2021-07-15T01:45:21,714 Created temporary directory: /tmp/pip-ephem-wheel-cache-_d0rh5r2 2021-07-15T01:45:21,717 Created temporary directory: /tmp/pip-req-tracker-j1rjppus 2021-07-15T01:45:21,717 Initialized build tracking at /tmp/pip-req-tracker-j1rjppus 2021-07-15T01:45:21,717 Created build tracker: /tmp/pip-req-tracker-j1rjppus 2021-07-15T01:45:21,718 Entered build tracker: /tmp/pip-req-tracker-j1rjppus 2021-07-15T01:45:21,718 Created temporary directory: /tmp/pip-wheel-727cm3pa 2021-07-15T01:45:21,748 1 location(s) to search for versions of amlearn: 2021-07-15T01:45:21,748 * https://pypi.org/simple/amlearn/ 2021-07-15T01:45:21,748 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2021-07-15T01:45:21,749 Getting page https://pypi.org/simple/amlearn/ 2021-07-15T01:45:21,750 Found index url https://pypi.org/simple 2021-07-15T01:45:21,843 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz#sha256=3feb0259f07d515171eb3f5dbcd60a40a90a2c04b9114be537d617d1df4addee (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2021-07-15T01:45:21,844 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz#sha256=20a099bc7da2324c247c1f5bd4c61cbf207ad59248a0c161fac0a08d11112f36 (from https://pypi.org/simple/amlearn/), version: 0.1.0 2021-07-15T01:45:21,844 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz#sha256=02a6393944cbf8a784db0d554708f37a035c9203518531e46e870bc1453cef7f (from https://pypi.org/simple/amlearn/), version: 0.2.0 2021-07-15T01:45:21,844 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz#sha256=036b1f5f9152145124dc681a3345d518f374c1a8785f602addf4bc27494917f3 (from https://pypi.org/simple/amlearn/), version: 0.2.1 2021-07-15T01:45:21,845 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz#sha256=1ad6512e2146f4e145e097463f4575427820335c59fca3e6bfb41806c786799d (from https://pypi.org/simple/amlearn/), version: 0.2.2 2021-07-15T01:45:21,845 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 (from https://pypi.org/simple/amlearn/), version: 0.2.3 2021-07-15T01:45:21,845 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 (from https://pypi.org/simple/amlearn/), version: 0.2.4 2021-07-15T01:45:21,845 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c (from https://pypi.org/simple/amlearn/), version: 0.2.5 2021-07-15T01:45:21,846 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba (from https://pypi.org/simple/amlearn/), version: 0.2.6 2021-07-15T01:45:21,846 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 (from https://pypi.org/simple/amlearn/), version: 0.3.1 2021-07-15T01:45:21,846 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e (from https://pypi.org/simple/amlearn/), version: 0.3.2 2021-07-15T01:45:21,846 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d (from https://pypi.org/simple/amlearn/), version: 0.3.3 2021-07-15T01:45:21,847 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 (from https://pypi.org/simple/amlearn/), version: 0.3.4 2021-07-15T01:45:21,847 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2021-07-15T01:45:21,866 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2021-07-15T01:45:21,885 Collecting amlearn==0.2.3 2021-07-15T01:45:21,886 Created temporary directory: /tmp/pip-unpack-neqir1hg 2021-07-15T01:45:22,089 Downloading amlearn-0.2.3.tar.gz (82 kB) 2021-07-15T01:45:22,272 Added amlearn==0.2.3 from https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 to build tracker '/tmp/pip-req-tracker-j1rjppus' 2021-07-15T01:45:22,273 Running setup.py (path:/tmp/pip-wheel-727cm3pa/amlearn_d34e5a687b1d4345957fbcf4b4ff5086/setup.py) egg_info for package amlearn 2021-07-15T01:45:22,273 Created temporary directory: /tmp/pip-pip-egg-info-yq9js6w7 2021-07-15T01:45:22,274 Running command python setup.py egg_info 2021-07-15T01:45:23,891 running egg_info 2021-07-15T01:45:23,893 running build_src 2021-07-15T01:45:23,896 build_src 2021-07-15T01:45:23,896 building extension "amlearn.featurize.src.utils" sources 2021-07-15T01:45:23,896 f2py options: [] 2021-07-15T01:45:23,896 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T01:45:23,896 creating build 2021-07-15T01:45:23,897 creating build/src.linux-armv7l-3.9 2021-07-15T01:45:23,898 creating build/src.linux-armv7l-3.9/amlearn 2021-07-15T01:45:23,898 creating build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:23,899 creating build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T01:45:24,091 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:24,092 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:24,093 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T01:45:24,093 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T01:45:24,133 appenddecl: "dimension" not implemented. 2021-07-15T01:45:24,145 appenddecl: "dimension" not implemented. 2021-07-15T01:45:24,149 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:24,150 appenddecl: "dimension" not implemented. 2021-07-15T01:45:24,372 Reading fortran codes... 2021-07-15T01:45:24,372 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T01:45:24,373 Post-processing... 2021-07-15T01:45:24,373 Block: utils 2021-07-15T01:45:24,373 Block: determinant_func 2021-07-15T01:45:24,373 Block: determinant 2021-07-15T01:45:24,373 Block: distance 2021-07-15T01:45:24,373 Block: distance_info 2021-07-15T01:45:24,374 Block: quicksort 2021-07-15T01:45:24,374 Block: quick_sort 2021-07-15T01:45:24,374 Block: cg_function 2021-07-15T01:45:24,374 Block: calculate_cg 2021-07-15T01:45:24,374 Block: angle 2021-07-15T01:45:24,375 Block: angle_info 2021-07-15T01:45:24,375 Block: c_stats 2021-07-15T01:45:24,375 Block: customize_stats 2021-07-15T01:45:24,375 Block: a_stats 2021-07-15T01:45:24,375 Block: all_stats 2021-07-15T01:45:24,375 Post-processing (stage 2)... 2021-07-15T01:45:24,376 Block: utils 2021-07-15T01:45:24,376 Block: unknown_interface 2021-07-15T01:45:24,376 Block: determinant_func 2021-07-15T01:45:24,376 Block: determinant 2021-07-15T01:45:24,376 Block: distance 2021-07-15T01:45:24,376 Block: distance_info 2021-07-15T01:45:24,377 Block: quicksort 2021-07-15T01:45:24,377 Block: quick_sort 2021-07-15T01:45:24,377 Block: cg_function 2021-07-15T01:45:24,377 Block: calculate_cg 2021-07-15T01:45:24,377 Block: angle 2021-07-15T01:45:24,378 Block: angle_info 2021-07-15T01:45:24,378 Block: c_stats 2021-07-15T01:45:24,378 Block: customize_stats 2021-07-15T01:45:24,378 Block: a_stats 2021-07-15T01:45:24,378 Block: all_stats 2021-07-15T01:45:24,379 Building modules... 2021-07-15T01:45:24,379 Building module "utils"... 2021-07-15T01:45:24,379 Constructing F90 module support for "determinant_func"... 2021-07-15T01:45:24,379 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T01:45:24,379 deter_value = determinant(matrix) 2021-07-15T01:45:24,379 Constructing F90 module support for "distance"... 2021-07-15T01:45:24,380 Constructing wrapper function "distance.distance_info"... 2021-07-15T01:45:24,380 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:24,380 Constructing F90 module support for "quicksort"... 2021-07-15T01:45:24,380 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T01:45:24,380 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T01:45:24,380 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T01:45:24,381 Constructing F90 module support for "cg_function"... 2021-07-15T01:45:24,381 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T01:45:24,381 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T01:45:24,381 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T01:45:24,381 Constructing F90 module support for "angle"... 2021-07-15T01:45:24,382 Constructing wrapper function "angle.angle_info"... 2021-07-15T01:45:24,382 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:24,382 Constructing F90 module support for "c_stats"... 2021-07-15T01:45:24,382 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T01:45:24,382 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T01:45:24,382 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T01:45:24,382 Constructing F90 module support for "a_stats"... 2021-07-15T01:45:24,383 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T01:45:24,383 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T01:45:24,383 stats = all_stats(list,[len_bn]) 2021-07-15T01:45:24,383 Wrote C/API module "utils" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c" 2021-07-15T01:45:24,383 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90" 2021-07-15T01:45:24,383 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:24,384 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:24,384 creating build/src.linux-armv7l-3.9/build 2021-07-15T01:45:24,384 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T01:45:24,384 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T01:45:24,384 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:24,385 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T01:45:24,385 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T01:45:24,385 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T01:45:24,385 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T01:45:24,385 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T01:45:24,385 f2py options: [] 2021-07-15T01:45:24,385 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c 2021-07-15T01:45:24,582 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:24,584 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:24,584 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T01:45:24,585 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T01:45:24,636 appenddecl: "dimension" not implemented. 