2021-07-15T00:09:15,809 Created temporary directory: /tmp/pip-ephem-wheel-cache-1hvdnm3e
2021-07-15T00:09:15,812 Created temporary directory: /tmp/pip-req-tracker-u1npkfej
2021-07-15T00:09:15,813 Initialized build tracking at /tmp/pip-req-tracker-u1npkfej
2021-07-15T00:09:15,813 Created build tracker: /tmp/pip-req-tracker-u1npkfej
2021-07-15T00:09:15,813 Entered build tracker: /tmp/pip-req-tracker-u1npkfej
2021-07-15T00:09:15,814 Created temporary directory: /tmp/pip-wheel-wd9vtk_n
2021-07-15T00:09:15,844 1 location(s) to search for versions of py-popgen:
2021-07-15T00:09:15,844 * https://pypi.org/simple/py-popgen/
2021-07-15T00:09:15,845 Fetching project page and analyzing links: https://pypi.org/simple/py-popgen/
2021-07-15T00:09:15,846 Getting page https://pypi.org/simple/py-popgen/
2021-07-15T00:09:15,847 Found index url https://pypi.org/simple
2021-07-15T00:09:15,947   Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz#sha256=c95c719e8e1536b59b32fd617118d8374e8b4438ec114d1fc48704ccf9ccaf9a (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2021-07-15T00:09:15,948   Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz#sha256=150557350080571d2db292b647478c80bfe7bfd81a3750db368276e613fae36d (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2021-07-15T00:09:15,949   Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz#sha256=e27fb4877027f544d95ae0c11406d08ea69239b5f67b563d2a17cc82d5fa0ea3 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2021-07-15T00:09:15,951   Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2021-07-15T00:09:15,953   Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz#sha256=29493332c6131f297c20575b30e7a15ee2782dd517cb6bd7c3e25bd06f38e37e (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2021-07-15T00:09:15,955   Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz#sha256=f96e091bdf05b28954c4f0550adb2dee824cde8881c00616498a6f3ada14ab0b (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2021-07-15T00:09:15,956   Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz#sha256=3d18d3360fdc4296a01f3c530757723b4ffe97bed9776e54f643b480e9439bcc (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2021-07-15T00:09:15,958   Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz#sha256=160d2c545729a8ac81d7146baff2f48df6cc8728161ffd534462e7d93343fb21 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2021-07-15T00:09:15,960   Found link https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz#sha256=c6a4cb6f8f2064a6188888dc2e1804c9abdb338f23a23c057cdcf9ca2e410867 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.7
2021-07-15T00:09:15,961   Found link https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz#sha256=7278deed48de6eac28aaef32c6df010cdf81403dd86400ab5923da84d95ea1eb (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.8
2021-07-15T00:09:15,962   Found link https://files.pythonhosted.org/packages/88/3c/6b73834e1fa600547be5f512a468b05278988b42551f60dc0ea8b9a2f4e4/py-popgen-0.1.9.tar.gz#sha256=92ad36bf05549cf11b2d14ed11949c7ce54c40d2d626831117fec075dd169be2 (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.9
2021-07-15T00:09:15,963   Found link https://files.pythonhosted.org/packages/ab/81/50731960a816f3bcc8b702f08afc519b0ddf8e24c410407d1d6df077cdbf/py-popgen-0.1.10.tar.gz#sha256=59b548162f03fc77dd477985f74ac1d952b0c58a47ed42b4930fe392df0a2096 (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.10
2021-07-15T00:09:15,983   Found link https://files.pythonhosted.org/packages/67/60/fbff5462a4af1c54c37a10d333d2e44ee195b3f3ae78d402d41855b0ee45/py_popgen-0.1.10-py3-none-any.whl#sha256=dbca10ee0c0fea4b850cb8d571a408da3f8e8501a722852118c4e099ef2bc06d (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.10
2021-07-15T00:09:15,984   Found link https://files.pythonhosted.org/packages/e7/d0/6b98b77af174bd0426ba17172150f14c425f719afce215ed8fda20f38365/py-popgen-0.1.11.tar.gz#sha256=76233954accb51ce297bdb29314660d8151f7e6949a53752a79194d7f4f86b65 (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.11
2021-07-15T00:09:15,985   Found link https://files.pythonhosted.org/packages/65/2d/e6b28bebe9042fc9194bc2420af218acf7b7aa137b61666f7584cc6b68b8/py-popgen-0.1.12.tar.gz#sha256=4288c9594ed38c9db8764c3139f8a7b6292e6edfa6126344db2e985aadd9696e (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.12
2021-07-15T00:09:15,985 Skipping link: not a file: https://pypi.org/simple/py-popgen/
2021-07-15T00:09:15,988 Given no hashes to check 1 links for project 'py-popgen': discarding no candidates
2021-07-15T00:09:16,009 Collecting py-popgen==0.1
2021-07-15T00:09:16,011   Created temporary directory: /tmp/pip-unpack-rs35rbx_
2021-07-15T00:09:16,059   Downloading py-popgen-0.1.tar.gz (27.2 MB)
2021-07-15T00:09:21,390   Added py-popgen==0.1 from https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz#sha256=e27fb4877027f544d95ae0c11406d08ea69239b5f67b563d2a17cc82d5fa0ea3 to build tracker '/tmp/pip-req-tracker-u1npkfej'
