2021-07-15T05:13:55,533 Created temporary directory: /tmp/pip-ephem-wheel-cache-48chx7qf 2021-07-15T05:13:55,536 Created temporary directory: /tmp/pip-req-tracker-n6llfmnj 2021-07-15T05:13:55,536 Initialized build tracking at /tmp/pip-req-tracker-n6llfmnj 2021-07-15T05:13:55,536 Created build tracker: /tmp/pip-req-tracker-n6llfmnj 2021-07-15T05:13:55,536 Entered build tracker: /tmp/pip-req-tracker-n6llfmnj 2021-07-15T05:13:55,537 Created temporary directory: /tmp/pip-wheel-rbr2s4f1 2021-07-15T05:13:55,565 1 location(s) to search for versions of amlearn: 2021-07-15T05:13:55,565 * https://pypi.org/simple/amlearn/ 2021-07-15T05:13:55,566 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2021-07-15T05:13:55,566 Getting page https://pypi.org/simple/amlearn/ 2021-07-15T05:13:55,568 Found index url https://pypi.org/simple 2021-07-15T05:13:55,753 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz#sha256=3feb0259f07d515171eb3f5dbcd60a40a90a2c04b9114be537d617d1df4addee (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2021-07-15T05:13:55,754 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz#sha256=20a099bc7da2324c247c1f5bd4c61cbf207ad59248a0c161fac0a08d11112f36 (from https://pypi.org/simple/amlearn/), version: 0.1.0 2021-07-15T05:13:55,754 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz#sha256=02a6393944cbf8a784db0d554708f37a035c9203518531e46e870bc1453cef7f (from https://pypi.org/simple/amlearn/), version: 0.2.0 2021-07-15T05:13:55,755 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz#sha256=036b1f5f9152145124dc681a3345d518f374c1a8785f602addf4bc27494917f3 (from https://pypi.org/simple/amlearn/), version: 0.2.1 2021-07-15T05:13:55,755 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz#sha256=1ad6512e2146f4e145e097463f4575427820335c59fca3e6bfb41806c786799d (from https://pypi.org/simple/amlearn/), version: 0.2.2 2021-07-15T05:13:55,755 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 (from https://pypi.org/simple/amlearn/), version: 0.2.3 2021-07-15T05:13:55,756 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 (from https://pypi.org/simple/amlearn/), version: 0.2.4 2021-07-15T05:13:55,756 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c (from https://pypi.org/simple/amlearn/), version: 0.2.5 2021-07-15T05:13:55,756 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba (from https://pypi.org/simple/amlearn/), version: 0.2.6 2021-07-15T05:13:55,756 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 (from https://pypi.org/simple/amlearn/), version: 0.3.1 2021-07-15T05:13:55,757 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e (from https://pypi.org/simple/amlearn/), version: 0.3.2 2021-07-15T05:13:55,757 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d (from https://pypi.org/simple/amlearn/), version: 0.3.3 2021-07-15T05:13:55,757 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 (from https://pypi.org/simple/amlearn/), version: 0.3.4 2021-07-15T05:13:55,757 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2021-07-15T05:13:55,777 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2021-07-15T05:13:55,799 Collecting amlearn==0.2.4 2021-07-15T05:13:55,800 Created temporary directory: /tmp/pip-unpack-5qu4acy0 2021-07-15T05:13:55,840 Downloading amlearn-0.2.4.tar.gz (83 kB) 2021-07-15T05:13:56,021 Added amlearn==0.2.4 from https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 to build tracker '/tmp/pip-req-tracker-n6llfmnj' 2021-07-15T05:13:56,023 Running setup.py (path:/tmp/pip-wheel-rbr2s4f1/amlearn_520fd246dcce4f43ab714b28a6d1076f/setup.py) egg_info for package amlearn 2021-07-15T05:13:56,025 Created temporary directory: /tmp/pip-pip-egg-info-ijq7l6je 2021-07-15T05:13:56,025 Running command python setup.py egg_info 2021-07-15T05:13:57,847 running egg_info 2021-07-15T05:13:57,848 running build_src 2021-07-15T05:13:57,851 build_src 2021-07-15T05:13:57,851 building extension "amlearn.featurize.src.utils" sources 2021-07-15T05:13:57,851 f2py options: [] 2021-07-15T05:13:57,851 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T05:13:57,851 creating build 2021-07-15T05:13:57,852 creating build/src.linux-armv7l-3.9 2021-07-15T05:13:57,853 creating build/src.linux-armv7l-3.9/amlearn 2021-07-15T05:13:57,853 creating build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:13:57,854 creating build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T05:13:58,083 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:13:58,084 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:13:58,085 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T05:13:58,085 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T05:13:58,124 appenddecl: "dimension" not implemented. 2021-07-15T05:13:58,136 appenddecl: "dimension" not implemented. 2021-07-15T05:13:58,140 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:13:58,141 appenddecl: "dimension" not implemented. 2021-07-15T05:13:58,354 Reading fortran codes... 2021-07-15T05:13:58,354 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T05:13:58,354 Post-processing... 2021-07-15T05:13:58,354 Block: utils 2021-07-15T05:13:58,354 Block: determinant_func 2021-07-15T05:13:58,355 Block: determinant 2021-07-15T05:13:58,355 Block: distance 2021-07-15T05:13:58,355 Block: distance_info 2021-07-15T05:13:58,355 Block: quicksort 2021-07-15T05:13:58,355 Block: quick_sort 2021-07-15T05:13:58,355 Block: cg_function 2021-07-15T05:13:58,356 Block: calculate_cg 2021-07-15T05:13:58,356 Block: angle 2021-07-15T05:13:58,356 Block: angle_info 2021-07-15T05:13:58,356 Block: c_stats 2021-07-15T05:13:58,356 Block: customize_stats 2021-07-15T05:13:58,356 Block: a_stats 2021-07-15T05:13:58,356 Block: all_stats 2021-07-15T05:13:58,357 Post-processing (stage 2)... 2021-07-15T05:13:58,357 Block: utils 2021-07-15T05:13:58,357 Block: unknown_interface 2021-07-15T05:13:58,357 Block: determinant_func 2021-07-15T05:13:58,357 Block: determinant 2021-07-15T05:13:58,358 Block: distance 2021-07-15T05:13:58,358 Block: distance_info 2021-07-15T05:13:58,358 Block: quicksort 2021-07-15T05:13:58,358 Block: quick_sort 2021-07-15T05:13:58,358 Block: cg_function 2021-07-15T05:13:58,358 Block: calculate_cg 2021-07-15T05:13:58,359 Block: angle 2021-07-15T05:13:58,359 Block: angle_info 2021-07-15T05:13:58,359 Block: c_stats 2021-07-15T05:13:58,359 Block: customize_stats 2021-07-15T05:13:58,360 Block: a_stats 2021-07-15T05:13:58,360 Block: all_stats 2021-07-15T05:13:58,360 Building modules... 2021-07-15T05:13:58,360 Building module "utils"... 2021-07-15T05:13:58,360 Constructing F90 module support for "determinant_func"... 2021-07-15T05:13:58,360 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T05:13:58,360 deter_value = determinant(matrix) 2021-07-15T05:13:58,360 Constructing F90 module support for "distance"... 2021-07-15T05:13:58,360 Constructing wrapper function "distance.distance_info"... 2021-07-15T05:13:58,360 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:13:58,361 Constructing F90 module support for "quicksort"... 2021-07-15T05:13:58,361 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T05:13:58,361 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T05:13:58,361 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T05:13:58,361 Constructing F90 module support for "cg_function"... 2021-07-15T05:13:58,361 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T05:13:58,361 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T05:13:58,361 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T05:13:58,361 Constructing F90 module support for "angle"... 2021-07-15T05:13:58,362 Constructing wrapper function "angle.angle_info"... 2021-07-15T05:13:58,362 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:13:58,362 Constructing F90 module support for "c_stats"... 2021-07-15T05:13:58,362 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T05:13:58,362 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T05:13:58,362 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T05:13:58,362 Constructing F90 module support for "a_stats"... 2021-07-15T05:13:58,362 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T05:13:58,363 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T05:13:58,363 stats = all_stats(list,[len_bn]) 2021-07-15T05:13:58,363 Wrote C/API module "utils" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c" 2021-07-15T05:13:58,363 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90" 2021-07-15T05:13:58,363 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:13:58,363 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:13:58,363 creating build/src.linux-armv7l-3.9/build 2021-07-15T05:13:58,363 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T05:13:58,363 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T05:13:58,364 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:13:58,364 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T05:13:58,364 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T05:13:58,377 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T05:13:58,396 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T05:13:58,396 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T05:13:58,397 f2py options: [] 2021-07-15T05:13:58,397 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c 2021-07-15T05:13:58,602 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:13:58,604 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:13:58,604 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T05:13:58,604 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T05:13:58,655 appenddecl: "dimension" not implemented. 