2021-07-15T01:45:24,642 appenddecl: "dimension" not implemented. 2021-07-15T01:45:24,645 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:24,646 appenddecl: "dimension" not implemented. 2021-07-15T01:45:24,962 Reading fortran codes... 2021-07-15T01:45:24,962 Reading file 'amlearn/featurize/src/voronoi_nn.f90' (format:free) 2021-07-15T01:45:24,963 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T01:45:24,963 Line #49 in amlearn/featurize/src/voronoi_nn.f90:" use :: distance " 2021-07-15T01:45:24,963 analyzeline: Could not crack the use statement. 2021-07-15T01:45:24,963 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T01:45:24,963 Post-processing... 2021-07-15T01:45:24,964 Block: voronoi_nn 2021-07-15T01:45:24,964 Block: determinant 2021-07-15T01:45:24,964 Block: voronoi 2021-07-15T01:45:24,964 Block: determinant_func 2021-07-15T01:45:24,964 Block: determinant 2021-07-15T01:45:24,964 Block: distance 2021-07-15T01:45:24,965 Block: distance_info 2021-07-15T01:45:24,965 Block: quicksort 2021-07-15T01:45:24,965 Block: quick_sort 2021-07-15T01:45:24,965 Block: cg_function 2021-07-15T01:45:24,965 Block: calculate_cg 2021-07-15T01:45:24,965 Block: angle 2021-07-15T01:45:24,965 Block: angle_info 2021-07-15T01:45:24,965 Block: c_stats 2021-07-15T01:45:24,965 Block: customize_stats 2021-07-15T01:45:24,966 Block: a_stats 2021-07-15T01:45:24,966 Block: all_stats 2021-07-15T01:45:24,966 Post-processing (stage 2)... 2021-07-15T01:45:24,966 Block: voronoi_nn 2021-07-15T01:45:24,966 Block: unknown_interface 2021-07-15T01:45:24,966 Block: determinant 2021-07-15T01:45:24,966 Block: voronoi 2021-07-15T01:45:24,966 Block: determinant_func 2021-07-15T01:45:24,966 Block: determinant 2021-07-15T01:45:24,967 Block: distance 2021-07-15T01:45:24,967 Block: distance_info 2021-07-15T01:45:24,967 Block: quicksort 2021-07-15T01:45:24,967 Block: quick_sort 2021-07-15T01:45:24,967 Block: cg_function 2021-07-15T01:45:24,967 Block: calculate_cg 2021-07-15T01:45:24,967 Block: angle 2021-07-15T01:45:24,967 Block: angle_info 2021-07-15T01:45:24,967 Block: c_stats 2021-07-15T01:45:24,968 Block: customize_stats 2021-07-15T01:45:24,968 Block: a_stats 2021-07-15T01:45:24,968 Block: all_stats 2021-07-15T01:45:24,968 Building modules... 2021-07-15T01:45:24,968 Building module "voronoi_nn"... 2021-07-15T01:45:24,968 Constructing wrapper function "determinant"... 2021-07-15T01:45:24,969 deter_value = determinant(face) 2021-07-15T01:45:24,969 Constructing wrapper function "voronoi"... 2021-07-15T01:45:24,969 n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists,n_neighbor_max,n_edge_max = voronoi(atom_type,atom_coords,cutoff,allow_neighbor_limit,small_face_thres,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists,n_neighbor_max,n_edge_max,[n_atoms,n_neighbor_limit]) 2021-07-15T01:45:24,969 Constructing F90 module support for "determinant_func"... 2021-07-15T01:45:24,969 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T01:45:24,969 deter_value = determinant(matrix) 2021-07-15T01:45:24,969 Constructing F90 module support for "distance"... 2021-07-15T01:45:24,969 Constructing wrapper function "distance.distance_info"... 2021-07-15T01:45:24,969 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:24,970 Constructing F90 module support for "quicksort"... 2021-07-15T01:45:24,970 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T01:45:24,970 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T01:45:24,970 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T01:45:24,970 Constructing F90 module support for "cg_function"... 2021-07-15T01:45:24,970 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T01:45:24,970 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T01:45:24,970 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T01:45:24,970 Constructing F90 module support for "angle"... 2021-07-15T01:45:24,971 Constructing wrapper function "angle.angle_info"... 2021-07-15T01:45:24,971 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:24,971 Constructing F90 module support for "c_stats"... 2021-07-15T01:45:24,971 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T01:45:24,971 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T01:45:24,971 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T01:45:24,971 Constructing F90 module support for "a_stats"... 2021-07-15T01:45:24,971 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T01:45:24,971 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T01:45:24,972 stats = all_stats(list,[len_bn]) 2021-07-15T01:45:24,972 Wrote C/API module "voronoi_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c" 2021-07-15T01:45:24,972 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90" 2021-07-15T01:45:24,972 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:24,972 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:24,972 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T01:45:24,972 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T01:45:24,972 f2py options: [] 2021-07-15T01:45:24,972 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c 2021-07-15T01:45:25,183 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:25,184 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:25,185 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T01:45:25,185 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T01:45:25,227 sortvarnames: failed to compute dependencies because of cyclic dependencies between target_voro_idx, voronoi_index_list, motif_one_hot, n_voro, n_target, n_atoms 2021-07-15T01:45:25,288 appenddecl: "dimension" not implemented. 2021-07-15T01:45:25,300 appenddecl: "dimension" not implemented. 2021-07-15T01:45:25,304 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:25,305 appenddecl: "dimension" not implemented. 2021-07-15T01:45:25,960 Reading fortran codes... 2021-07-15T01:45:25,960 Reading file 'amlearn/featurize/src/voronoi_stats.f90' (format:free) 2021-07-15T01:45:25,960 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T01:45:25,960 Line #205 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T01:45:25,960 analyzeline: Could not crack the use statement. 2021-07-15T01:45:25,961 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T01:45:25,961 Line #230 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T01:45:25,961 analyzeline: Could not crack the use statement. 2021-07-15T01:45:25,961 {'before': '', 'this': 'use', 'after': ':: a_stats, only : all_stats '} 2021-07-15T01:45:25,961 Line #318 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only : all_stats " 2021-07-15T01:45:25,961 analyzeline: Could not crack the use statement. 2021-07-15T01:45:25,962 {'before': '', 'this': 'use', 'after': ':: c_stats, only : customize_stats '} 2021-07-15T01:45:25,962 Line #320 in amlearn/featurize/src/voronoi_stats.f90:" use :: c_stats, only : customize_stats " 2021-07-15T01:45:25,962 analyzeline: Could not crack the use statement. 2021-07-15T01:45:25,962 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T01:45:25,962 Post-processing... 2021-07-15T01:45:25,962 Block: voronoi_stats 2021-07-15T01:45:25,962 Block: voronoi_index 2021-07-15T01:45:25,962 Block: i_fold_symmetry 2021-07-15T01:45:25,963 Block: line_percent 2021-07-15T01:45:25,963 {} 2021-07-15T01:45:25,963 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T01:45:25,963 vars2fortran: No typespec for argument "n_voro". 2021-07-15T01:45:25,963 {} 2021-07-15T01:45:25,963 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T01:45:25,963 vars2fortran: No typespec for argument "n_target". 2021-07-15T01:45:25,963 Block: character_motif 2021-07-15T01:45:25,964 Block: area_wt_i_fold_symmetry 2021-07-15T01:45:25,964 Block: vol_wt_i_fold_symmetry 2021-07-15T01:45:25,964 Block: voronoi_area_stats 2021-07-15T01:45:25,964 Block: voronoi_area_stats_separate 2021-07-15T01:45:25,964 Block: voronoi_vol_stats 2021-07-15T01:45:25,964 Block: voronoi_vol_stats_separate 2021-07-15T01:45:25,964 Block: voronoi_distance_stats 2021-07-15T01:45:25,964 Block: determinant_func 2021-07-15T01:45:25,964 Block: determinant 2021-07-15T01:45:25,965 Block: distance 2021-07-15T01:45:25,965 Block: distance_info 2021-07-15T01:45:25,965 Block: quicksort 2021-07-15T01:45:25,965 Block: quick_sort 2021-07-15T01:45:25,965 Block: cg_function 2021-07-15T01:45:25,965 Block: calculate_cg 2021-07-15T01:45:25,966 Block: angle 2021-07-15T01:45:25,966 Block: angle_info 2021-07-15T01:45:25,966 Block: c_stats 2021-07-15T01:45:25,966 Block: customize_stats 2021-07-15T01:45:25,966 Block: a_stats 2021-07-15T01:45:25,966 Block: all_stats 2021-07-15T01:45:25,966 Post-processing (stage 2)... 