2021-07-15T00:09:21,391     Running setup.py (path:/tmp/pip-wheel-wd9vtk_n/py-popgen_a78506334a7149a5bf6e76dcbe4d0731/setup.py) egg_info for package py-popgen
2021-07-15T00:09:21,392     Created temporary directory: /tmp/pip-pip-egg-info-oajxbjv4
2021-07-15T00:09:21,393     Running command python setup.py egg_info
2021-07-15T00:09:23,218     running egg_info
2021-07-15T00:09:23,221     creating /tmp/pip-pip-egg-info-oajxbjv4/py_popgen.egg-info
2021-07-15T00:09:23,222     writing /tmp/pip-pip-egg-info-oajxbjv4/py_popgen.egg-info/PKG-INFO
2021-07-15T00:09:23,224     writing dependency_links to /tmp/pip-pip-egg-info-oajxbjv4/py_popgen.egg-info/dependency_links.txt
2021-07-15T00:09:23,226     writing requirements to /tmp/pip-pip-egg-info-oajxbjv4/py_popgen.egg-info/requires.txt
2021-07-15T00:09:23,227     writing top-level names to /tmp/pip-pip-egg-info-oajxbjv4/py_popgen.egg-info/top_level.txt
2021-07-15T00:09:23,229     writing manifest file '/tmp/pip-pip-egg-info-oajxbjv4/py_popgen.egg-info/SOURCES.txt'
2021-07-15T00:09:23,429     reading manifest file '/tmp/pip-pip-egg-info-oajxbjv4/py_popgen.egg-info/SOURCES.txt'
2021-07-15T00:09:23,430     reading manifest template 'MANIFEST.in'
2021-07-15T00:09:23,449     writing manifest file '/tmp/pip-pip-egg-info-oajxbjv4/py_popgen.egg-info/SOURCES.txt'
2021-07-15T00:09:23,570   Source in /tmp/pip-wheel-wd9vtk_n/py-popgen_a78506334a7149a5bf6e76dcbe4d0731 has version 0.1, which satisfies requirement py-popgen==0.1 from https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz#sha256=e27fb4877027f544d95ae0c11406d08ea69239b5f67b563d2a17cc82d5fa0ea3
2021-07-15T00:09:23,571   Removed py-popgen==0.1 from https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz#sha256=e27fb4877027f544d95ae0c11406d08ea69239b5f67b563d2a17cc82d5fa0ea3 from build tracker '/tmp/pip-req-tracker-u1npkfej'
2021-07-15T00:09:23,583 Created temporary directory: /tmp/pip-unpack-alsrp6qn
2021-07-15T00:09:23,584 Building wheels for collected packages: py-popgen
2021-07-15T00:09:23,588   Created temporary directory: /tmp/pip-wheel-frzak5za
2021-07-15T00:09:23,589   Building wheel for py-popgen (setup.py): started
2021-07-15T00:09:23,590   Destination directory: /tmp/pip-wheel-frzak5za
2021-07-15T00:09:23,590   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-wd9vtk_n/py-popgen_a78506334a7149a5bf6e76dcbe4d0731/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-wd9vtk_n/py-popgen_a78506334a7149a5bf6e76dcbe4d0731/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-frzak5za
2021-07-15T00:09:25,344   running bdist_wheel
2021-07-15T00:09:25,350   running build
2021-07-15T00:09:25,350   running build_py
2021-07-15T00:09:25,498   creating build
2021-07-15T00:09:25,499   creating build/lib.linux-armv7l-3.9
2021-07-15T00:09:25,499   creating build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,500   copying pgpipe/model.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,503   copying pgpipe/filter_single_vcf.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,505   copying pgpipe/fasta.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,507   copying pgpipe/get_nonmissing_chunks.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,509   copying pgpipe/admixtools.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,511   copying pgpipe/vcf_split_pysam.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,514   copying pgpipe/bcftools.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,517   copying pgpipe/ima_priors.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,519   copying pgpipe/vcf_filter_vcftools.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,522   copying pgpipe/vcf_ref_to_seq.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,524   copying pgpipe/convert.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,527   copying pgpipe/eigenstrat_fstats.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,530   copying pgpipe/plink_ld.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,533   copying pgpipe/model_creator.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,535   copying pgpipe/extend_loci.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,537   copying pgpipe/vcf_sampler.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,540   copying pgpipe/site_stats.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,542   copying pgpipe/stat_sampler.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,545   copying pgpipe/vcf_phase.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,548   copying pgpipe/bed_tasks.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,551   copying pgpipe/argparse_sets.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,553   copying pgpipe/admixture.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,556   copying pgpipe/plink.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,558   copying pgpipe/vcf_to_treemix.