2021-07-15T05:13:58,661 appenddecl: "dimension" not implemented. 2021-07-15T05:13:58,664 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:13:58,665 appenddecl: "dimension" not implemented. 2021-07-15T05:13:58,967 Reading fortran codes... 2021-07-15T05:13:58,967 Reading file 'amlearn/featurize/src/voronoi_nn.f90' (format:free) 2021-07-15T05:13:58,967 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T05:13:58,967 Line #39 in amlearn/featurize/src/voronoi_nn.f90:" use :: distance " 2021-07-15T05:13:58,968 analyzeline: Could not crack the use statement. 2021-07-15T05:13:58,968 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T05:13:58,968 Post-processing... 2021-07-15T05:13:58,968 Block: voronoi_nn 2021-07-15T05:13:58,968 Block: determinant 2021-07-15T05:13:58,968 Block: voronoi 2021-07-15T05:13:58,969 Block: determinant_func 2021-07-15T05:13:58,969 Block: determinant 2021-07-15T05:13:58,969 Block: distance 2021-07-15T05:13:58,969 Block: distance_info 2021-07-15T05:13:58,969 Block: quicksort 2021-07-15T05:13:58,969 Block: quick_sort 2021-07-15T05:13:58,969 Block: cg_function 2021-07-15T05:13:58,969 Block: calculate_cg 2021-07-15T05:13:58,970 Block: angle 2021-07-15T05:13:58,970 Block: angle_info 2021-07-15T05:13:58,970 Block: c_stats 2021-07-15T05:13:58,970 Block: customize_stats 2021-07-15T05:13:58,970 Block: a_stats 2021-07-15T05:13:58,970 Block: all_stats 2021-07-15T05:13:58,970 Post-processing (stage 2)... 2021-07-15T05:13:58,970 Block: voronoi_nn 2021-07-15T05:13:58,970 Block: unknown_interface 2021-07-15T05:13:58,971 Block: determinant 2021-07-15T05:13:58,971 Block: voronoi 2021-07-15T05:13:58,971 Block: determinant_func 2021-07-15T05:13:58,971 Block: determinant 2021-07-15T05:13:58,971 Block: distance 2021-07-15T05:13:58,971 Block: distance_info 2021-07-15T05:13:58,971 Block: quicksort 2021-07-15T05:13:58,971 Block: quick_sort 2021-07-15T05:13:58,971 Block: cg_function 2021-07-15T05:13:58,971 Block: calculate_cg 2021-07-15T05:13:58,972 Block: angle 2021-07-15T05:13:58,972 Block: angle_info 2021-07-15T05:13:58,972 Block: c_stats 2021-07-15T05:13:58,972 Block: customize_stats 2021-07-15T05:13:58,972 Block: a_stats 2021-07-15T05:13:58,972 Block: all_stats 2021-07-15T05:13:58,972 Building modules... 2021-07-15T05:13:58,973 Building module "voronoi_nn"... 2021-07-15T05:13:58,973 Constructing wrapper function "determinant"... 2021-07-15T05:13:58,973 deter_value = determinant(face) 2021-07-15T05:13:58,973 Constructing wrapper function "voronoi"... 2021-07-15T05:13:58,973 n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists = voronoi(atom_type,atom_coords,cutoff,allow_neighbor_limit,small_face_thres,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T05:13:58,973 Constructing F90 module support for "determinant_func"... 2021-07-15T05:13:58,973 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T05:13:58,974 deter_value = determinant(matrix) 2021-07-15T05:13:58,974 Constructing F90 module support for "distance"... 2021-07-15T05:13:58,974 Constructing wrapper function "distance.distance_info"... 2021-07-15T05:13:58,974 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:13:58,974 Constructing F90 module support for "quicksort"... 2021-07-15T05:13:58,974 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T05:13:58,974 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T05:13:58,974 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T05:13:58,974 Constructing F90 module support for "cg_function"... 2021-07-15T05:13:58,975 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T05:13:58,975 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T05:13:58,975 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T05:13:58,975 Constructing F90 module support for "angle"... 2021-07-15T05:13:58,975 Constructing wrapper function "angle.angle_info"... 2021-07-15T05:13:58,975 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:13:58,975 Constructing F90 module support for "c_stats"... 2021-07-15T05:13:58,975 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T05:13:58,975 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T05:13:58,975 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T05:13:58,976 Constructing F90 module support for "a_stats"... 2021-07-15T05:13:58,976 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T05:13:58,976 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T05:13:58,976 stats = all_stats(list,[len_bn]) 2021-07-15T05:13:58,976 Wrote C/API module "voronoi_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c" 2021-07-15T05:13:58,976 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90" 2021-07-15T05:13:58,976 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:13:58,976 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:13:58,976 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T05:13:58,977 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T05:13:58,977 f2py options: [] 2021-07-15T05:13:58,977 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c 2021-07-15T05:13:59,188 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:13:59,189 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:13:59,190 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T05:13:59,190 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T05:13:59,232 sortvarnames: failed to compute dependencies because of cyclic dependencies between target_voro_idx, voronoi_index_list, motif_one_hot, n_voro, n_target, n_atoms 2021-07-15T05:13:59,293 appenddecl: "dimension" not implemented. 2021-07-15T05:13:59,304 appenddecl: "dimension" not implemented. 2021-07-15T05:13:59,308 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:13:59,309 appenddecl: "dimension" not implemented. 2021-07-15T05:13:59,945 Reading fortran codes... 2021-07-15T05:13:59,945 Reading file 'amlearn/featurize/src/voronoi_stats.f90' (format:free) 2021-07-15T05:13:59,945 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T05:13:59,945 Line #205 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T05:13:59,945 analyzeline: Could not crack the use statement. 2021-07-15T05:13:59,946 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T05:13:59,946 Line #230 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T05:13:59,946 analyzeline: Could not crack the use statement. 2021-07-15T05:13:59,946 {'before': '', 'this': 'use', 'after': ':: a_stats, only : all_stats '} 2021-07-15T05:13:59,946 Line #318 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only : all_stats " 2021-07-15T05:13:59,947 analyzeline: Could not crack the use statement. 2021-07-15T05:13:59,947 {'before': '', 'this': 'use', 'after': ':: c_stats, only : customize_stats '} 2021-07-15T05:13:59,947 Line #320 in amlearn/featurize/src/voronoi_stats.f90:" use :: c_stats, only : customize_stats " 2021-07-15T05:13:59,947 analyzeline: Could not crack the use statement. 2021-07-15T05:13:59,947 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T05:13:59,947 Post-processing... 2021-07-15T05:13:59,947 Block: voronoi_stats 2021-07-15T05:13:59,948 Block: voronoi_index 2021-07-15T05:13:59,948 Block: i_fold_symmetry 2021-07-15T05:13:59,948 Block: line_percent 2021-07-15T05:13:59,948 {} 2021-07-15T05:13:59,948 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T05:13:59,948 vars2fortran: No typespec for argument "n_voro". 2021-07-15T05:13:59,948 {} 2021-07-15T05:13:59,948 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T05:13:59,948 vars2fortran: No typespec for argument "n_target". 2021-07-15T05:13:59,949 Block: character_motif 2021-07-15T05:13:59,949 Block: area_wt_i_fold_symmetry 2021-07-15T05:13:59,949 Block: vol_wt_i_fold_symmetry 2021-07-15T05:13:59,949 Block: voronoi_area_stats 2021-07-15T05:13:59,949 Block: voronoi_area_stats_separate 2021-07-15T05:13:59,949 Block: voronoi_vol_stats 2021-07-15T05:13:59,949 Block: voronoi_vol_stats_separate 2021-07-15T05:13:59,949 Block: voronoi_distance_stats 2021-07-15T05:13:59,950 Block: determinant_func 2021-07-15T05:13:59,950 Block: determinant 2021-07-15T05:13:59,950 Block: distance 2021-07-15T05:13:59,950 Block: distance_info 2021-07-15T05:13:59,950 Block: quicksort 2021-07-15T05:13:59,950 Block: quick_sort 2021-07-15T05:13:59,950 Block: cg_function 2021-07-15T05:13:59,951 Block: calculate_cg 2021-07-15T05:13:59,951 Block: angle 2021-07-15T05:13:59,951 Block: angle_info 2021-07-15T05:13:59,951 Block: c_stats 2021-07-15T05:13:59,951 Block: customize_stats 2021-07-15T05:13:59,951 Block: a_stats 2021-07-15T05:13:59,951 Block: all_stats 2021-07-15T05:13:59,951 Post-processing (stage 2)... 