2021-07-15T08:14:40,932 Created temporary directory: /tmp/pip-ephem-wheel-cache-j0n3hzqt 2021-07-15T08:14:40,934 Created temporary directory: /tmp/pip-req-tracker-3dq3xtmi 2021-07-15T08:14:40,934 Initialized build tracking at /tmp/pip-req-tracker-3dq3xtmi 2021-07-15T08:14:40,935 Created build tracker: /tmp/pip-req-tracker-3dq3xtmi 2021-07-15T08:14:40,935 Entered build tracker: /tmp/pip-req-tracker-3dq3xtmi 2021-07-15T08:14:40,935 Created temporary directory: /tmp/pip-wheel-5jrp9dsk 2021-07-15T08:14:40,961 1 location(s) to search for versions of amlearn: 2021-07-15T08:14:40,961 * https://pypi.org/simple/amlearn/ 2021-07-15T08:14:40,962 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2021-07-15T08:14:40,963 Getting page https://pypi.org/simple/amlearn/ 2021-07-15T08:14:40,964 Found index url https://pypi.org/simple 2021-07-15T08:14:41,129 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz#sha256=3feb0259f07d515171eb3f5dbcd60a40a90a2c04b9114be537d617d1df4addee (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2021-07-15T08:14:41,130 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz#sha256=20a099bc7da2324c247c1f5bd4c61cbf207ad59248a0c161fac0a08d11112f36 (from https://pypi.org/simple/amlearn/), version: 0.1.0 2021-07-15T08:14:41,130 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz#sha256=02a6393944cbf8a784db0d554708f37a035c9203518531e46e870bc1453cef7f (from https://pypi.org/simple/amlearn/), version: 0.2.0 2021-07-15T08:14:41,130 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz#sha256=036b1f5f9152145124dc681a3345d518f374c1a8785f602addf4bc27494917f3 (from https://pypi.org/simple/amlearn/), version: 0.2.1 2021-07-15T08:14:41,131 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz#sha256=1ad6512e2146f4e145e097463f4575427820335c59fca3e6bfb41806c786799d (from https://pypi.org/simple/amlearn/), version: 0.2.2 2021-07-15T08:14:41,131 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 (from https://pypi.org/simple/amlearn/), version: 0.2.3 2021-07-15T08:14:41,131 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 (from https://pypi.org/simple/amlearn/), version: 0.2.4 2021-07-15T08:14:41,132 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c (from https://pypi.org/simple/amlearn/), version: 0.2.5 2021-07-15T08:14:41,132 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba (from https://pypi.org/simple/amlearn/), version: 0.2.6 2021-07-15T08:14:41,132 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 (from https://pypi.org/simple/amlearn/), version: 0.3.1 2021-07-15T08:14:41,132 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e (from https://pypi.org/simple/amlearn/), version: 0.3.2 2021-07-15T08:14:41,133 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d (from https://pypi.org/simple/amlearn/), version: 0.3.3 2021-07-15T08:14:41,133 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 (from https://pypi.org/simple/amlearn/), version: 0.3.4 2021-07-15T08:14:41,133 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2021-07-15T08:14:41,152 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2021-07-15T08:14:41,171 Collecting amlearn==0.2.5 2021-07-15T08:14:41,173 Created temporary directory: /tmp/pip-unpack-vyfo5b5w 2021-07-15T08:14:41,212 Downloading amlearn-0.2.5.tar.gz (83 kB) 2021-07-15T08:14:41,370 Added amlearn==0.2.5 from https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c to build tracker '/tmp/pip-req-tracker-3dq3xtmi' 2021-07-15T08:14:41,371 Running setup.py (path:/tmp/pip-wheel-5jrp9dsk/amlearn_817419ad536d4f7c8a76ac92dbcea768/setup.py) egg_info for package amlearn 2021-07-15T08:14:41,372 Created temporary directory: /tmp/pip-pip-egg-info-tr1q7rxx 2021-07-15T08:14:41,372 Running command python setup.py egg_info 2021-07-15T08:14:43,032 running egg_info 2021-07-15T08:14:43,033 running build_src 2021-07-15T08:14:43,036 build_src 2021-07-15T08:14:43,036 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:14:43,036 f2py options: [] 2021-07-15T08:14:43,036 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T08:14:43,036 creating build 2021-07-15T08:14:43,037 creating build/src.linux-armv7l-3.9 2021-07-15T08:14:43,037 creating build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:14:43,038 creating build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:43,039 creating build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:14:43,232 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:43,233 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:43,234 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:14:43,234 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:14:43,273 appenddecl: "dimension" not implemented. 2021-07-15T08:14:43,285 appenddecl: "dimension" not implemented. 2021-07-15T08:14:43,289 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:43,290 appenddecl: "dimension" not implemented. 2021-07-15T08:14:43,502 Reading fortran codes... 2021-07-15T08:14:43,502 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:14:43,503 Post-processing... 2021-07-15T08:14:43,503 Block: utils 2021-07-15T08:14:43,503 Block: determinant_func 2021-07-15T08:14:43,503 Block: determinant 2021-07-15T08:14:43,503 Block: distance 2021-07-15T08:14:43,503 Block: distance_info 2021-07-15T08:14:43,503 Block: quicksort 2021-07-15T08:14:43,503 Block: quick_sort 2021-07-15T08:14:43,504 Block: cg_function 2021-07-15T08:14:43,504 Block: calculate_cg 2021-07-15T08:14:43,504 Block: angle 2021-07-15T08:14:43,504 Block: angle_info 2021-07-15T08:14:43,504 Block: c_stats 2021-07-15T08:14:43,504 Block: customize_stats 2021-07-15T08:14:43,504 Block: a_stats 2021-07-15T08:14:43,504 Block: all_stats 2021-07-15T08:14:43,505 Post-processing (stage 2)... 2021-07-15T08:14:43,505 Block: utils 2021-07-15T08:14:43,505 Block: unknown_interface 2021-07-15T08:14:43,505 Block: determinant_func 2021-07-15T08:14:43,505 Block: determinant 2021-07-15T08:14:43,505 Block: distance 2021-07-15T08:14:43,505 Block: distance_info 2021-07-15T08:14:43,506 Block: quicksort 2021-07-15T08:14:43,506 Block: quick_sort 2021-07-15T08:14:43,506 Block: cg_function 2021-07-15T08:14:43,506 Block: calculate_cg 2021-07-15T08:14:43,506 Block: angle 2021-07-15T08:14:43,506 Block: angle_info 2021-07-15T08:14:43,506 Block: c_stats 2021-07-15T08:14:43,506 Block: customize_stats 2021-07-15T08:14:43,507 Block: a_stats 2021-07-15T08:14:43,507 Block: all_stats 2021-07-15T08:14:43,507 Building modules... 2021-07-15T08:14:43,507 Building module "utils"... 2021-07-15T08:14:43,507 Constructing F90 module support for "determinant_func"... 2021-07-15T08:14:43,507 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:14:43,507 deter_value = determinant(matrix) 2021-07-15T08:14:43,507 Constructing F90 module support for "distance"... 2021-07-15T08:14:43,508 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:14:43,508 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:43,508 Constructing F90 module support for "quicksort"... 2021-07-15T08:14:43,508 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:14:43,508 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:14:43,508 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:14:43,508 Constructing F90 module support for "cg_function"... 2021-07-15T08:14:43,509 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:14:43,509 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:14:43,509 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:14:43,509 Constructing F90 module support for "angle"... 2021-07-15T08:14:43,509 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:14:43,509 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:43,509 Constructing F90 module support for "c_stats"... 2021-07-15T08:14:43,510 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:14:43,510 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:14:43,510 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:14:43,510 Constructing F90 module support for "a_stats"... 2021-07-15T08:14:43,510 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:14:43,510 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:14:43,510 stats = all_stats(list,[len_bn]) 2021-07-15T08:14:43,510 Wrote C/API module "utils" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c" 2021-07-15T08:14:43,511 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90" 2021-07-15T08:14:43,511 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:43,511 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:43,511 creating build/src.linux-armv7l-3.9/build 2021-07-15T08:14:43,511 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:14:43,511 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:14:43,511 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:43,512 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:14:43,512 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:14:43,512 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:14:43,512 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:14:43,512 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:14:43,512 f2py options: [] 2021-07-15T08:14:43,513 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c 2021-07-15T08:14:43,708 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:43,709 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:43,710 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:14:43,710 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:14:43,760 appenddecl: "dimension" not implemented. 