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,560   copying pgpipe/vcf_to_ima.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,563   copying pgpipe/shapeit.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,566   copying pgpipe/graph_plotter.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,568   copying pgpipe/vcftools.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,571   copying pgpipe/bed_invert.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,574   copying pgpipe/parse_functions.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,576   copying pgpipe/four_gamete.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,579   copying pgpipe/logging_module.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,581   copying pgpipe/beagle.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,584   copying pgpipe/vcf_utilities.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,587   copying pgpipe/vcf_calc.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,590   copying pgpipe/picard.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,592   copying pgpipe/genome_region.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,595   copying pgpipe/model_sampler.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,597   copying pgpipe/subtract_bed.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,600   copying pgpipe/vcf_filter.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,603   copying pgpipe/fasta_utilities.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,605   copying pgpipe/__init__.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,607   copying pgpipe/vcf_liftover.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,610   copying pgpipe/vcf_split.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,613   copying pgpipe/vcf_filter_bcftools.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,616   copying pgpipe/vcf_reader_func.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,619   copying pgpipe/bedtools.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,621   copying pgpipe/ima3_wrapper.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,624   copying pgpipe/min_pop_filter.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,625   copying pgpipe/ima_to_treemix.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,627   copying pgpipe/informative_loci_filter.py -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,630   running egg_info
2021-07-15T00:09:25,671   writing py_popgen.egg-info/PKG-INFO
2021-07-15T00:09:25,673   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2021-07-15T00:09:25,675   writing requirements to py_popgen.egg-info/requires.txt
2021-07-15T00:09:25,676   writing top-level names to py_popgen.egg-info/top_level.txt
2021-07-15T00:09:25,714   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2021-07-15T00:09:25,717   reading manifest template 'MANIFEST.in'
2021-07-15T00:09:25,743   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2021-07-15T00:09:25,746   copying pgpipe/test_cython.c -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,751   copying pgpipe/test_cython.pyx -> build/lib.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,757   running build_ext
2021-07-15T00:09:25,762   building 'pgpipe.test_cython' extension
2021-07-15T00:09:25,763   creating build/temp.linux-armv7l-3.9
2021-07-15T00:09:25,763   creating build/temp.linux-armv7l-3.9/pgpipe
2021-07-15T00:09:25,764   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c pgpipe/test_cython.c -o build/temp.linux-armv7l-3.9/pgpipe/test_cython.o
2021-07-15T00:09:26,245   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_getAlleleCountArray’:
2021-07-15T00:09:26,246   pgpipe/test_cython.c:1426:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2021-07-15T00:09:26,247    1426 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2021-07-15T00:09:26,247         |                 ^
2021-07-15T00:09:26,248   pgpipe/test_cython.c:1426:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2021-07-15T00:09:26,248    1426 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2021-07-15T00:09:26,248         |                                           ^
2021-07-15T00:09:26,256   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_2getAlleleCountArraySub’:
2021-07-15T00:09:26,257   pgpipe/test_cython.c:1842:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2021-07-15T00:09:26,257    1842 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2021-07-15T00:09:26,257         |                 ^
2021-07-15T00:09:26,259   pgpipe/test_cython.c:1842:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2021-07-15T00:09:26,259    1842 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2021-07-15T00:09:26,259         |                                           ^
