2021-07-15T08:48:41,924 Created temporary directory: /tmp/pip-ephem-wheel-cache-12j4ga4z 2021-07-15T08:48:41,926 Created temporary directory: /tmp/pip-req-tracker-4nvs2lj2 2021-07-15T08:48:41,927 Initialized build tracking at /tmp/pip-req-tracker-4nvs2lj2 2021-07-15T08:48:41,927 Created build tracker: /tmp/pip-req-tracker-4nvs2lj2 2021-07-15T08:48:41,927 Entered build tracker: /tmp/pip-req-tracker-4nvs2lj2 2021-07-15T08:48:41,928 Created temporary directory: /tmp/pip-wheel-opagpcjh 2021-07-15T08:48:41,960 1 location(s) to search for versions of amlearn: 2021-07-15T08:48:41,960 * https://pypi.org/simple/amlearn/ 2021-07-15T08:48:41,961 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2021-07-15T08:48:41,961 Getting page https://pypi.org/simple/amlearn/ 2021-07-15T08:48:41,963 Found index url https://pypi.org/simple 2021-07-15T08:48:42,150 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz#sha256=3feb0259f07d515171eb3f5dbcd60a40a90a2c04b9114be537d617d1df4addee (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2021-07-15T08:48:42,150 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz#sha256=20a099bc7da2324c247c1f5bd4c61cbf207ad59248a0c161fac0a08d11112f36 (from https://pypi.org/simple/amlearn/), version: 0.1.0 2021-07-15T08:48:42,151 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz#sha256=02a6393944cbf8a784db0d554708f37a035c9203518531e46e870bc1453cef7f (from https://pypi.org/simple/amlearn/), version: 0.2.0 2021-07-15T08:48:42,151 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz#sha256=036b1f5f9152145124dc681a3345d518f374c1a8785f602addf4bc27494917f3 (from https://pypi.org/simple/amlearn/), version: 0.2.1 2021-07-15T08:48:42,151 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz#sha256=1ad6512e2146f4e145e097463f4575427820335c59fca3e6bfb41806c786799d (from https://pypi.org/simple/amlearn/), version: 0.2.2 2021-07-15T08:48:42,152 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 (from https://pypi.org/simple/amlearn/), version: 0.2.3 2021-07-15T08:48:42,152 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 (from https://pypi.org/simple/amlearn/), version: 0.2.4 2021-07-15T08:48:42,152 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c (from https://pypi.org/simple/amlearn/), version: 0.2.5 2021-07-15T08:48:42,153 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba (from https://pypi.org/simple/amlearn/), version: 0.2.6 2021-07-15T08:48:42,153 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 (from https://pypi.org/simple/amlearn/), version: 0.3.1 2021-07-15T08:48:42,153 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e (from https://pypi.org/simple/amlearn/), version: 0.3.2 2021-07-15T08:48:42,153 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d (from https://pypi.org/simple/amlearn/), version: 0.3.3 2021-07-15T08:48:42,154 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 (from https://pypi.org/simple/amlearn/), version: 0.3.4 2021-07-15T08:48:42,154 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2021-07-15T08:48:42,176 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2021-07-15T08:48:42,195 Collecting amlearn==0.2.6 2021-07-15T08:48:42,197 Created temporary directory: /tmp/pip-unpack-5xtbdjwj 2021-07-15T08:48:42,426 Downloading amlearn-0.2.6.tar.gz (83 kB) 2021-07-15T08:48:42,604 Added amlearn==0.2.6 from https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba to build tracker '/tmp/pip-req-tracker-4nvs2lj2' 2021-07-15T08:48:42,605 Running setup.py (path:/tmp/pip-wheel-opagpcjh/amlearn_ea38c5997de84a90868d5f5f2cf1343d/setup.py) egg_info for package amlearn 2021-07-15T08:48:42,606 Created temporary directory: /tmp/pip-pip-egg-info-pzya9z05 2021-07-15T08:48:42,606 Running command python setup.py egg_info 2021-07-15T08:48:44,644 running egg_info 2021-07-15T08:48:44,645 running build_src 2021-07-15T08:48:44,648 build_src 2021-07-15T08:48:44,648 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:48:44,648 f2py options: [] 2021-07-15T08:48:44,649 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T08:48:44,649 creating build 2021-07-15T08:48:44,649 creating build/src.linux-armv7l-3.9 2021-07-15T08:48:44,650 creating build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:48:44,650 creating build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:44,651 creating build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:44,846 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:44,847 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:44,848 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:44,848 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:44,887 appenddecl: "dimension" not implemented. 2021-07-15T08:48:44,899 appenddecl: "dimension" not implemented. 2021-07-15T08:48:44,903 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:44,904 appenddecl: "dimension" not implemented. 2021-07-15T08:48:45,113 Reading fortran codes... 2021-07-15T08:48:45,113 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:45,113 Post-processing... 2021-07-15T08:48:45,113 Block: utils 2021-07-15T08:48:45,113 Block: determinant_func 2021-07-15T08:48:45,114 Block: determinant 2021-07-15T08:48:45,114 Block: distance 2021-07-15T08:48:45,114 Block: distance_info 2021-07-15T08:48:45,114 Block: quicksort 2021-07-15T08:48:45,114 Block: quick_sort 2021-07-15T08:48:45,114 Block: cg_function 2021-07-15T08:48:45,115 Block: calculate_cg 2021-07-15T08:48:45,115 Block: angle 2021-07-15T08:48:45,115 Block: angle_info 2021-07-15T08:48:45,115 Block: c_stats 2021-07-15T08:48:45,115 Block: customize_stats 2021-07-15T08:48:45,115 Block: a_stats 2021-07-15T08:48:45,116 Block: all_stats 2021-07-15T08:48:45,116 Post-processing (stage 2)... 2021-07-15T08:48:45,116 Block: utils 2021-07-15T08:48:45,116 Block: unknown_interface 2021-07-15T08:48:45,116 Block: determinant_func 2021-07-15T08:48:45,116 Block: determinant 2021-07-15T08:48:45,117 Block: distance 2021-07-15T08:48:45,117 Block: distance_info 2021-07-15T08:48:45,117 Block: quicksort 2021-07-15T08:48:45,117 Block: quick_sort 2021-07-15T08:48:45,117 Block: cg_function 2021-07-15T08:48:45,118 Block: calculate_cg 2021-07-15T08:48:45,118 Block: angle 2021-07-15T08:48:45,118 Block: angle_info 2021-07-15T08:48:45,119 Block: c_stats 2021-07-15T08:48:45,119 Block: customize_stats 2021-07-15T08:48:45,119 Block: a_stats 2021-07-15T08:48:45,119 Block: all_stats 2021-07-15T08:48:45,119 Building modules... 2021-07-15T08:48:45,119 Building module "utils"... 2021-07-15T08:48:45,120 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:45,120 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:45,120 deter_value = determinant(matrix) 2021-07-15T08:48:45,120 Constructing F90 module support for "distance"... 2021-07-15T08:48:45,120 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:45,120 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:45,120 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:45,120 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:45,121 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:45,121 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:45,121 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:45,121 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:45,121 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:45,121 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:45,121 Constructing F90 module support for "angle"... 2021-07-15T08:48:45,121 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:45,122 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:45,122 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:45,122 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:45,122 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:45,122 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:45,122 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:45,122 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:45,122 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:45,123 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:45,123 Wrote C/API module "utils" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c" 2021-07-15T08:48:45,123 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90" 2021-07-15T08:48:45,123 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:45,123 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:45,123 creating build/src.linux-armv7l-3.9/build 2021-07-15T08:48:45,123 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:48:45,124 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:48:45,124 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:45,124 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:45,124 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:45,124 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:45,124 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:48:45,124 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:48:45,124 f2py options: [] 2021-07-15T08:48:45,125 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c 2021-07-15T08:48:45,323 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:45,325 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:45,326 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:45,326 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:45,376 appenddecl: "dimension" not implemented. 