2021-07-15T08:14:43,767 appenddecl: "dimension" not implemented. 2021-07-15T08:14:43,770 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:43,771 appenddecl: "dimension" not implemented. 2021-07-15T08:14:44,067 Reading fortran codes... 2021-07-15T08:14:44,067 Reading file 'amlearn/featurize/src/voronoi_nn.f90' (format:free) 2021-07-15T08:14:44,068 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:14:44,068 Line #39 in amlearn/featurize/src/voronoi_nn.f90:" use :: distance " 2021-07-15T08:14:44,068 analyzeline: Could not crack the use statement. 2021-07-15T08:14:44,068 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:14:44,068 Post-processing... 2021-07-15T08:14:44,068 Block: voronoi_nn 2021-07-15T08:14:44,068 Block: determinant 2021-07-15T08:14:44,069 Block: voronoi 2021-07-15T08:14:44,069 Block: determinant_func 2021-07-15T08:14:44,069 Block: determinant 2021-07-15T08:14:44,069 Block: distance 2021-07-15T08:14:44,069 Block: distance_info 2021-07-15T08:14:44,069 Block: quicksort 2021-07-15T08:14:44,069 Block: quick_sort 2021-07-15T08:14:44,069 Block: cg_function 2021-07-15T08:14:44,070 Block: calculate_cg 2021-07-15T08:14:44,070 Block: angle 2021-07-15T08:14:44,070 Block: angle_info 2021-07-15T08:14:44,070 Block: c_stats 2021-07-15T08:14:44,070 Block: customize_stats 2021-07-15T08:14:44,070 Block: a_stats 2021-07-15T08:14:44,070 Block: all_stats 2021-07-15T08:14:44,070 Post-processing (stage 2)... 2021-07-15T08:14:44,071 Block: voronoi_nn 2021-07-15T08:14:44,071 Block: unknown_interface 2021-07-15T08:14:44,071 Block: determinant 2021-07-15T08:14:44,071 Block: voronoi 2021-07-15T08:14:44,071 Block: determinant_func 2021-07-15T08:14:44,071 Block: determinant 2021-07-15T08:14:44,071 Block: distance 2021-07-15T08:14:44,071 Block: distance_info 2021-07-15T08:14:44,071 Block: quicksort 2021-07-15T08:14:44,072 Block: quick_sort 2021-07-15T08:14:44,072 Block: cg_function 2021-07-15T08:14:44,072 Block: calculate_cg 2021-07-15T08:14:44,072 Block: angle 2021-07-15T08:14:44,072 Block: angle_info 2021-07-15T08:14:44,072 Block: c_stats 2021-07-15T08:14:44,072 Block: customize_stats 2021-07-15T08:14:44,072 Block: a_stats 2021-07-15T08:14:44,072 Block: all_stats 2021-07-15T08:14:44,073 Building modules... 2021-07-15T08:14:44,073 Building module "voronoi_nn"... 2021-07-15T08:14:44,073 Constructing wrapper function "determinant"... 2021-07-15T08:14:44,073 deter_value = determinant(face) 2021-07-15T08:14:44,073 Constructing wrapper function "voronoi"... 2021-07-15T08:14:44,073 n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists = voronoi(atom_type,atom_coords,cutoff,allow_neighbor_limit,small_face_thres,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:14:44,073 Constructing F90 module support for "determinant_func"... 2021-07-15T08:14:44,074 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:14:44,074 deter_value = determinant(matrix) 2021-07-15T08:14:44,074 Constructing F90 module support for "distance"... 2021-07-15T08:14:44,074 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:14:44,074 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:44,074 Constructing F90 module support for "quicksort"... 2021-07-15T08:14:44,074 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:14:44,074 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:14:44,074 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:14:44,075 Constructing F90 module support for "cg_function"... 2021-07-15T08:14:44,075 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:14:44,075 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:14:44,075 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:14:44,075 Constructing F90 module support for "angle"... 2021-07-15T08:14:44,075 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:14:44,075 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:44,075 Constructing F90 module support for "c_stats"... 2021-07-15T08:14:44,075 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:14:44,076 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:14:44,076 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:14:44,076 Constructing F90 module support for "a_stats"... 2021-07-15T08:14:44,076 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:14:44,076 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:14:44,076 stats = all_stats(list,[len_bn]) 2021-07-15T08:14:44,076 Wrote C/API module "voronoi_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c" 2021-07-15T08:14:44,076 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90" 2021-07-15T08:14:44,076 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:44,077 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:44,077 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:14:44,077 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:14:44,077 f2py options: [] 2021-07-15T08:14:44,077 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c 2021-07-15T08:14:44,286 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:44,288 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:44,288 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:14:44,288 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:14:44,330 sortvarnames: failed to compute dependencies because of cyclic dependencies between target_voro_idx, voronoi_index_list, motif_one_hot, n_voro, n_target, n_atoms 2021-07-15T08:14:44,391 appenddecl: "dimension" not implemented. 2021-07-15T08:14:44,403 appenddecl: "dimension" not implemented. 2021-07-15T08:14:44,407 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:44,408 appenddecl: "dimension" not implemented. 2021-07-15T08:14:45,043 Reading fortran codes... 2021-07-15T08:14:45,044 Reading file 'amlearn/featurize/src/voronoi_stats.f90' (format:free) 2021-07-15T08:14:45,044 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:14:45,044 Line #205 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:14:45,044 analyzeline: Could not crack the use statement. 2021-07-15T08:14:45,044 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:14:45,044 Line #230 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:14:45,044 analyzeline: Could not crack the use statement. 2021-07-15T08:14:45,045 {'before': '', 'this': 'use', 'after': ':: a_stats, only : all_stats '} 2021-07-15T08:14:45,045 Line #318 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only : all_stats " 2021-07-15T08:14:45,045 analyzeline: Could not crack the use statement. 2021-07-15T08:14:45,045 {'before': '', 'this': 'use', 'after': ':: c_stats, only : customize_stats '} 2021-07-15T08:14:45,045 Line #320 in amlearn/featurize/src/voronoi_stats.f90:" use :: c_stats, only : customize_stats " 2021-07-15T08:14:45,045 analyzeline: Could not crack the use statement. 2021-07-15T08:14:45,045 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:14:45,045 Post-processing... 2021-07-15T08:14:45,046 Block: voronoi_stats 2021-07-15T08:14:45,046 Block: voronoi_index 2021-07-15T08:14:45,046 Block: i_fold_symmetry 2021-07-15T08:14:45,046 Block: line_percent 2021-07-15T08:14:45,046 {} 2021-07-15T08:14:45,046 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:14:45,046 vars2fortran: No typespec for argument "n_voro". 2021-07-15T08:14:45,046 {} 2021-07-15T08:14:45,047 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:14:45,047 vars2fortran: No typespec for argument "n_target". 2021-07-15T08:14:45,047 Block: character_motif 2021-07-15T08:14:45,047 Block: area_wt_i_fold_symmetry 2021-07-15T08:14:45,047 Block: vol_wt_i_fold_symmetry 2021-07-15T08:14:45,047 Block: voronoi_area_stats 2021-07-15T08:14:45,047 Block: voronoi_area_stats_separate 2021-07-15T08:14:45,047 Block: voronoi_vol_stats 2021-07-15T08:14:45,047 Block: voronoi_vol_stats_separate 2021-07-15T08:14:45,048 Block: voronoi_distance_stats 2021-07-15T08:14:45,048 Block: determinant_func 2021-07-15T08:14:45,048 Block: determinant 2021-07-15T08:14:45,048 Block: distance 2021-07-15T08:14:45,048 Block: distance_info 2021-07-15T08:14:45,048 Block: quicksort 2021-07-15T08:14:45,048 Block: quick_sort 2021-07-15T08:14:45,048 Block: cg_function 2021-07-15T08:14:45,048 Block: calculate_cg 2021-07-15T08:14:45,049 Block: angle 2021-07-15T08:14:45,049 Block: angle_info 2021-07-15T08:14:45,049 Block: c_stats 2021-07-15T08:14:45,049 Block: customize_stats 2021-07-15T08:14:45,049 Block: a_stats 2021-07-15T08:14:45,049 Block: all_stats 2021-07-15T08:14:45,049 Post-processing (stage 2)... 