2021-07-15T01:45:25,966 Block: voronoi_stats 2021-07-15T01:45:25,966 Block: unknown_interface 2021-07-15T01:45:25,967 Block: voronoi_index 2021-07-15T01:45:25,967 Block: i_fold_symmetry 2021-07-15T01:45:25,967 Block: line_percent 2021-07-15T01:45:25,967 Block: character_motif 2021-07-15T01:45:25,967 Block: area_wt_i_fold_symmetry 2021-07-15T01:45:25,967 Block: vol_wt_i_fold_symmetry 2021-07-15T01:45:25,967 Block: voronoi_area_stats 2021-07-15T01:45:25,967 Block: voronoi_area_stats_separate 2021-07-15T01:45:25,967 Block: voronoi_vol_stats 2021-07-15T01:45:25,968 Block: voronoi_vol_stats_separate 2021-07-15T01:45:25,968 Block: voronoi_distance_stats 2021-07-15T01:45:25,968 Block: determinant_func 2021-07-15T01:45:25,968 Block: determinant 2021-07-15T01:45:25,968 Block: distance 2021-07-15T01:45:25,968 Block: distance_info 2021-07-15T01:45:25,968 Block: quicksort 2021-07-15T01:45:25,968 Block: quick_sort 2021-07-15T01:45:25,968 Block: cg_function 2021-07-15T01:45:25,969 Block: calculate_cg 2021-07-15T01:45:25,969 Block: angle 2021-07-15T01:45:25,969 Block: angle_info 2021-07-15T01:45:25,969 Block: c_stats 2021-07-15T01:45:25,969 Block: customize_stats 2021-07-15T01:45:25,969 Block: a_stats 2021-07-15T01:45:25,969 Block: all_stats 2021-07-15T01:45:25,969 Building modules... 2021-07-15T01:45:25,969 Building module "voronoi_stats"... 2021-07-15T01:45:25,970 Constructing wrapper function "voronoi_index"... 2021-07-15T01:45:25,970 voronoi_index_list = voronoi_index(voronoi_index_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T01:45:25,970 Constructing wrapper function "i_fold_symmetry"... 2021-07-15T01:45:25,970 i_symm_list = i_fold_symmetry(i_symm_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T01:45:25,970 Constructing wrapper function "line_percent"... 2021-07-15T01:45:25,970 percent_list = line_percent(percent_list,value_list,[n_atoms,n_values]) 2021-07-15T01:45:25,970 Constructing wrapper function "character_motif"... 2021-07-15T01:45:25,970 motif_one_hot = character_motif(motif_one_hot,voronoi_index_list,edge_min,target_voro_idx,frank_kasper,[n_atoms,n_voro,n_target]) 2021-07-15T01:45:25,970 Constructing wrapper function "area_wt_i_fold_symmetry"... 2021-07-15T01:45:25,971 area_wt_i_symm_list = area_wt_i_fold_symmetry(area_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T01:45:25,971 Constructing wrapper function "vol_wt_i_fold_symmetry"... 2021-07-15T01:45:25,971 vol_wt_i_symm_list = vol_wt_i_fold_symmetry(vol_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T01:45:25,971 Constructing wrapper function "voronoi_area_stats"... 2021-07-15T01:45:25,971 area_stats = voronoi_area_stats(area_stats,n_neighbor_list,neighbor_area_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T01:45:25,971 Constructing wrapper function "voronoi_area_stats_separate"... 2021-07-15T01:45:25,971 area_stats_separate = voronoi_area_stats_separate(area_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T01:45:25,971 Constructing wrapper function "voronoi_vol_stats"... 2021-07-15T01:45:25,971 vol_stats = voronoi_vol_stats(vol_stats,n_neighbor_list,neighbor_vol_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T01:45:25,972 Constructing wrapper function "voronoi_vol_stats_separate"... 2021-07-15T01:45:25,972 vol_stats_separate = voronoi_vol_stats_separate(vol_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T01:45:25,972 Constructing wrapper function "voronoi_distance_stats"... 2021-07-15T01:45:25,972 distance_stats = voronoi_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T01:45:25,972 Constructing F90 module support for "determinant_func"... 2021-07-15T01:45:25,972 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T01:45:25,972 deter_value = determinant(matrix) 2021-07-15T01:45:25,972 Constructing F90 module support for "distance"... 2021-07-15T01:45:25,972 Constructing wrapper function "distance.distance_info"... 2021-07-15T01:45:25,973 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:25,973 Constructing F90 module support for "quicksort"... 2021-07-15T01:45:25,973 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T01:45:25,973 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T01:45:25,973 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T01:45:25,973 Constructing F90 module support for "cg_function"... 2021-07-15T01:45:25,973 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T01:45:25,973 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T01:45:25,974 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T01:45:25,974 Constructing F90 module support for "angle"... 2021-07-15T01:45:25,974 Constructing wrapper function "angle.angle_info"... 2021-07-15T01:45:25,974 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:25,974 Constructing F90 module support for "c_stats"... 2021-07-15T01:45:25,974 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T01:45:25,974 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T01:45:25,974 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T01:45:25,974 Constructing F90 module support for "a_stats"... 2021-07-15T01:45:25,975 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T01:45:25,975 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T01:45:25,975 stats = all_stats(list,[len_bn]) 2021-07-15T01:45:25,975 Wrote C/API module "voronoi_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c" 2021-07-15T01:45:25,975 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90" 2021-07-15T01:45:25,975 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:25,975 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:25,975 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T01:45:25,976 building extension "amlearn.featurize.src.boop" sources 2021-07-15T01:45:25,976 f2py options: [] 2021-07-15T01:45:25,976 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c 2021-07-15T01:45:26,327 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:26,328 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:26,329 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T01:45:26,329 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T01:45:26,376 appenddecl: "dimension" not implemented. 2021-07-15T01:45:26,383 appenddecl: "dimension" not implemented. 2021-07-15T01:45:26,386 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:26,387 appenddecl: "dimension" not implemented. 2021-07-15T01:45:26,669 Reading fortran codes... 2021-07-15T01:45:26,669 Reading file 'amlearn/featurize/src/boop.f90' (format:free) 2021-07-15T01:45:26,669 {'before': '', 'this': 'use', 'after': ':: angle '} 2021-07-15T01:45:26,670 Line #9 in amlearn/featurize/src/boop.f90:" use :: angle " 2021-07-15T01:45:26,670 analyzeline: Could not crack the use statement. 2021-07-15T01:45:26,670 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T01:45:26,670 Post-processing... 2021-07-15T01:45:26,670 Block: boop 2021-07-15T01:45:26,670 Block: calculate_boop 2021-07-15T01:45:26,670 Block: determinant_func 2021-07-15T01:45:26,671 Block: determinant 2021-07-15T01:45:26,671 Block: distance 2021-07-15T01:45:26,671 Block: distance_info 2021-07-15T01:45:26,671 Block: quicksort 2021-07-15T01:45:26,671 Block: quick_sort 2021-07-15T01:45:26,671 Block: cg_function 2021-07-15T01:45:26,672 Block: calculate_cg 2021-07-15T01:45:26,672 Block: angle 2021-07-15T01:45:26,672 Block: angle_info 2021-07-15T01:45:26,672 Block: c_stats 2021-07-15T01:45:26,672 Block: customize_stats 2021-07-15T01:45:26,672 Block: a_stats 2021-07-15T01:45:26,673 Block: all_stats 2021-07-15T01:45:26,673 Post-processing (stage 2)... 2021-07-15T01:45:26,673 Block: boop 2021-07-15T01:45:26,673 Block: unknown_interface 2021-07-15T01:45:26,673 Block: calculate_boop 2021-07-15T01:45:26,673 Block: determinant_func 2021-07-15T01:45:26,673 Block: determinant 2021-07-15T01:45:26,673 Block: distance 2021-07-15T01:45:26,673 Block: distance_info 2021-07-15T01:45:26,674 Block: quicksort 2021-07-15T01:45:26,674 Block: quick_sort 2021-07-15T01:45:26,674 Block: cg_function 2021-07-15T01:45:26,674 Block: calculate_cg 2021-07-15T01:45:26,674 Block: angle 2021-07-15T01:45:26,674 Block: angle_info 2021-07-15T01:45:26,674 Block: c_stats 2021-07-15T01:45:26,674 Block: customize_stats 2021-07-15T01:45:26,674 Block: a_stats 2021-07-15T01:45:26,675 Block: all_stats 2021-07-15T01:45:26,675 Building modules... 2021-07-15T01:45:26,675 Building module "boop"... 2021-07-15T01:45:26,675 Constructing wrapper function "calculate_boop"... 2021-07-15T01:45:26,675 ql,wlbar,coarse_ql,coarse_wlbar = calculate_boop(atom_coords,pbc,bds,n_neighbor_list,neighbor_lists,low_order,higher_order,coarse_lower_order,coarse_higher_order,ql,wlbar,coarse_ql,coarse_wlbar,[n_atoms,n_neighbor_limit]) 2021-07-15T01:45:26,675 Constructing F90 module support for "determinant_func"... 2021-07-15T01:45:26,675 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T01:45:26,675 deter_value = determinant(matrix) 2021-07-15T01:45:26,675 Constructing F90 module support for "distance"... 2021-07-15T01:45:26,676 Constructing wrapper function "distance.distance_info"... 2021-07-15T01:45:26,676 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:26,676 Constructing F90 module support for "quicksort"... 2021-07-15T01:45:26,676 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T01:45:26,676 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T01:45:26,676 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T01:45:26,676 Constructing F90 module support for "cg_function"... 2021-07-15T01:45:26,676 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T01:45:26,676 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T01:45:26,677 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T01:45:26,677 Constructing F90 module support for "angle"... 2021-07-15T01:45:26,677 Constructing wrapper function "angle.angle_info"... 2021-07-15T01:45:26,677 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:26,677 Constructing F90 module support for "c_stats"... 