2021-07-15T05:13:59,952 Block: voronoi_stats 2021-07-15T05:13:59,952 Block: unknown_interface 2021-07-15T05:13:59,952 Block: voronoi_index 2021-07-15T05:13:59,952 Block: i_fold_symmetry 2021-07-15T05:13:59,952 Block: line_percent 2021-07-15T05:13:59,952 Block: character_motif 2021-07-15T05:13:59,952 Block: area_wt_i_fold_symmetry 2021-07-15T05:13:59,952 Block: vol_wt_i_fold_symmetry 2021-07-15T05:13:59,953 Block: voronoi_area_stats 2021-07-15T05:13:59,953 Block: voronoi_area_stats_separate 2021-07-15T05:13:59,953 Block: voronoi_vol_stats 2021-07-15T05:13:59,953 Block: voronoi_vol_stats_separate 2021-07-15T05:13:59,953 Block: voronoi_distance_stats 2021-07-15T05:13:59,953 Block: determinant_func 2021-07-15T05:13:59,953 Block: determinant 2021-07-15T05:13:59,953 Block: distance 2021-07-15T05:13:59,953 Block: distance_info 2021-07-15T05:13:59,954 Block: quicksort 2021-07-15T05:13:59,954 Block: quick_sort 2021-07-15T05:13:59,954 Block: cg_function 2021-07-15T05:13:59,954 Block: calculate_cg 2021-07-15T05:13:59,954 Block: angle 2021-07-15T05:13:59,954 Block: angle_info 2021-07-15T05:13:59,954 Block: c_stats 2021-07-15T05:13:59,954 Block: customize_stats 2021-07-15T05:13:59,955 Block: a_stats 2021-07-15T05:13:59,955 Block: all_stats 2021-07-15T05:13:59,955 Building modules... 2021-07-15T05:13:59,955 Building module "voronoi_stats"... 2021-07-15T05:13:59,955 Constructing wrapper function "voronoi_index"... 2021-07-15T05:13:59,955 voronoi_index_list = voronoi_index(voronoi_index_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T05:13:59,955 Constructing wrapper function "i_fold_symmetry"... 2021-07-15T05:13:59,955 i_symm_list = i_fold_symmetry(i_symm_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T05:13:59,956 Constructing wrapper function "line_percent"... 2021-07-15T05:13:59,956 percent_list = line_percent(percent_list,value_list,[n_atoms,n_values]) 2021-07-15T05:13:59,956 Constructing wrapper function "character_motif"... 2021-07-15T05:13:59,956 motif_one_hot = character_motif(motif_one_hot,voronoi_index_list,edge_min,target_voro_idx,frank_kasper,[n_atoms,n_voro,n_target]) 2021-07-15T05:13:59,956 Constructing wrapper function "area_wt_i_fold_symmetry"... 2021-07-15T05:13:59,956 area_wt_i_symm_list = area_wt_i_fold_symmetry(area_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T05:13:59,956 Constructing wrapper function "vol_wt_i_fold_symmetry"... 2021-07-15T05:13:59,956 vol_wt_i_symm_list = vol_wt_i_fold_symmetry(vol_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T05:13:59,956 Constructing wrapper function "voronoi_area_stats"... 2021-07-15T05:13:59,957 area_stats = voronoi_area_stats(area_stats,n_neighbor_list,neighbor_area_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T05:13:59,957 Constructing wrapper function "voronoi_area_stats_separate"... 2021-07-15T05:13:59,957 area_stats_separate = voronoi_area_stats_separate(area_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T05:13:59,957 Constructing wrapper function "voronoi_vol_stats"... 2021-07-15T05:13:59,957 vol_stats = voronoi_vol_stats(vol_stats,n_neighbor_list,neighbor_vol_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T05:13:59,957 Constructing wrapper function "voronoi_vol_stats_separate"... 2021-07-15T05:13:59,957 vol_stats_separate = voronoi_vol_stats_separate(vol_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T05:13:59,957 Constructing wrapper function "voronoi_distance_stats"... 2021-07-15T05:13:59,958 distance_stats = voronoi_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T05:13:59,958 Constructing F90 module support for "determinant_func"... 2021-07-15T05:13:59,958 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T05:13:59,958 deter_value = determinant(matrix) 2021-07-15T05:13:59,958 Constructing F90 module support for "distance"... 2021-07-15T05:13:59,958 Constructing wrapper function "distance.distance_info"... 2021-07-15T05:13:59,958 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:13:59,958 Constructing F90 module support for "quicksort"... 2021-07-15T05:13:59,958 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T05:13:59,959 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T05:13:59,959 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T05:13:59,959 Constructing F90 module support for "cg_function"... 2021-07-15T05:13:59,959 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T05:13:59,959 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T05:13:59,959 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T05:13:59,959 Constructing F90 module support for "angle"... 2021-07-15T05:13:59,959 Constructing wrapper function "angle.angle_info"... 2021-07-15T05:13:59,960 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:13:59,960 Constructing F90 module support for "c_stats"... 2021-07-15T05:13:59,960 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T05:13:59,960 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T05:13:59,960 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T05:13:59,960 Constructing F90 module support for "a_stats"... 2021-07-15T05:13:59,960 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T05:13:59,960 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T05:13:59,960 stats = all_stats(list,[len_bn]) 2021-07-15T05:13:59,961 Wrote C/API module "voronoi_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c" 2021-07-15T05:13:59,961 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90" 2021-07-15T05:13:59,961 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:13:59,961 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:13:59,961 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T05:13:59,961 building extension "amlearn.featurize.src.boop" sources 2021-07-15T05:13:59,961 f2py options: [] 2021-07-15T05:13:59,962 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c 2021-07-15T05:14:00,309 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:00,310 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:00,311 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T05:14:00,311 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T05:14:00,358 appenddecl: "dimension" not implemented. 2021-07-15T05:14:00,365 appenddecl: "dimension" not implemented. 2021-07-15T05:14:00,367 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:00,368 appenddecl: "dimension" not implemented. 2021-07-15T05:14:00,641 Reading fortran codes... 2021-07-15T05:14:00,641 Reading file 'amlearn/featurize/src/boop.f90' (format:free) 2021-07-15T05:14:00,642 {'before': '', 'this': 'use', 'after': ':: angle '} 2021-07-15T05:14:00,642 Line #9 in amlearn/featurize/src/boop.f90:" use :: angle " 2021-07-15T05:14:00,642 analyzeline: Could not crack the use statement. 2021-07-15T05:14:00,642 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T05:14:00,642 Post-processing... 2021-07-15T05:14:00,642 Block: boop 2021-07-15T05:14:00,643 Block: calculate_boop 2021-07-15T05:14:00,643 Block: determinant_func 2021-07-15T05:14:00,643 Block: determinant 2021-07-15T05:14:00,643 Block: distance 2021-07-15T05:14:00,643 Block: distance_info 2021-07-15T05:14:00,643 Block: quicksort 2021-07-15T05:14:00,644 Block: quick_sort 2021-07-15T05:14:00,644 Block: cg_function 2021-07-15T05:14:00,644 Block: calculate_cg 2021-07-15T05:14:00,644 Block: angle 2021-07-15T05:14:00,644 Block: angle_info 2021-07-15T05:14:00,645 Block: c_stats 2021-07-15T05:14:00,645 Block: customize_stats 2021-07-15T05:14:00,645 Block: a_stats 2021-07-15T05:14:00,645 Block: all_stats 2021-07-15T05:14:00,645 Post-processing (stage 2)... 2021-07-15T05:14:00,645 Block: boop 2021-07-15T05:14:00,645 Block: unknown_interface 2021-07-15T05:14:00,645 Block: calculate_boop 2021-07-15T05:14:00,646 Block: determinant_func 2021-07-15T05:14:00,646 Block: determinant 2021-07-15T05:14:00,646 Block: distance 2021-07-15T05:14:00,646 Block: distance_info 2021-07-15T05:14:00,646 Block: quicksort 2021-07-15T05:14:00,646 Block: quick_sort 2021-07-15T05:14:00,646 Block: cg_function 2021-07-15T05:14:00,646 Block: calculate_cg 2021-07-15T05:14:00,646 Block: angle 2021-07-15T05:14:00,647 Block: angle_info 2021-07-15T05:14:00,647 Block: c_stats 2021-07-15T05:14:00,647 Block: customize_stats 2021-07-15T05:14:00,647 Block: a_stats 2021-07-15T05:14:00,647 Block: all_stats 2021-07-15T05:14:00,647 Building modules... 2021-07-15T05:14:00,647 Building module "boop"... 2021-07-15T05:14:00,647 Constructing wrapper function "calculate_boop"... 2021-07-15T05:14:00,647 ql,wlbar,coarse_ql,coarse_wlbar = calculate_boop(atom_coords,pbc,bds,n_neighbor_list,neighbor_lists,low_order,higher_order,coarse_lower_order,coarse_higher_order,ql,wlbar,coarse_ql,coarse_wlbar,[n_atoms,n_neighbor_limit]) 2021-07-15T05:14:00,648 Constructing F90 module support for "determinant_func"... 2021-07-15T05:14:00,648 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T05:14:00,648 deter_value = determinant(matrix) 2021-07-15T05:14:00,648 Constructing F90 module support for "distance"... 2021-07-15T05:14:00,648 Constructing wrapper function "distance.distance_info"... 2021-07-15T05:14:00,648 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:00,648 Constructing F90 module support for "quicksort"... 2021-07-15T05:14:00,648 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T05:14:00,649 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T05:14:00,649 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T05:14:00,649 Constructing F90 module support for "cg_function"... 2021-07-15T05:14:00,649 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T05:14:00,649 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T05:14:00,649 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T05:14:00,649 Constructing F90 module support for "angle"... 2021-07-15T05:14:00,649 Constructing wrapper function "angle.angle_info"... 2021-07-15T05:14:00,649 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:00,650 Constructing F90 module support for "c_stats"... 