2021-07-15T08:14:45,050 Block: voronoi_stats 2021-07-15T08:14:45,050 Block: unknown_interface 2021-07-15T08:14:45,050 Block: voronoi_index 2021-07-15T08:14:45,050 Block: i_fold_symmetry 2021-07-15T08:14:45,050 Block: line_percent 2021-07-15T08:14:45,050 Block: character_motif 2021-07-15T08:14:45,050 Block: area_wt_i_fold_symmetry 2021-07-15T08:14:45,050 Block: vol_wt_i_fold_symmetry 2021-07-15T08:14:45,050 Block: voronoi_area_stats 2021-07-15T08:14:45,051 Block: voronoi_area_stats_separate 2021-07-15T08:14:45,051 Block: voronoi_vol_stats 2021-07-15T08:14:45,051 Block: voronoi_vol_stats_separate 2021-07-15T08:14:45,051 Block: voronoi_distance_stats 2021-07-15T08:14:45,051 Block: determinant_func 2021-07-15T08:14:45,051 Block: determinant 2021-07-15T08:14:45,051 Block: distance 2021-07-15T08:14:45,051 Block: distance_info 2021-07-15T08:14:45,051 Block: quicksort 2021-07-15T08:14:45,052 Block: quick_sort 2021-07-15T08:14:45,052 Block: cg_function 2021-07-15T08:14:45,052 Block: calculate_cg 2021-07-15T08:14:45,052 Block: angle 2021-07-15T08:14:45,052 Block: angle_info 2021-07-15T08:14:45,052 Block: c_stats 2021-07-15T08:14:45,052 Block: customize_stats 2021-07-15T08:14:45,052 Block: a_stats 2021-07-15T08:14:45,052 Block: all_stats 2021-07-15T08:14:45,053 Building modules... 2021-07-15T08:14:45,053 Building module "voronoi_stats"... 2021-07-15T08:14:45,053 Constructing wrapper function "voronoi_index"... 2021-07-15T08:14:45,053 voronoi_index_list = voronoi_index(voronoi_index_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:14:45,053 Constructing wrapper function "i_fold_symmetry"... 2021-07-15T08:14:45,053 i_symm_list = i_fold_symmetry(i_symm_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:14:45,053 Constructing wrapper function "line_percent"... 2021-07-15T08:14:45,053 percent_list = line_percent(percent_list,value_list,[n_atoms,n_values]) 2021-07-15T08:14:45,053 Constructing wrapper function "character_motif"... 2021-07-15T08:14:45,054 motif_one_hot = character_motif(motif_one_hot,voronoi_index_list,edge_min,target_voro_idx,frank_kasper,[n_atoms,n_voro,n_target]) 2021-07-15T08:14:45,054 Constructing wrapper function "area_wt_i_fold_symmetry"... 2021-07-15T08:14:45,054 area_wt_i_symm_list = area_wt_i_fold_symmetry(area_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:14:45,054 Constructing wrapper function "vol_wt_i_fold_symmetry"... 2021-07-15T08:14:45,054 vol_wt_i_symm_list = vol_wt_i_fold_symmetry(vol_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:14:45,054 Constructing wrapper function "voronoi_area_stats"... 2021-07-15T08:14:45,054 area_stats = voronoi_area_stats(area_stats,n_neighbor_list,neighbor_area_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:14:45,054 Constructing wrapper function "voronoi_area_stats_separate"... 2021-07-15T08:14:45,054 area_stats_separate = voronoi_area_stats_separate(area_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:14:45,055 Constructing wrapper function "voronoi_vol_stats"... 2021-07-15T08:14:45,055 vol_stats = voronoi_vol_stats(vol_stats,n_neighbor_list,neighbor_vol_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:14:45,055 Constructing wrapper function "voronoi_vol_stats_separate"... 2021-07-15T08:14:45,055 vol_stats_separate = voronoi_vol_stats_separate(vol_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:14:45,055 Constructing wrapper function "voronoi_distance_stats"... 2021-07-15T08:14:45,055 distance_stats = voronoi_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:14:45,055 Constructing F90 module support for "determinant_func"... 2021-07-15T08:14:45,055 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:14:45,055 deter_value = determinant(matrix) 2021-07-15T08:14:45,056 Constructing F90 module support for "distance"... 2021-07-15T08:14:45,056 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:14:45,056 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:45,056 Constructing F90 module support for "quicksort"... 2021-07-15T08:14:45,056 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:14:45,056 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:14:45,056 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:14:45,056 Constructing F90 module support for "cg_function"... 2021-07-15T08:14:45,057 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:14:45,057 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:14:45,057 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:14:45,057 Constructing F90 module support for "angle"... 2021-07-15T08:14:45,057 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:14:45,057 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:45,057 Constructing F90 module support for "c_stats"... 2021-07-15T08:14:45,057 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:14:45,057 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:14:45,058 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:14:45,058 Constructing F90 module support for "a_stats"... 2021-07-15T08:14:45,058 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:14:45,058 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:14:45,058 stats = all_stats(list,[len_bn]) 2021-07-15T08:14:45,058 Wrote C/API module "voronoi_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c" 2021-07-15T08:14:45,058 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90" 2021-07-15T08:14:45,058 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:45,058 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:45,059 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:14:45,059 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:14:45,059 f2py options: [] 2021-07-15T08:14:45,059 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c 2021-07-15T08:14:45,408 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:45,410 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:45,411 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:14:45,411 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:14:45,458 appenddecl: "dimension" not implemented. 2021-07-15T08:14:45,465 appenddecl: "dimension" not implemented. 2021-07-15T08:14:45,467 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:45,468 appenddecl: "dimension" not implemented. 2021-07-15T08:14:45,741 Reading fortran codes... 2021-07-15T08:14:45,741 Reading file 'amlearn/featurize/src/boop.f90' (format:free) 2021-07-15T08:14:45,741 {'before': '', 'this': 'use', 'after': ':: angle '} 2021-07-15T08:14:45,741 Line #9 in amlearn/featurize/src/boop.f90:" use :: angle " 2021-07-15T08:14:45,741 analyzeline: Could not crack the use statement. 2021-07-15T08:14:45,741 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:14:45,742 Post-processing... 2021-07-15T08:14:45,742 Block: boop 2021-07-15T08:14:45,742 Block: calculate_boop 2021-07-15T08:14:45,742 Block: determinant_func 2021-07-15T08:14:45,742 Block: determinant 2021-07-15T08:14:45,742 Block: distance 2021-07-15T08:14:45,742 Block: distance_info 2021-07-15T08:14:45,742 Block: quicksort 2021-07-15T08:14:45,743 Block: quick_sort 2021-07-15T08:14:45,743 Block: cg_function 2021-07-15T08:14:45,743 Block: calculate_cg 2021-07-15T08:14:45,743 Block: angle 2021-07-15T08:14:45,743 Block: angle_info 2021-07-15T08:14:45,743 Block: c_stats 2021-07-15T08:14:45,743 Block: customize_stats 2021-07-15T08:14:45,744 Block: a_stats 2021-07-15T08:14:45,744 Block: all_stats 2021-07-15T08:14:45,744 Post-processing (stage 2)... 2021-07-15T08:14:45,744 Block: boop 2021-07-15T08:14:45,744 Block: unknown_interface 2021-07-15T08:14:45,744 Block: calculate_boop 2021-07-15T08:14:45,744 Block: determinant_func 2021-07-15T08:14:45,744 Block: determinant 2021-07-15T08:14:45,744 Block: distance 2021-07-15T08:14:45,745 Block: distance_info 2021-07-15T08:14:45,745 Block: quicksort 2021-07-15T08:14:45,745 Block: quick_sort 2021-07-15T08:14:45,745 Block: cg_function 2021-07-15T08:14:45,745 Block: calculate_cg 2021-07-15T08:14:45,745 Block: angle 2021-07-15T08:14:45,745 Block: angle_info 2021-07-15T08:14:45,745 Block: c_stats 2021-07-15T08:14:45,745 Block: customize_stats 2021-07-15T08:14:45,746 Block: a_stats 2021-07-15T08:14:45,746 Block: all_stats 2021-07-15T08:14:45,746 Building modules... 2021-07-15T08:14:45,746 Building module "boop"... 2021-07-15T08:14:45,746 Constructing wrapper function "calculate_boop"... 2021-07-15T08:14:45,746 ql,wlbar,coarse_ql,coarse_wlbar = calculate_boop(atom_coords,pbc,bds,n_neighbor_list,neighbor_lists,low_order,higher_order,coarse_lower_order,coarse_higher_order,ql,wlbar,coarse_ql,coarse_wlbar,[n_atoms,n_neighbor_limit]) 2021-07-15T08:14:45,746 Constructing F90 module support for "determinant_func"... 2021-07-15T08:14:45,746 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:14:45,746 deter_value = determinant(matrix) 2021-07-15T08:14:45,747 Constructing F90 module support for "distance"... 2021-07-15T08:14:45,747 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:14:45,747 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:45,747 Constructing F90 module support for "quicksort"... 2021-07-15T08:14:45,747 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:14:45,747 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:14:45,747 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:14:45,747 Constructing F90 module support for "cg_function"... 2021-07-15T08:14:45,747 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:14:45,748 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:14:45,748 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:14:45,748 Constructing F90 module support for "angle"... 2021-07-15T08:14:45,748 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:14:45,748 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:45,748 Constructing F90 module support for "c_stats"... 