2021-07-15T00:09:26,280   pgpipe/test_cython.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-15T00:09:26,282   pgpipe/test_cython.c:2686:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,282    2686 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,283         |                     ^
2021-07-15T00:09:26,284   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,284                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,284                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,284   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T00:09:26,285     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T00:09:26,285         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,286   pgpipe/test_cython.c:2686:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,286    2686 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,286         |                     ^
2021-07-15T00:09:26,287   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,287                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,287                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,287   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-15T00:09:26,288     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-15T00:09:26,288         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,288   pgpipe/test_cython.c:2686:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,288    2686 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,288         |                     ^
2021-07-15T00:09:26,289   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,289                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,289                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,289   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T00:09:26,290     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T00:09:26,290         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,290   pgpipe/test_cython.c:2686:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,290    2686 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,290         |                     ^
2021-07-15T00:09:26,291   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,291                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,291                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,291   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T00:09:26,291     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T00:09:26,292         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,292   pgpipe/test_cython.c:2686:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,292    2686 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,293         |                     ^
2021-07-15T00:09:26,293   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,293                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,293                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,293   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-15T00:09:26,294     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-15T00:09:26,294         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,294   pgpipe/test_cython.c:2686:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,294    2686 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,294         |                     ^
2021-07-15T00:09:26,295   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,295                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,295                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,295   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T00:09:26,295     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T00:09:26,296         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,296   pgpipe/test_cython.c:2702:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,296    2702 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,296         |                         ^
2021-07-15T00:09:26,296   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,297                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,297                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,297   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T00:09:26,297     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T00:09:26,297         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,298   pgpipe/test_cython.c:2702:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,298    2702 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,298         |                         ^
2021-07-15T00:09:26,298   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,298                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,299                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,299   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-15T00:09:26,299     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-15T00:09:26,299         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,299   pgpipe/test_cython.c:2702:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,300    2702 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,300         |                         ^