2021-07-15T08:48:45,383 appenddecl: "dimension" not implemented. 2021-07-15T08:48:45,385 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:45,386 appenddecl: "dimension" not implemented. 2021-07-15T08:48:45,681 Reading fortran codes... 2021-07-15T08:48:45,681 Reading file 'amlearn/featurize/src/voronoi_nn.f90' (format:free) 2021-07-15T08:48:45,682 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:48:45,682 Line #39 in amlearn/featurize/src/voronoi_nn.f90:" use :: distance " 2021-07-15T08:48:45,682 analyzeline: Could not crack the use statement. 2021-07-15T08:48:45,682 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:45,682 Post-processing... 2021-07-15T08:48:45,682 Block: voronoi_nn 2021-07-15T08:48:45,682 Block: determinant 2021-07-15T08:48:45,683 Block: voronoi 2021-07-15T08:48:45,683 Block: determinant_func 2021-07-15T08:48:45,683 Block: determinant 2021-07-15T08:48:45,683 Block: distance 2021-07-15T08:48:45,683 Block: distance_info 2021-07-15T08:48:45,683 Block: quicksort 2021-07-15T08:48:45,683 Block: quick_sort 2021-07-15T08:48:45,683 Block: cg_function 2021-07-15T08:48:45,683 Block: calculate_cg 2021-07-15T08:48:45,684 Block: angle 2021-07-15T08:48:45,684 Block: angle_info 2021-07-15T08:48:45,684 Block: c_stats 2021-07-15T08:48:45,684 Block: customize_stats 2021-07-15T08:48:45,684 Block: a_stats 2021-07-15T08:48:45,684 Block: all_stats 2021-07-15T08:48:45,684 Post-processing (stage 2)... 2021-07-15T08:48:45,684 Block: voronoi_nn 2021-07-15T08:48:45,685 Block: unknown_interface 2021-07-15T08:48:45,685 Block: determinant 2021-07-15T08:48:45,685 Block: voronoi 2021-07-15T08:48:45,685 Block: determinant_func 2021-07-15T08:48:45,685 Block: determinant 2021-07-15T08:48:45,685 Block: distance 2021-07-15T08:48:45,685 Block: distance_info 2021-07-15T08:48:45,685 Block: quicksort 2021-07-15T08:48:45,685 Block: quick_sort 2021-07-15T08:48:45,686 Block: cg_function 2021-07-15T08:48:45,686 Block: calculate_cg 2021-07-15T08:48:45,686 Block: angle 2021-07-15T08:48:45,686 Block: angle_info 2021-07-15T08:48:45,686 Block: c_stats 2021-07-15T08:48:45,686 Block: customize_stats 2021-07-15T08:48:45,686 Block: a_stats 2021-07-15T08:48:45,686 Block: all_stats 2021-07-15T08:48:45,686 Building modules... 2021-07-15T08:48:45,687 Building module "voronoi_nn"... 2021-07-15T08:48:45,687 Constructing wrapper function "determinant"... 2021-07-15T08:48:45,687 deter_value = determinant(face) 2021-07-15T08:48:45,687 Constructing wrapper function "voronoi"... 2021-07-15T08:48:45,687 n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists = voronoi(atom_type,atom_coords,cutoff,allow_neighbor_limit,small_face_thres,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:48:45,687 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:45,687 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:45,687 deter_value = determinant(matrix) 2021-07-15T08:48:45,688 Constructing F90 module support for "distance"... 2021-07-15T08:48:45,688 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:45,688 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:45,688 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:45,688 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:45,688 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:45,688 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:45,688 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:45,688 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:45,689 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:45,689 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:45,689 Constructing F90 module support for "angle"... 2021-07-15T08:48:45,689 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:45,689 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:45,689 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:45,689 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:45,689 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:45,689 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:45,690 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:45,690 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:45,690 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:45,690 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:45,690 Wrote C/API module "voronoi_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c" 2021-07-15T08:48:45,690 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90" 2021-07-15T08:48:45,690 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:45,690 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:45,690 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:48:45,691 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:48:45,691 f2py options: [] 2021-07-15T08:48:45,691 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c 2021-07-15T08:48:45,902 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:45,903 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:45,904 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:45,904 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:45,946 sortvarnames: failed to compute dependencies because of cyclic dependencies between target_voro_idx, voronoi_index_list, motif_one_hot, n_voro, n_target, n_atoms 2021-07-15T08:48:46,008 appenddecl: "dimension" not implemented. 2021-07-15T08:48:46,020 appenddecl: "dimension" not implemented. 2021-07-15T08:48:46,023 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:46,024 appenddecl: "dimension" not implemented. 2021-07-15T08:48:46,648 Reading fortran codes... 2021-07-15T08:48:46,648 Reading file 'amlearn/featurize/src/voronoi_stats.f90' (format:free) 2021-07-15T08:48:46,648 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:48:46,648 Line #205 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:48:46,649 analyzeline: Could not crack the use statement. 2021-07-15T08:48:46,649 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:48:46,649 Line #230 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:48:46,649 analyzeline: Could not crack the use statement. 2021-07-15T08:48:46,649 {'before': '', 'this': 'use', 'after': ':: a_stats, only : all_stats '} 2021-07-15T08:48:46,649 Line #318 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only : all_stats " 2021-07-15T08:48:46,649 analyzeline: Could not crack the use statement. 2021-07-15T08:48:46,649 {'before': '', 'this': 'use', 'after': ':: c_stats, only : customize_stats '} 2021-07-15T08:48:46,650 Line #320 in amlearn/featurize/src/voronoi_stats.f90:" use :: c_stats, only : customize_stats " 2021-07-15T08:48:46,650 analyzeline: Could not crack the use statement. 2021-07-15T08:48:46,650 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:46,650 Post-processing... 2021-07-15T08:48:46,650 Block: voronoi_stats 2021-07-15T08:48:46,650 Block: voronoi_index 2021-07-15T08:48:46,650 Block: i_fold_symmetry 2021-07-15T08:48:46,650 Block: line_percent 2021-07-15T08:48:46,650 {} 2021-07-15T08:48:46,651 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:48:46,651 vars2fortran: No typespec for argument "n_voro". 2021-07-15T08:48:46,651 {} 2021-07-15T08:48:46,651 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:48:46,651 vars2fortran: No typespec for argument "n_target". 2021-07-15T08:48:46,651 Block: character_motif 2021-07-15T08:48:46,651 Block: area_wt_i_fold_symmetry 2021-07-15T08:48:46,651 Block: vol_wt_i_fold_symmetry 2021-07-15T08:48:46,652 Block: voronoi_area_stats 2021-07-15T08:48:46,652 Block: voronoi_area_stats_separate 2021-07-15T08:48:46,652 Block: voronoi_vol_stats 2021-07-15T08:48:46,652 Block: voronoi_vol_stats_separate 2021-07-15T08:48:46,652 Block: voronoi_distance_stats 2021-07-15T08:48:46,652 Block: determinant_func 2021-07-15T08:48:46,652 Block: determinant 2021-07-15T08:48:46,652 Block: distance 2021-07-15T08:48:46,652 Block: distance_info 2021-07-15T08:48:46,653 Block: quicksort 2021-07-15T08:48:46,653 Block: quick_sort 2021-07-15T08:48:46,653 Block: cg_function 2021-07-15T08:48:46,653 Block: calculate_cg 2021-07-15T08:48:46,653 Block: angle 2021-07-15T08:48:46,653 Block: angle_info 2021-07-15T08:48:46,653 Block: c_stats 2021-07-15T08:48:46,654 Block: customize_stats 2021-07-15T08:48:46,654 Block: a_stats 2021-07-15T08:48:46,654 Block: all_stats 2021-07-15T08:48:46,654 Post-processing (stage 2)... 