-07-14T23:07:13,553 adding 'jcvi/formats/gff.py' 2021-07-14T23:07:13,556 adding 'jcvi/formats/html.py' 2021-07-14T23:07:13,557 adding 'jcvi/formats/maf.py' 2021-07-14T23:07:13,559 adding 'jcvi/formats/obo.py' 2021-07-14T23:07:13,560 adding 'jcvi/formats/pdf.py' 2021-07-14T23:07:13,562 adding 'jcvi/formats/posmap.py' 2021-07-14T23:07:13,564 adding 'jcvi/formats/psl.py' 2021-07-14T23:07:13,565 adding 'jcvi/formats/pyblast.py' 2021-07-14T23:07:13,569 adding 'jcvi/formats/sam.py' 2021-07-14T23:07:13,570 adding 'jcvi/formats/sbt.py' 2021-07-14T23:07:13,572 adding 'jcvi/formats/sizes.py' 2021-07-14T23:07:13,576 adding 'jcvi/formats/vcf.py' 2021-07-14T23:07:13,578 adding 'jcvi/graphics/__init__.py' 2021-07-14T23:07:13,579 adding 'jcvi/graphics/__main__.py' 2021-07-14T23:07:13,581 adding 'jcvi/graphics/align.py' 2021-07-14T23:07:13,584 adding 'jcvi/graphics/assembly.py' 2021-07-14T23:07:13,586 adding 'jcvi/graphics/base.py' 2021-07-14T23:07:13,588 adding 'jcvi/graphics/blastplot.py' 2021-07-14T23:07:13,591 adding 'jcvi/graphics/chromosome.py' 2021-07-14T23:07:13,593 adding 'jcvi/graphics/coverage.py' 2021-07-14T23:07:13,595 adding 'jcvi/graphics/dotplot.py' 2021-07-14T23:07:13,598 adding 'jcvi/graphics/glyph.py' 2021-07-14T23:07:13,601 adding 'jcvi/graphics/grabseeds.py' 2021-07-14T23:07:13,602 adding 'jcvi/graphics/graph.py' 2021-07-14T23:07:13,604 adding 'jcvi/graphics/heatmap.py' 2021-07-14T23:07:13,606 adding 'jcvi/graphics/histogram.py' 2021-07-14T23:07:13,608 adding 'jcvi/graphics/karyotype.py' 2021-07-14T23:07:13,610 adding 'jcvi/graphics/landscape.py' 2021-07-14T23:07:13,612 adding 'jcvi/graphics/logo.py' 2021-07-14T23:07:13,613 adding 'jcvi/graphics/mummerplot.py' 2021-07-14T23:07:13,615 adding 'jcvi/graphics/synteny.py' 2021-07-14T23:07:13,618 adding 'jcvi/graphics/tree.py' 2021-07-14T23:07:13,619 adding 'jcvi/graphics/wheel.py' 2021-07-14T23:07:13,620 adding 'jcvi/graphics/whisker.py' 2021-07-14T23:07:13,622 adding 'jcvi/projects/__init__.py' 2021-07-14T23:07:13,623 adding 'jcvi/projects/__main__.py' 2021-07-14T23:07:13,626 adding 'jcvi/projects/age.py' 2021-07-14T23:07:13,628 adding 'jcvi/projects/alfalfa.py' 2021-07-14T23:07:13,630 adding 'jcvi/projects/allmaps.py' 2021-07-14T23:07:13,632 adding 'jcvi/projects/bites.py' 2021-07-14T23:07:13,633 adding 'jcvi/projects/heterosis.py' 2021-07-14T23:07:13,636 adding 'jcvi/projects/ies.py' 2021-07-14T23:07:13,638 adding 'jcvi/projects/misc.py' 2021-07-14T23:07:13,642 adding 'jcvi/projects/napus.py' 2021-07-14T23:07:13,644 adding 'jcvi/projects/pineapple.py' 2021-07-14T23:07:13,646 adding 'jcvi/projects/pistachio.py' 2021-07-14T23:07:13,658 