2021-07-15T08:14:45,748 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:14:45,748 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:14:45,748 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:14:45,749 Constructing F90 module support for "a_stats"... 2021-07-15T08:14:45,749 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:14:45,749 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:14:45,749 stats = all_stats(list,[len_bn]) 2021-07-15T08:14:45,749 Wrote C/API module "boop" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c" 2021-07-15T08:14:45,749 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90" 2021-07-15T08:14:45,749 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:45,749 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:45,750 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:14:45,750 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:14:45,750 f2py options: [] 2021-07-15T08:14:45,750 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c 2021-07-15T08:14:45,847 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:45,848 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:45,849 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:14:45,849 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:14:45,891 appenddecl: "dimension" not implemented. 2021-07-15T08:14:45,903 appenddecl: "dimension" not implemented. 2021-07-15T08:14:45,907 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:45,908 appenddecl: "dimension" not implemented. 2021-07-15T08:14:46,156 Reading fortran codes... 2021-07-15T08:14:46,156 Reading file 'amlearn/featurize/src/mro_stats.f90' (format:free) 2021-07-15T08:14:46,156 {'before': '', 'this': 'use', 'after': ':: c_stats '} 2021-07-15T08:14:46,156 Line #5 in amlearn/featurize/src/mro_stats.f90:" use :: c_stats " 2021-07-15T08:14:46,156 analyzeline: Could not crack the use statement. 2021-07-15T08:14:46,157 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:14:46,157 Post-processing... 2021-07-15T08:14:46,157 Block: mro_stats 2021-07-15T08:14:46,157 {'attrspec': ['intent(in)']} 2021-07-15T08:14:46,157 In: :mro_stats:amlearn/featurize/src/mro_stats.f90:sro_to_mro 2021-07-15T08:14:46,157 vars2fortran: No typespec for argument "n_neighbor_limit". 2021-07-15T08:14:46,157 Block: sro_to_mro 2021-07-15T08:14:46,157 Block: determinant_func 2021-07-15T08:14:46,158 Block: determinant 2021-07-15T08:14:46,158 Block: distance 2021-07-15T08:14:46,158 Block: distance_info 2021-07-15T08:14:46,158 Block: quicksort 2021-07-15T08:14:46,158 Block: quick_sort 2021-07-15T08:14:46,158 Block: cg_function 2021-07-15T08:14:46,158 Block: calculate_cg 2021-07-15T08:14:46,158 Block: angle 2021-07-15T08:14:46,159 Block: angle_info 2021-07-15T08:14:46,159 Block: c_stats 2021-07-15T08:14:46,159 Block: customize_stats 2021-07-15T08:14:46,159 Block: a_stats 2021-07-15T08:14:46,159 Block: all_stats 2021-07-15T08:14:46,159 Post-processing (stage 2)... 2021-07-15T08:14:46,159 Block: mro_stats 2021-07-15T08:14:46,160 Block: unknown_interface 2021-07-15T08:14:46,160 Block: sro_to_mro 2021-07-15T08:14:46,160 Block: determinant_func 2021-07-15T08:14:46,160 Block: determinant 2021-07-15T08:14:46,160 Block: distance 2021-07-15T08:14:46,160 Block: distance_info 2021-07-15T08:14:46,160 Block: quicksort 2021-07-15T08:14:46,160 Block: quick_sort 2021-07-15T08:14:46,160 Block: cg_function 2021-07-15T08:14:46,160 Block: calculate_cg 2021-07-15T08:14:46,161 Block: angle 2021-07-15T08:14:46,161 Block: angle_info 2021-07-15T08:14:46,161 Block: c_stats 2021-07-15T08:14:46,161 Block: customize_stats 2021-07-15T08:14:46,161 Block: a_stats 2021-07-15T08:14:46,161 Block: all_stats 2021-07-15T08:14:46,161 Building modules... 2021-07-15T08:14:46,161 Building module "mro_stats"... 2021-07-15T08:14:46,161 Constructing wrapper function "sro_to_mro"... 2021-07-15T08:14:46,162 mro_feature = sro_to_mro(sro_feature,n_neighbor_list,neighbor_lists,stats_types,mro_feature,[n_atoms,n_neighbor_limit,sum_stats_types]) 2021-07-15T08:14:46,162 Constructing F90 module support for "determinant_func"... 2021-07-15T08:14:46,162 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:14:46,162 deter_value = determinant(matrix) 2021-07-15T08:14:46,162 Constructing F90 module support for "distance"... 2021-07-15T08:14:46,162 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:14:46,162 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:46,162 Constructing F90 module support for "quicksort"... 2021-07-15T08:14:46,163 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:14:46,163 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:14:46,163 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:14:46,163 Constructing F90 module support for "cg_function"... 2021-07-15T08:14:46,163 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:14:46,163 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:14:46,163 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:14:46,163 Constructing F90 module support for "angle"... 2021-07-15T08:14:46,163 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:14:46,164 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:46,164 Constructing F90 module support for "c_stats"... 2021-07-15T08:14:46,164 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:14:46,164 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:14:46,164 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:14:46,164 Constructing F90 module support for "a_stats"... 2021-07-15T08:14:46,164 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:14:46,164 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:14:46,164 stats = all_stats(list,[len_bn]) 2021-07-15T08:14:46,165 Wrote C/API module "mro_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c" 2021-07-15T08:14:46,165 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90" 2021-07-15T08:14:46,165 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:46,165 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:46,165 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:14:46,165 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:14:46,165 f2py options: [] 2021-07-15T08:14:46,165 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c 2021-07-15T08:14:46,272 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:46,274 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:46,274 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:14:46,274 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:14:46,304 appenddecl: "dimension" not implemented. 2021-07-15T08:14:46,311 appenddecl: "dimension" not implemented. 2021-07-15T08:14:46,314 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:46,315 appenddecl: "dimension" not implemented. 2021-07-15T08:14:46,563 Reading fortran codes... 2021-07-15T08:14:46,563 Reading file 'amlearn/featurize/src/neighbor_data.f90' (format:free) 2021-07-15T08:14:46,563 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:14:46,563 Post-processing... 2021-07-15T08:14:46,564 Block: neighbor_data 2021-07-15T08:14:46,564 Block: add_neighbor_features 2021-07-15T08:14:46,564 Block: determinant_func 2021-07-15T08:14:46,564 Block: determinant 2021-07-15T08:14:46,564 Block: distance 2021-07-15T08:14:46,564 Block: distance_info 2021-07-15T08:14:46,564 Block: quicksort 2021-07-15T08:14:46,564 Block: quick_sort 2021-07-15T08:14:46,565 Block: cg_function 2021-07-15T08:14:46,565 Block: calculate_cg 2021-07-15T08:14:46,565 Block: angle 2021-07-15T08:14:46,565 Block: angle_info 2021-07-15T08:14:46,565 Block: c_stats 2021-07-15T08:14:46,565 Block: customize_stats 2021-07-15T08:14:46,565 Block: a_stats 2021-07-15T08:14:46,565 Block: all_stats 2021-07-15T08:14:46,565 Post-processing (stage 2)... 2021-07-15T08:14:46,566 Block: neighbor_data 2021-07-15T08:14:46,566 Block: unknown_interface 2021-07-15T08:14:46,566 Block: add_neighbor_features 2021-07-15T08:14:46,566 Block: determinant_func 2021-07-15T08:14:46,566 Block: determinant 2021-07-15T08:14:46,566 Block: distance 2021-07-15T08:14:46,566 Block: distance_info 2021-07-15T08:14:46,566 Block: quicksort 2021-07-15T08:14:46,567 Block: quick_sort 2021-07-15T08:14:46,567 Block: cg_function 2021-07-15T08:14:46,567 Block: calculate_cg 2021-07-15T08:14:46,567 Block: angle 2021-07-15T08:14:46,567 Block: angle_info 2021-07-15T08:14:46,567 Block: c_stats 2021-07-15T08:14:46,567 Block: customize_stats 2021-07-15T08:14:46,567 Block: a_stats 2021-07-15T08:14:46,567 Block: all_stats 2021-07-15T08:14:46,568 Building modules... 2021-07-15T08:14:46,568 Building module "neighbor_data"... 2021-07-15T08:14:46,568 Constructing wrapper function "add_neighbor_features"... 2021-07-15T08:14:46,568 features_new = add_neighbor_features(pred_last,neigh_voro,probs,features_new,[n_atoms,n_neighs,n_probs,n_features]) 2021-07-15T08:14:46,568 Constructing F90 module support for "determinant_func"... 2021-07-15T08:14:46,568 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:14:46,568 deter_value = determinant(matrix) 2021-07-15T08:14:46,568 Constructing F90 module support for "distance"... 2021-07-15T08:14:46,568 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:14:46,569 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:46,569 Constructing F90 module support for "quicksort"... 