2021-07-15T05:14:00,650 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T05:14:00,650 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T05:14:00,650 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T05:14:00,650 Constructing F90 module support for "a_stats"... 2021-07-15T05:14:00,650 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T05:14:00,650 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T05:14:00,650 stats = all_stats(list,[len_bn]) 2021-07-15T05:14:00,650 Wrote C/API module "boop" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c" 2021-07-15T05:14:00,651 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90" 2021-07-15T05:14:00,651 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:00,651 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:00,651 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T05:14:00,651 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T05:14:00,651 f2py options: [] 2021-07-15T05:14:00,651 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c 2021-07-15T05:14:00,748 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:00,750 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:00,750 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T05:14:00,751 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T05:14:00,795 appenddecl: "dimension" not implemented. 2021-07-15T05:14:00,807 appenddecl: "dimension" not implemented. 2021-07-15T05:14:00,811 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:00,812 appenddecl: "dimension" not implemented. 2021-07-15T05:14:01,060 Reading fortran codes... 2021-07-15T05:14:01,060 Reading file 'amlearn/featurize/src/mro_stats.f90' (format:free) 2021-07-15T05:14:01,061 {'before': '', 'this': 'use', 'after': ':: c_stats '} 2021-07-15T05:14:01,061 Line #5 in amlearn/featurize/src/mro_stats.f90:" use :: c_stats " 2021-07-15T05:14:01,061 analyzeline: Could not crack the use statement. 2021-07-15T05:14:01,061 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T05:14:01,061 Post-processing... 2021-07-15T05:14:01,061 Block: mro_stats 2021-07-15T05:14:01,062 {'attrspec': ['intent(in)']} 2021-07-15T05:14:01,062 In: :mro_stats:amlearn/featurize/src/mro_stats.f90:sro_to_mro 2021-07-15T05:14:01,062 vars2fortran: No typespec for argument "n_neighbor_limit". 2021-07-15T05:14:01,062 Block: sro_to_mro 2021-07-15T05:14:01,062 Block: determinant_func 2021-07-15T05:14:01,063 Block: determinant 2021-07-15T05:14:01,063 Block: distance 2021-07-15T05:14:01,063 Block: distance_info 2021-07-15T05:14:01,063 Block: quicksort 2021-07-15T05:14:01,063 Block: quick_sort 2021-07-15T05:14:01,063 Block: cg_function 2021-07-15T05:14:01,063 Block: calculate_cg 2021-07-15T05:14:01,064 Block: angle 2021-07-15T05:14:01,064 Block: angle_info 2021-07-15T05:14:01,064 Block: c_stats 2021-07-15T05:14:01,064 Block: customize_stats 2021-07-15T05:14:01,064 Block: a_stats 2021-07-15T05:14:01,064 Block: all_stats 2021-07-15T05:14:01,064 Post-processing (stage 2)... 2021-07-15T05:14:01,065 Block: mro_stats 2021-07-15T05:14:01,065 Block: unknown_interface 2021-07-15T05:14:01,065 Block: sro_to_mro 2021-07-15T05:14:01,065 Block: determinant_func 2021-07-15T05:14:01,065 Block: determinant 2021-07-15T05:14:01,065 Block: distance 2021-07-15T05:14:01,065 Block: distance_info 2021-07-15T05:14:01,065 Block: quicksort 2021-07-15T05:14:01,065 Block: quick_sort 2021-07-15T05:14:01,066 Block: cg_function 2021-07-15T05:14:01,066 Block: calculate_cg 2021-07-15T05:14:01,066 Block: angle 2021-07-15T05:14:01,066 Block: angle_info 2021-07-15T05:14:01,066 Block: c_stats 2021-07-15T05:14:01,066 Block: customize_stats 2021-07-15T05:14:01,066 Block: a_stats 2021-07-15T05:14:01,066 Block: all_stats 2021-07-15T05:14:01,066 Building modules... 2021-07-15T05:14:01,067 Building module "mro_stats"... 2021-07-15T05:14:01,067 Constructing wrapper function "sro_to_mro"... 2021-07-15T05:14:01,067 mro_feature = sro_to_mro(sro_feature,n_neighbor_list,neighbor_lists,stats_types,mro_feature,[n_atoms,n_neighbor_limit,sum_stats_types]) 2021-07-15T05:14:01,067 Constructing F90 module support for "determinant_func"... 2021-07-15T05:14:01,067 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T05:14:01,067 deter_value = determinant(matrix) 2021-07-15T05:14:01,067 Constructing F90 module support for "distance"... 2021-07-15T05:14:01,067 Constructing wrapper function "distance.distance_info"... 2021-07-15T05:14:01,068 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:01,068 Constructing F90 module support for "quicksort"... 2021-07-15T05:14:01,068 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T05:14:01,068 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T05:14:01,068 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T05:14:01,068 Constructing F90 module support for "cg_function"... 2021-07-15T05:14:01,068 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T05:14:01,068 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T05:14:01,068 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T05:14:01,069 Constructing F90 module support for "angle"... 2021-07-15T05:14:01,069 Constructing wrapper function "angle.angle_info"... 2021-07-15T05:14:01,069 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:01,069 Constructing F90 module support for "c_stats"... 2021-07-15T05:14:01,069 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T05:14:01,069 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T05:14:01,069 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T05:14:01,069 Constructing F90 module support for "a_stats"... 2021-07-15T05:14:01,070 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T05:14:01,070 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T05:14:01,070 stats = all_stats(list,[len_bn]) 2021-07-15T05:14:01,070 Wrote C/API module "mro_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c" 2021-07-15T05:14:01,070 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90" 2021-07-15T05:14:01,070 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:01,070 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:01,070 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T05:14:01,071 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T05:14:01,071 f2py options: [] 2021-07-15T05:14:01,071 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c 2021-07-15T05:14:01,179 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:01,180 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:01,181 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T05:14:01,181 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T05:14:01,211 appenddecl: "dimension" not implemented. 2021-07-15T05:14:01,218 appenddecl: "dimension" not implemented. 2021-07-15T05:14:01,220 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:01,221 appenddecl: "dimension" not implemented. 2021-07-15T05:14:01,683 Reading fortran codes... 2021-07-15T05:14:01,684 Reading file 'amlearn/featurize/src/neighbor_data.f90' (format:free) 2021-07-15T05:14:01,685 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T05:14:01,685 Post-processing... 2021-07-15T05:14:01,685 Block: neighbor_data 2021-07-15T05:14:01,686 Block: add_neighbor_features 2021-07-15T05:14:01,686 Block: determinant_func 2021-07-15T05:14:01,687 Block: determinant 2021-07-15T05:14:01,687 Block: distance 2021-07-15T05:14:01,688 Block: distance_info 2021-07-15T05:14:01,688 Block: quicksort 2021-07-15T05:14:01,689 Block: quick_sort 2021-07-15T05:14:01,689 Block: cg_function 2021-07-15T05:14:01,690 Block: calculate_cg 2021-07-15T05:14:01,690 Block: angle 2021-07-15T05:14:01,691 Block: angle_info 2021-07-15T05:14:01,691 Block: c_stats 2021-07-15T05:14:01,692 Block: customize_stats 2021-07-15T05:14:01,692 Block: a_stats 2021-07-15T05:14:01,693 Block: all_stats 2021-07-15T05:14:01,693 Post-processing (stage 2)... 2021-07-15T05:14:01,694 Block: neighbor_data 2021-07-15T05:14:01,694 Block: unknown_interface 2021-07-15T05:14:01,695 Block: add_neighbor_features 2021-07-15T05:14:01,695 Block: determinant_func 2021-07-15T05:14:01,696 Block: determinant 2021-07-15T05:14:01,696 Block: distance 2021-07-15T05:14:01,697 Block: distance_info 2021-07-15T05:14:01,697 Block: quicksort 2021-07-15T05:14:01,698 Block: quick_sort 2021-07-15T05:14:01,698 Block: cg_function 2021-07-15T05:14:01,698 Block: calculate_cg 2021-07-15T05:14:01,698 Block: angle 2021-07-15T05:14:01,699 Block: angle_info 2021-07-15T05:14:01,699 Block: c_stats 2021-07-15T05:14:01,699 Block: customize_stats 2021-07-15T05:14:01,699 Block: a_stats 2021-07-15T05:14:01,700 Block: all_stats 2021-07-15T05:14:01,700 Building modules... 2021-07-15T05:14:01,700 Building module "neighbor_data"... 2021-07-15T05:14:01,700 Constructing wrapper function "add_neighbor_features"... 2021-07-15T05:14:01,701 features_new = add_neighbor_features(pred_last,neigh_voro,probs,features_new,[n_atoms,n_neighs,n_probs,n_features]) 2021-07-15T05:14:01,701 Constructing F90 module support for "determinant_func"... 2021-07-15T05:14:01,701 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T05:14:01,701 deter_value = determinant(matrix) 2021-07-15T05:14:01,701 Constructing F90 module support for "distance"... 2021-07-15T05:14:01,701 Constructing wrapper function "distance.distance_info"... 2021-07-15T05:14:01,702 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:01,702 Constructing F90 module support for "quicksort"... 