2021-07-15T08:48:46,654 Block: voronoi_stats 2021-07-15T08:48:46,654 Block: unknown_interface 2021-07-15T08:48:46,654 Block: voronoi_index 2021-07-15T08:48:46,654 Block: i_fold_symmetry 2021-07-15T08:48:46,655 Block: line_percent 2021-07-15T08:48:46,655 Block: character_motif 2021-07-15T08:48:46,655 Block: area_wt_i_fold_symmetry 2021-07-15T08:48:46,655 Block: vol_wt_i_fold_symmetry 2021-07-15T08:48:46,655 Block: voronoi_area_stats 2021-07-15T08:48:46,655 Block: voronoi_area_stats_separate 2021-07-15T08:48:46,655 Block: voronoi_vol_stats 2021-07-15T08:48:46,655 Block: voronoi_vol_stats_separate 2021-07-15T08:48:46,655 Block: voronoi_distance_stats 2021-07-15T08:48:46,656 Block: determinant_func 2021-07-15T08:48:46,656 Block: determinant 2021-07-15T08:48:46,656 Block: distance 2021-07-15T08:48:46,656 Block: distance_info 2021-07-15T08:48:46,656 Block: quicksort 2021-07-15T08:48:46,656 Block: quick_sort 2021-07-15T08:48:46,656 Block: cg_function 2021-07-15T08:48:46,656 Block: calculate_cg 2021-07-15T08:48:46,657 Block: angle 2021-07-15T08:48:46,657 Block: angle_info 2021-07-15T08:48:46,657 Block: c_stats 2021-07-15T08:48:46,657 Block: customize_stats 2021-07-15T08:48:46,657 Block: a_stats 2021-07-15T08:48:46,657 Block: all_stats 2021-07-15T08:48:46,657 Building modules... 2021-07-15T08:48:46,657 Building module "voronoi_stats"... 2021-07-15T08:48:46,657 Constructing wrapper function "voronoi_index"... 2021-07-15T08:48:46,658 voronoi_index_list = voronoi_index(voronoi_index_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:46,658 Constructing wrapper function "i_fold_symmetry"... 2021-07-15T08:48:46,658 i_symm_list = i_fold_symmetry(i_symm_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:46,658 Constructing wrapper function "line_percent"... 2021-07-15T08:48:46,658 percent_list = line_percent(percent_list,value_list,[n_atoms,n_values]) 2021-07-15T08:48:46,658 Constructing wrapper function "character_motif"... 2021-07-15T08:48:46,658 motif_one_hot = character_motif(motif_one_hot,voronoi_index_list,edge_min,target_voro_idx,frank_kasper,[n_atoms,n_voro,n_target]) 2021-07-15T08:48:46,658 Constructing wrapper function "area_wt_i_fold_symmetry"... 2021-07-15T08:48:46,659 area_wt_i_symm_list = area_wt_i_fold_symmetry(area_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:46,659 Constructing wrapper function "vol_wt_i_fold_symmetry"... 2021-07-15T08:48:46,659 vol_wt_i_symm_list = vol_wt_i_fold_symmetry(vol_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:46,659 Constructing wrapper function "voronoi_area_stats"... 2021-07-15T08:48:46,659 area_stats = voronoi_area_stats(area_stats,n_neighbor_list,neighbor_area_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:46,659 Constructing wrapper function "voronoi_area_stats_separate"... 2021-07-15T08:48:46,659 area_stats_separate = voronoi_area_stats_separate(area_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:46,659 Constructing wrapper function "voronoi_vol_stats"... 2021-07-15T08:48:46,660 vol_stats = voronoi_vol_stats(vol_stats,n_neighbor_list,neighbor_vol_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:46,660 Constructing wrapper function "voronoi_vol_stats_separate"... 2021-07-15T08:48:46,660 vol_stats_separate = voronoi_vol_stats_separate(vol_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:46,660 Constructing wrapper function "voronoi_distance_stats"... 2021-07-15T08:48:46,660 distance_stats = voronoi_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:46,660 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:46,660 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:46,660 deter_value = determinant(matrix) 2021-07-15T08:48:46,660 Constructing F90 module support for "distance"... 2021-07-15T08:48:46,661 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:46,661 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:46,661 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:46,661 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:46,661 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:46,661 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:46,661 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:46,661 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:46,662 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:46,662 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:46,662 Constructing F90 module support for "angle"... 2021-07-15T08:48:46,662 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:46,662 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:46,662 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:46,662 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:46,662 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:46,663 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:46,663 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:46,663 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:46,663 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:46,663 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:46,663 Wrote C/API module "voronoi_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c" 2021-07-15T08:48:46,663 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90" 2021-07-15T08:48:46,663 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:46,664 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:46,664 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:46,664 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:48:46,664 f2py options: [] 2021-07-15T08:48:46,664 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c 2021-07-15T08:48:47,012 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,013 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,014 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:47,014 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:47,061 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,067 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,070 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,071 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,339 Reading fortran codes... 2021-07-15T08:48:47,339 Reading file 'amlearn/featurize/src/boop.f90' (format:free) 2021-07-15T08:48:47,339 {'before': '', 'this': 'use', 'after': ':: angle '} 2021-07-15T08:48:47,340 Line #9 in amlearn/featurize/src/boop.f90:" use :: angle " 2021-07-15T08:48:47,340 analyzeline: Could not crack the use statement. 2021-07-15T08:48:47,340 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:47,340 Post-processing... 2021-07-15T08:48:47,340 Block: boop 2021-07-15T08:48:47,340 Block: calculate_boop 2021-07-15T08:48:47,340 Block: determinant_func 2021-07-15T08:48:47,340 Block: determinant 2021-07-15T08:48:47,340 Block: distance 2021-07-15T08:48:47,341 Block: distance_info 2021-07-15T08:48:47,341 Block: quicksort 2021-07-15T08:48:47,341 Block: quick_sort 2021-07-15T08:48:47,341 Block: cg_function 2021-07-15T08:48:47,341 Block: calculate_cg 2021-07-15T08:48:47,341 Block: angle 2021-07-15T08:48:47,341 Block: angle_info 2021-07-15T08:48:47,342 Block: c_stats 2021-07-15T08:48:47,342 Block: customize_stats 2021-07-15T08:48:47,342 Block: a_stats 2021-07-15T08:48:47,342 Block: all_stats 2021-07-15T08:48:47,342 Post-processing (stage 2)... 2021-07-15T08:48:47,342 Block: boop 2021-07-15T08:48:47,342 Block: unknown_interface 2021-07-15T08:48:47,342 Block: calculate_boop 2021-07-15T08:48:47,342 Block: determinant_func 2021-07-15T08:48:47,343 Block: determinant 2021-07-15T08:48:47,343 Block: distance 2021-07-15T08:48:47,343 Block: distance_info 2021-07-15T08:48:47,343 Block: quicksort 2021-07-15T08:48:47,343 Block: quick_sort 2021-07-15T08:48:47,343 Block: cg_function 2021-07-15T08:48:47,343 Block: calculate_cg 2021-07-15T08:48:47,343 Block: angle 2021-07-15T08:48:47,343 Block: angle_info 2021-07-15T08:48:47,344 Block: c_stats 2021-07-15T08:48:47,344 Block: customize_stats 2021-07-15T08:48:47,344 Block: a_stats 2021-07-15T08:48:47,344 Block: all_stats 2021-07-15T08:48:47,344 Building modules... 2021-07-15T08:48:47,344 Building module "boop"... 2021-07-15T08:48:47,344 Constructing wrapper function "calculate_boop"... 2021-07-15T08:48:47,344 ql,wlbar,coarse_ql,coarse_wlbar = calculate_boop(atom_coords,pbc,bds,n_neighbor_list,neighbor_lists,low_order,higher_order,coarse_lower_order,coarse_higher_order,ql,wlbar,coarse_ql,coarse_wlbar,[n_atoms,n_neighbor_limit]) 2021-07-15T08:48:47,344 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:47,345 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:47,345 deter_value = determinant(matrix) 2021-07-15T08:48:47,345 Constructing F90 module support for "distance"... 2021-07-15T08:48:47,345 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:47,345 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:47,345 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:47,345 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:47,345 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:47,345 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:47,346 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:47,346 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:47,346 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:47,346 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:47,346 Constructing F90 module support for "angle"... 