2021-07-15T01:45:26,677 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T01:45:26,677 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T01:45:26,677 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T01:45:26,677 Constructing F90 module support for "a_stats"... 2021-07-15T01:45:26,678 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T01:45:26,678 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T01:45:26,678 stats = all_stats(list,[len_bn]) 2021-07-15T01:45:26,678 Wrote C/API module "boop" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c" 2021-07-15T01:45:26,678 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90" 2021-07-15T01:45:26,678 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:26,678 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:26,678 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T01:45:26,678 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T01:45:26,679 f2py options: [] 2021-07-15T01:45:26,679 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c 2021-07-15T01:45:26,777 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:26,778 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:26,779 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T01:45:26,779 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T01:45:26,822 appenddecl: "dimension" not implemented. 2021-07-15T01:45:26,833 appenddecl: "dimension" not implemented. 2021-07-15T01:45:26,837 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:26,838 appenddecl: "dimension" not implemented. 2021-07-15T01:45:27,096 Reading fortran codes... 2021-07-15T01:45:27,096 Reading file 'amlearn/featurize/src/mro_stats.f90' (format:free) 2021-07-15T01:45:27,097 {'before': '', 'this': 'use', 'after': ':: c_stats '} 2021-07-15T01:45:27,097 Line #5 in amlearn/featurize/src/mro_stats.f90:" use :: c_stats " 2021-07-15T01:45:27,097 analyzeline: Could not crack the use statement. 2021-07-15T01:45:27,097 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T01:45:27,097 Post-processing... 2021-07-15T01:45:27,097 Block: mro_stats 2021-07-15T01:45:27,097 {'attrspec': ['intent(in)']} 2021-07-15T01:45:27,098 In: :mro_stats:amlearn/featurize/src/mro_stats.f90:sro_to_mro 2021-07-15T01:45:27,098 vars2fortran: No typespec for argument "n_neighbor_limit". 2021-07-15T01:45:27,098 Block: sro_to_mro 2021-07-15T01:45:27,098 Block: determinant_func 2021-07-15T01:45:27,098 Block: determinant 2021-07-15T01:45:27,098 Block: distance 2021-07-15T01:45:27,099 Block: distance_info 2021-07-15T01:45:27,099 Block: quicksort 2021-07-15T01:45:27,099 Block: quick_sort 2021-07-15T01:45:27,099 Block: cg_function 2021-07-15T01:45:27,099 Block: calculate_cg 2021-07-15T01:45:27,099 Block: angle 2021-07-15T01:45:27,100 Block: angle_info 2021-07-15T01:45:27,100 Block: c_stats 2021-07-15T01:45:27,100 Block: customize_stats 2021-07-15T01:45:27,100 Block: a_stats 2021-07-15T01:45:27,100 Block: all_stats 2021-07-15T01:45:27,100 Post-processing (stage 2)... 2021-07-15T01:45:27,100 Block: mro_stats 2021-07-15T01:45:27,100 Block: unknown_interface 2021-07-15T01:45:27,100 Block: sro_to_mro 2021-07-15T01:45:27,101 Block: determinant_func 2021-07-15T01:45:27,101 Block: determinant 2021-07-15T01:45:27,101 Block: distance 2021-07-15T01:45:27,101 Block: distance_info 2021-07-15T01:45:27,101 Block: quicksort 2021-07-15T01:45:27,101 Block: quick_sort 2021-07-15T01:45:27,101 Block: cg_function 2021-07-15T01:45:27,101 Block: calculate_cg 2021-07-15T01:45:27,101 Block: angle 2021-07-15T01:45:27,101 Block: angle_info 2021-07-15T01:45:27,102 Block: c_stats 2021-07-15T01:45:27,102 Block: customize_stats 2021-07-15T01:45:27,102 Block: a_stats 2021-07-15T01:45:27,102 Block: all_stats 2021-07-15T01:45:27,102 Building modules... 2021-07-15T01:45:27,102 Building module "mro_stats"... 2021-07-15T01:45:27,102 Constructing wrapper function "sro_to_mro"... 2021-07-15T01:45:27,102 mro_feature = sro_to_mro(sro_feature,n_neighbor_list,neighbor_lists,stats_types,mro_feature,[n_atoms,n_neighbor_limit,sum_stats_types]) 2021-07-15T01:45:27,102 Constructing F90 module support for "determinant_func"... 2021-07-15T01:45:27,103 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T01:45:27,103 deter_value = determinant(matrix) 2021-07-15T01:45:27,103 Constructing F90 module support for "distance"... 2021-07-15T01:45:27,103 Constructing wrapper function "distance.distance_info"... 2021-07-15T01:45:27,103 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:27,103 Constructing F90 module support for "quicksort"... 2021-07-15T01:45:27,103 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T01:45:27,103 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T01:45:27,104 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T01:45:27,104 Constructing F90 module support for "cg_function"... 2021-07-15T01:45:27,104 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T01:45:27,104 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T01:45:27,104 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T01:45:27,104 Constructing F90 module support for "angle"... 2021-07-15T01:45:27,104 Constructing wrapper function "angle.angle_info"... 2021-07-15T01:45:27,104 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:27,104 Constructing F90 module support for "c_stats"... 2021-07-15T01:45:27,105 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T01:45:27,105 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T01:45:27,105 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T01:45:27,105 Constructing F90 module support for "a_stats"... 2021-07-15T01:45:27,105 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T01:45:27,105 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T01:45:27,105 stats = all_stats(list,[len_bn]) 2021-07-15T01:45:27,105 Wrote C/API module "mro_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c" 2021-07-15T01:45:27,105 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90" 2021-07-15T01:45:27,106 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:27,106 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:27,106 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T01:45:27,106 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T01:45:27,106 f2py options: [] 2021-07-15T01:45:27,106 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c 2021-07-15T01:45:27,213 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:27,214 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:27,215 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T01:45:27,215 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T01:45:27,245 appenddecl: "dimension" not implemented. 2021-07-15T01:45:27,252 appenddecl: "dimension" not implemented. 2021-07-15T01:45:27,255 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:27,256 appenddecl: "dimension" not implemented. 2021-07-15T01:45:27,515 Reading fortran codes... 2021-07-15T01:45:27,515 Reading file 'amlearn/featurize/src/neighbor_data.f90' (format:free) 2021-07-15T01:45:27,515 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T01:45:27,515 Post-processing... 2021-07-15T01:45:27,515 Block: neighbor_data 2021-07-15T01:45:27,516 Block: add_neighbor_features 2021-07-15T01:45:27,516 Block: determinant_func 2021-07-15T01:45:27,516 Block: determinant 2021-07-15T01:45:27,516 Block: distance 2021-07-15T01:45:27,516 Block: distance_info 2021-07-15T01:45:27,516 Block: quicksort 2021-07-15T01:45:27,517 Block: quick_sort 2021-07-15T01:45:27,517 Block: cg_function 2021-07-15T01:45:27,517 Block: calculate_cg 2021-07-15T01:45:27,517 Block: angle 2021-07-15T01:45:27,517 Block: angle_info 2021-07-15T01:45:27,517 Block: c_stats 2021-07-15T01:45:27,517 Block: customize_stats 2021-07-15T01:45:27,518 Block: a_stats 2021-07-15T01:45:27,518 Block: all_stats 2021-07-15T01:45:27,518 Post-processing (stage 2)... 2021-07-15T01:45:27,518 Block: neighbor_data 2021-07-15T01:45:27,518 Block: unknown_interface 2021-07-15T01:45:27,518 Block: add_neighbor_features 2021-07-15T01:45:27,518 Block: determinant_func 2021-07-15T01:45:27,518 Block: determinant 2021-07-15T01:45:27,518 Block: distance 2021-07-15T01:45:27,519 Block: distance_info 2021-07-15T01:45:27,519 Block: quicksort 2021-07-15T01:45:27,519 Block: quick_sort 2021-07-15T01:45:27,519 Block: cg_function 2021-07-15T01:45:27,519 Block: calculate_cg 2021-07-15T01:45:27,519 Block: angle 2021-07-15T01:45:27,519 Block: angle_info 2021-07-15T01:45:27,519 Block: c_stats 2021-07-15T01:45:27,519 Block: customize_stats 2021-07-15T01:45:27,520 Block: a_stats 2021-07-15T01:45:27,520 Block: all_stats 2021-07-15T01:45:27,520 Building modules... 2021-07-15T01:45:27,520 Building module "neighbor_data"... 2021-07-15T01:45:27,520 Constructing wrapper function "add_neighbor_features"... 2021-07-15T01:45:27,520 features_new = add_neighbor_features(pred_last,neigh_voro,probs,features_new,[n_atoms,n_neighs,n_probs,n_features]) 2021-07-15T01:45:27,520 Constructing F90 module support for "determinant_func"... 2021-07-15T01:45:27,520 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T01:45:27,521 deter_value = determinant(matrix) 2021-07-15T01:45:27,521 Constructing F90 module support for "distance"... 2021-07-15T01:45:27,521 Constructing wrapper function "distance.distance_info"... 2021-07-15T01:45:27,521 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:27,521 Constructing F90 module support for "quicksort"... 