2021-07-15T00:09:26,300   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,300                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,300                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,301   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T00:09:26,301     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T00:09:26,301         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,301   pgpipe/test_cython.c:2702:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,302    2702 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,302         |                         ^
2021-07-15T00:09:26,302   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,302                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,302                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,302   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T00:09:26,303     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T00:09:26,303         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,303   pgpipe/test_cython.c:2702:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,304    2702 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,304         |                         ^
2021-07-15T00:09:26,304   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,304                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,305                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,305   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-15T00:09:26,305     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-15T00:09:26,305         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:26,306   pgpipe/test_cython.c:2702:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T00:09:26,306    2702 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T00:09:26,306         |                         ^
2021-07-15T00:09:26,307   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T00:09:26,307                    from /usr/include/python3.9/Python.h:97,
2021-07-15T00:09:26,307                    from pgpipe/test_cython.c:16:
2021-07-15T00:09:26,308   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T00:09:26,308     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T00:09:26,308         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T00:09:27,727   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pgpipe/test_cython.o -o build/lib.linux-armv7l-3.9/pgpipe/test_cython.cpython-39-arm-linux-gnueabihf.so
2021-07-15T00:09:27,844   running build_scripts
2021-07-15T00:09:27,845   creating build/scripts-3.9
2021-07-15T00:09:27,846   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.9
2021-07-15T00:09:27,852   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.9
2021-07-15T00:09:27,855   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.9
2021-07-15T00:09:27,858   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.9
2021-07-15T00:09:27,862   copying pgpipe/four_gamete.py -> build/scripts-3.9
2021-07-15T00:09:27,866   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.9
2021-07-15T00:09:27,869   copying and adjusting pgpipe/bed_tasks.py -> build/scripts-3.9
2021-07-15T00:09:27,871   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.9
2021-07-15T00:09:27,874   copying and adjusting pgpipe/convert.py -> build/scripts-3.9
2021-07-15T00:09:27,876   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.9
2021-07-15T00:09:27,880   copying and adjusting pgpipe/admixture.py -> build/scripts-3.9
2021-07-15T00:09:27,882   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.9
2021-07-15T00:09:27,885   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.9
2021-07-15T00:09:27,887   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.9
2021-07-15T00:09:27,890   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.9
2021-07-15T00:09:27,893   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.9
2021-07-15T00:09:27,895   changing mode of build/scripts-3.9/vcf_filter.py from 644 to 755
2021-07-15T00:09:27,895   changing mode of build/scripts-3.9/vcf_calc.py from 644 to 755
2021-07-15T00:09:27,896   changing mode of build/scripts-3.9/vcf_split.py from 644 to 755
2021-07-15T00:09:27,896   changing mode of build/scripts-3.9/vcf_phase.py from 644 to 755
2021-07-15T00:09:27,896   changing mode of build/scripts-3.9/four_gamete.py from 644 to 755
2021-07-15T00:09:27,897   changing mode of build/scripts-3.9/stat_sampler.py from 644 to 755
2021-07-15T00:09:27,897   changing mode of build/scripts-3.9/bed_tasks.py from 644 to 755
2021-07-15T00:09:27,898   changing mode of build/scripts-3.9/informative_loci_filter.py from 644 to 755