2021-07-15T08:48:47,346 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:47,346 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:47,346 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:47,346 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:47,347 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:47,347 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:47,347 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:47,347 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:47,347 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:47,347 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:47,347 Wrote C/API module "boop" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c" 2021-07-15T08:48:47,347 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90" 2021-07-15T08:48:47,347 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:47,348 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:47,348 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:48:47,348 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:48:47,348 f2py options: [] 2021-07-15T08:48:47,348 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c 2021-07-15T08:48:47,446 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,447 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,448 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:47,448 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:47,490 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,502 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,506 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,507 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,774 Reading fortran codes... 2021-07-15T08:48:47,774 Reading file 'amlearn/featurize/src/mro_stats.f90' (format:free) 2021-07-15T08:48:47,774 {'before': '', 'this': 'use', 'after': ':: c_stats '} 2021-07-15T08:48:47,774 Line #5 in amlearn/featurize/src/mro_stats.f90:" use :: c_stats " 2021-07-15T08:48:47,775 analyzeline: Could not crack the use statement. 2021-07-15T08:48:47,775 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:47,775 Post-processing... 2021-07-15T08:48:47,775 Block: mro_stats 2021-07-15T08:48:47,775 {'attrspec': ['intent(in)']} 2021-07-15T08:48:47,775 In: :mro_stats:amlearn/featurize/src/mro_stats.f90:sro_to_mro 2021-07-15T08:48:47,775 vars2fortran: No typespec for argument "n_neighbor_limit". 2021-07-15T08:48:47,775 Block: sro_to_mro 2021-07-15T08:48:47,776 Block: determinant_func 2021-07-15T08:48:47,776 Block: determinant 2021-07-15T08:48:47,776 Block: distance 2021-07-15T08:48:47,776 Block: distance_info 2021-07-15T08:48:47,776 Block: quicksort 2021-07-15T08:48:47,776 Block: quick_sort 2021-07-15T08:48:47,776 Block: cg_function 2021-07-15T08:48:47,776 Block: calculate_cg 2021-07-15T08:48:47,777 Block: angle 2021-07-15T08:48:47,777 Block: angle_info 2021-07-15T08:48:47,777 Block: c_stats 2021-07-15T08:48:47,777 Block: customize_stats 2021-07-15T08:48:47,777 Block: a_stats 2021-07-15T08:48:47,777 Block: all_stats 2021-07-15T08:48:47,777 Post-processing (stage 2)... 2021-07-15T08:48:47,777 Block: mro_stats 2021-07-15T08:48:47,777 Block: unknown_interface 2021-07-15T08:48:47,778 Block: sro_to_mro 2021-07-15T08:48:47,778 Block: determinant_func 2021-07-15T08:48:47,778 Block: determinant 2021-07-15T08:48:47,778 Block: distance 2021-07-15T08:48:47,778 Block: distance_info 2021-07-15T08:48:47,778 Block: quicksort 2021-07-15T08:48:47,778 Block: quick_sort 2021-07-15T08:48:47,778 Block: cg_function 2021-07-15T08:48:47,778 Block: calculate_cg 2021-07-15T08:48:47,779 Block: angle 2021-07-15T08:48:47,779 Block: angle_info 2021-07-15T08:48:47,779 Block: c_stats 2021-07-15T08:48:47,779 Block: customize_stats 2021-07-15T08:48:47,779 Block: a_stats 2021-07-15T08:48:47,779 Block: all_stats 2021-07-15T08:48:47,779 Building modules... 2021-07-15T08:48:47,779 Building module "mro_stats"... 2021-07-15T08:48:47,779 Constructing wrapper function "sro_to_mro"... 2021-07-15T08:48:47,780 mro_feature = sro_to_mro(sro_feature,n_neighbor_list,neighbor_lists,stats_types,mro_feature,[n_atoms,n_neighbor_limit,sum_stats_types]) 2021-07-15T08:48:47,780 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:47,780 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:47,780 deter_value = determinant(matrix) 2021-07-15T08:48:47,780 Constructing F90 module support for "distance"... 2021-07-15T08:48:47,780 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:47,780 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:47,780 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:47,780 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:47,781 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:47,781 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:47,781 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:47,781 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:47,781 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:47,781 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:47,781 Constructing F90 module support for "angle"... 2021-07-15T08:48:47,781 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:47,782 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:47,782 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:47,782 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:47,782 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:47,782 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:47,782 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:47,782 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:47,782 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:47,783 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:47,783 Wrote C/API module "mro_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c" 2021-07-15T08:48:47,783 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90" 2021-07-15T08:48:47,783 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:47,783 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:47,783 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:47,783 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:48:47,783 f2py options: [] 2021-07-15T08:48:47,784 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c 2021-07-15T08:48:47,891 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,892 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,893 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:47,893 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:47,924 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,930 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,933 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,934 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,177 Reading fortran codes... 2021-07-15T08:48:48,177 Reading file 'amlearn/featurize/src/neighbor_data.f90' (format:free) 2021-07-15T08:48:48,177 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:48,177 Post-processing... 2021-07-15T08:48:48,177 Block: neighbor_data 2021-07-15T08:48:48,178 Block: add_neighbor_features 2021-07-15T08:48:48,178 Block: determinant_func 2021-07-15T08:48:48,178 Block: determinant 2021-07-15T08:48:48,178 Block: distance 2021-07-15T08:48:48,178 Block: distance_info 2021-07-15T08:48:48,178 Block: quicksort 2021-07-15T08:48:48,178 Block: quick_sort 2021-07-15T08:48:48,178 Block: cg_function 2021-07-15T08:48:48,179 Block: calculate_cg 2021-07-15T08:48:48,179 Block: angle 2021-07-15T08:48:48,179 Block: angle_info 2021-07-15T08:48:48,179 Block: c_stats 2021-07-15T08:48:48,179 Block: customize_stats 2021-07-15T08:48:48,179 Block: a_stats 2021-07-15T08:48:48,179 Block: all_stats 2021-07-15T08:48:48,179 Post-processing (stage 2)... 2021-07-15T08:48:48,180 Block: neighbor_data 2021-07-15T08:48:48,180 Block: unknown_interface 2021-07-15T08:48:48,180 Block: add_neighbor_features 2021-07-15T08:48:48,180 Block: determinant_func 2021-07-15T08:48:48,180 Block: determinant 2021-07-15T08:48:48,180 Block: distance 2021-07-15T08:48:48,180 Block: distance_info 2021-07-15T08:48:48,180 Block: quicksort 2021-07-15T08:48:48,180 Block: quick_sort 2021-07-15T08:48:48,181 Block: cg_function 2021-07-15T08:48:48,181 Block: calculate_cg 2021-07-15T08:48:48,181 Block: angle 2021-07-15T08:48:48,181 Block: angle_info 2021-07-15T08:48:48,181 Block: c_stats 2021-07-15T08:48:48,181 Block: customize_stats 2021-07-15T08:48:48,181 Block: a_stats 2021-07-15T08:48:48,181 Block: all_stats 2021-07-15T08:48:48,181 Building modules... 2021-07-15T08:48:48,182 Building module "neighbor_data"... 2021-07-15T08:48:48,182 Constructing wrapper function "add_neighbor_features"... 2021-07-15T08:48:48,182 features_new = add_neighbor_features(pred_last,neigh_voro,probs,features_new,[n_atoms,n_neighs,n_probs,n_features]) 2021-07-15T08:48:48,182 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:48,182 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:48,182 deter_value = determinant(matrix) 2021-07-15T08:48:48,182 Constructing F90 module support for "distance"... 2021-07-15T08:48:48,182 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:48,183 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:48,183 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:48,183 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:48,183 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:48,183 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:48,183 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:48,183 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:48,183 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:48,183 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:48,184 Constructing F90 module support for "angle"... 