2021-07-15T08:14:46,569 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:14:46,569 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:14:46,569 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:14:46,569 Constructing F90 module support for "cg_function"... 2021-07-15T08:14:46,569 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:14:46,570 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:14:46,570 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:14:46,570 Constructing F90 module support for "angle"... 2021-07-15T08:14:46,570 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:14:46,570 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:46,570 Constructing F90 module support for "c_stats"... 2021-07-15T08:14:46,570 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:14:46,570 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:14:46,570 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:14:46,571 Constructing F90 module support for "a_stats"... 2021-07-15T08:14:46,571 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:14:46,571 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:14:46,571 stats = all_stats(list,[len_bn]) 2021-07-15T08:14:46,571 Wrote C/API module "neighbor_data" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c" 2021-07-15T08:14:46,571 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90" 2021-07-15T08:14:46,571 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:46,572 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:46,572 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:14:46,572 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:14:46,572 f2py options: [] 2021-07-15T08:14:46,572 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c 2021-07-15T08:14:46,676 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:46,678 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:46,679 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:14:46,679 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:14:46,709 appenddecl: "dimension" not implemented. 2021-07-15T08:14:46,716 appenddecl: "dimension" not implemented. 2021-07-15T08:14:46,718 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:46,719 appenddecl: "dimension" not implemented. 2021-07-15T08:14:46,970 Reading fortran codes... 2021-07-15T08:14:46,971 Reading file 'amlearn/featurize/src/distance_stats.f90' (format:free) 2021-07-15T08:14:46,971 {'before': '', 'this': 'use', 'after': ':: a_stats '} 2021-07-15T08:14:46,971 Line #17 in amlearn/featurize/src/distance_stats.f90:" use :: a_stats " 2021-07-15T08:14:46,971 analyzeline: Could not crack the use statement. 2021-07-15T08:14:46,971 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:14:46,971 Post-processing... 2021-07-15T08:14:46,971 Block: distance_stats 2021-07-15T08:14:46,971 Block: cn_dist 2021-07-15T08:14:46,972 Block: cutoff_distance_stats 2021-07-15T08:14:46,972 Block: determinant_func 2021-07-15T08:14:46,972 Block: determinant 2021-07-15T08:14:46,972 Block: distance 2021-07-15T08:14:46,972 Block: distance_info 2021-07-15T08:14:46,972 Block: quicksort 2021-07-15T08:14:46,972 Block: quick_sort 2021-07-15T08:14:46,972 Block: cg_function 2021-07-15T08:14:46,973 Block: calculate_cg 2021-07-15T08:14:46,973 Block: angle 2021-07-15T08:14:46,973 Block: angle_info 2021-07-15T08:14:46,973 Block: c_stats 2021-07-15T08:14:46,973 Block: customize_stats 2021-07-15T08:14:46,973 Block: a_stats 2021-07-15T08:14:46,973 Block: all_stats 2021-07-15T08:14:46,973 Post-processing (stage 2)... 2021-07-15T08:14:46,973 Block: distance_stats 2021-07-15T08:14:46,974 Block: unknown_interface 2021-07-15T08:14:46,974 Block: cn_dist 2021-07-15T08:14:46,974 Block: cutoff_distance_stats 2021-07-15T08:14:46,974 Block: determinant_func 2021-07-15T08:14:46,974 Block: determinant 2021-07-15T08:14:46,974 Block: distance 2021-07-15T08:14:46,974 Block: distance_info 2021-07-15T08:14:46,974 Block: quicksort 2021-07-15T08:14:46,975 Block: quick_sort 2021-07-15T08:14:46,975 Block: cg_function 2021-07-15T08:14:46,975 Block: calculate_cg 2021-07-15T08:14:46,975 Block: angle 2021-07-15T08:14:46,975 Block: angle_info 2021-07-15T08:14:46,975 Block: c_stats 2021-07-15T08:14:46,975 Block: customize_stats 2021-07-15T08:14:46,975 Block: a_stats 2021-07-15T08:14:46,975 Block: all_stats 2021-07-15T08:14:46,975 Building modules... 2021-07-15T08:14:46,976 Building module "distance_stats"... 2021-07-15T08:14:46,976 Constructing wrapper function "cn_dist"... 2021-07-15T08:14:46,976 cn = cn_dist(n_neighbor_list) 2021-07-15T08:14:46,976 Constructing wrapper function "cutoff_distance_stats"... 2021-07-15T08:14:46,976 cutoff_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,n_neighbor_limit]) 2021-07-15T08:14:46,976 Constructing F90 module support for "determinant_func"... 2021-07-15T08:14:46,976 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:14:46,976 deter_value = determinant(matrix) 2021-07-15T08:14:46,977 Constructing F90 module support for "distance"... 2021-07-15T08:14:46,977 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:14:46,977 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:46,977 Constructing F90 module support for "quicksort"... 2021-07-15T08:14:46,977 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:14:46,977 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:14:46,977 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:14:46,977 Constructing F90 module support for "cg_function"... 2021-07-15T08:14:46,977 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:14:46,978 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:14:46,978 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:14:46,978 Constructing F90 module support for "angle"... 2021-07-15T08:14:46,978 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:14:46,978 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:46,978 Constructing F90 module support for "c_stats"... 2021-07-15T08:14:46,978 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:14:46,978 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:14:46,978 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:14:46,979 Constructing F90 module support for "a_stats"... 2021-07-15T08:14:46,979 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:14:46,979 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:14:46,979 stats = all_stats(list,[len_bn]) 2021-07-15T08:14:46,979 Wrote C/API module "distance_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c" 2021-07-15T08:14:46,979 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90" 2021-07-15T08:14:46,979 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:46,979 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:46,980 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:14:46,980 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:14:46,980 f2py options: [] 2021-07-15T08:14:46,980 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c 2021-07-15T08:14:47,085 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:47,087 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:47,087 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:14:47,088 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:14:47,122 appenddecl: "dimension" not implemented. 2021-07-15T08:14:47,129 appenddecl: "dimension" not implemented. 2021-07-15T08:14:47,132 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:14:47,132 appenddecl: "dimension" not implemented. 2021-07-15T08:14:47,395 Reading fortran codes... 2021-07-15T08:14:47,395 Reading file 'amlearn/featurize/src/distance_nn.f90' (format:free) 2021-07-15T08:14:47,395 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:14:47,395 Line #24 in amlearn/featurize/src/distance_nn.f90:" use :: distance " 2021-07-15T08:14:47,395 analyzeline: Could not crack the use statement. 2021-07-15T08:14:47,396 {'before': '', 'this': 'use', 'after': ':: quicksort '} 2021-07-15T08:14:47,396 Line #26 in amlearn/featurize/src/distance_nn.f90:" use :: quicksort " 2021-07-15T08:14:47,396 analyzeline: Could not crack the use statement. 2021-07-15T08:14:47,396 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:14:47,396 Post-processing... 2021-07-15T08:14:47,396 Block: distance_nn 2021-07-15T08:14:47,396 Block: distance_neighbor 2021-07-15T08:14:47,396 Block: determinant_func 2021-07-15T08:14:47,396 Block: determinant 2021-07-15T08:14:47,397 Block: distance 2021-07-15T08:14:47,397 Block: distance_info 2021-07-15T08:14:47,397 Block: quicksort 2021-07-15T08:14:47,397 Block: quick_sort 2021-07-15T08:14:47,397 Block: cg_function 2021-07-15T08:14:47,397 Block: calculate_cg 2021-07-15T08:14:47,397 Block: angle 2021-07-15T08:14:47,397 Block: angle_info 2021-07-15T08:14:47,398 Block: c_stats 2021-07-15T08:14:47,398 Block: customize_stats 2021-07-15T08:14:47,398 Block: a_stats 2021-07-15T08:14:47,398 Block: all_stats 2021-07-15T08:14:47,398 Post-processing (stage 2)... 2021-07-15T08:14:47,398 Block: distance_nn 2021-07-15T08:14:47,398 Block: unknown_interface 2021-07-15T08:14:47,398 Block: distance_neighbor 2021-07-15T08:14:47,398 Block: determinant_func 2021-07-15T08:14:47,399 Block: determinant 2021-07-15T08:14:47,399 Block: distance 2021-07-15T08:14:47,399 Block: distance_info 2021-07-15T08:14:47,399 Block: quicksort 2021-07-15T08:14:47,399 Block: quick_sort 2021-07-15T08:14:47,399 Block: cg_function 2021-07-15T08:14:47,399 Block: calculate_cg 2021-07-15T08:14:47,400 Block: angle 2021-07-15T08:14:47,400 Block: angle_info 2021-07-15T08:14:47,400 Block: c_stats 2021-07-15T08:14:47,400 Block: customize_stats 2021-07-15T08:14:47,400 Block: a_stats 2021-07-15T08:14:47,400 Block: all_stats 2021-07-15T08:14:47,400 Building modules... 