2021-07-15T01:45:27,521 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T01:45:27,521 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T01:45:27,522 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T01:45:27,522 Constructing F90 module support for "cg_function"... 2021-07-15T01:45:27,522 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T01:45:27,522 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T01:45:27,522 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T01:45:27,522 Constructing F90 module support for "angle"... 2021-07-15T01:45:27,522 Constructing wrapper function "angle.angle_info"... 2021-07-15T01:45:27,522 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:27,522 Constructing F90 module support for "c_stats"... 2021-07-15T01:45:27,523 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T01:45:27,523 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T01:45:27,523 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T01:45:27,523 Constructing F90 module support for "a_stats"... 2021-07-15T01:45:27,523 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T01:45:27,523 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T01:45:27,523 stats = all_stats(list,[len_bn]) 2021-07-15T01:45:27,523 Wrote C/API module "neighbor_data" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c" 2021-07-15T01:45:27,524 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90" 2021-07-15T01:45:27,524 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:27,524 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:27,524 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T01:45:27,524 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T01:45:27,524 f2py options: [] 2021-07-15T01:45:27,524 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c 2021-07-15T01:45:27,629 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:27,630 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:27,631 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T01:45:27,631 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T01:45:27,662 appenddecl: "dimension" not implemented. 2021-07-15T01:45:27,668 appenddecl: "dimension" not implemented. 2021-07-15T01:45:27,671 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:27,672 appenddecl: "dimension" not implemented. 2021-07-15T01:45:27,931 Reading fortran codes... 2021-07-15T01:45:27,932 Reading file 'amlearn/featurize/src/distance_stats.f90' (format:free) 2021-07-15T01:45:27,932 {'before': '', 'this': 'use', 'after': ':: a_stats '} 2021-07-15T01:45:27,932 Line #17 in amlearn/featurize/src/distance_stats.f90:" use :: a_stats " 2021-07-15T01:45:27,932 analyzeline: Could not crack the use statement. 2021-07-15T01:45:27,932 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T01:45:27,932 Post-processing... 2021-07-15T01:45:27,932 Block: distance_stats 2021-07-15T01:45:27,933 Block: cn_dist 2021-07-15T01:45:27,933 Block: cutoff_distance_stats 2021-07-15T01:45:27,933 Block: determinant_func 2021-07-15T01:45:27,933 Block: determinant 2021-07-15T01:45:27,933 Block: distance 2021-07-15T01:45:27,933 Block: distance_info 2021-07-15T01:45:27,934 Block: quicksort 2021-07-15T01:45:27,934 Block: quick_sort 2021-07-15T01:45:27,934 Block: cg_function 2021-07-15T01:45:27,934 Block: calculate_cg 2021-07-15T01:45:27,934 Block: angle 2021-07-15T01:45:27,934 Block: angle_info 2021-07-15T01:45:27,934 Block: c_stats 2021-07-15T01:45:27,934 Block: customize_stats 2021-07-15T01:45:27,935 Block: a_stats 2021-07-15T01:45:27,935 Block: all_stats 2021-07-15T01:45:27,935 Post-processing (stage 2)... 2021-07-15T01:45:27,935 Block: distance_stats 2021-07-15T01:45:27,935 Block: unknown_interface 2021-07-15T01:45:27,935 Block: cn_dist 2021-07-15T01:45:27,935 Block: cutoff_distance_stats 2021-07-15T01:45:27,936 Block: determinant_func 2021-07-15T01:45:27,936 Block: determinant 2021-07-15T01:45:27,936 Block: distance 2021-07-15T01:45:27,936 Block: distance_info 2021-07-15T01:45:27,936 Block: quicksort 2021-07-15T01:45:27,936 Block: quick_sort 2021-07-15T01:45:27,936 Block: cg_function 2021-07-15T01:45:27,936 Block: calculate_cg 2021-07-15T01:45:27,937 Block: angle 2021-07-15T01:45:27,937 Block: angle_info 2021-07-15T01:45:27,937 Block: c_stats 2021-07-15T01:45:27,937 Block: customize_stats 2021-07-15T01:45:27,937 Block: a_stats 2021-07-15T01:45:27,937 Block: all_stats 2021-07-15T01:45:27,937 Building modules... 2021-07-15T01:45:27,937 Building module "distance_stats"... 2021-07-15T01:45:27,937 Constructing wrapper function "cn_dist"... 2021-07-15T01:45:27,938 cn = cn_dist(n_neighbor_list) 2021-07-15T01:45:27,938 Constructing wrapper function "cutoff_distance_stats"... 2021-07-15T01:45:27,938 cutoff_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,n_neighbor_limit]) 2021-07-15T01:45:27,938 Constructing F90 module support for "determinant_func"... 2021-07-15T01:45:27,938 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T01:45:27,938 deter_value = determinant(matrix) 2021-07-15T01:45:27,938 Constructing F90 module support for "distance"... 2021-07-15T01:45:27,938 Constructing wrapper function "distance.distance_info"... 2021-07-15T01:45:27,939 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:27,939 Constructing F90 module support for "quicksort"... 2021-07-15T01:45:27,939 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T01:45:27,939 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T01:45:27,939 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T01:45:27,939 Constructing F90 module support for "cg_function"... 2021-07-15T01:45:27,939 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T01:45:27,939 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T01:45:27,940 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T01:45:27,940 Constructing F90 module support for "angle"... 2021-07-15T01:45:27,940 Constructing wrapper function "angle.angle_info"... 2021-07-15T01:45:27,940 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:27,940 Constructing F90 module support for "c_stats"... 2021-07-15T01:45:27,940 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T01:45:27,940 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T01:45:27,940 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T01:45:27,940 Constructing F90 module support for "a_stats"... 2021-07-15T01:45:27,941 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T01:45:27,941 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T01:45:27,941 stats = all_stats(list,[len_bn]) 2021-07-15T01:45:27,941 Wrote C/API module "distance_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c" 2021-07-15T01:45:27,941 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90" 2021-07-15T01:45:27,941 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:27,941 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:27,941 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T01:45:27,942 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T01:45:27,942 f2py options: [] 2021-07-15T01:45:27,942 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c 2021-07-15T01:45:28,048 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:28,050 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:28,050 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T01:45:28,051 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T01:45:28,085 appenddecl: "dimension" not implemented. 2021-07-15T01:45:28,093 appenddecl: "dimension" not implemented. 2021-07-15T01:45:28,095 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T01:45:28,096 appenddecl: "dimension" not implemented. 2021-07-15T01:45:28,369 Reading fortran codes... 2021-07-15T01:45:28,369 Reading file 'amlearn/featurize/src/distance_nn.f90' (format:free) 2021-07-15T01:45:28,369 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T01:45:28,369 Line #29 in amlearn/featurize/src/distance_nn.f90:" use :: distance " 2021-07-15T01:45:28,369 analyzeline: Could not crack the use statement. 2021-07-15T01:45:28,369 {'before': '', 'this': 'use', 'after': ':: quicksort '} 2021-07-15T01:45:28,370 Line #31 in amlearn/featurize/src/distance_nn.f90:" use :: quicksort " 2021-07-15T01:45:28,370 analyzeline: Could not crack the use statement. 2021-07-15T01:45:28,370 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T01:45:28,370 Post-processing... 2021-07-15T01:45:28,370 Block: distance_nn 2021-07-15T01:45:28,370 Block: distance_neighbor 2021-07-15T01:45:28,370 Block: determinant_func 2021-07-15T01:45:28,370 Block: determinant 2021-07-15T01:45:28,371 Block: distance 2021-07-15T01:45:28,371 Block: distance_info 2021-07-15T01:45:28,371 Block: quicksort 2021-07-15T01:45:28,371 Block: quick_sort 2021-07-15T01:45:28,371 Block: cg_function 2021-07-15T01:45:28,371 Block: calculate_cg 2021-07-15T01:45:28,371 Block: angle 2021-07-15T01:45:28,371 Block: angle_info 2021-07-15T01:45:28,372 Block: c_stats 2021-07-15T01:45:28,372 Block: customize_stats 2021-07-15T01:45:28,372 Block: a_stats 2021-07-15T01:45:28,372 Block: all_stats 2021-07-15T01:45:28,372 Post-processing (stage 2)... 