2021-07-15T08:48:48,184 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:48,184 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:48,184 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:48,184 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:48,184 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:48,184 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:48,184 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:48,184 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:48,185 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:48,185 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:48,185 Wrote C/API module "neighbor_data" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c" 2021-07-15T08:48:48,185 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90" 2021-07-15T08:48:48,185 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:48,185 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:48,185 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:48:48,185 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:48:48,186 f2py options: [] 2021-07-15T08:48:48,186 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c 2021-07-15T08:48:48,290 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,291 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,292 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:48,292 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:48,323 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,330 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,332 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,333 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,582 Reading fortran codes... 2021-07-15T08:48:48,582 Reading file 'amlearn/featurize/src/distance_stats.f90' (format:free) 2021-07-15T08:48:48,582 {'before': '', 'this': 'use', 'after': ':: a_stats '} 2021-07-15T08:48:48,582 Line #17 in amlearn/featurize/src/distance_stats.f90:" use :: a_stats " 2021-07-15T08:48:48,582 analyzeline: Could not crack the use statement. 2021-07-15T08:48:48,582 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:48,583 Post-processing... 2021-07-15T08:48:48,583 Block: distance_stats 2021-07-15T08:48:48,583 Block: cn_dist 2021-07-15T08:48:48,583 Block: cutoff_distance_stats 2021-07-15T08:48:48,583 Block: determinant_func 2021-07-15T08:48:48,583 Block: determinant 2021-07-15T08:48:48,583 Block: distance 2021-07-15T08:48:48,583 Block: distance_info 2021-07-15T08:48:48,584 Block: quicksort 2021-07-15T08:48:48,584 Block: quick_sort 2021-07-15T08:48:48,584 Block: cg_function 2021-07-15T08:48:48,584 Block: calculate_cg 2021-07-15T08:48:48,584 Block: angle 2021-07-15T08:48:48,584 Block: angle_info 2021-07-15T08:48:48,584 Block: c_stats 2021-07-15T08:48:48,585 Block: customize_stats 2021-07-15T08:48:48,585 Block: a_stats 2021-07-15T08:48:48,585 Block: all_stats 2021-07-15T08:48:48,585 Post-processing (stage 2)... 2021-07-15T08:48:48,585 Block: distance_stats 2021-07-15T08:48:48,585 Block: unknown_interface 2021-07-15T08:48:48,585 Block: cn_dist 2021-07-15T08:48:48,585 Block: cutoff_distance_stats 2021-07-15T08:48:48,586 Block: determinant_func 2021-07-15T08:48:48,586 Block: determinant 2021-07-15T08:48:48,586 Block: distance 2021-07-15T08:48:48,586 Block: distance_info 2021-07-15T08:48:48,586 Block: quicksort 2021-07-15T08:48:48,586 Block: quick_sort 2021-07-15T08:48:48,586 Block: cg_function 2021-07-15T08:48:48,586 Block: calculate_cg 2021-07-15T08:48:48,586 Block: angle 2021-07-15T08:48:48,587 Block: angle_info 2021-07-15T08:48:48,587 Block: c_stats 2021-07-15T08:48:48,587 Block: customize_stats 2021-07-15T08:48:48,587 Block: a_stats 2021-07-15T08:48:48,587 Block: all_stats 2021-07-15T08:48:48,587 Building modules... 2021-07-15T08:48:48,587 Building module "distance_stats"... 2021-07-15T08:48:48,587 Constructing wrapper function "cn_dist"... 2021-07-15T08:48:48,587 cn = cn_dist(n_neighbor_list) 2021-07-15T08:48:48,588 Constructing wrapper function "cutoff_distance_stats"... 2021-07-15T08:48:48,588 cutoff_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,n_neighbor_limit]) 2021-07-15T08:48:48,588 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:48,588 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:48,588 deter_value = determinant(matrix) 2021-07-15T08:48:48,588 Constructing F90 module support for "distance"... 2021-07-15T08:48:48,588 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:48,588 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:48,589 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:48,589 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:48,589 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:48,589 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:48,589 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:48,589 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:48,589 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:48,589 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:48,589 Constructing F90 module support for "angle"... 2021-07-15T08:48:48,590 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:48,590 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:48,590 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:48,590 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:48,590 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:48,590 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:48,590 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:48,590 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:48,591 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:48,591 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:48,591 Wrote C/API module "distance_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c" 2021-07-15T08:48:48,591 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90" 2021-07-15T08:48:48,591 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:48,591 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:48,591 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:48,591 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:48:48,592 f2py options: [] 2021-07-15T08:48:48,592 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c 2021-07-15T08:48:48,699 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,700 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,701 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:48,701 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:48,736 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,743 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,745 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,746 appenddecl: "dimension" not implemented. 2021-07-15T08:48:49,001 Reading fortran codes... 2021-07-15T08:48:49,001 Reading file 'amlearn/featurize/src/distance_nn.f90' (format:free) 2021-07-15T08:48:49,002 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:48:49,002 Line #24 in amlearn/featurize/src/distance_nn.f90:" use :: distance " 2021-07-15T08:48:49,002 analyzeline: Could not crack the use statement. 2021-07-15T08:48:49,002 {'before': '', 'this': 'use', 'after': ':: quicksort '} 2021-07-15T08:48:49,002 Line #26 in amlearn/featurize/src/distance_nn.f90:" use :: quicksort " 2021-07-15T08:48:49,002 analyzeline: Could not crack the use statement. 2021-07-15T08:48:49,002 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:49,003 Post-processing... 2021-07-15T08:48:49,003 Block: distance_nn 2021-07-15T08:48:49,003 Block: distance_neighbor 2021-07-15T08:48:49,003 Block: determinant_func 2021-07-15T08:48:49,003 Block: determinant 2021-07-15T08:48:49,003 Block: distance 2021-07-15T08:48:49,003 Block: distance_info 2021-07-15T08:48:49,003 Block: quicksort 2021-07-15T08:48:49,004 Block: quick_sort 2021-07-15T08:48:49,004 Block: cg_function 2021-07-15T08:48:49,004 Block: calculate_cg 2021-07-15T08:48:49,004 Block: angle 2021-07-15T08:48:49,004 Block: angle_info 2021-07-15T08:48:49,004 Block: c_stats 2021-07-15T08:48:49,005 Block: customize_stats 2021-07-15T08:48:49,005 Block: a_stats 2021-07-15T08:48:49,005 Block: all_stats 2021-07-15T08:48:49,005 Post-processing (stage 2)... 2021-07-15T08:48:49,005 Block: distance_nn 2021-07-15T08:48:49,005 Block: unknown_interface 2021-07-15T08:48:49,005 Block: distance_neighbor 2021-07-15T08:48:49,005 Block: determinant_func 2021-07-15T08:48:49,006 Block: determinant 2021-07-15T08:48:49,006 Block: distance 2021-07-15T08:48:49,006 Block: distance_info 2021-07-15T08:48:49,006 Block: quicksort 2021-07-15T08:48:49,006 Block: quick_sort 2021-07-15T08:48:49,007 Block: cg_function 2021-07-15T08:48:49,007 Block: calculate_cg 2021-07-15T08:48:49,007 Block: angle 2021-07-15T08:48:49,007 Block: angle_info 2021-07-15T08:48:49,007 Block: c_stats 2021-07-15T08:48:49,007 Block: customize_stats 2021-07-15T08:48:49,007 Block: a_stats 2021-07-15T08:48:49,008 Block: all_stats 2021-07-15T08:48:49,008 Building modules... 