2021-07-15T00:09:27,898   changing mode of build/scripts-3.9/convert.py from 644 to 755
2021-07-15T00:09:27,898   changing mode of build/scripts-3.9/vcf_to_ima.py from 644 to 755
2021-07-15T00:09:27,899   changing mode of build/scripts-3.9/admixture.py from 644 to 755
2021-07-15T00:09:27,899   changing mode of build/scripts-3.9/plink_ld.py from 644 to 755
2021-07-15T00:09:27,899   changing mode of build/scripts-3.9/ima3_wrapper.py from 644 to 755
2021-07-15T00:09:27,900   changing mode of build/scripts-3.9/eigenstrat_fstats.py from 644 to 755
2021-07-15T00:09:27,900   changing mode of build/scripts-3.9/vcf_liftover.py from 644 to 755
2021-07-15T00:09:27,900   changing mode of build/scripts-3.9/vcf_utilities.py from 644 to 755
2021-07-15T00:09:27,907   installing to build/bdist.linux-armv7l/wheel
2021-07-15T00:09:27,908   running install
2021-07-15T00:09:27,909   running install_lib
2021-07-15T00:09:27,913   creating build/bdist.linux-armv7l
2021-07-15T00:09:27,914   creating build/bdist.linux-armv7l/wheel
2021-07-15T00:09:27,917   creating build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,918   copying build/lib.linux-armv7l-3.9/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,921   copying build/lib.linux-armv7l-3.9/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,923   copying build/lib.linux-armv7l-3.9/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,925   copying build/lib.linux-armv7l-3.9/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,928   copying build/lib.linux-armv7l-3.9/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,931   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,933   copying build/lib.linux-armv7l-3.9/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,937   copying build/lib.linux-armv7l-3.9/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,939   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,942   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,945   copying build/lib.linux-armv7l-3.9/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,948   copying build/lib.linux-armv7l-3.9/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,951   copying build/lib.linux-armv7l-3.9/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,954   copying build/lib.linux-armv7l-3.9/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,956   copying build/lib.linux-armv7l-3.9/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,959   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,962   copying build/lib.linux-armv7l-3.9/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,964   copying build/lib.linux-armv7l-3.9/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,967   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,971   copying build/lib.linux-armv7l-3.9/pgpipe/bed_tasks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,974   copying build/lib.linux-armv7l-3.9/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,976   copying build/lib.linux-armv7l-3.9/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,980   copying build/lib.linux-armv7l-3.9/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,983   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,985   copying build/lib.linux-armv7l-3.9/pgpipe/test_cython.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,991   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,994   copying build/lib.linux-armv7l-3.9/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,997   copying build/lib.linux-armv7l-3.9/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:27,999   copying build/lib.linux-armv7l-3.9/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,002   copying build/lib.linux-armv7l-3.9/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,005   copying build/lib.linux-armv7l-3.9/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,008   copying build/lib.linux-armv7l-3.9/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,011   copying build/lib.linux-armv7l-3.9/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,014   copying build/lib.linux-armv7l-3.9/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,017   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,020   copying build/lib.linux-armv7l-3.9/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,027   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,031   copying build/lib.linux-armv7l-3.9/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,035   copying build/lib.linux-armv7l-3.9/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,038   copying build/lib.linux-armv7l-3.9/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,042   copying build/lib.linux-armv7l-3.9/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,045   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,048   copying build/lib.linux-armv7l-3.9/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,051   