2021-07-15T05:14:01,702 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T05:14:01,702 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T05:14:01,702 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T05:14:01,702 Constructing F90 module support for "cg_function"... 2021-07-15T05:14:01,703 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T05:14:01,703 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T05:14:01,703 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T05:14:01,703 Constructing F90 module support for "angle"... 2021-07-15T05:14:01,703 Constructing wrapper function "angle.angle_info"... 2021-07-15T05:14:01,703 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:01,704 Constructing F90 module support for "c_stats"... 2021-07-15T05:14:01,704 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T05:14:01,704 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T05:14:01,704 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T05:14:01,705 Constructing F90 module support for "a_stats"... 2021-07-15T05:14:01,705 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T05:14:01,705 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T05:14:01,705 stats = all_stats(list,[len_bn]) 2021-07-15T05:14:01,706 Wrote C/API module "neighbor_data" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c" 2021-07-15T05:14:01,706 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90" 2021-07-15T05:14:01,706 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:01,707 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:01,707 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T05:14:01,707 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T05:14:01,707 f2py options: [] 2021-07-15T05:14:01,708 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c 2021-07-15T05:14:01,817 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:01,818 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:01,819 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T05:14:01,819 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T05:14:01,853 appenddecl: "dimension" not implemented. 2021-07-15T05:14:01,861 appenddecl: "dimension" not implemented. 2021-07-15T05:14:01,863 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:01,864 appenddecl: "dimension" not implemented. 2021-07-15T05:14:02,153 Reading fortran codes... 2021-07-15T05:14:02,153 Reading file 'amlearn/featurize/src/distance_stats.f90' (format:free) 2021-07-15T05:14:02,153 {'before': '', 'this': 'use', 'after': ':: a_stats '} 2021-07-15T05:14:02,153 Line #17 in amlearn/featurize/src/distance_stats.f90:" use :: a_stats " 2021-07-15T05:14:02,153 analyzeline: Could not crack the use statement. 2021-07-15T05:14:02,153 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T05:14:02,154 Post-processing... 2021-07-15T05:14:02,154 Block: distance_stats 2021-07-15T05:14:02,154 Block: cn_dist 2021-07-15T05:14:02,154 Block: cutoff_distance_stats 2021-07-15T05:14:02,154 Block: determinant_func 2021-07-15T05:14:02,154 Block: determinant 2021-07-15T05:14:02,154 Block: distance 2021-07-15T05:14:02,155 Block: distance_info 2021-07-15T05:14:02,155 Block: quicksort 2021-07-15T05:14:02,155 Block: quick_sort 2021-07-15T05:14:02,155 Block: cg_function 2021-07-15T05:14:02,155 Block: calculate_cg 2021-07-15T05:14:02,155 Block: angle 2021-07-15T05:14:02,155 Block: angle_info 2021-07-15T05:14:02,156 Block: c_stats 2021-07-15T05:14:02,156 Block: customize_stats 2021-07-15T05:14:02,156 Block: a_stats 2021-07-15T05:14:02,156 Block: all_stats 2021-07-15T05:14:02,156 Post-processing (stage 2)... 2021-07-15T05:14:02,156 Block: distance_stats 2021-07-15T05:14:02,156 Block: unknown_interface 2021-07-15T05:14:02,157 Block: cn_dist 2021-07-15T05:14:02,157 Block: cutoff_distance_stats 2021-07-15T05:14:02,157 Block: determinant_func 2021-07-15T05:14:02,157 Block: determinant 2021-07-15T05:14:02,157 Block: distance 2021-07-15T05:14:02,157 Block: distance_info 2021-07-15T05:14:02,157 Block: quicksort 2021-07-15T05:14:02,157 Block: quick_sort 2021-07-15T05:14:02,157 Block: cg_function 2021-07-15T05:14:02,158 Block: calculate_cg 2021-07-15T05:14:02,158 Block: angle 2021-07-15T05:14:02,158 Block: angle_info 2021-07-15T05:14:02,158 Block: c_stats 2021-07-15T05:14:02,158 Block: customize_stats 2021-07-15T05:14:02,158 Block: a_stats 2021-07-15T05:14:02,158 Block: all_stats 2021-07-15T05:14:02,158 Building modules... 2021-07-15T05:14:02,158 Building module "distance_stats"... 2021-07-15T05:14:02,158 Constructing wrapper function "cn_dist"... 2021-07-15T05:14:02,159 cn = cn_dist(n_neighbor_list) 2021-07-15T05:14:02,159 Constructing wrapper function "cutoff_distance_stats"... 2021-07-15T05:14:02,159 cutoff_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,n_neighbor_limit]) 2021-07-15T05:14:02,159 Constructing F90 module support for "determinant_func"... 2021-07-15T05:14:02,159 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T05:14:02,159 deter_value = determinant(matrix) 2021-07-15T05:14:02,159 Constructing F90 module support for "distance"... 2021-07-15T05:14:02,159 Constructing wrapper function "distance.distance_info"... 2021-07-15T05:14:02,159 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:02,160 Constructing F90 module support for "quicksort"... 2021-07-15T05:14:02,160 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T05:14:02,160 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T05:14:02,160 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T05:14:02,160 Constructing F90 module support for "cg_function"... 2021-07-15T05:14:02,160 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T05:14:02,160 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T05:14:02,160 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T05:14:02,160 Constructing F90 module support for "angle"... 2021-07-15T05:14:02,161 Constructing wrapper function "angle.angle_info"... 2021-07-15T05:14:02,161 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:02,161 Constructing F90 module support for "c_stats"... 2021-07-15T05:14:02,161 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T05:14:02,161 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T05:14:02,161 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T05:14:02,161 Constructing F90 module support for "a_stats"... 2021-07-15T05:14:02,161 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T05:14:02,161 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T05:14:02,162 stats = all_stats(list,[len_bn]) 2021-07-15T05:14:02,162 Wrote C/API module "distance_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c" 2021-07-15T05:14:02,162 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90" 2021-07-15T05:14:02,162 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:02,162 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:02,162 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T05:14:02,162 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T05:14:02,162 f2py options: [] 2021-07-15T05:14:02,163 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c 2021-07-15T05:14:02,272 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:02,274 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:02,274 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T05:14:02,274 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T05:14:02,309 appenddecl: "dimension" not implemented. 2021-07-15T05:14:02,316 appenddecl: "dimension" not implemented. 2021-07-15T05:14:02,318 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T05:14:02,319 appenddecl: "dimension" not implemented. 2021-07-15T05:14:02,581 Reading fortran codes... 2021-07-15T05:14:02,581 Reading file 'amlearn/featurize/src/distance_nn.f90' (format:free) 2021-07-15T05:14:02,581 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T05:14:02,581 Line #24 in amlearn/featurize/src/distance_nn.f90:" use :: distance " 2021-07-15T05:14:02,581 analyzeline: Could not crack the use statement. 2021-07-15T05:14:02,582 {'before': '', 'this': 'use', 'after': ':: quicksort '} 2021-07-15T05:14:02,582 Line #26 in amlearn/featurize/src/distance_nn.f90:" use :: quicksort " 2021-07-15T05:14:02,582 analyzeline: Could not crack the use statement. 2021-07-15T05:14:02,582 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T05:14:02,582 Post-processing... 2021-07-15T05:14:02,582 Block: distance_nn 2021-07-15T05:14:02,582 Block: distance_neighbor 2021-07-15T05:14:02,583 Block: determinant_func 2021-07-15T05:14:02,583 Block: determinant 2021-07-15T05:14:02,583 Block: distance 2021-07-15T05:14:02,583 Block: distance_info 2021-07-15T05:14:02,583 Block: quicksort 2021-07-15T05:14:02,583 Block: quick_sort 2021-07-15T05:14:02,584 Block: cg_function 2021-07-15T05:14:02,584 Block: calculate_cg 2021-07-15T05:14:02,584 Block: angle 2021-07-15T05:14:02,584 Block: angle_info 2021-07-15T05:14:02,584 Block: c_stats 2021-07-15T05:14:02,584 Block: customize_stats 2021-07-15T05:14:02,584 Block: a_stats 2021-07-15T05:14:02,584 Block: all_stats 2021-07-15T05:14:02,585 Post-processing (stage 2)... 2021-07-15T05:14:02,585 Block: distance_nn 2021-07-15T05:14:02,585 Block: unknown_interface 2021-07-15T05:14:02,585 Block: distance_neighbor 2021-07-15T05:14:02,585 Block: determinant_func 2021-07-15T05:14:02,585 Block: determinant 2021-07-15T05:14:02,586 Block: distance 2021-07-15T05:14:02,586 Block: distance_info 2021-07-15T05:14:02,586 Block: quicksort 2021-07-15T05:14:02,586 Block: quick_sort 2021-07-15T05:14:02,586 Block: cg_function 2021-07-15T05:14:02,586 Block: calculate_cg 2021-07-15T05:14:02,587 Block: angle 2021-07-15T05:14:02,587 Block: angle_info 2021-07-15T05:14:02,587 Block: c_stats 2021-07-15T05:14:02,587 Block: customize_stats 2021-07-15T05:14:02,587 Block: a_stats 2021-07-15T05:14:02,587 Block: all_stats 2021-07-15T05:14:02,587 Building modules... 