2021-07-15T08:48:49,008 Building module "distance_nn"... 2021-07-15T08:48:49,008 Constructing wrapper function "distance_neighbor"... 2021-07-15T08:48:49,008 n_neighbor_list,neighbor_lists,neighbor_distance_lists = distance_neighbor(atom_type,atom_coords,distance_cutoff,allow_neighbor_limit,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_distance_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:48:49,008 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:49,009 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:49,009 deter_value = determinant(matrix) 2021-07-15T08:48:49,009 Constructing F90 module support for "distance"... 2021-07-15T08:48:49,009 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:49,009 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:49,009 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:49,010 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:49,010 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:49,010 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:49,010 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:49,010 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:49,010 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:49,011 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:49,011 Constructing F90 module support for "angle"... 2021-07-15T08:48:49,011 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:49,011 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:49,011 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:49,011 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:49,012 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:49,012 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:49,012 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:49,012 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:49,012 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:49,012 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:49,013 Wrote C/API module "distance_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c" 2021-07-15T08:48:49,013 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90" 2021-07-15T08:48:49,013 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:49,013 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:49,013 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:48:49,013 build_src: building npy-pkg config files 2021-07-15T08:48:49,014 creating /tmp/pip-pip-egg-info-pzya9z05/amlearn.egg-info 2021-07-15T08:48:49,014 writing /tmp/pip-pip-egg-info-pzya9z05/amlearn.egg-info/PKG-INFO 2021-07-15T08:48:49,014 writing dependency_links to /tmp/pip-pip-egg-info-pzya9z05/amlearn.egg-info/dependency_links.txt 2021-07-15T08:48:49,014 writing requirements to /tmp/pip-pip-egg-info-pzya9z05/amlearn.egg-info/requires.txt 2021-07-15T08:48:49,014 writing top-level names to /tmp/pip-pip-egg-info-pzya9z05/amlearn.egg-info/top_level.txt 2021-07-15T08:48:49,014 writing manifest file '/tmp/pip-pip-egg-info-pzya9z05/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:48:49,080 reading manifest file '/tmp/pip-pip-egg-info-pzya9z05/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:48:49,088 writing manifest file '/tmp/pip-pip-egg-info-pzya9z05/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:48:49,232 Source in /tmp/pip-wheel-opagpcjh/amlearn_ea38c5997de84a90868d5f5f2cf1343d has version 0.2.6, which satisfies requirement amlearn==0.2.6 from https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba 2021-07-15T08:48:49,233 Removed amlearn==0.2.6 from https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba from build tracker '/tmp/pip-req-tracker-4nvs2lj2' 2021-07-15T08:48:49,238 Created temporary directory: /tmp/pip-unpack-ja8aq6zp 2021-07-15T08:48:49,238 Building wheels for collected packages: amlearn 2021-07-15T08:48:49,242 Created temporary directory: /tmp/pip-wheel-vkcszp6u 2021-07-15T08:48:49,242 Building wheel for amlearn (setup.py): started 2021-07-15T08:48:49,242 Destination directory: /tmp/pip-wheel-vkcszp6u 2021-07-15T08:48:49,243 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-opagpcjh/amlearn_ea38c5997de84a90868d5f5f2cf1343d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-opagpcjh/amlearn_ea38c5997de84a90868d5f5f2cf1343d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vkcszp6u 2021-07-15T08:48:51,209 running bdist_wheel 2021-07-15T08:48:51,212 running build 2021-07-15T08:48:51,212 running config_cc 2021-07-15T08:48:51,212 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-07-15T08:48:51,214 running config_fc 2021-07-15T08:48:51,214 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-07-15T08:48:51,215 running build_src 2021-07-15T08:48:51,215 build_src 2021-07-15T08:48:51,215 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:48:51,216 f2py options: [] 2021-07-15T08:48:51,216 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:51,216 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:51,311 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:48:51,311 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:48:51,311 f2py options: [] 2021-07-15T08:48:51,312 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:51,312 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:51,313 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:48:51,313 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:48:51,313 f2py options: [] 2021-07-15T08:48:51,314 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:51,314 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:51,315 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:51,315 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:48:51,315 f2py options: [] 2021-07-15T08:48:51,316 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:51,316 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:51,317 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:48:51,317 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:48:51,317 f2py options: [] 2021-07-15T08:48:51,318 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:51,318 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:51,319 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:51,319 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:48:51,319 f2py options: [] 2021-07-15T08:48:51,320 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:51,320 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:51,321 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:48:51,321 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:48:51,321 f2py options: [] 2021-07-15T08:48:51,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:51,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:51,322 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:51,323 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:48:51,323 f2py options: [] 2021-07-15T08:48:51,324 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:51,324 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:51,324 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:48:51,325 build_src: building npy-pkg config files 2021-07-15T08:48:51,326 running build_py 2021-07-15T08:48:51,330 creating build/lib.linux-armv7l-3.9 2021-07-15T08:48:51,331 creating build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:51,333 copying scripts/distribution.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:51,335 copying scripts/generalization.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:51,337 copying scripts/featurize_interstice.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:51,339 copying scripts/pdp_plot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:51,340 copying scripts/__init__.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:51,342 copying scripts/featurize_bp_symmfunc.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:51,344 copying scripts/feature_violinplot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:51,346 copying scripts/fractal_analysis.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:51,349 creating build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:48:51,350 copying amlearn/_version.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:48:51,352 copying amlearn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:48:51,354 creating build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:51,355 copying amlearn/learn/classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:51,359 copying amlearn/learn/preprocessor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:51,361 copying amlearn/learn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:51,363 copying amlearn/learn/regressor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:51,366 copying amlearn/learn/base.