2021-07-15T01:45:28,372 Block: distance_nn 2021-07-15T01:45:28,372 Block: unknown_interface 2021-07-15T01:45:28,372 Block: distance_neighbor 2021-07-15T01:45:28,373 Block: determinant_func 2021-07-15T01:45:28,373 Block: determinant 2021-07-15T01:45:28,373 Block: distance 2021-07-15T01:45:28,373 Block: distance_info 2021-07-15T01:45:28,373 Block: quicksort 2021-07-15T01:45:28,373 Block: quick_sort 2021-07-15T01:45:28,373 Block: cg_function 2021-07-15T01:45:28,373 Block: calculate_cg 2021-07-15T01:45:28,374 Block: angle 2021-07-15T01:45:28,374 Block: angle_info 2021-07-15T01:45:28,374 Block: c_stats 2021-07-15T01:45:28,374 Block: customize_stats 2021-07-15T01:45:28,374 Block: a_stats 2021-07-15T01:45:28,374 Block: all_stats 2021-07-15T01:45:28,375 Building modules... 2021-07-15T01:45:28,375 Building module "distance_nn"... 2021-07-15T01:45:28,375 Constructing wrapper function "distance_neighbor"... 2021-07-15T01:45:28,375 n_neighbor_max,n_neighbor_list,neighbor_lists,neighbor_distance_lists = distance_neighbor(atom_type,atom_coords,distance_cutoff,allow_neighbor_limit,pbc,bds,n_neighbor_max,n_neighbor_list,neighbor_lists,neighbor_distance_lists,[n_atoms,n_neighbor_limit]) 2021-07-15T01:45:28,375 Constructing F90 module support for "determinant_func"... 2021-07-15T01:45:28,376 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T01:45:28,376 deter_value = determinant(matrix) 2021-07-15T01:45:28,376 Constructing F90 module support for "distance"... 2021-07-15T01:45:28,376 Constructing wrapper function "distance.distance_info"... 2021-07-15T01:45:28,376 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:28,376 Constructing F90 module support for "quicksort"... 2021-07-15T01:45:28,377 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T01:45:28,377 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T01:45:28,377 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T01:45:28,377 Constructing F90 module support for "cg_function"... 2021-07-15T01:45:28,377 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T01:45:28,377 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T01:45:28,377 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T01:45:28,378 Constructing F90 module support for "angle"... 2021-07-15T01:45:28,378 Constructing wrapper function "angle.angle_info"... 2021-07-15T01:45:28,378 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T01:45:28,378 Constructing F90 module support for "c_stats"... 2021-07-15T01:45:28,378 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T01:45:28,378 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T01:45:28,379 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T01:45:28,379 Constructing F90 module support for "a_stats"... 2021-07-15T01:45:28,379 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T01:45:28,379 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T01:45:28,379 stats = all_stats(list,[len_bn]) 2021-07-15T01:45:28,379 Wrote C/API module "distance_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c" 2021-07-15T01:45:28,380 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90" 2021-07-15T01:45:28,380 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:28,380 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:28,380 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T01:45:28,380 build_src: building npy-pkg config files 2021-07-15T01:45:28,380 creating /tmp/pip-pip-egg-info-yq9js6w7/amlearn.egg-info 2021-07-15T01:45:28,381 writing /tmp/pip-pip-egg-info-yq9js6w7/amlearn.egg-info/PKG-INFO 2021-07-15T01:45:28,381 writing dependency_links to /tmp/pip-pip-egg-info-yq9js6w7/amlearn.egg-info/dependency_links.txt 2021-07-15T01:45:28,381 writing requirements to /tmp/pip-pip-egg-info-yq9js6w7/amlearn.egg-info/requires.txt 2021-07-15T01:45:28,381 writing top-level names to /tmp/pip-pip-egg-info-yq9js6w7/amlearn.egg-info/top_level.txt 2021-07-15T01:45:28,381 writing manifest file '/tmp/pip-pip-egg-info-yq9js6w7/amlearn.egg-info/SOURCES.txt' 2021-07-15T01:45:28,447 reading manifest file '/tmp/pip-pip-egg-info-yq9js6w7/amlearn.egg-info/SOURCES.txt' 2021-07-15T01:45:28,455 writing manifest file '/tmp/pip-pip-egg-info-yq9js6w7/amlearn.egg-info/SOURCES.txt' 2021-07-15T01:45:28,598 Source in /tmp/pip-wheel-727cm3pa/amlearn_d34e5a687b1d4345957fbcf4b4ff5086 has version 0.2.3, which satisfies requirement amlearn==0.2.3 from https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 2021-07-15T01:45:28,599 Removed amlearn==0.2.3 from https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 from build tracker '/tmp/pip-req-tracker-j1rjppus' 2021-07-15T01:45:28,603 Created temporary directory: /tmp/pip-unpack-f7c1w0y7 2021-07-15T01:45:28,603 Building wheels for collected packages: amlearn 2021-07-15T01:45:28,607 Created temporary directory: /tmp/pip-wheel-lfapx2ol 2021-07-15T01:45:28,607 Building wheel for amlearn (setup.py): started 2021-07-15T01:45:28,608 Destination directory: /tmp/pip-wheel-lfapx2ol 2021-07-15T01:45:28,608 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-727cm3pa/amlearn_d34e5a687b1d4345957fbcf4b4ff5086/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-727cm3pa/amlearn_d34e5a687b1d4345957fbcf4b4ff5086/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lfapx2ol 2021-07-15T01:45:30,224 running bdist_wheel 2021-07-15T01:45:30,226 running build 2021-07-15T01:45:30,226 running config_cc 2021-07-15T01:45:30,226 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-07-15T01:45:30,227 running config_fc 2021-07-15T01:45:30,227 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-07-15T01:45:30,227 running build_src 2021-07-15T01:45:30,227 build_src 2021-07-15T01:45:30,228 building extension "amlearn.featurize.src.utils" sources 2021-07-15T01:45:30,228 f2py options: [] 2021-07-15T01:45:30,228 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:30,228 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:30,320 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T01:45:30,320 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T01:45:30,321 f2py options: [] 2021-07-15T01:45:30,321 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:30,321 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:30,321 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T01:45:30,321 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T01:45:30,321 f2py options: [] 2021-07-15T01:45:30,321 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:30,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:30,322 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T01:45:30,322 building extension "amlearn.featurize.src.boop" sources 2021-07-15T01:45:30,322 f2py options: [] 2021-07-15T01:45:30,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:30,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:30,323 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T01:45:30,323 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T01:45:30,323 f2py options: [] 2021-07-15T01:45:30,323 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:30,323 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:30,324 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T01:45:30,324 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T01:45:30,324 f2py options: [] 2021-07-15T01:45:30,324 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:30,324 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:30,324 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T01:45:30,324 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T01:45:30,325 f2py options: [] 2021-07-15T01:45:30,325 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:30,325 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:30,325 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T01:45:30,325 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T01:45:30,325 f2py options: [] 2021-07-15T01:45:30,325 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T01:45:30,326 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T01:45:30,326 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T01:45:30,326 build_src: building npy-pkg config files 2021-07-15T01:45:30,327 running build_py 2021-07-15T01:45:30,330 creating build/lib.linux-armv7l-3.9 2021-07-15T01:45:30,331 creating build/lib.linux-armv7l-3.9/scripts 2021-07-15T01:45:30,332 copying scripts/fractal_analysis.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T01:45:30,334 copying scripts/__init__.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T01:45:30,335 copying scripts/pdp_plot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T01:45:30,337 copying scripts/featurize_bp_symmfunc.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T01:45:30,339 copying scripts/distribution.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T01:45:30,340 copying scripts/featurize_interstice.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T01:45:30,342 copying scripts/feature_violinplot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T01:45:30,344 copying scripts/generalization.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T01:45:30,347 creating build/lib.linux-armv7l-3.9/amlearn 2021-07-15T01:45:30,348 copying amlearn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T01:45:30,349 copying amlearn/_version.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T01:45:30,352 creating build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:30,352 copying amlearn/featurize/nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:30,355 copying amlearn/featurize/medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:30,357 copying amlearn/featurize/symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:30,359 copying amlearn/featurize/short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:30,363 copying amlearn/featurize/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:30,364 copying amlearn/featurize/pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:30,366 copying amlearn/featurize/base.