2021-07-15T08:14:47,400 Building module "distance_nn"... 2021-07-15T08:14:47,401 Constructing wrapper function "distance_neighbor"... 2021-07-15T08:14:47,401 n_neighbor_list,neighbor_lists,neighbor_distance_lists = distance_neighbor(atom_type,atom_coords,distance_cutoff,allow_neighbor_limit,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_distance_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:14:47,401 Constructing F90 module support for "determinant_func"... 2021-07-15T08:14:47,401 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:14:47,401 deter_value = determinant(matrix) 2021-07-15T08:14:47,401 Constructing F90 module support for "distance"... 2021-07-15T08:14:47,401 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:14:47,401 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:47,402 Constructing F90 module support for "quicksort"... 2021-07-15T08:14:47,402 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:14:47,402 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:14:47,402 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:14:47,402 Constructing F90 module support for "cg_function"... 2021-07-15T08:14:47,402 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:14:47,402 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:14:47,403 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:14:47,403 Constructing F90 module support for "angle"... 2021-07-15T08:14:47,403 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:14:47,403 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:14:47,403 Constructing F90 module support for "c_stats"... 2021-07-15T08:14:47,403 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:14:47,403 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:14:47,403 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:14:47,404 Constructing F90 module support for "a_stats"... 2021-07-15T08:14:47,404 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:14:47,404 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:14:47,404 stats = all_stats(list,[len_bn]) 2021-07-15T08:14:47,404 Wrote C/API module "distance_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c" 2021-07-15T08:14:47,404 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90" 2021-07-15T08:14:47,404 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:47,404 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:47,405 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:14:47,405 build_src: building npy-pkg config files 2021-07-15T08:14:47,405 creating /tmp/pip-pip-egg-info-tr1q7rxx/amlearn.egg-info 2021-07-15T08:14:47,405 writing /tmp/pip-pip-egg-info-tr1q7rxx/amlearn.egg-info/PKG-INFO 2021-07-15T08:14:47,405 writing dependency_links to /tmp/pip-pip-egg-info-tr1q7rxx/amlearn.egg-info/dependency_links.txt 2021-07-15T08:14:47,405 writing requirements to /tmp/pip-pip-egg-info-tr1q7rxx/amlearn.egg-info/requires.txt 2021-07-15T08:14:47,405 writing top-level names to /tmp/pip-pip-egg-info-tr1q7rxx/amlearn.egg-info/top_level.txt 2021-07-15T08:14:47,406 writing manifest file '/tmp/pip-pip-egg-info-tr1q7rxx/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:14:47,461 reading manifest file '/tmp/pip-pip-egg-info-tr1q7rxx/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:14:47,467 writing manifest file '/tmp/pip-pip-egg-info-tr1q7rxx/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:14:47,608 Source in /tmp/pip-wheel-5jrp9dsk/amlearn_817419ad536d4f7c8a76ac92dbcea768 has version 0.2.5, which satisfies requirement amlearn==0.2.5 from https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c 2021-07-15T08:14:47,609 Removed amlearn==0.2.5 from https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c from build tracker '/tmp/pip-req-tracker-3dq3xtmi' 2021-07-15T08:14:47,613 Created temporary directory: /tmp/pip-unpack-j7x4v65i 2021-07-15T08:14:47,613 Building wheels for collected packages: amlearn 2021-07-15T08:14:47,617 Created temporary directory: /tmp/pip-wheel-e_85ltjm 2021-07-15T08:14:47,618 Building wheel for amlearn (setup.py): started 2021-07-15T08:14:47,618 Destination directory: /tmp/pip-wheel-e_85ltjm 2021-07-15T08:14:47,618 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5jrp9dsk/amlearn_817419ad536d4f7c8a76ac92dbcea768/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5jrp9dsk/amlearn_817419ad536d4f7c8a76ac92dbcea768/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-e_85ltjm 2021-07-15T08:14:49,222 running bdist_wheel 2021-07-15T08:14:49,224 running build 2021-07-15T08:14:49,224 running config_cc 2021-07-15T08:14:49,224 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-07-15T08:14:49,225 running config_fc 2021-07-15T08:14:49,225 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-07-15T08:14:49,225 running build_src 2021-07-15T08:14:49,225 build_src 2021-07-15T08:14:49,225 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:14:49,226 f2py options: [] 2021-07-15T08:14:49,226 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:49,226 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:49,317 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:14:49,318 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:14:49,318 f2py options: [] 2021-07-15T08:14:49,318 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:49,318 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:49,318 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:14:49,318 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:14:49,318 f2py options: [] 2021-07-15T08:14:49,318 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:49,319 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:49,319 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:14:49,319 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:14:49,319 f2py options: [] 2021-07-15T08:14:49,320 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:49,320 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:49,320 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:14:49,320 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:14:49,320 f2py options: [] 2021-07-15T08:14:49,320 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:49,321 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:49,321 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:14:49,321 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:14:49,321 f2py options: [] 2021-07-15T08:14:49,321 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:49,321 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:49,321 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:14:49,322 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:14:49,322 f2py options: [] 2021-07-15T08:14:49,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:49,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:49,322 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:14:49,322 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:14:49,322 f2py options: [] 2021-07-15T08:14:49,323 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:14:49,323 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:14:49,323 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:14:49,323 build_src: building npy-pkg config files 2021-07-15T08:14:49,324 running build_py 2021-07-15T08:14:49,328 creating build/lib.linux-armv7l-3.9 2021-07-15T08:14:49,328 creating build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:14:49,329 copying scripts/pdp_plot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:14:49,331 copying scripts/featurize_bp_symmfunc.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:14:49,332 copying scripts/distribution.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:14:49,334 copying scripts/featurize_interstice.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:14:49,336 copying scripts/generalization.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:14:49,338 copying scripts/__init__.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:14:49,339 copying scripts/feature_violinplot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:14:49,341 copying scripts/fractal_analysis.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:14:49,343 creating build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:14:49,344 copying amlearn/_version.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:14:49,346 copying amlearn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:14:49,348 creating build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,348 copying amlearn/utils/data.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,350 copying amlearn/utils/logging.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,352 copying amlearn/utils/check.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,354 copying amlearn/utils/verbose.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,356 copying amlearn/utils/basetest.