copying build/lib.linux-armv7l-3.9/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,053   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,056   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,059   copying build/lib.linux-armv7l-3.9/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,061   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_filter_bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,065   copying build/lib.linux-armv7l-3.9/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,068   copying build/lib.linux-armv7l-3.9/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,071   copying build/lib.linux-armv7l-3.9/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,073   copying build/lib.linux-armv7l-3.9/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,076   copying build/lib.linux-armv7l-3.9/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,078   copying build/lib.linux-armv7l-3.9/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2021-07-15T00:09:28,080   running install_egg_info
2021-07-15T00:09:28,086   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1-py3.9.egg-info
2021-07-15T00:09:28,103   running install_scripts
2021-07-15T00:09:28,132   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.data
2021-07-15T00:09:28,133   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,135   copying build/scripts-3.9/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,138   copying build/scripts-3.9/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,141   copying build/scripts-3.9/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,145   copying build/scripts-3.9/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,148   copying build/scripts-3.9/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,152   copying build/scripts-3.9/bed_tasks.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,156   copying build/scripts-3.9/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,159   copying build/scripts-3.9/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,163   copying build/scripts-3.9/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,167   copying build/scripts-3.9/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,171   copying build/scripts-3.9/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,178   copying build/scripts-3.9/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,182   copying build/scripts-3.9/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,185   copying build/scripts-3.9/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,189   copying build/scripts-3.9/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,192   copying build/scripts-3.9/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2021-07-15T00:09:28,195   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/convert.py to 755
2021-07-15T00:09:28,196   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/eigenstrat_fstats.py to 755
2021-07-15T00:09:28,197   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/plink_ld.py to 755
2021-07-15T00:09:28,198   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/stat_sampler.py to 755
2021-07-15T00:09:28,198   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_phase.py to 755
2021-07-15T00:09:28,199   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/bed_tasks.py to 755
2021-07-15T00:09:28,200   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/admixture.py to 755
2021-07-15T00:09:28,200   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_to_ima.py to 755
2021-07-15T00:09:28,201   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/four_gamete.py to 755
2021-07-15T00:09:28,202   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_utilities.py to 755
2021-07-15T00:09:28,203   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_calc.py to 755
2021-07-15T00:09:28,203   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_filter.py to 755
2021-07-15T00:09:28,204   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_liftover.py to 755
2021-07-15T00:09:28,205   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_split.py to 755
2021-07-15T00:09:28,206   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/ima3_wrapper.py to 755
2021-07-15T00:09:28,207   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/informative_loci_filter.py to 755
2021-07-15T00:09:28,238   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.dist-info/WHEEL
2021-07-15T00:09:28,241   creating '/tmp/pip-wheel-frzak5za/py_popgen-0.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-15T00:09:28,246   adding 'pgpipe/__init__.py'
2021-07-15T00:09:28,249   adding 'pgpipe/admixtools.py'
2021-07-15T00:09:28,253   adding 'pgpipe/admixture.py'
2021-07-15T00:09:28,255   adding 'pgpipe/argparse_sets.py'
2021-07-15T00:09:28,259   adding 'pgpipe/bcftools.py'
2021-07-15T00:09:28,262   adding 'pgpipe/beagle.py'