2021-07-15T05:14:02,588 Building module "distance_nn"... 2021-07-15T05:14:02,588 Constructing wrapper function "distance_neighbor"... 2021-07-15T05:14:02,588 n_neighbor_list,neighbor_lists,neighbor_distance_lists = distance_neighbor(atom_type,atom_coords,distance_cutoff,allow_neighbor_limit,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_distance_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T05:14:02,588 Constructing F90 module support for "determinant_func"... 2021-07-15T05:14:02,588 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T05:14:02,588 deter_value = determinant(matrix) 2021-07-15T05:14:02,589 Constructing F90 module support for "distance"... 2021-07-15T05:14:02,589 Constructing wrapper function "distance.distance_info"... 2021-07-15T05:14:02,589 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:02,589 Constructing F90 module support for "quicksort"... 2021-07-15T05:14:02,589 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T05:14:02,589 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T05:14:02,590 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T05:14:02,590 Constructing F90 module support for "cg_function"... 2021-07-15T05:14:02,590 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T05:14:02,590 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T05:14:02,590 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T05:14:02,590 Constructing F90 module support for "angle"... 2021-07-15T05:14:02,591 Constructing wrapper function "angle.angle_info"... 2021-07-15T05:14:02,591 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T05:14:02,591 Constructing F90 module support for "c_stats"... 2021-07-15T05:14:02,591 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T05:14:02,591 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T05:14:02,591 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T05:14:02,592 Constructing F90 module support for "a_stats"... 2021-07-15T05:14:02,592 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T05:14:02,592 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T05:14:02,592 stats = all_stats(list,[len_bn]) 2021-07-15T05:14:02,592 Wrote C/API module "distance_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c" 2021-07-15T05:14:02,592 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90" 2021-07-15T05:14:02,592 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:02,593 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:02,593 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T05:14:02,593 build_src: building npy-pkg config files 2021-07-15T05:14:02,593 creating /tmp/pip-pip-egg-info-ijq7l6je/amlearn.egg-info 2021-07-15T05:14:02,593 writing /tmp/pip-pip-egg-info-ijq7l6je/amlearn.egg-info/PKG-INFO 2021-07-15T05:14:02,594 writing dependency_links to /tmp/pip-pip-egg-info-ijq7l6je/amlearn.egg-info/dependency_links.txt 2021-07-15T05:14:02,594 writing requirements to /tmp/pip-pip-egg-info-ijq7l6je/amlearn.egg-info/requires.txt 2021-07-15T05:14:02,594 writing top-level names to /tmp/pip-pip-egg-info-ijq7l6je/amlearn.egg-info/top_level.txt 2021-07-15T05:14:02,594 writing manifest file '/tmp/pip-pip-egg-info-ijq7l6je/amlearn.egg-info/SOURCES.txt' 2021-07-15T05:14:02,663 reading manifest file '/tmp/pip-pip-egg-info-ijq7l6je/amlearn.egg-info/SOURCES.txt' 2021-07-15T05:14:02,671 writing manifest file '/tmp/pip-pip-egg-info-ijq7l6je/amlearn.egg-info/SOURCES.txt' 2021-07-15T05:14:02,814 Source in /tmp/pip-wheel-rbr2s4f1/amlearn_520fd246dcce4f43ab714b28a6d1076f has version 0.2.4, which satisfies requirement amlearn==0.2.4 from https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 2021-07-15T05:14:02,815 Removed amlearn==0.2.4 from https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 from build tracker '/tmp/pip-req-tracker-n6llfmnj' 2021-07-15T05:14:02,820 Created temporary directory: /tmp/pip-unpack-2_pwvl7z 2021-07-15T05:14:02,821 Building wheels for collected packages: amlearn 2021-07-15T05:14:02,825 Created temporary directory: /tmp/pip-wheel-zq91ghtt 2021-07-15T05:14:02,826 Building wheel for amlearn (setup.py): started 2021-07-15T05:14:02,826 Destination directory: /tmp/pip-wheel-zq91ghtt 2021-07-15T05:14:02,827 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rbr2s4f1/amlearn_520fd246dcce4f43ab714b28a6d1076f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rbr2s4f1/amlearn_520fd246dcce4f43ab714b28a6d1076f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zq91ghtt 2021-07-15T05:14:05,403 running bdist_wheel 2021-07-15T05:14:05,405 running build 2021-07-15T05:14:05,405 running config_cc 2021-07-15T05:14:05,405 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-07-15T05:14:05,406 running config_fc 2021-07-15T05:14:05,406 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-07-15T05:14:05,407 running build_src 2021-07-15T05:14:05,407 build_src 2021-07-15T05:14:05,407 building extension "amlearn.featurize.src.utils" sources 2021-07-15T05:14:05,407 f2py options: [] 2021-07-15T05:14:05,407 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:05,407 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:05,505 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T05:14:05,505 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T05:14:05,505 f2py options: [] 2021-07-15T05:14:05,506 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:05,506 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:05,506 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T05:14:05,506 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T05:14:05,506 f2py options: [] 2021-07-15T05:14:05,506 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:05,506 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:05,507 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T05:14:05,507 building extension "amlearn.featurize.src.boop" sources 2021-07-15T05:14:05,507 f2py options: [] 2021-07-15T05:14:05,507 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:05,507 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:05,507 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T05:14:05,508 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T05:14:05,508 f2py options: [] 2021-07-15T05:14:05,508 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:05,508 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:05,508 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T05:14:05,508 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T05:14:05,508 f2py options: [] 2021-07-15T05:14:05,509 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:05,509 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:05,509 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T05:14:05,509 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T05:14:05,509 f2py options: [] 2021-07-15T05:14:05,509 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:05,509 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:05,510 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T05:14:05,510 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T05:14:05,510 f2py options: [] 2021-07-15T05:14:05,510 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T05:14:05,510 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T05:14:05,510 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T05:14:05,510 build_src: building npy-pkg config files 2021-07-15T05:14:05,512 running build_py 2021-07-15T05:14:05,516 creating build/lib.linux-armv7l-3.9 2021-07-15T05:14:05,516 creating build/lib.linux-armv7l-3.9/amlearn 2021-07-15T05:14:05,518 copying amlearn/_version.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T05:14:05,521 copying amlearn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T05:14:05,523 creating build/lib.linux-armv7l-3.9/scripts 2021-07-15T05:14:05,524 copying scripts/featurize_interstice.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T05:14:05,526 copying scripts/feature_violinplot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T05:14:05,528 copying scripts/__init__.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T05:14:05,530 copying scripts/pdp_plot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T05:14:05,531 copying scripts/generalization.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T05:14:05,533 copying scripts/fractal_analysis.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T05:14:05,536 copying scripts/distribution.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T05:14:05,538 copying scripts/featurize_bp_symmfunc.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T05:14:05,541 creating build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T05:14:05,542 copying amlearn/learn/base.