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,357 copying amlearn/utils/backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,360 copying amlearn/utils/packing.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,362 copying amlearn/utils/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,363 copying amlearn/utils/directory.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,365 creating build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:14:49,366 copying amlearn/learn/classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:14:49,368 copying amlearn/learn/regressor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:14:49,371 copying amlearn/learn/base.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:14:49,372 copying amlearn/learn/preprocessor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:14:49,374 copying amlearn/learn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:14:49,376 creating build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:49,377 copying amlearn/featurize/symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:49,379 copying amlearn/featurize/pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:49,381 copying amlearn/featurize/short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:49,385 copying amlearn/featurize/medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:49,387 copying amlearn/featurize/base.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:49,389 copying amlearn/featurize/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:49,390 copying amlearn/featurize/nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:49,393 creating build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:14:49,393 copying amlearn/utils/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:14:49,395 copying amlearn/utils/tests/test_backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:14:49,396 copying amlearn/utils/tests/test_data.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:14:49,398 creating build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:14:49,399 copying amlearn/learn/tests/test_classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:14:49,401 copying amlearn/learn/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:14:49,403 creating build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:14:49,403 copying amlearn/learn/sklearn_patch/_split.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:14:49,407 copying amlearn/learn/sklearn_patch/_validation.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:14:49,411 copying amlearn/learn/sklearn_patch/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:14:49,413 creating build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:14:49,413 copying amlearn/featurize/src/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:14:49,415 creating build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:14:49,416 copying amlearn/featurize/tests/test_symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:14:49,419 copying amlearn/featurize/tests/test_featurizer_pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:14:49,421 copying amlearn/featurize/tests/test_short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:14:49,423 copying amlearn/featurize/tests/test_medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:14:49,425 copying amlearn/featurize/tests/test_nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:14:49,427 copying amlearn/featurize/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:14:49,428 copying amlearn/utils/amlearn_logging.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,430 copying amlearn/utils/default_environment.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,431 copying amlearn/utils/PTE.json -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:14:49,439 running build_ext 2021-07-15T08:14:49,445 customize UnixCCompiler 2021-07-15T08:14:49,447 customize UnixCCompiler using build_ext 2021-07-15T08:14:49,559 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2021-07-15T08:14:49,559 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:49,560 creating /tmp/tmp3rib_y2p/home 2021-07-15T08:14:49,561 creating /tmp/tmp3rib_y2p/home/piwheels 2021-07-15T08:14:49,561 creating /tmp/tmp3rib_y2p/home/piwheels/.local 2021-07-15T08:14:49,562 creating /tmp/tmp3rib_y2p/home/piwheels/.local/lib 2021-07-15T08:14:49,563 creating /tmp/tmp3rib_y2p/home/piwheels/.local/lib/python3.9 2021-07-15T08:14:49,563 creating /tmp/tmp3rib_y2p/home/piwheels/.local/lib/python3.9/site-packages 2021-07-15T08:14:49,564 creating /tmp/tmp3rib_y2p/home/piwheels/.local/lib/python3.9/site-packages/numpy 2021-07-15T08:14:49,564 creating /tmp/tmp3rib_y2p/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils 2021-07-15T08:14:49,565 creating /tmp/tmp3rib_y2p/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks 2021-07-15T08:14:49,565 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:49,566 extra options: '-march=native' 2021-07-15T08:14:49,646 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2021-07-15T08:14:49,647 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:49,647 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:49,647 extra options: '-O3' 2021-07-15T08:14:49,727 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2021-07-15T08:14:49,727 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:49,727 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:49,727 extra options: '-Werror' 2021-07-15T08:14:49,808 CCompilerOpt.__init__[1696] : check requested baseline 2021-07-15T08:14:49,813 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2021-07-15T08:14:49,820 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2021-07-15T08:14:49,821 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:49,821 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:49,821 extra options: '-mfpu=neon' 2021-07-15T08:14:49,902 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2021-07-15T08:14:49,902 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:49,903 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:49,903 extra options: '-mfpu=neon -Werror' 2021-07-15T08:14:50,269 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:14:50,269 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:50,270 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:50,270 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2021-07-15T08:14:50,350 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:14:50,351 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:50,351 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:50,352 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2021-07-15T08:14:50,747 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2021-07-15T08:14:50,748 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:50,748 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:50,748 extra options: '-mfpu=neon-vfpv4' 2021-07-15T08:14:50,830 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2021-07-15T08:14:50,831 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:50,831 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:50,831 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2021-07-15T08:14:51,222 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:14:51,223 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:51,223 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:51,223 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2021-07-15T08:14:51,305 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:14:51,305 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:51,305 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:51,306 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2021-07-15T08:14:51,732 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2021-07-15T08:14:51,733 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:51,733 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:51,733 extra options: '-march=armv8.2-a+fp16' 2021-07-15T08:14:51,813 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2021-07-15T08:14:51,814 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:51,814 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:51,815 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2021-07-15T08:14:52,258 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2021-07-15T08:14:52,258 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:52,258 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:52,258 extra options: '-march=armv8.2-a+dotprod' 2021-07-15T08:14:52,339 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2021-07-15T08:14:52,340 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:52,340 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:52,340 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2021-07-15T08:14:52,769 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmp3rib_y2p/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmp3rib_y2p/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2021-07-15T08:14:52,769 /tmp/ccLAY39S.s: Assembler messages: 2021-07-15T08:14:52,769 /tmp/ccLAY39S.