2021-07-15T00:09:28,264   adding 'pgpipe/bed_invert.py'
2021-07-15T00:09:28,267   adding 'pgpipe/bed_tasks.py'
2021-07-15T00:09:28,269   adding 'pgpipe/bedtools.py'
2021-07-15T00:09:28,272   adding 'pgpipe/convert.py'
2021-07-15T00:09:28,276   adding 'pgpipe/eigenstrat_fstats.py'
2021-07-15T00:09:28,278   adding 'pgpipe/extend_loci.py'
2021-07-15T00:09:28,280   adding 'pgpipe/fasta.py'
2021-07-15T00:09:28,282   adding 'pgpipe/fasta_utilities.py'
2021-07-15T00:09:28,284   adding 'pgpipe/filter_single_vcf.py'
2021-07-15T00:09:28,290   adding 'pgpipe/four_gamete.py'
2021-07-15T00:09:28,294   adding 'pgpipe/genome_region.py'
2021-07-15T00:09:28,297   adding 'pgpipe/get_nonmissing_chunks.py'
2021-07-15T00:09:28,299   adding 'pgpipe/graph_plotter.py'
2021-07-15T00:09:28,301   adding 'pgpipe/ima3_wrapper.py'
2021-07-15T00:09:28,303   adding 'pgpipe/ima_priors.py'
2021-07-15T00:09:28,305   adding 'pgpipe/ima_to_treemix.py'
2021-07-15T00:09:28,308   adding 'pgpipe/informative_loci_filter.py'
2021-07-15T00:09:28,310   adding 'pgpipe/logging_module.py'
2021-07-15T00:09:28,312   adding 'pgpipe/min_pop_filter.py'
2021-07-15T00:09:28,315   adding 'pgpipe/model.py'
2021-07-15T00:09:28,318   adding 'pgpipe/model_creator.py'
2021-07-15T00:09:28,321   adding 'pgpipe/model_sampler.py'
2021-07-15T00:09:28,323   adding 'pgpipe/parse_functions.py'
2021-07-15T00:09:28,325   adding 'pgpipe/picard.py'
2021-07-15T00:09:28,329   adding 'pgpipe/plink.py'
2021-07-15T00:09:28,333   adding 'pgpipe/plink_ld.py'
2021-07-15T00:09:28,335   adding 'pgpipe/shapeit.py'
2021-07-15T00:09:28,337   adding 'pgpipe/site_stats.py'
2021-07-15T00:09:28,341   adding 'pgpipe/stat_sampler.py'
2021-07-15T00:09:28,343   adding 'pgpipe/subtract_bed.py'
2021-07-15T00:09:28,360   adding 'pgpipe/test_cython.c'
2021-07-15T00:09:28,385   adding 'pgpipe/test_cython.cpython-39-arm-linux-gnueabihf.so'
2021-07-15T00:09:28,388   adding 'pgpipe/test_cython.pyx'
2021-07-15T00:09:28,392   adding 'pgpipe/vcf_calc.py'
2021-07-15T00:09:28,398   adding 'pgpipe/vcf_filter.py'
2021-07-15T00:09:28,403   adding 'pgpipe/vcf_filter_bcftools.py'
2021-07-15T00:09:28,408   adding 'pgpipe/vcf_filter_vcftools.py'
2021-07-15T00:09:28,411   adding 'pgpipe/vcf_liftover.py'
2021-07-15T00:09:28,417   adding 'pgpipe/vcf_phase.py'
2021-07-15T00:09:28,421   adding 'pgpipe/vcf_reader_func.py'
2021-07-15T00:09:28,424   adding 'pgpipe/vcf_ref_to_seq.py'
2021-07-15T00:09:28,428   adding 'pgpipe/vcf_sampler.py'
2021-07-15T00:09:28,432   adding 'pgpipe/vcf_split.py'
2021-07-15T00:09:28,435   adding 'pgpipe/vcf_split_pysam.py'
2021-07-15T00:09:28,440   adding 'pgpipe/vcf_to_ima.py'
2021-07-15T00:09:28,443   adding 'pgpipe/vcf_to_treemix.py'
2021-07-15T00:09:28,445   adding 'pgpipe/vcf_utilities.py'
2021-07-15T00:09:28,450   adding 'pgpipe/vcftools.py'
2021-07-15T00:09:28,454   adding 'py_popgen-0.1.data/scripts/admixture.py'
2021-07-15T00:09:28,457   adding 'py_popgen-0.1.data/scripts/bed_tasks.py'
2021-07-15T00:09:28,460   adding 'py_popgen-0.1.data/scripts/convert.py'
2021-07-15T00:09:28,464   adding 'py_popgen-0.1.data/scripts/eigenstrat_fstats.py'
2021-07-15T00:09:28,470   adding 'py_popgen-0.1.data/scripts/four_gamete.py'
2021-07-15T00:09:28,471   adding 'py_popgen-0.1.data/scripts/ima3_wrapper.py'
2021-07-15T00:09:28,474   adding 'py_popgen-0.1.data/scripts/informative_loci_filter.py'
2021-07-15T00:09:28,477   adding 'py_popgen-0.1.data/scripts/plink_ld.py'
2021-07-15T00:09:28,480   adding 'py_popgen-0.1.data/scripts/stat_sampler.py'
2021-07-15T00:09:28,484   adding 'py_popgen-0.1.data/scripts/vcf_calc.py'
2021-07-15T00:09:28,489   adding 'py_popgen-0.1.data/scripts/vcf_filter.py'
2021-07-15T00:09:28,492   adding 'py_popgen-0.1.data/scripts/vcf_liftover.py'
2021-07-15T00:09:28,498   adding 'py_popgen-0.1.data/scripts/vcf_phase.py'
2021-07-15T00:09:28,501   adding 'py_popgen-0.1.data/scripts/vcf_split.py'
2021-07-15T00:09:28,505   adding 'py_popgen-0.1.data/scripts/vcf_to_ima.py'
2021-07-15T00:09:28,507   adding 'py_popgen-0.1.data/scripts/vcf_utilities.py'
2021-07-15T00:09:28,510   adding 'py_popgen-0.1.dist-info/METADATA'
2021-07-15T00:09:28,511   adding 'py_popgen-0.1.dist-info/WHEEL'
2021-07-15T00:09:28,512   adding 'py_popgen-0.1.dist-info/top_level.txt'
2021-07-15T00:09:28,513   adding 'py_popgen-0.1.dist-info/RECORD'
2021-07-15T00:09:28,521   removing build/bdist.linux-armv7l/wheel
2021-07-15T00:09:28,663   Building wheel for py-popgen (setup.py): finished with status 'done'
2021-07-15T00:09:28,670   Created wheel for py-popgen: filename=py_popgen-0.1-cp39-cp39-linux_armv7l.whl size=327115 sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d
2021-07-15T00:09:28,670   Stored in directory: /tmp/pip-ephem-wheel-cache-1hvdnm3e/wheels/d8/25/d2/0dc6b610366b79b4c8a14afe8c4ab09dbec5b298790341ed29
2021-07-15T00:09:28,685 Successfully built py-popgen
2021-07-15T00:09:28,708 Removed build tracker: '/tmp/pip-req-tracker-u1npkfej'