adding 'jcvi/projects/str.py' 2021-07-14T23:07:13,663 adding 'jcvi/projects/synfind.py' 2021-07-14T23:07:13,666 adding 'jcvi/projects/tgbs.py' 2021-07-14T23:07:13,668 adding 'jcvi/utils/__init__.py' 2021-07-14T23:07:13,669 adding 'jcvi/utils/__main__.py' 2021-07-14T23:07:13,672 adding 'jcvi/utils/aws.py' 2021-07-14T23:07:13,674 adding 'jcvi/utils/brewer2mpl.py' 2021-07-14T23:07:13,676 adding 'jcvi/utils/cbook.py' 2021-07-14T23:07:13,678 adding 'jcvi/utils/counter.py' 2021-07-14T23:07:13,679 adding 'jcvi/utils/db.py' 2021-07-14T23:07:13,681 adding 'jcvi/utils/ez_setup.py' 2021-07-14T23:07:13,683 adding 'jcvi/utils/grouper.py' 2021-07-14T23:07:13,685 adding 'jcvi/utils/iter.py' 2021-07-14T23:07:13,686 adding 'jcvi/utils/natsort.py' 2021-07-14T23:07:13,689 adding 'jcvi/utils/orderedcollections.py' 2021-07-14T23:07:13,692 adding 'jcvi/utils/progressbar.py' 2021-07-14T23:07:13,694 adding 'jcvi/utils/range.py' 2021-07-14T23:07:13,696 adding 'jcvi/utils/table.py' 2021-07-14T23:07:13,697 adding 'jcvi/utils/taxonomy.py' 2021-07-14T23:07:13,700 adding 'jcvi/utils/webcolors.py' 2021-07-14T23:07:13,702 adding 'jcvi/utils/data/__init__.py' 2021-07-14T23:07:13,704 adding 'jcvi/variation/__init__.py' 2021-07-14T23:07:13,705 adding 'jcvi/variation/__main__.py' 2021-07-14T23:07:13,710 adding 'jcvi/variation/cnv.py' 2021-07-14T23:07:13,712 adding 'jcvi/variation/deconvolute.py' 2021-07-14T23:07:13,714 adding 'jcvi/variation/delly.py' 2021-07-14T23:07:13,716 adding 'jcvi/variation/impute.py' 2021-07-14T23:07:13,717 adding 'jcvi/variation/phase.py' 2021-07-14T23:07:13,719 adding 'jcvi/variation/snp.py' 2021-07-14T23:07:13,726 adding 'jcvi/variation/str.py' 2021-07-14T23:07:13,728 adding 'jcvi/variation/tassel.py' 2021-07-14T23:07:13,730 adding 'jcvi-0.9.9.dist-info/LICENSE' 2021-07-14T23:07:13,732 adding 'jcvi-0.9.9.dist-info/METADATA' 2021-07-14T23:07:13,733 adding 'jcvi-0.9.9.dist-info/WHEEL' 2021-07-14T23:07:13,734 adding 'jcvi-0.9.9.dist-info/top_level.txt' 2021-07-14T23:07:13,737 adding 'jcvi-0.9.9.dist-info/RECORD' 2021-07-14T23:07:13,754 removing build/bdist.linux-armv7l/wheel 2021-07-14T23:07:14,049 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-14T23:07:14,065 Created wheel for jcvi: filename=jcvi-0.9.9-cp39-cp39-linux_armv7l.whl size=1112013 sha256=c5207354a2e449ed12b909dfb7120cac190a319bc083e3aec48266b2d63f8b0f 2021-07-14T23:07:14,065 Stored in directory: /tmp/pip-ephem-wheel-cache-__isaoft/wheels/1a/e7/41/2bf202dfc4be041ceb797dbc94a160048121818e5ae58dc5ab 2021-07-14T23:07:14,083 Successfully built jcvi 2021-07-14T23:07:14,126 Removed build tracker: '/tmp/pip-req-tracker-693f4ai1'