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:51,369 creating build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:51,370 copying amlearn/featurize/pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:51,373 copying amlearn/featurize/medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:51,375 copying amlearn/featurize/nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:51,377 copying amlearn/featurize/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:51,379 copying amlearn/featurize/short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:51,383 copying amlearn/featurize/base.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:51,385 copying amlearn/featurize/symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:51,389 creating build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,390 copying amlearn/utils/directory.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,392 copying amlearn/utils/verbose.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,394 copying amlearn/utils/logging.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,396 copying amlearn/utils/basetest.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,398 copying amlearn/utils/data.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,400 copying amlearn/utils/packing.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,402 copying amlearn/utils/check.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,404 copying amlearn/utils/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,406 copying amlearn/utils/backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,409 creating build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:48:51,410 copying amlearn/learn/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:48:51,412 copying amlearn/learn/tests/test_classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:48:51,414 creating build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:48:51,415 copying amlearn/learn/sklearn_patch/_split.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:48:51,419 copying amlearn/learn/sklearn_patch/_validation.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:48:51,423 copying amlearn/learn/sklearn_patch/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:48:51,426 creating build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:51,427 copying amlearn/featurize/src/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:51,429 creating build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:51,430 copying amlearn/featurize/tests/test_nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:51,433 copying amlearn/featurize/tests/test_medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:51,435 copying amlearn/featurize/tests/test_featurizer_pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:51,437 copying amlearn/featurize/tests/test_symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:51,440 copying amlearn/featurize/tests/test_short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:51,442 copying amlearn/featurize/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:51,445 creating build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:48:51,446 copying amlearn/utils/tests/test_data.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:48:51,448 copying amlearn/utils/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:48:51,449 copying amlearn/utils/tests/test_backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:48:51,451 copying amlearn/utils/default_environment.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,453 copying amlearn/utils/amlearn_logging.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,455 copying amlearn/utils/PTE.json -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:51,465 running build_ext 2021-07-15T08:48:51,472 customize UnixCCompiler 2021-07-15T08:48:51,474 customize UnixCCompiler using build_ext 2021-07-15T08:48:51,590 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2021-07-15T08:48:51,590 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:51,591 creating /tmp/tmpzbqmsp1l/home 2021-07-15T08:48:51,592 creating /tmp/tmpzbqmsp1l/home/piwheels 2021-07-15T08:48:51,592 creating /tmp/tmpzbqmsp1l/home/piwheels/.local 2021-07-15T08:48:51,593 creating /tmp/tmpzbqmsp1l/home/piwheels/.local/lib 2021-07-15T08:48:51,594 creating /tmp/tmpzbqmsp1l/home/piwheels/.local/lib/python3.9 2021-07-15T08:48:51,594 creating /tmp/tmpzbqmsp1l/home/piwheels/.local/lib/python3.9/site-packages 2021-07-15T08:48:51,595 creating /tmp/tmpzbqmsp1l/home/piwheels/.local/lib/python3.9/site-packages/numpy 2021-07-15T08:48:51,596 creating /tmp/tmpzbqmsp1l/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils 2021-07-15T08:48:51,596 creating /tmp/tmpzbqmsp1l/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks 2021-07-15T08:48:51,597 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:51,597 extra options: '-march=native' 2021-07-15T08:48:51,690 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2021-07-15T08:48:51,690 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:51,691 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:51,691 extra options: '-O3' 2021-07-15T08:48:51,783 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2021-07-15T08:48:51,783 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:51,784 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:51,784 extra options: '-Werror' 2021-07-15T08:48:51,876 CCompilerOpt.__init__[1696] : check requested baseline 2021-07-15T08:48:51,882 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2021-07-15T08:48:51,891 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2021-07-15T08:48:51,891 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:51,891 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:51,892 extra options: '-mfpu=neon' 2021-07-15T08:48:51,982 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2021-07-15T08:48:51,983 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:51,983 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:51,983 extra options: '-mfpu=neon -Werror' 2021-07-15T08:48:52,356 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:48:52,357 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:52,357 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:52,357 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2021-07-15T08:48:52,446 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:48:52,446 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:52,447 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:52,447 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2021-07-15T08:48:52,856 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2021-07-15T08:48:52,856 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:52,856 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:52,857 extra options: '-mfpu=neon-vfpv4' 2021-07-15T08:48:52,952 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2021-07-15T08:48:52,953 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:52,953 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:52,953 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2021-07-15T08:48:53,364 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:48:53,364 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,365 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,365 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2021-07-15T08:48:53,453 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:48:53,454 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,454 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,454 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2021-07-15T08:48:53,894 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2021-07-15T08:48:53,894 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,895 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,895 extra options: '-march=armv8.2-a+fp16' 2021-07-15T08:48:53,988 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2021-07-15T08:48:53,989 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,989 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,990 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2021-07-15T08:48:54,451 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2021-07-15T08:48:54,451 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:54,451 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:54,452 extra options: '-march=armv8.2-a+fp16fml' 2021-07-15T08:48:54,545 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2021-07-15T08:48:54,545 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:54,546 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:54,546 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2021-07-15T08:48:54,973 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmpzbqmsp1l/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmpzbqmsp1l/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2021-07-15T08:48:54,973 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2021-07-15T08:48:54,973 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:48:54,974 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:48:54,974 | ^~~~~~~~~~~~~~ 2021-07-15T08:48:54,974 | vfmlal_low_f16 2021-07-15T08:48:54,974 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2021-07-15T08:48:54,974 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:48:54,974 