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:30,369 creating build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T01:45:30,370 copying amlearn/learn/preprocessor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T01:45:30,372 copying amlearn/learn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T01:45:30,374 copying amlearn/learn/classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T01:45:30,376 copying amlearn/learn/regressor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T01:45:30,379 copying amlearn/learn/base.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T01:45:30,382 creating build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,383 copying amlearn/utils/data.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,385 copying amlearn/utils/verbose.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,387 copying amlearn/utils/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,388 copying amlearn/utils/packing.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,390 copying amlearn/utils/basetest.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,392 copying amlearn/utils/backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,394 copying amlearn/utils/check.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,396 copying amlearn/utils/directory.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,398 copying amlearn/utils/logging.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,400 creating build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T01:45:30,401 copying amlearn/featurize/src/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T01:45:30,404 creating build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T01:45:30,404 copying amlearn/featurize/tests/test_short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T01:45:30,407 copying amlearn/featurize/tests/test_medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T01:45:30,409 copying amlearn/featurize/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T01:45:30,410 copying amlearn/featurize/tests/test_featurizer_pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T01:45:30,412 copying amlearn/featurize/tests/test_nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T01:45:30,415 creating build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T01:45:30,416 copying amlearn/learn/sklearn_patch/_split.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T01:45:30,420 copying amlearn/learn/sklearn_patch/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T01:45:30,421 copying amlearn/learn/sklearn_patch/_validation.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T01:45:30,425 creating build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T01:45:30,426 copying amlearn/learn/tests/test_classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T01:45:30,428 copying amlearn/learn/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T01:45:30,430 creating build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T01:45:30,431 copying amlearn/utils/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T01:45:30,432 copying amlearn/utils/tests/test_backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T01:45:30,434 copying amlearn/utils/tests/test_data.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T01:45:30,436 copying amlearn/utils/amlearn_logging.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,437 copying amlearn/utils/default_environment.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,439 copying amlearn/utils/PTE.json -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T01:45:30,448 running build_ext 2021-07-15T01:45:30,454 customize UnixCCompiler 2021-07-15T01:45:30,456 customize UnixCCompiler using build_ext 2021-07-15T01:45:30,571 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2021-07-15T01:45:30,572 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:30,573 creating /tmp/tmp8zfs5tou/home 2021-07-15T01:45:30,573 creating /tmp/tmp8zfs5tou/home/piwheels 2021-07-15T01:45:30,574 creating /tmp/tmp8zfs5tou/home/piwheels/.local 2021-07-15T01:45:30,574 creating /tmp/tmp8zfs5tou/home/piwheels/.local/lib 2021-07-15T01:45:30,575 creating /tmp/tmp8zfs5tou/home/piwheels/.local/lib/python3.9 2021-07-15T01:45:30,576 creating /tmp/tmp8zfs5tou/home/piwheels/.local/lib/python3.9/site-packages 2021-07-15T01:45:30,576 creating /tmp/tmp8zfs5tou/home/piwheels/.local/lib/python3.9/site-packages/numpy 2021-07-15T01:45:30,577 creating /tmp/tmp8zfs5tou/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils 2021-07-15T01:45:30,577 creating /tmp/tmp8zfs5tou/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks 2021-07-15T01:45:30,578 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:30,578 extra options: '-march=native' 2021-07-15T01:45:30,669 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2021-07-15T01:45:30,670 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:30,670 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:30,670 extra options: '-O3' 2021-07-15T01:45:30,762 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2021-07-15T01:45:30,763 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:30,763 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:30,763 extra options: '-Werror' 2021-07-15T01:45:30,861 CCompilerOpt.__init__[1696] : check requested baseline 2021-07-15T01:45:30,868 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2021-07-15T01:45:30,877 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2021-07-15T01:45:30,877 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:30,877 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:30,877 extra options: '-mfpu=neon' 2021-07-15T01:45:30,969 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T01:45:30,970 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:30,970 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:30,970 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2021-07-15T01:45:31,063 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2021-07-15T01:45:31,063 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:31,064 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:31,064 extra options: '-mfpu=neon-vfpv4' 2021-07-15T01:45:31,157 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2021-07-15T01:45:31,157 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:31,158 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:31,158 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2021-07-15T01:45:31,560 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T01:45:31,560 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:31,561 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:31,561 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2021-07-15T01:45:31,971 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2021-07-15T01:45:31,972 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:31,972 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:31,972 extra options: '-mfpu=neon -Werror' 2021-07-15T01:45:32,354 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T01:45:32,355 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:32,355 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:32,355 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2021-07-15T01:45:32,448 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T01:45:32,448 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:32,449 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:32,449 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2021-07-15T01:45:32,894 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2021-07-15T01:45:32,894 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:32,894 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:32,895 extra options: '-march=armv8.2-a+fp16' 2021-07-15T01:45:32,985 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2021-07-15T01:45:32,986 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:32,986 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:32,986 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2021-07-15T01:45:33,451 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2021-07-15T01:45:33,452 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:33,452 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:33,453 extra options: '-march=armv8.2-a+fp16fml' 2021-07-15T01:45:33,547 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2021-07-15T01:45:33,547 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:33,548 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:33,548 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2021-07-15T01:45:33,981 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmp8zfs5tou/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmp8zfs5tou/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2021-07-15T01:45:33,982 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2021-07-15T01:45:33,982 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2021-07-15T01:45:33,982 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T01:45:33,982 | ^~~~~~~~~~~~~~ 2021-07-15T01:45:33,982 | vfmlal_low_f16 2021-07-15T01:45:33,982 