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T05:14:05,544 copying amlearn/learn/classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T05:14:05,547 copying amlearn/learn/preprocessor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T05:14:05,550 copying amlearn/learn/regressor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T05:14:05,553 copying amlearn/learn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T05:14:05,555 creating build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:05,556 copying amlearn/featurize/nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:05,559 copying amlearn/featurize/symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:05,562 copying amlearn/featurize/base.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:05,564 copying amlearn/featurize/short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:05,569 copying amlearn/featurize/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:05,570 copying amlearn/featurize/pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:05,573 copying amlearn/featurize/medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:05,577 creating build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,578 copying amlearn/utils/check.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,581 copying amlearn/utils/directory.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,583 copying amlearn/utils/verbose.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,585 copying amlearn/utils/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,587 copying amlearn/utils/data.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,589 copying amlearn/utils/packing.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,591 copying amlearn/utils/basetest.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,593 copying amlearn/utils/logging.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,595 copying amlearn/utils/backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,599 creating build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T05:14:05,599 copying amlearn/learn/tests/test_classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T05:14:05,602 copying amlearn/learn/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T05:14:05,604 creating build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T05:14:05,605 copying amlearn/learn/sklearn_patch/_validation.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T05:14:05,609 copying amlearn/learn/sklearn_patch/_split.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T05:14:05,613 copying amlearn/learn/sklearn_patch/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T05:14:05,616 creating build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T05:14:05,617 copying amlearn/featurize/src/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T05:14:05,619 creating build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T05:14:05,620 copying amlearn/featurize/tests/test_medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T05:14:05,622 copying amlearn/featurize/tests/test_short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T05:14:05,625 copying amlearn/featurize/tests/test_nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T05:14:05,626 copying amlearn/featurize/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T05:14:05,628 copying amlearn/featurize/tests/test_featurizer_pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T05:14:05,630 copying amlearn/featurize/tests/test_symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T05:14:05,633 creating build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T05:14:05,634 copying amlearn/utils/tests/test_data.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T05:14:05,636 copying amlearn/utils/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T05:14:05,637 copying amlearn/utils/tests/test_backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T05:14:05,639 copying amlearn/utils/default_environment.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,641 copying amlearn/utils/amlearn_logging.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,643 copying amlearn/utils/PTE.json -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T05:14:05,652 running build_ext 2021-07-15T05:14:05,676 customize UnixCCompiler 2021-07-15T05:14:05,679 customize UnixCCompiler using build_ext 2021-07-15T05:14:05,881 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2021-07-15T05:14:05,882 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:05,883 creating /tmp/tmp2sfid8rm/home 2021-07-15T05:14:05,884 creating /tmp/tmp2sfid8rm/home/piwheels 2021-07-15T05:14:05,884 creating /tmp/tmp2sfid8rm/home/piwheels/.local 2021-07-15T05:14:05,885 creating /tmp/tmp2sfid8rm/home/piwheels/.local/lib 2021-07-15T05:14:05,886 creating /tmp/tmp2sfid8rm/home/piwheels/.local/lib/python3.9 2021-07-15T05:14:05,886 creating /tmp/tmp2sfid8rm/home/piwheels/.local/lib/python3.9/site-packages 2021-07-15T05:14:05,887 creating /tmp/tmp2sfid8rm/home/piwheels/.local/lib/python3.9/site-packages/numpy 2021-07-15T05:14:05,888 creating /tmp/tmp2sfid8rm/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils 2021-07-15T05:14:05,889 creating /tmp/tmp2sfid8rm/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks 2021-07-15T05:14:05,889 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:05,890 extra options: '-march=native' 2021-07-15T05:14:05,983 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2021-07-15T05:14:05,984 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:05,984 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:05,984 extra options: '-O3' 2021-07-15T05:14:06,077 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2021-07-15T05:14:06,077 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:06,078 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:06,078 extra options: '-Werror' 2021-07-15T05:14:06,220 CCompilerOpt.__init__[1696] : check requested baseline 2021-07-15T05:14:06,227 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2021-07-15T05:14:06,235 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2021-07-15T05:14:06,235 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:06,235 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:06,235 extra options: '-mfpu=neon' 2021-07-15T05:14:06,573 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2021-07-15T05:14:06,574 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:06,575 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:06,575 extra options: '-mfpu=neon -Werror' 2021-07-15T05:14:06,969 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T05:14:06,969 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:06,969 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:06,970 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2021-07-15T05:14:07,064 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2021-07-15T05:14:07,065 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:07,065 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:07,065 extra options: '-mfpu=neon-vfpv4' 2021-07-15T05:14:07,158 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2021-07-15T05:14:07,159 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:07,159 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:07,159 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2021-07-15T05:14:07,568 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T05:14:07,568 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:07,569 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:07,569 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2021-07-15T05:14:07,976 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T05:14:07,977 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:07,977 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:07,977 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2021-07-15T05:14:08,076 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T05:14:08,077 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:08,077 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:08,078 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2021-07-15T05:14:08,541 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2021-07-15T05:14:08,541 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:08,542 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:08,543 extra options: '-march=armv8.2-a+dotprod' 2021-07-15T05:14:08,634 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2021-07-15T05:14:08,635 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:08,636 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:08,636 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2021-07-15T05:14:09,106 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmp2sfid8rm/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmp2sfid8rm/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2021-07-15T05:14:09,107 /tmp/ccQzqOY1.s: Assembler messages: 2021-07-15T05:14:09,107 /tmp/ccQzqOY1.