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:48:54,974 | | 2021-07-15T08:48:54,975 | int 2021-07-15T08:48:54,975 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:48:54,975 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2021-07-15T08:48:54,975 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2021-07-15T08:48:54,975 | ~~~~~~~~~~~~^~~ 2021-07-15T08:48:54,975 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:48:54,975 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:48:54,976 | ^~~~~~~~~~~~~~~~ 2021-07-15T08:48:54,976 | vfmlslq_high_f16 2021-07-15T08:48:54,976 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2021-07-15T08:48:54,976 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:48:54,976 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:48:54,976 | | 2021-07-15T08:48:54,976 | int 2021-07-15T08:48:54,976 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:48:54,977 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2021-07-15T08:48:54,977 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2021-07-15T08:48:54,977 | ~~~~~~~~~~~~^~~ 2021-07-15T08:48:54,977 cc1: all warnings being treated as errors 2021-07-15T08:48:54,980 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:48:54,987 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2021-07-15T08:48:54,988 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:54,988 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:54,988 extra options: '-march=armv8.2-a+dotprod' 2021-07-15T08:48:55,081 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2021-07-15T08:48:55,081 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:55,082 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:55,082 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2021-07-15T08:48:55,520 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmpzbqmsp1l/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmpzbqmsp1l/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2021-07-15T08:48:55,520 /tmp/ccEIeDCb.s: Assembler messages: 2021-07-15T08:48:55,521 /tmp/ccEIeDCb.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2021-07-15T08:48:55,526 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:48:55,533 CCompilerOpt.__init__[1721] : initialize targets groups 2021-07-15T08:48:55,538 CCompilerOpt.__init__[1723] : parse target group simd_test 2021-07-15T08:48:55,544 CCompilerOpt._parse_target_tokens[1934] : skip targets (SSE42 AVX512F SSE2 AVX512_SKX VSX VSX2 XOP VSX3 FMA4 (FMA3 AVX2)) not part of baseline or dispatch-able features 2021-07-15T08:48:55,550 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2021-07-15T08:48:55,556 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2021-07-15T08:48:55,636 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2021-07-15T08:48:55,636 customize Gnu95FCompiler 2021-07-15T08:48:55,638 Found executable /usr/bin/gfortran 2021-07-15T08:48:55,697 customize Gnu95FCompiler 2021-07-15T08:48:55,756 customize Gnu95FCompiler using build_ext 2021-07-15T08:48:55,757 building 'amlearn.featurize.src.utils' extension 2021-07-15T08:48:55,760 compiling C sources 2021-07-15T08:48:55,761 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:55,762 creating build/temp.linux-armv7l-3.9/build 2021-07-15T08:48:55,763 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:48:55,763 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:48:55,764 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:55,765 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:55,766 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build 2021-07-15T08:48:55,766 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:48:55,767 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:48:55,768 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:55,769 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:55,769 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:48:55,792 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.carm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c 2021-07-15T08:48:56,203 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:48:56,204 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:48:56,204 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:48:56,204 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:48:56,204 from build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:16: 2021-07-15T08:48:56,204 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:48:56,205 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:48:56,205 | ^~~~~~~ 2021-07-15T08:48:56,208 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:48:56,208 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:48:56,209 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:48:56,209 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:48:56,209 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c:2: 2021-07-15T08:48:56,209 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:48:56,210 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:48:56,210 | ^~~~~~~ 2021-07-15T08:48:56,277 build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:109:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-07-15T08:48:56,277 109 | static int f2py_size(PyArrayObject* var, ...) 2021-07-15T08:48:56,277 | ^~~~~~~~~ 2021-07-15T08:48:57,440 compiling Fortran 90 module sources 2021-07-15T08:48:57,441 creating build/temp.linux-armv7l-3.9/amlearn 2021-07-15T08:48:57,442 creating build/temp.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:57,442 creating build/temp.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:57,443 Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:48:57,443 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:48:57,444 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:48:57,444 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:48:57,444 extra options: '-Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src' 2021-07-15T08:48:57,445 gfortran:f90: amlearn/featurize/src/utils.f90 2021-07-15T08:48:57,530 amlearn/featurize/src/utils.f90:259:16: 2021-07-15T08:48:57,531 259 | REAL(16) :: std 2021-07-15T08:48:57,531 | 1 2021-07-15T08:48:57,531 Error: Kind 16 not supported for type REAL at (1) 2021-07-15T08:48:57,533 amlearn/featurize/src/utils.f90:285:18: 2021-07-15T08:48:57,533 285 | std = std + (list(atom) - mean)**2 2021-07-15T08:48:57,533 | 1 2021-07-15T08:48:57,534 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] 2021-07-15T08:48:57,541 error: Command "/usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops -Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c -c amlearn/featurize/src/utils.f90 -o build/temp.linux-armv7l-3.9/amlearn/featurize/src/utils.o -Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src" failed with exit status 1 2021-07-15T08:48:57,542 ########### EXT COMPILER OPTIMIZATION ########### 2021-07-15T08:48:57,542 Platform : 2021-07-15T08:48:57,542 Architecture: armhf 2021-07-15T08:48:57,542 Compiler : gcc 2021-07-15T08:48:57,542 CPU baseline : 2021-07-15T08:48:57,543 Requested : 'min' 2021-07-15T08:48:57,543 Enabled : none 2021-07-15T08:48:57,543 Flags : none 2021-07-15T08:48:57,543 Extra checks: none 2021-07-15T08:48:57,543 CPU dispatch : 2021-07-15T08:48:57,543 Requested : 'max -xop -fma4' 2021-07-15T08:48:57,543 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2021-07-15T08:48:57,544 Generated : none 2021-07-15T08:48:57,544 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-wheel-opagpcjh/amlearn_ea38c5997de84a90868d5f5f2cf1343d/build/temp.linux-armv7l-3.9/ccompiler_opt_cache_ext.py 2021-07-15T08:48:57,715 Building wheel for amlearn (setup.py): finished with status 'error' 2021-07-15T08:48:57,715 ERROR: Failed building wheel for amlearn 2021-07-15T08:48:57,716 Running setup.py clean for amlearn 2021-07-15T08:48:57,716 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-opagpcjh/amlearn_ea38c5997de84a90868d5f5f2cf1343d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-opagpcjh/amlearn_ea38c5997de84a90868d5f5f2cf1343d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T08:48:59,439 running clean 2021-07-15T08:48:59,440 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:48:59,455 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:48:59,478 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T08:48:59,479 'build/scripts.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T08:48:59,610 Failed to build amlearn 2021-07-15T08:48:59,610 ERROR: Failed to build one or more wheels 2021-07-15T08:48:59,611 Exception information: 2021-07-15T08:48:59,611 Traceback (most recent call last): 2021-07-15T08:48:59,611 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T08:48:59,611 status = self.run(options, args) 2021-07-15T08:48:59,611 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T08:48:59,611 return func(self, options, args) 2021-07-15T08:48:59,611 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T08:48:59,611 raise CommandError( 2021-07-15T08:48:59,611 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T08:48:59,614 Removed build tracker: '/tmp/pip-req-tracker-4nvs2lj2'