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2021-07-15T01:45:33,983 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T01:45:33,983 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T01:45:33,983 | | 2021-07-15T01:45:33,983 | int 2021-07-15T01:45:33,983 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T01:45:33,984 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2021-07-15T01:45:33,984 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2021-07-15T01:45:33,984 | ~~~~~~~~~~~~^~~ 2021-07-15T01:45:33,984 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2021-07-15T01:45:33,984 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T01:45:33,984 | ^~~~~~~~~~~~~~~~ 2021-07-15T01:45:33,984 | vfmlslq_high_f16 2021-07-15T01:45:33,985 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2021-07-15T01:45:33,985 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T01:45:33,985 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T01:45:33,985 | | 2021-07-15T01:45:33,985 | int 2021-07-15T01:45:33,985 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T01:45:33,985 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2021-07-15T01:45:33,986 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2021-07-15T01:45:33,986 | ~~~~~~~~~~~~^~~ 2021-07-15T01:45:33,986 cc1: all warnings being treated as errors 2021-07-15T01:45:33,988 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T01:45:33,996 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2021-07-15T01:45:33,996 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:33,997 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:33,997 extra options: '-march=armv8.2-a+dotprod' 2021-07-15T01:45:34,085 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2021-07-15T01:45:34,085 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:34,086 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T01:45:34,086 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2021-07-15T01:45:34,527 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmp8zfs5tou/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmp8zfs5tou/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2021-07-15T01:45:34,527 /tmp/ccTMl2KT.s: Assembler messages: 2021-07-15T01:45:34,528 /tmp/ccTMl2KT.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2021-07-15T01:45:34,533 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T01:45:34,539 CCompilerOpt.__init__[1721] : initialize targets groups 2021-07-15T01:45:34,545 CCompilerOpt.__init__[1723] : parse target group simd_test 2021-07-15T01:45:34,551 CCompilerOpt._parse_target_tokens[1934] : skip targets (SSE2 VSX3 AVX512_SKX AVX512F XOP SSE42 VSX2 (AVX2 FMA3) VSX FMA4) not part of baseline or dispatch-able features 2021-07-15T01:45:34,557 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2021-07-15T01:45:34,562 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2021-07-15T01:45:34,615 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2021-07-15T01:45:34,616 customize Gnu95FCompiler 2021-07-15T01:45:34,616 Found executable /usr/bin/gfortran 2021-07-15T01:45:34,674 customize Gnu95FCompiler 2021-07-15T01:45:34,735 customize Gnu95FCompiler using build_ext 2021-07-15T01:45:34,735 building 'amlearn.featurize.src.utils' extension 2021-07-15T01:45:34,738 compiling C sources 2021-07-15T01:45:34,739 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T01:45:34,740 creating build/temp.linux-armv7l-3.9/build 2021-07-15T01:45:34,740 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T01:45:34,741 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T01:45:34,742 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:34,743 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T01:45:34,744 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build 2021-07-15T01:45:34,745 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T01:45:34,745 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T01:45:34,746 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:34,747 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T01:45:34,748 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T01:45:34,797 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.carm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c 2021-07-15T01:45:35,203 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T01:45:35,203 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T01:45:35,203 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T01:45:35,203 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T01:45:35,204 from build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:16: 2021-07-15T01:45:35,204 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T01:45:35,204 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T01:45:35,204 | ^~~~~~~ 2021-07-15T01:45:35,207 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T01:45:35,207 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T01:45:35,208 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T01:45:35,208 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T01:45:35,208 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c:2: 2021-07-15T01:45:35,208 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T01:45:35,208 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T01:45:35,208 | ^~~~~~~ 2021-07-15T01:45:35,276 build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:109:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-07-15T01:45:35,276 109 | static int f2py_size(PyArrayObject* var, ...) 2021-07-15T01:45:35,276 | ^~~~~~~~~ 2021-07-15T01:45:36,428 compiling Fortran 90 module sources 2021-07-15T01:45:36,429 creating build/temp.linux-armv7l-3.9/amlearn 2021-07-15T01:45:36,430 creating build/temp.linux-armv7l-3.9/amlearn/featurize 2021-07-15T01:45:36,430 creating build/temp.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T01:45:36,431 Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T01:45:36,432 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T01:45:36,432 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T01:45:36,432 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T01:45:36,432 extra options: '-Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src' 2021-07-15T01:45:36,433 gfortran:f90: amlearn/featurize/src/utils.f90 2021-07-15T01:45:36,514 amlearn/featurize/src/utils.f90:259:16: 2021-07-15T01:45:36,514 259 | REAL(16) :: std 2021-07-15T01:45:36,514 | 1 2021-07-15T01:45:36,514 Error: Kind 16 not supported for type REAL at (1) 2021-07-15T01:45:36,515 amlearn/featurize/src/utils.f90:285:18: 2021-07-15T01:45:36,515 285 | std = std + (list(atom) - mean)**2 2021-07-15T01:45:36,515 | 1 2021-07-15T01:45:36,516 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] 2021-07-15T01:45:36,521 error: Command "/usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops -Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c -c amlearn/featurize/src/utils.f90 -o build/temp.linux-armv7l-3.9/amlearn/featurize/src/utils.o -Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src" failed with exit status 1 2021-07-15T01:45:36,522 ########### EXT COMPILER OPTIMIZATION ########### 2021-07-15T01:45:36,522 Platform : 2021-07-15T01:45:36,522 Architecture: armhf 2021-07-15T01:45:36,523 Compiler : gcc 2021-07-15T01:45:36,523 CPU baseline : 2021-07-15T01:45:36,523 Requested : 'min' 2021-07-15T01:45:36,523 Enabled : none 2021-07-15T01:45:36,523 Flags : none 2021-07-15T01:45:36,523 Extra checks: none 2021-07-15T01:45:36,524 CPU dispatch : 2021-07-15T01:45:36,524 Requested : 'max -xop -fma4' 2021-07-15T01:45:36,524 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2021-07-15T01:45:36,524 Generated : none 2021-07-15T01:45:36,524 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-wheel-727cm3pa/amlearn_d34e5a687b1d4345957fbcf4b4ff5086/build/temp.linux-armv7l-3.9/ccompiler_opt_cache_ext.py 2021-07-15T01:45:36,690 Building wheel for amlearn (setup.py): finished with status 'error' 2021-07-15T01:45:36,691 ERROR: Failed building wheel for amlearn 2021-07-15T01:45:36,691 Running setup.py clean for amlearn 2021-07-15T01:45:36,692 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-727cm3pa/amlearn_d34e5a687b1d4345957fbcf4b4ff5086/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-727cm3pa/amlearn_d34e5a687b1d4345957fbcf4b4ff5086/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T01:45:38,337 running clean 2021-07-15T01:45:38,337 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T01:45:38,353 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-15T01:45:38,378 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T01:45:38,378 'build/scripts.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T01:45:38,511 Failed to build amlearn 2021-07-15T01:45:38,512 ERROR: Failed to build one or more wheels 2021-07-15T01:45:38,513 Exception information: 2021-07-15T01:45:38,513 Traceback (most recent call last): 2021-07-15T01:45:38,513 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T01:45:38,513 status = self.run(options, args) 2021-07-15T01:45:38,513 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T01:45:38,513 return func(self, options, args) 2021-07-15T01:45:38,513 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T01:45:38,513 raise CommandError( 2021-07-15T01:45:38,513 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T01:45:38,515 Removed build tracker: '/tmp/pip-req-tracker-j1rjppus'