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2021-07-15T08:14:52,775 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:14:52,782 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2021-07-15T08:14:52,782 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:52,782 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:52,782 extra options: '-march=armv8.2-a+fp16fml' 2021-07-15T08:14:52,863 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2021-07-15T08:14:52,863 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:52,864 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:14:52,864 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2021-07-15T08:14:53,281 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmp3rib_y2p/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmp3rib_y2p/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2021-07-15T08:14:53,282 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2021-07-15T08:14:53,282 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:14:53,282 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:14:53,282 | ^~~~~~~~~~~~~~ 2021-07-15T08:14:53,282 | vfmlal_low_f16 2021-07-15T08:14:53,282 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2021-07-15T08:14:53,283 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:14:53,283 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:14:53,283 | | 2021-07-15T08:14:53,283 | int 2021-07-15T08:14:53,283 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:14:53,283 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2021-07-15T08:14:53,283 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2021-07-15T08:14:53,283 | ~~~~~~~~~~~~^~~ 2021-07-15T08:14:53,284 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:14:53,284 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:14:53,284 | ^~~~~~~~~~~~~~~~ 2021-07-15T08:14:53,284 | vfmlslq_high_f16 2021-07-15T08:14:53,284 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2021-07-15T08:14:53,284 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:14:53,284 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:14:53,284 | | 2021-07-15T08:14:53,285 | int 2021-07-15T08:14:53,285 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:14:53,285 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2021-07-15T08:14:53,285 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2021-07-15T08:14:53,285 | ~~~~~~~~~~~~^~~ 2021-07-15T08:14:53,285 cc1: all warnings being treated as errors 2021-07-15T08:14:53,288 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:14:53,293 CCompilerOpt.__init__[1721] : initialize targets groups 2021-07-15T08:14:53,299 CCompilerOpt.__init__[1723] : parse target group simd_test 2021-07-15T08:14:53,305 CCompilerOpt._parse_target_tokens[1934] : skip targets (SSE42 FMA4 AVX512F VSX2 VSX3 VSX (FMA3 AVX2) SSE2 AVX512_SKX XOP) not part of baseline or dispatch-able features 2021-07-15T08:14:53,310 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2021-07-15T08:14:53,316 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2021-07-15T08:14:53,367 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2021-07-15T08:14:53,367 customize Gnu95FCompiler 2021-07-15T08:14:53,396 Found executable /usr/bin/gfortran 2021-07-15T08:14:53,444 customize Gnu95FCompiler 2021-07-15T08:14:53,491 customize Gnu95FCompiler using build_ext 2021-07-15T08:14:53,491 building 'amlearn.featurize.src.utils' extension 2021-07-15T08:14:53,493 compiling C sources 2021-07-15T08:14:53,494 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:14:53,494 creating build/temp.linux-armv7l-3.9/build 2021-07-15T08:14:53,495 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:14:53,495 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:14:53,496 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:53,497 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:14:53,498 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build 2021-07-15T08:14:53,498 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:14:53,498 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:14:53,499 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:53,500 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:14:53,500 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:14:53,519 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T08:14:53,520 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c 2021-07-15T08:14:53,925 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:14:53,926 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:14:53,926 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:14:53,926 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:14:53,926 from build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:16: 2021-07-15T08:14:53,926 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:14:53,927 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:14:53,927 | ^~~~~~~ 2021-07-15T08:14:53,937 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:14:53,938 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:14:53,938 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:14:53,938 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:14:53,938 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c:2: 2021-07-15T08:14:53,938 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:14:53,938 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:14:53,939 | ^~~~~~~ 2021-07-15T08:14:53,993 build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:109:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-07-15T08:14:53,994 109 | static int f2py_size(PyArrayObject* var, ...) 2021-07-15T08:14:53,994 | ^~~~~~~~~ 2021-07-15T08:14:55,187 compiling Fortran 90 module sources 2021-07-15T08:14:55,188 creating build/temp.linux-armv7l-3.9/amlearn 2021-07-15T08:14:55,188 creating build/temp.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:14:55,189 creating build/temp.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:14:55,190 Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:14:55,190 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:14:55,190 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:14:55,190 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:14:55,190 extra options: '-Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src' 2021-07-15T08:14:55,191 gfortran:f90: amlearn/featurize/src/utils.f90 2021-07-15T08:14:55,267 amlearn/featurize/src/utils.f90:259:16: 2021-07-15T08:14:55,267 259 | REAL(16) :: std 2021-07-15T08:14:55,267 | 1 2021-07-15T08:14:55,268 Error: Kind 16 not supported for type REAL at (1) 2021-07-15T08:14:55,268 amlearn/featurize/src/utils.f90:285:18: 2021-07-15T08:14:55,269 285 | std = std + (list(atom) - mean)**2 2021-07-15T08:14:55,269 | 1 2021-07-15T08:14:55,269 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] 2021-07-15T08:14:55,275 error: Command "/usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops -Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c -c amlearn/featurize/src/utils.f90 -o build/temp.linux-armv7l-3.9/amlearn/featurize/src/utils.o -Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src" failed with exit status 1 2021-07-15T08:14:55,275 ########### EXT COMPILER OPTIMIZATION ########### 2021-07-15T08:14:55,275 Platform : 2021-07-15T08:14:55,276 Architecture: armhf 2021-07-15T08:14:55,276 Compiler : gcc 2021-07-15T08:14:55,276 CPU baseline : 2021-07-15T08:14:55,276 Requested : 'min' 2021-07-15T08:14:55,276 Enabled : none 2021-07-15T08:14:55,276 Flags : none 2021-07-15T08:14:55,276 Extra checks: none 2021-07-15T08:14:55,277 CPU dispatch : 2021-07-15T08:14:55,277 Requested : 'max -xop -fma4' 2021-07-15T08:14:55,277 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2021-07-15T08:14:55,277 Generated : none 2021-07-15T08:14:55,277 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-wheel-5jrp9dsk/amlearn_817419ad536d4f7c8a76ac92dbcea768/build/temp.linux-armv7l-3.9/ccompiler_opt_cache_ext.py 2021-07-15T08:14:55,441 Building wheel for amlearn (setup.py): finished with status 'error' 2021-07-15T08:14:55,441 ERROR: Failed building wheel for amlearn 2021-07-15T08:14:55,442 Running setup.py clean for amlearn 2021-07-15T08:14:55,442 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5jrp9dsk/amlearn_817419ad536d4f7c8a76ac92dbcea768/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5jrp9dsk/amlearn_817419ad536d4f7c8a76ac92dbcea768/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T08:14:57,083 running clean 2021-07-15T08:14:57,084 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:14:57,099 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:14:57,121 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T08:14:57,121 'build/scripts.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T08:14:57,249 Failed to build amlearn 2021-07-15T08:14:57,249 ERROR: Failed to build one or more wheels 2021-07-15T08:14:57,250 Exception information: 2021-07-15T08:14:57,250 Traceback (most recent call last): 2021-07-15T08:14:57,250 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T08:14:57,250 status = self.run(options, args) 2021-07-15T08:14:57,250 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T08:14:57,250 return func(self, options, args) 2021-07-15T08:14:57,250 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T08:14:57,250 raise CommandError( 2021-07-15T08:14:57,250 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T08:14:57,253 Removed build tracker: '/tmp/pip-req-tracker-3dq3xtmi'