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2021-07-15T05:14:09,115 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T05:14:09,122 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2021-07-15T05:14:09,123 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:09,123 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:09,123 extra options: '-march=armv8.2-a+fp16' 2021-07-15T05:14:09,216 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2021-07-15T05:14:09,217 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:09,218 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:09,218 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2021-07-15T05:14:09,688 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2021-07-15T05:14:09,689 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:09,690 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:09,690 extra options: '-march=armv8.2-a+fp16fml' 2021-07-15T05:14:09,788 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2021-07-15T05:14:09,789 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:09,790 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T05:14:09,791 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2021-07-15T05:14:10,222 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmp2sfid8rm/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmp2sfid8rm/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2021-07-15T05:14:10,222 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2021-07-15T05:14:10,222 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2021-07-15T05:14:10,222 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T05:14:10,222 | ^~~~~~~~~~~~~~ 2021-07-15T05:14:10,222 | vfmlal_low_f16 2021-07-15T05:14:10,223 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2021-07-15T05:14:10,223 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T05:14:10,223 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T05:14:10,223 | | 2021-07-15T05:14:10,223 | int 2021-07-15T05:14:10,223 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T05:14:10,223 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2021-07-15T05:14:10,224 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2021-07-15T05:14:10,224 | ~~~~~~~~~~~~^~~ 2021-07-15T05:14:10,224 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2021-07-15T05:14:10,224 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T05:14:10,224 | ^~~~~~~~~~~~~~~~ 2021-07-15T05:14:10,224 | vfmlslq_high_f16 2021-07-15T05:14:10,224 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2021-07-15T05:14:10,224 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T05:14:10,225 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T05:14:10,225 | | 2021-07-15T05:14:10,225 | int 2021-07-15T05:14:10,225 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T05:14:10,225 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2021-07-15T05:14:10,225 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2021-07-15T05:14:10,225 | ~~~~~~~~~~~~^~~ 2021-07-15T05:14:10,225 cc1: all warnings being treated as errors 2021-07-15T05:14:10,229 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T05:14:10,235 CCompilerOpt.__init__[1721] : initialize targets groups 2021-07-15T05:14:10,241 CCompilerOpt.__init__[1723] : parse target group simd_test 2021-07-15T05:14:10,246 CCompilerOpt._parse_target_tokens[1934] : skip targets ((AVX2 FMA3) FMA4 AVX512_SKX VSX VSX2 AVX512F VSX3 SSE2 XOP SSE42) not part of baseline or dispatch-able features 2021-07-15T05:14:10,252 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2021-07-15T05:14:10,258 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2021-07-15T05:14:10,713 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2021-07-15T05:14:10,713 customize Gnu95FCompiler 2021-07-15T05:14:10,716 Found executable /usr/bin/gfortran 2021-07-15T05:14:10,776 customize Gnu95FCompiler 2021-07-15T05:14:10,839 customize Gnu95FCompiler using build_ext 2021-07-15T05:14:10,840 building 'amlearn.featurize.src.utils' extension 2021-07-15T05:14:10,843 compiling C sources 2021-07-15T05:14:10,843 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T05:14:10,844 creating build/temp.linux-armv7l-3.9/build 2021-07-15T05:14:10,844 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T05:14:10,845 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T05:14:10,846 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:10,847 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T05:14:10,848 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build 2021-07-15T05:14:10,848 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T05:14:10,849 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T05:14:10,850 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:10,851 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T05:14:10,852 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T05:14:10,877 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.carm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T05:14:11,317 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T05:14:11,317 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T05:14:11,317 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T05:14:11,317 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T05:14:11,318 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c:2: 2021-07-15T05:14:11,318 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T05:14:11,318 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T05:14:11,318 | ^~~~~~~ 2021-07-15T05:14:11,318 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T05:14:11,318 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T05:14:11,318 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T05:14:11,319 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T05:14:11,319 from build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:16: 2021-07-15T05:14:11,319 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T05:14:11,319 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T05:14:11,319 | ^~~~~~~ 2021-07-15T05:14:11,446 build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:109:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-07-15T05:14:11,446 109 | static int f2py_size(PyArrayObject* var, ...) 2021-07-15T05:14:11,446 | ^~~~~~~~~ 2021-07-15T05:14:12,605 compiling Fortran 90 module sources 2021-07-15T05:14:12,606 creating build/temp.linux-armv7l-3.9/amlearn 2021-07-15T05:14:12,606 creating build/temp.linux-armv7l-3.9/amlearn/featurize 2021-07-15T05:14:12,607 creating build/temp.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T05:14:12,608 Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T05:14:12,608 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T05:14:12,608 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T05:14:12,609 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T05:14:12,609 extra options: '-Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src' 2021-07-15T05:14:12,610 gfortran:f90: amlearn/featurize/src/utils.f90 2021-07-15T05:14:12,714 amlearn/featurize/src/utils.f90:259:16: 2021-07-15T05:14:12,714 259 | REAL(16) :: std 2021-07-15T05:14:12,715 | 1 2021-07-15T05:14:12,715 Error: Kind 16 not supported for type REAL at (1) 2021-07-15T05:14:12,716 amlearn/featurize/src/utils.f90:285:18: 2021-07-15T05:14:12,716 285 | std = std + (list(atom) - mean)**2 2021-07-15T05:14:12,717 | 1 2021-07-15T05:14:12,717 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] 2021-07-15T05:14:12,726 error: Command "/usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops -Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c -c amlearn/featurize/src/utils.f90 -o build/temp.linux-armv7l-3.9/amlearn/featurize/src/utils.o -Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src" failed with exit status 1 2021-07-15T05:14:12,727 ########### EXT COMPILER OPTIMIZATION ########### 2021-07-15T05:14:12,727 Platform : 2021-07-15T05:14:12,727 Architecture: armhf 2021-07-15T05:14:12,727 Compiler : gcc 2021-07-15T05:14:12,728 CPU baseline : 2021-07-15T05:14:12,728 Requested : 'min' 2021-07-15T05:14:12,728 Enabled : none 2021-07-15T05:14:12,728 Flags : none 2021-07-15T05:14:12,728 Extra checks: none 2021-07-15T05:14:12,728 CPU dispatch : 2021-07-15T05:14:12,728 Requested : 'max -xop -fma4' 2021-07-15T05:14:12,729 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2021-07-15T05:14:12,729 Generated : none 2021-07-15T05:14:12,729 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-wheel-rbr2s4f1/amlearn_520fd246dcce4f43ab714b28a6d1076f/build/temp.linux-armv7l-3.9/ccompiler_opt_cache_ext.py 2021-07-15T05:14:12,897 Building wheel for amlearn (setup.py): finished with status 'error' 2021-07-15T05:14:12,898 ERROR: Failed building wheel for amlearn 2021-07-15T05:14:12,898 Running setup.py clean for amlearn 2021-07-15T05:14:12,899 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rbr2s4f1/amlearn_520fd246dcce4f43ab714b28a6d1076f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rbr2s4f1/amlearn_520fd246dcce4f43ab714b28a6d1076f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T05:14:14,566 running clean 2021-07-15T05:14:14,568 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T05:14:14,583 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-15T05:14:14,607 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T05:14:14,608 'build/scripts.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T05:14:14,741 Failed to build amlearn 2021-07-15T05:14:14,741 ERROR: Failed to build one or more wheels 2021-07-15T05:14:14,742 Exception information: 2021-07-15T05:14:14,742 Traceback (most recent call last): 2021-07-15T05:14:14,742 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T05:14:14,742 status = self.run(options, args) 2021-07-15T05:14:14,742 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T05:14:14,742 return func(self, options, args) 2021-07-15T05:14:14,742 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T05:14:14,742 raise CommandError( 2021-07-15T05:14:14,742 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T05:14:14,744 Removed build tracker: '/tmp/pip-req-tracker-n6llfmnj'